Multiple sequence alignment - TraesCS1A01G284500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G284500 chr1A 100.000 3308 0 0 1 3308 481931929 481935236 0.000000e+00 6109.0
1 TraesCS1A01G284500 chr1D 88.337 3404 159 85 2 3308 381312950 381316212 0.000000e+00 3868.0
2 TraesCS1A01G284500 chr1D 96.774 62 2 0 1123 1184 54950986 54950925 1.620000e-18 104.0
3 TraesCS1A01G284500 chr1D 96.721 61 2 0 1123 1183 54959912 54959852 5.840000e-18 102.0
4 TraesCS1A01G284500 chr1B 89.296 2812 157 65 558 3308 511451311 511454039 0.000000e+00 3393.0
5 TraesCS1A01G284500 chr1B 83.784 629 41 25 2 578 511450579 511451198 1.040000e-149 540.0
6 TraesCS1A01G284500 chr3B 85.654 955 119 14 1105 2050 617268735 617267790 0.000000e+00 989.0
7 TraesCS1A01G284500 chr3D 84.221 1014 135 19 1052 2051 463811418 463810416 0.000000e+00 963.0
8 TraesCS1A01G284500 chr3A 84.175 1030 124 26 1052 2051 606830532 606829512 0.000000e+00 963.0
9 TraesCS1A01G284500 chr4D 79.637 771 118 22 1287 2050 42238308 42237570 4.890000e-143 518.0
10 TraesCS1A01G284500 chr4D 96.774 62 2 0 1123 1184 228102956 228102895 1.620000e-18 104.0
11 TraesCS1A01G284500 chr4A 78.497 772 125 25 1287 2050 597458292 597457554 5.000000e-128 468.0
12 TraesCS1A01G284500 chr4A 78.295 774 130 23 1287 2053 597590707 597589965 6.470000e-127 464.0
13 TraesCS1A01G284500 chr4A 83.453 139 23 0 1287 1425 597617490 597617352 2.680000e-26 130.0
14 TraesCS1A01G284500 chr7D 96.721 61 2 0 1123 1183 334651341 334651281 5.840000e-18 102.0
15 TraesCS1A01G284500 chr5A 96.875 32 0 1 2879 2910 335303612 335303582 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G284500 chr1A 481931929 481935236 3307 False 6109.0 6109 100.000 1 3308 1 chr1A.!!$F1 3307
1 TraesCS1A01G284500 chr1D 381312950 381316212 3262 False 3868.0 3868 88.337 2 3308 1 chr1D.!!$F1 3306
2 TraesCS1A01G284500 chr1B 511450579 511454039 3460 False 1966.5 3393 86.540 2 3308 2 chr1B.!!$F1 3306
3 TraesCS1A01G284500 chr3B 617267790 617268735 945 True 989.0 989 85.654 1105 2050 1 chr3B.!!$R1 945
4 TraesCS1A01G284500 chr3D 463810416 463811418 1002 True 963.0 963 84.221 1052 2051 1 chr3D.!!$R1 999
5 TraesCS1A01G284500 chr3A 606829512 606830532 1020 True 963.0 963 84.175 1052 2051 1 chr3A.!!$R1 999
6 TraesCS1A01G284500 chr4D 42237570 42238308 738 True 518.0 518 79.637 1287 2050 1 chr4D.!!$R1 763
7 TraesCS1A01G284500 chr4A 597457554 597458292 738 True 468.0 468 78.497 1287 2050 1 chr4A.!!$R1 763
8 TraesCS1A01G284500 chr4A 597589965 597590707 742 True 464.0 464 78.295 1287 2053 1 chr4A.!!$R2 766

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
458 502 0.034059 GTATCTCATCAGCACCCGGG 59.966 60.0 22.25 22.25 0.00 5.73 F
691 891 0.174617 GCCTCTGCTACACTCCACTC 59.825 60.0 0.00 0.00 33.53 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2288 2536 0.538584 TCATACCAGAGGCAGCAGTG 59.461 55.0 0.0 0.0 0.00 3.66 R
2516 2766 0.668535 GGGCAGTGAAAAGAACGCTT 59.331 50.0 0.0 0.0 35.37 4.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 4.356405 TCTGCCATTCTTGTCTTTCTGA 57.644 40.909 0.00 0.00 0.00 3.27
76 77 4.276926 GCCATTCTTGTCTTTCTGAGTTGT 59.723 41.667 0.00 0.00 0.00 3.32
98 99 3.529533 TGCATTCCAACACAAAACAAGG 58.470 40.909 0.00 0.00 0.00 3.61
102 103 0.829990 CCAACACAAAACAAGGCCCT 59.170 50.000 0.00 0.00 0.00 5.19
116 117 2.334023 AGGCCCTCTGGATGAGATAAC 58.666 52.381 0.00 0.00 45.39 1.89
119 130 2.549778 GCCCTCTGGATGAGATAACAGC 60.550 54.545 0.00 0.00 45.39 4.40
120 131 2.702478 CCCTCTGGATGAGATAACAGCA 59.298 50.000 0.00 0.00 45.39 4.41
139 164 6.994221 ACAGCAAGTCAGTACTTACTACATT 58.006 36.000 10.08 0.00 44.28 2.71
155 180 4.646492 ACTACATTGAGGATTTGAATGGCC 59.354 41.667 0.00 0.00 32.39 5.36
219 260 2.285220 CGCTTGATCGGTTCCAATACAG 59.715 50.000 0.00 0.00 0.00 2.74
221 262 3.535561 CTTGATCGGTTCCAATACAGCT 58.464 45.455 0.00 0.00 0.00 4.24
222 263 3.179443 TGATCGGTTCCAATACAGCTC 57.821 47.619 0.00 0.00 0.00 4.09
223 264 2.766263 TGATCGGTTCCAATACAGCTCT 59.234 45.455 0.00 0.00 0.00 4.09
224 265 3.958147 TGATCGGTTCCAATACAGCTCTA 59.042 43.478 0.00 0.00 0.00 2.43
237 278 8.898761 CCAATACAGCTCTATCTATACGATCTT 58.101 37.037 0.00 0.00 33.48 2.40
323 367 1.079875 TTCGCGGTAAAGCTTAGCCG 61.080 55.000 27.26 27.26 46.17 5.52
337 381 0.249868 TAGCCGCCCTCAATCATTCG 60.250 55.000 0.00 0.00 0.00 3.34
339 383 1.095228 GCCGCCCTCAATCATTCGAA 61.095 55.000 0.00 0.00 0.00 3.71
410 454 9.846248 CTCCTTTCATAAACTGTTTTTATCCAG 57.154 33.333 11.48 1.90 34.82 3.86
413 457 6.189677 TCATAAACTGTTTTTATCCAGGCG 57.810 37.500 11.48 0.00 32.90 5.52
437 481 3.989698 CTCGCGCTCGTCCCATGTT 62.990 63.158 5.56 0.00 36.96 2.71
438 482 2.202690 CGCGCTCGTCCCATGTTA 60.203 61.111 5.56 0.00 0.00 2.41
439 483 2.230940 CGCGCTCGTCCCATGTTAG 61.231 63.158 5.56 0.00 0.00 2.34
458 502 0.034059 GTATCTCATCAGCACCCGGG 59.966 60.000 22.25 22.25 0.00 5.73
487 531 1.202580 AGATTCTATCCACGCTGCACC 60.203 52.381 0.00 0.00 0.00 5.01
491 535 0.391661 CTATCCACGCTGCACCTGTT 60.392 55.000 0.00 0.00 0.00 3.16
494 538 1.008538 CCACGCTGCACCTGTTTTC 60.009 57.895 0.00 0.00 0.00 2.29
531 575 1.650912 CACAGAGCCACAACAGTGC 59.349 57.895 0.00 0.00 31.87 4.40
690 890 2.281830 GCCTCTGCTACACTCCACT 58.718 57.895 0.00 0.00 33.53 4.00
691 891 0.174617 GCCTCTGCTACACTCCACTC 59.825 60.000 0.00 0.00 33.53 3.51
692 892 1.846007 CCTCTGCTACACTCCACTCT 58.154 55.000 0.00 0.00 0.00 3.24
738 938 3.384467 CCCGCCATCTATTTCCACAAAAT 59.616 43.478 0.00 0.00 40.67 1.82
773 973 2.310309 GCAACAAAGGCTTTGCACC 58.690 52.632 33.69 20.24 46.13 5.01
868 1078 1.583054 AGCGCGGAGGAAATATTCAC 58.417 50.000 8.83 0.00 0.00 3.18
876 1086 3.053455 GAGGAAATATTCACTCCGCTCG 58.947 50.000 7.71 0.00 34.22 5.03
926 1136 4.838152 CACCCCCACCGCATCTCG 62.838 72.222 0.00 0.00 38.08 4.04
945 1155 4.200283 GCTCGCCTCACTCCTCGG 62.200 72.222 0.00 0.00 0.00 4.63
946 1156 3.522731 CTCGCCTCACTCCTCGGG 61.523 72.222 0.00 0.00 0.00 5.14
947 1157 4.361971 TCGCCTCACTCCTCGGGT 62.362 66.667 0.00 0.00 0.00 5.28
948 1158 3.827898 CGCCTCACTCCTCGGGTC 61.828 72.222 0.00 0.00 0.00 4.46
949 1159 2.680352 GCCTCACTCCTCGGGTCA 60.680 66.667 0.00 0.00 0.00 4.02
950 1160 2.716017 GCCTCACTCCTCGGGTCAG 61.716 68.421 0.00 0.00 0.00 3.51
951 1161 1.304547 CCTCACTCCTCGGGTCAGT 60.305 63.158 0.00 0.00 0.00 3.41
1818 2066 2.579201 CGCTTCCACGTCCTCCAT 59.421 61.111 0.00 0.00 0.00 3.41
2037 2285 2.853542 TCCAAGGTGCTGCTCCCA 60.854 61.111 16.54 0.00 0.00 4.37
2172 2420 3.991536 GACGAAGCTGTCCTCGCCC 62.992 68.421 5.47 0.00 32.61 6.13
2249 2497 2.661537 GGCAAAGGCAACGGCAAC 60.662 61.111 0.00 0.00 43.71 4.17
2288 2536 4.876107 AGCATTGTTGTATGTACTACCAGC 59.124 41.667 0.00 4.54 32.25 4.85
2328 2576 1.043673 ATCCGGTGGTGAGCTAGTCC 61.044 60.000 0.00 0.00 0.00 3.85
2356 2604 1.515952 CGTCTCCTTGCTGAGCTCG 60.516 63.158 9.64 5.21 32.22 5.03
2383 2631 0.463620 TTTGCCTTGCTTTGGTCACC 59.536 50.000 0.00 0.00 0.00 4.02
2401 2649 6.106003 GGTCACCATTGTTTCTTCTTTGTTT 58.894 36.000 0.00 0.00 0.00 2.83
2402 2650 6.593770 GGTCACCATTGTTTCTTCTTTGTTTT 59.406 34.615 0.00 0.00 0.00 2.43
2403 2651 7.762159 GGTCACCATTGTTTCTTCTTTGTTTTA 59.238 33.333 0.00 0.00 0.00 1.52
2405 2653 8.527810 TCACCATTGTTTCTTCTTTGTTTTACT 58.472 29.630 0.00 0.00 0.00 2.24
2406 2654 8.594687 CACCATTGTTTCTTCTTTGTTTTACTG 58.405 33.333 0.00 0.00 0.00 2.74
2407 2655 7.277760 ACCATTGTTTCTTCTTTGTTTTACTGC 59.722 33.333 0.00 0.00 0.00 4.40
2408 2656 7.492344 CCATTGTTTCTTCTTTGTTTTACTGCT 59.508 33.333 0.00 0.00 0.00 4.24
2409 2657 9.515020 CATTGTTTCTTCTTTGTTTTACTGCTA 57.485 29.630 0.00 0.00 0.00 3.49
2446 2695 2.484264 GGAGTGAACCTGTACACAATGC 59.516 50.000 0.00 0.00 39.18 3.56
2447 2696 3.138304 GAGTGAACCTGTACACAATGCA 58.862 45.455 0.00 0.00 39.18 3.96
2452 2701 3.940209 ACCTGTACACAATGCATTTGG 57.060 42.857 9.83 7.37 39.80 3.28
2481 2731 3.211045 GGAGAAGCTAGATGACTCGAGT 58.789 50.000 20.18 20.18 0.00 4.18
2482 2732 3.250040 GGAGAAGCTAGATGACTCGAGTC 59.750 52.174 33.76 33.76 44.97 3.36
2501 2751 2.028930 GTCGAGGTGTGAGGAAGATTGT 60.029 50.000 0.00 0.00 0.00 2.71
2554 2804 1.508088 GCGTCATGCTGGAAAAGGG 59.492 57.895 0.00 0.00 41.73 3.95
2566 2816 2.291540 TGGAAAAGGGGAAATGATCGCT 60.292 45.455 0.00 0.00 40.67 4.93
2609 2859 2.734723 CCAGCCGACGACACTGTG 60.735 66.667 6.19 6.19 0.00 3.66
2627 2886 4.183101 CTGTGAAATGTTGGTGCTGTTTT 58.817 39.130 0.00 0.00 0.00 2.43
2669 2928 1.339342 GCTTCCATGGCCATTTTGCTT 60.339 47.619 17.92 0.00 0.00 3.91
2670 2929 2.352388 CTTCCATGGCCATTTTGCTTG 58.648 47.619 17.92 4.05 0.00 4.01
2671 2930 0.036199 TCCATGGCCATTTTGCTTGC 60.036 50.000 17.92 0.00 0.00 4.01
2672 2931 0.035820 CCATGGCCATTTTGCTTGCT 60.036 50.000 17.92 0.00 0.00 3.91
2688 2947 2.278857 CTGAATCGGGCGACGGAG 60.279 66.667 4.35 0.00 43.43 4.63
2709 2968 0.762418 TTGGGAAGCGAAAGTGGAGA 59.238 50.000 0.00 0.00 0.00 3.71
2719 2978 2.192263 GAAAGTGGAGAGGAGGTGGAT 58.808 52.381 0.00 0.00 0.00 3.41
2724 2983 1.406860 GGAGAGGAGGTGGATGGAGC 61.407 65.000 0.00 0.00 0.00 4.70
2726 2985 0.398381 AGAGGAGGTGGATGGAGCTC 60.398 60.000 4.71 4.71 39.35 4.09
2728 2987 2.060980 GGAGGTGGATGGAGCTCGT 61.061 63.158 7.83 0.00 40.70 4.18
2735 2994 2.607750 ATGGAGCTCGTGGGGTGT 60.608 61.111 7.83 0.00 0.00 4.16
3084 3356 0.890996 GGCCGGCCTTATCCTCATTG 60.891 60.000 38.76 0.00 0.00 2.82
3186 3485 0.537600 GACCCGATCGATCTCCCTGA 60.538 60.000 22.43 0.00 0.00 3.86
3191 3490 2.352225 CCGATCGATCTCCCTGAACATC 60.352 54.545 22.43 0.00 0.00 3.06
3192 3491 2.666895 CGATCGATCTCCCTGAACATCG 60.667 54.545 22.43 2.87 39.60 3.84
3193 3492 1.763968 TCGATCTCCCTGAACATCGT 58.236 50.000 0.00 0.00 39.33 3.73
3211 3510 4.436998 CGTCACCAGGCGAGGGAC 62.437 72.222 2.49 2.49 0.00 4.46
3282 3586 1.515521 GGCAACAACGGGACTGGAAG 61.516 60.000 0.00 0.00 42.29 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.296713 AGATAATGCGTGCTTAGAAAAGAAAAA 58.703 29.630 0.00 0.00 34.37 1.94
56 57 5.357878 TGCAACAACTCAGAAAGACAAGAAT 59.642 36.000 0.00 0.00 0.00 2.40
64 65 4.572985 TGGAATGCAACAACTCAGAAAG 57.427 40.909 0.00 0.00 0.00 2.62
71 72 3.883830 TTGTGTTGGAATGCAACAACT 57.116 38.095 21.32 0.00 45.36 3.16
76 77 3.937706 CCTTGTTTTGTGTTGGAATGCAA 59.062 39.130 0.00 0.00 0.00 4.08
87 88 0.675633 CCAGAGGGCCTTGTTTTGTG 59.324 55.000 7.89 0.00 0.00 3.33
91 92 1.005215 CTCATCCAGAGGGCCTTGTTT 59.995 52.381 7.89 0.00 40.84 2.83
94 95 1.138568 ATCTCATCCAGAGGGCCTTG 58.861 55.000 7.89 8.14 44.81 3.61
95 96 2.708325 GTTATCTCATCCAGAGGGCCTT 59.292 50.000 7.89 0.00 44.81 4.35
98 99 2.549778 GCTGTTATCTCATCCAGAGGGC 60.550 54.545 0.00 0.00 44.81 5.19
102 103 4.467438 TGACTTGCTGTTATCTCATCCAGA 59.533 41.667 0.00 0.00 34.78 3.86
119 130 7.827701 TCCTCAATGTAGTAAGTACTGACTTG 58.172 38.462 18.34 10.41 45.74 3.16
139 164 0.034186 AGCGGCCATTCAAATCCTCA 60.034 50.000 2.24 0.00 0.00 3.86
237 278 7.428826 CGGTGATATGCTATCAGCTTGATATA 58.571 38.462 21.88 0.00 42.97 0.86
253 294 1.566563 GCAAGCGAGCGGTGATATG 59.433 57.895 0.00 0.00 0.00 1.78
284 328 2.704725 TTGATTTCGCTCCAAAGTGC 57.295 45.000 0.00 0.00 32.82 4.40
296 340 4.016113 AGCTTTACCGCGAATTGATTTC 57.984 40.909 8.23 0.00 34.40 2.17
348 392 5.516339 GCCGTAAAATGATTTTGATGGAGTG 59.484 40.000 13.08 0.00 34.19 3.51
413 457 2.023041 GACGAGCGCGAGTACTCC 59.977 66.667 19.05 9.01 41.64 3.85
424 468 3.318275 TGAGATACTAACATGGGACGAGC 59.682 47.826 0.00 0.00 0.00 5.03
437 481 2.239400 CCGGGTGCTGATGAGATACTA 58.761 52.381 0.00 0.00 0.00 1.82
438 482 1.043816 CCGGGTGCTGATGAGATACT 58.956 55.000 0.00 0.00 0.00 2.12
439 483 0.034059 CCCGGGTGCTGATGAGATAC 59.966 60.000 14.18 0.00 0.00 2.24
458 502 2.033424 GTGGATAGAATCTTTTGCGGGC 59.967 50.000 0.00 0.00 0.00 6.13
487 531 7.483691 GCGGTAATGGTAAGTTTATGAAAACAG 59.516 37.037 4.04 0.00 46.18 3.16
491 535 6.430308 TGTGCGGTAATGGTAAGTTTATGAAA 59.570 34.615 0.00 0.00 0.00 2.69
494 538 5.583061 TCTGTGCGGTAATGGTAAGTTTATG 59.417 40.000 0.00 0.00 0.00 1.90
531 575 1.400142 TCATGCTCGGGTTTAATTGCG 59.600 47.619 0.00 0.00 0.00 4.85
690 890 1.285373 GGGTCTGGACTCTGGAGTAGA 59.715 57.143 3.03 1.65 42.66 2.59
691 891 1.006043 TGGGTCTGGACTCTGGAGTAG 59.994 57.143 3.03 0.00 42.66 2.57
692 892 1.081481 TGGGTCTGGACTCTGGAGTA 58.919 55.000 3.03 0.00 42.66 2.59
724 924 6.554419 TGAGATTCGCATTTTGTGGAAATAG 58.446 36.000 0.00 0.00 35.79 1.73
725 925 6.507958 TGAGATTCGCATTTTGTGGAAATA 57.492 33.333 0.00 0.00 35.79 1.40
756 956 1.538849 GGAGGTGCAAAGCCTTTGTTG 60.539 52.381 17.88 0.00 42.56 3.33
773 973 4.410400 GGGTTCAGTGCGGGGGAG 62.410 72.222 0.00 0.00 0.00 4.30
801 1011 2.322081 GCGGCCGACTGCTAAACAA 61.322 57.895 33.48 0.00 45.33 2.83
844 1054 3.851976 ATATTTCCTCCGCGCTAGTAG 57.148 47.619 5.56 0.00 0.00 2.57
845 1055 3.570975 TGAATATTTCCTCCGCGCTAGTA 59.429 43.478 5.56 0.00 0.00 1.82
846 1056 2.364324 TGAATATTTCCTCCGCGCTAGT 59.636 45.455 5.56 0.00 0.00 2.57
847 1057 2.731976 GTGAATATTTCCTCCGCGCTAG 59.268 50.000 5.56 2.26 0.00 3.42
848 1058 2.364324 AGTGAATATTTCCTCCGCGCTA 59.636 45.455 5.56 0.00 0.00 4.26
849 1059 1.139058 AGTGAATATTTCCTCCGCGCT 59.861 47.619 5.56 0.00 0.00 5.92
854 1064 3.394719 GAGCGGAGTGAATATTTCCTCC 58.605 50.000 18.03 18.03 40.64 4.30
926 1136 3.844090 GAGGAGTGAGGCGAGCCC 61.844 72.222 10.95 3.15 36.58 5.19
932 1142 2.680352 TGACCCGAGGAGTGAGGC 60.680 66.667 0.00 0.00 0.00 4.70
945 1155 2.032681 GACCACTGGCCACTGACC 59.967 66.667 13.45 1.90 0.00 4.02
946 1156 1.302033 CTGACCACTGGCCACTGAC 60.302 63.158 13.45 7.92 0.00 3.51
947 1157 1.766059 ACTGACCACTGGCCACTGA 60.766 57.895 13.45 0.00 0.00 3.41
948 1158 1.598962 CACTGACCACTGGCCACTG 60.599 63.158 0.00 2.66 0.00 3.66
949 1159 2.822637 CCACTGACCACTGGCCACT 61.823 63.158 0.00 0.00 0.00 4.00
950 1160 2.281761 CCACTGACCACTGGCCAC 60.282 66.667 0.00 0.00 0.00 5.01
951 1161 2.447572 TCCACTGACCACTGGCCA 60.448 61.111 4.71 4.71 0.00 5.36
1818 2066 1.382146 CCCCAGCGGGTAGTAGGAA 60.382 63.158 11.85 0.00 45.50 3.36
2037 2285 1.272147 GCCCTGGTGAACATCTCCTTT 60.272 52.381 0.00 0.00 31.62 3.11
2249 2497 1.227556 GCTATACACCACCGCCCAG 60.228 63.158 0.00 0.00 0.00 4.45
2288 2536 0.538584 TCATACCAGAGGCAGCAGTG 59.461 55.000 0.00 0.00 0.00 3.66
2377 2625 5.262588 ACAAAGAAGAAACAATGGTGACC 57.737 39.130 0.00 0.00 0.00 4.02
2380 2628 8.594687 CAGTAAAACAAAGAAGAAACAATGGTG 58.405 33.333 0.00 0.00 0.00 4.17
2383 2631 8.411318 AGCAGTAAAACAAAGAAGAAACAATG 57.589 30.769 0.00 0.00 0.00 2.82
2430 2678 4.022416 TCCAAATGCATTGTGTACAGGTTC 60.022 41.667 13.82 0.00 37.32 3.62
2481 2731 2.029020 CACAATCTTCCTCACACCTCGA 60.029 50.000 0.00 0.00 0.00 4.04
2482 2732 2.341257 CACAATCTTCCTCACACCTCG 58.659 52.381 0.00 0.00 0.00 4.63
2483 2733 2.079925 GCACAATCTTCCTCACACCTC 58.920 52.381 0.00 0.00 0.00 3.85
2484 2734 1.701847 AGCACAATCTTCCTCACACCT 59.298 47.619 0.00 0.00 0.00 4.00
2485 2735 1.808945 CAGCACAATCTTCCTCACACC 59.191 52.381 0.00 0.00 0.00 4.16
2486 2736 1.198637 GCAGCACAATCTTCCTCACAC 59.801 52.381 0.00 0.00 0.00 3.82
2487 2737 1.202794 TGCAGCACAATCTTCCTCACA 60.203 47.619 0.00 0.00 0.00 3.58
2492 2742 1.706443 GCTTTGCAGCACAATCTTCC 58.294 50.000 0.00 0.00 46.49 3.46
2516 2766 0.668535 GGGCAGTGAAAAGAACGCTT 59.331 50.000 0.00 0.00 35.37 4.68
2547 2797 2.359214 GGAGCGATCATTTCCCCTTTTC 59.641 50.000 1.84 0.00 0.00 2.29
2554 2804 2.149578 CAGGATGGAGCGATCATTTCC 58.850 52.381 1.84 5.33 0.00 3.13
2566 2816 4.503910 CGTGTGATTCTTTACAGGATGGA 58.496 43.478 0.00 0.00 43.62 3.41
2605 2855 3.441496 AACAGCACCAACATTTCACAG 57.559 42.857 0.00 0.00 0.00 3.66
2669 2928 4.812476 CCGTCGCCCGATTCAGCA 62.812 66.667 0.00 0.00 39.56 4.41
2670 2929 4.508128 TCCGTCGCCCGATTCAGC 62.508 66.667 0.00 0.00 39.56 4.26
2671 2930 2.278857 CTCCGTCGCCCGATTCAG 60.279 66.667 0.00 0.00 39.56 3.02
2672 2931 2.162338 AAACTCCGTCGCCCGATTCA 62.162 55.000 0.00 0.00 39.56 2.57
2688 2947 1.266989 CTCCACTTTCGCTTCCCAAAC 59.733 52.381 0.00 0.00 0.00 2.93
2689 2948 1.142060 TCTCCACTTTCGCTTCCCAAA 59.858 47.619 0.00 0.00 0.00 3.28
2691 2950 0.321671 CTCTCCACTTTCGCTTCCCA 59.678 55.000 0.00 0.00 0.00 4.37
2695 2954 0.610687 CCTCCTCTCCACTTTCGCTT 59.389 55.000 0.00 0.00 0.00 4.68
2696 2955 0.543174 ACCTCCTCTCCACTTTCGCT 60.543 55.000 0.00 0.00 0.00 4.93
2698 2957 0.247736 CCACCTCCTCTCCACTTTCG 59.752 60.000 0.00 0.00 0.00 3.46
2699 2958 1.645710 TCCACCTCCTCTCCACTTTC 58.354 55.000 0.00 0.00 0.00 2.62
2709 2968 1.760086 CGAGCTCCATCCACCTCCT 60.760 63.158 8.47 0.00 0.00 3.69
2719 2978 3.625897 CACACCCCACGAGCTCCA 61.626 66.667 8.47 0.00 0.00 3.86
2724 2983 2.431942 GTACGCACACCCCACGAG 60.432 66.667 0.00 0.00 0.00 4.18
2775 3034 3.728373 CTGCCACCCCACCTACCC 61.728 72.222 0.00 0.00 0.00 3.69
3018 3290 0.612174 TCCGCTCTGAACTGCTACCT 60.612 55.000 0.00 0.00 0.00 3.08
3186 3485 1.374252 GCCTGGTGACGACGATGTT 60.374 57.895 0.00 0.00 0.00 2.71
3191 3490 4.778415 CCTCGCCTGGTGACGACG 62.778 72.222 5.70 0.00 34.08 5.12
3192 3491 4.436998 CCCTCGCCTGGTGACGAC 62.437 72.222 5.70 0.00 34.08 4.34
3193 3492 4.671590 TCCCTCGCCTGGTGACGA 62.672 66.667 5.70 2.04 36.73 4.20
3211 3510 1.389204 CGTCGTCGTCTTTCTCTGCG 61.389 60.000 0.00 0.00 0.00 5.18
3218 3517 2.355481 GGCACCGTCGTCGTCTTT 60.355 61.111 0.71 0.00 35.01 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.