>input_sequence_54881
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--------------ATGCGGGGGCAGGGGCAGATCTCCCGCCGGCTGGTCGTGCTTGCGGCGGTGGCCGGGCTGCTGCTG
CTGGCGTGG---GCGCCGGGTGCGGCTGCCGTGGACGTCCAGGCGGTGCTCGCCCCGTTCCCCGACCTCGCCGGCTTCGC
GCGCCTGCTCGCGTCCAGTCCCGTGGCCCGCGAGCTGGCCGGGCGGTCCTCGCTGACGCTGCTCGCCGTGCCCAACGCCG
ACCTCCCCCAGTCGCCCTCGGCGTTCGCGGCCGCCGCGGGCGCCGACCTCGCCGACGTGCTCCGCTACCACGTCCTCCTC
GAGTACCTCTCCCCCGCCGACCTCCGCCGCCTCCCGGCCGCCGGGAAGCTGGTCACCACGCTGTTCCAGACCACCGGCCG
CGCCTCCGCCGACCTCGGCGCCGTCAACGTCACGGCCGCCG---------------------GGCCGGGCCTCGGCGTCG
TCCGCTCGCCCGCGCCCTTC---CCCGGGTCCAACGCCACCGTGCTCGGCTCCGTCACCTCCGTGCCGTACAACCTGAGC
GTGCTGGCCGTGGACGGCCTCATCGCGCCCTCCGGCTTCGACCTGGCGGCCTCCGAGTCC------CGCCCCCCCGCCGC
CGTCAACATCACCCGCGTCCTCGCCGACGCGCGCGGGTTCAACGTGGCGGCGTCCATGCTGGAGGCCTCCGGCGTGGCGG
AGGAGTTCGAGGGCGACGAGCGCGGCGCCGGCATCACGGTGTTCGTCCCCACCGACGACGCCTTCGCCAGCCTCCCCGCC
GGCGACCGGCTCCAGTCCCTCCCCGCCGACCGCAAGGCCGTGGTGCTCCGCTTCCACGTCCTCCATTCCTACTACCCGCT
GGGGTCGCTGGAGTCGATCGTGAACCCGCTGCAGCCGACCCTGGCCACCGAGTACGCCAGCCAGGCCGGCCGCTTCACCC
TCAACATCACCCGCTCCAACGGCTCCGTAGCCATCGACACCGGCGTCGTGCAGGCCACCATCACGCGCACCGTCTTCGAC
CAGAACCCCGTCGCCGTCTTCGCCGTCTCCAAGGTGCTGCTCCCAAAGGAGATGTTCACCAGGGCCGACTCGGCCGCCGT
CGTCGCCGCGGCCCTGGCGCCCCCGCCGGCGGCCGCCAGCTCGATGCCGCCGGAGCCGCCCGAGAGCGCGCGGACGCCGC
CGACGAAGCTGTCCTCGCCCCCCGCGCTGCGCGGCGGGGCCAGGAACGGCACCGCGGTTTCGCCGCCGTCGTCGTCGGCG
GCAAAGGCAACGGCAACTGGGCGGTGGTGTATAGCATTGTTGTATGTACTACCAGCACTGCTGCCTCTGGTATGA-----
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>chr1A_1_TraesCS1A01G284500
GAATCATCACACAATACATTTTTCTTTTTTTCTTTTCTAAGCACGCATTATCTGCCATTCTTGTCTTTCTGAGTTGTTGC
ATTCCAACACAAAACAAGGCCCTCTGGATGAGATAACAG----------CAAGT----------CAGTACTTACTACA--
--TTGAGGATTTGAATGGCCGCTCTGGTCTGGTCCCCCGGG----------------TGAGAAACATTCTTTCCATCACG
CTTGATCGGTTCCAATACAGCTCTATCTATACGATCTTATATCAAGCTGATAGC---ATATCACCGCTCGCTTGCGTGCT
TTTGCGGGCACTTTGGAGCGAAATCAATTCGCGGTAAAGCTTAGCCGCCCTCAATCATTCGAAGGCAAAGCCACTCCATC
AAAATCATTTTACGGCAAAGCTACTCACTCCTTTCATAAACTGTTTTTATCCAGGCGGAGTACTCGCGCTCGTCCCATGT
TAGTATCTCATCAGCACCCGGGCCCGCAAAAGATTCTATCCACGCTGCACCTGTTTTCATAAACTTACCATTACCGCACA
GAGCCACAACAGTGCGCAATTAAACCCG--------------AGCATGACAGCGGGACCCACGCCGCGCCCGGGCC----
--------------------------------------------------------------------------------
-------------------------------------------------CGCCATCATTGCGGGCCTTTTCCCGAATAGT
GCCGTGTGCATGGGAGCTTGGTCACTGGCTGGCAGTGTAGTCCAGTCCAG---------CTCCTCGCTGGAGCCTCTGCT
ACACTCCACTCTACTCCAGAGTCCAGACCCACCCACCCGCCATCTATTTCCACAAAATGCGAATCTCAACGCGCGCAACA
AAGGCTTTGCACCTCCCCCGCACTGAACCCAACC---------CCC-CAGTTGTTTAGCAGTCGGCCGCGATTTTTGTGC
TGAGAAAAAAATACTACTAGCGCGGAGGAAATATTCACTCCGCTCGGGGGCTCGGCTCGGCTCAGGCTCACCACCCCCCA
CCCCCACCGCATCTCGGGCTCGCCTCACTCCTCGGGTCAGTGGCCAGTGGTCAGTGGAGTCG-----CTGCTCTGCTCCC
GGCGGCGCGGCGAGATGCGGGGGCAGGGGCAGATCTCCCGCCGGCTGGTCGTGCTTGCGGCGGTGGCCGGGCTGCTGCTG
CTGGCGTGG---GCGCCGGGTGCGGCTGCCGTGGACGTCCAGGCGGTGCTCGCCCCGTTCCCCGACCTCGCCGGCTTCGC
GCGCCTGCTCGCGTCCAGTCCCGTGGCCCGCGAGCTGGCCGGGCGGTCCTCGCTGACGCTGCTCGCCGTGCCCAACGCCG
ACCTCCCCCAGTCGCCCTCGGCGTTCGCGGCCGCCGCGGGCGCCGACCTCGCCGACGTGCTCCGCTACCACGTCCTCCTC
GAGTACCTCTCCCCCGCCGACCTCCGCCGCCTCCCGGCCGCCGGGAAGCTGGTCACCACGCTGTTCCAGACCACCGGCCG
CGCCTCCGCCGACCTCGGCGCCGTCAACGTCACGGCCGCCG---------------------GGCCGGGCCTCGGCGTCG
TCCGCTCGCCCGCGCCCTTC---CCCGGGTCCAACGCCACCGTGCTCGGCTCCGTCACCTCCGTGCCGTACAACCTGAGC
GTGCTGGCCGTGGACGGCCTCATCGCGCCCTCCGGCTTCGACCTGGCGGCCTCCGAGTCC------CGCCCCCCCGCCGC
CGTCAACATCACCCGCGTCCTCGCCGACGCGCGCGGGTTCAACGTGGCGGCGTCCATGCTGGAGGCCTCCGGCGTGGCGG
AGGAGTTCGAGGGCGACGAGCGCGGCGCCGGCATCACGGTGTTCGTCCCCACCGACGACGCCTTCGCCAGCCTCCCCGCC
GGCGACCGGCTCCAGTCCCTCCCCGCCGACCGCAAGGCCGTGGTGCTCCGCTTCCACGTCCTCCATTCCTACTACCCGCT
GGGGTCGCTGGAGTCGATCGTGAACCCGCTGCAGCCGACCCTGGCCACCGAGTACGCCAGCCAGGCCGGCCGCTTCACCC
TCAACATCACCCGCTCCAACGGCTCCGTAGCCATCGACACCGGCGTCGTGCAGGCCACCATCACGCGCACCGTCTTCGAC
CAGAACCCCGTCGCCGTCTTCGCCGTCTCCAAGGTGCTGCTCCCAAAGGAGATGTTCACCAGGGCCGACTCGGCCGCCGT
CGTCGCCGCGGCCCTGGCGCCCCCGCCGGCGGCCGCCAGCTCGATGCCGCCGGAGCCGCCCGAGAGCGCGCGGACGCCGC
CGACGAAGCTGTCCTCGCCCCCCGCGCTGCGCGGCGGGGCCAGGAACGGCACCGCGGTTTCGCCGCCGTCGTCGTCGGCG
GCAAAGGCAACGGCAACTGGGCGGTGGTGTATAGCATTGTTGTATGTACTACCAGCACTGCTGCCTCTGGTATGAGATCC
GGTGGTGAGCTAGTCCGTCCATTGCCGTCTCCTTGCTGAGCTCGATTCTTTTTTGCCTTGCTTTGGTCACCATTGTTTCT
TCTTTGTTTTACTGCTATATAGTATATTACTAGGAGTGAACCTGTACACAAT-GCATTTGGAAAG-GGGGGAGAAGCTAG
ATGACTCGAGTCGAGGTGTGAGGAAGATTGTGCTGCAAAGCAAAGAAGCGTTCTTTTCACTGCCCGCGTCATGCTGGAAA
AGGGGAAATGATCGCTCCATCCTGTAAAGAATCACACGCGACCAGCCGACGACACTGTGAAATGTTGG---------TGC
TGTTTTTTGGTGGACGCACCGCAAGCTGCTTCCATGGCCATTTTGCTTGCTGAATCGGGCGACGGAGTTTGGGAAGCGAA
AGTGGAGAGGAGGTGGATGGAGCTCGTGGGGTGTGCGTACCGGGGGCGGTGAGGGGAGAGGCGAGGGGCCGGGGGGTAGG
TGGGGTGGCAGTGAGCTGGCGGG-CGTGGGGGTGGCTCG-GCCGTCGTCACAGGCGTCA----------CCCC-GCTAGA
TTCGATCGCCTTTTCGGCTGGCGTCCGTCGCCCCGCCACCGCCACCGCCACCGCCACTCGCGTGTCCGCTTCTTGTCGCC
TCCCGCCGCGTCACCCCCGCGCCCTCGTCTCCACCCGCGCCGTGCCAGCGCGTGACACGACTTGCTTGTGGTCTCGGCCG
TCGACTGCCAGGTAGCAGTTCAGAGCGGAACGTGTGCCCTGCCCAACTTCTCACCCGGCCGGCCTTATCCTCATTGCGGG
GACAGCTCGCGTCGCACATTCACATGCGCATCGGCGCGGCGGGACCTCCTCGTGCCTGACACATGAATGAGCTC------
---------------ACTCGACCCGA------TCGATCTCCCTGAACATCGTCGTCACCAGGCGAGGGACGCAGAGAAAG
ACGACGACGGTGC-----CCACGAGAGCGGCGATCACGCCCACGCCGGCAACAACGGGACTGGAAGCCCTTCTTCCGGCC
TGTCGACGCCG
>chr1D_2
-AATCATCACACTATACATT---CTTGTTTTCTTTTCTAAACACGCATTATCTGCCGTTCTTGCGTTTCTGCGTTGGTGC
ATTCCAA-ACACAAACAGCCCCCCTGGATGAGATAAGAG----------ATAGTAATAGTGAGTCAGTACTTACTACA--
--TAGAGGATTTGAATGGCTGCTCTGGT--GGTCCCCCGGGAGCTCTGGAGAACCGATGGGAAACATTCTTCCCATCACG
CTTGATCGGTTCCAATACAAC----TCTACACGATCTGATCAAGTTCA-----TAGTATATCACCCCTCGCTTGCGTGCT
TTTGCGGCCACTTTGGAGCAAAATCAATTCGCGGTAAAGCTTAGCCTCCCTCAATCATTCTACGGCAAAGCTACTCCATC
AAAATCATTTTACGGCAAAGCTACTCCTCTCATACTT-AACTGTTTTTATCCACGCAGAGTACTGGC-ATCGTTCCATGT
---TATCTCATCAGCACCCGGACCCGCAAAAGATTCTATCCACGCTGCACTTGTCTTTATAAACTTACCATTACCGCACA
GAGCCACAACAGTGAGCAATTAAACCCGGGTCGGGCCGGGCCAGCATGACAGTGGGGCCCGCGCCGCGCCCGGGCC----
--------------------------------------------------------------------------------
-------------------------------------------------CGCCATCATTACGGGCCTTTTCCCGAATAGT
GCCGTGTGCATGGGAGCTTGGTCACTGGCAGTGTAGTAGT-------------------CTCCTCGCTGGAGCCTCTGCT
ACACTCCA----ACTCCAGAGTCCAGACCCACCCACCCGCCATTAATTTCCACAAAACGCGAATCTCAACGCGCAGAACA
AAGGCTTTGCACTTCCCCCGCACTGAACCCAACCAGACCCAACCCCGCAGATGTTTAA---TCGACCGCGATTTTTGTGC
TGAGAAAAAAATA------GCGCCGAGGAAATAT-----------TGGGGCTCGGCTCGGCTCA------CCACCCCCCA
CCCCCACCGCATCTCAGGCTCACCTCACTCCTCG-------GGCCAGTGGTCAGTGGAGCTGCTGCTCTGCTCTGCTCCC
GGCGGCGCGGCGAGATGCGGGGGCAGGGGCAGATCTCCCGCCGGCTGGTCGTCCTTGTAGTGGTGGCCGGGCTGCTGCTG
G---------------CGCCGGCCGCTGCCGTGGACGTCCAGGCGGTGCTCGCGCCGTTCCCCGACCTCGCCGGCTTCGC
GCGCCTGCTCGCGTCCAGCCCCGTGGCCCGGGAGCTGGCCGGGCGGTCCTCACTGACGCTGCTCGCCGTGCCCAACGCCG
ACCTCCCGCAGTCGCCCTCGGCGTTCGCGGCCGCCGCGGGCGCCGACCTCGCCGACGTGCTCCGCTACCACGTCCTCCTC
GAGTACCTCTCCCCCGCCGACCTCCGCCGCCTCCCGGCCACCGGGAAGCTGGTCACCACGCTGTTCCAGACCACCGGCCG
CGCCTCCGCCGACCTCGGCGCCGTCAACGTCACGGCCGCCG---------------------GGCCCAGCCTGGGCGTCG
TCCGCTCGCCGGCGCCCTTC---CCCGGGTCCAACGCCACCGTGCTCGGCTCCGTCACCTCCGTGCCGTACAACCTGAGC
GTGCTGGCCGTGGACGGGCTCATCGTGCCCTCCGGCTTCGACCTGGCGGCGTCCGAGTCC------CGGCCCCCCGCCGC
CGTCAACATCACCCGCGTCCTCGCCGACGCGCGCGGGTTCAACGTGGCGGCGTCCATGCTGGAGGCGTCCGGCGTGGCGG
AGGAGTTCGAGGGCGACGAGCGCGGCGCGGGCATCACGGTGTTCGTCCCCACCGACGACGCCTTCGCCAGCCTCCCCGCC
GGCGACCGGCTCCAGTCCCTCCCCGCCGACCGCAAGGCGGTGGTGCTCCGCTTCCACGTCCTCCACTCCTACTACCCGCT
GGGGTCGCTGGAGTCGATCGTGAACCCGCTGCAGCCGACCCTGGCCACCGAGTACGCCAGCCAGGCCGGCCGCTTCACCC
TCAACATCACCCGCTCCAACGGCTCCGTGGCCATCGACACCGGCGTCGTGCAGGCCACCATCACGCGCACCGTCTTCGAC
CAGAACCCCGTGGCCGTCTTCGCCGTCTCCAAGGTGCTCCTCCCCAAGGAGATGTTCACCAGGGCCGACTCGGCCGCCGT
CGTCGCGGCGGCCCTGGCGCCCCCGCCGGCCGCCTCGAACTCGATGCCGCCGGAGCCGCCCGAGAGCGCGCGGACGCCGC
CGACGAAGCTGTCCTCGCCGCCCGCGCTGCGCGGCGGGGCCAGGAACGACACTGCGGTTTCGCCGCCGTCGTCGTCGACG
GCAAAGGCAACAGCAATTGGGCGGTGGTGTATAGAATTGTTGTATGTACTACCAGTACTGCTGCCTCTGGTATGAGATCC
GGTGGTGAGCTAGTC-GTCCATTGCCGTCTCCTTGCTGAGCTCAATTCTTTTTTGCCTTGCTTTTGTTACAATTGTTTCT
TCTTTGTTGCTCCTAC---TAGTATATTACTAGGAGTAAACCTGTACACAAT-GGGTTTGAAAAGGTGGGGAGAAGGTAG
ATGACTCGAG-------GTGAAGAAGATTGAGCTGCAAAGCAAAGCAGCGTTCTTTTCACTGCCTGCATCATGCTGAAAA
AGGAGAAATGATCGCACCATCCTGTAAAGAATCACACGCGACCGGCCGACGACAATGTTAAATGTTGGTTCTACCATTGC
TGTTTCTTCGTGGA-----CGCAAGCTGCTTCCATGGCCATTTTGCT----GAATCCGGCGACGGAAGTGGGG------A
AGTGGAGCGGAGGTGGAGGGAGGTTGCGGGGTGCGCGCACCGGTGGCGGTGAGGGGAGAGGCGAGGGGCCGGGTGGTAGG
TGGGGTGGCAGTGAGCTGGCGGGGCGTGGGGGTGGCTCGGGCCGTCGTCACAGGCGTCAGCGCGCGCGCCCCC-GCTAGA
TTCGATCGCCTTTTCGGCTTGCCTCCGTCG------------------CACCGCCACTTGCGTGTTCGCTTCTTGTCGCC
TCCCGCCGCGTCACC------------------------CCGTGCCAGCGCGTGACACGACTTGCTTGTGGCCTCGGCCG
TCGACTGCCCGGTAGCAGTTCAGAGCGGAACGTGTGCCCTGCCCAACTTCTCACCCGGCCGGCCTTATCCTCATTTCGGG
GACAGCTCGCGTCGCACATTCACATGCGCATCGGCGCGGCGGGACCTCCTCGAGCCTGACGCATGAATGAGCTCGAGCCC
ACCTCTGCGTGGACTCCAGCGATCGGCCTCACTCGATCTCCCTGCACAT---CGTCACCAGGCGAGGGATGCAGAG-AAG
ACGACGACGGTGC-----CCACGAGAGCGGCGATCGCGCCCACGCCGGCAACAACGGGACTGGGAACCCTTCTTCCGGCC
TGTCGACGCCG
>chr1B_2
-AATCATCATACAATACATTTTTGTTGTTTTCTTTTCTGAACACGCACTATCTGCCGTTCTTGTGTTTCCGCGTTGGTGC
ATTCCAA-ACACAAACAGCCCCCCTGGATGGCATAAGAGATATAGACACATAGTAATAGTAATTCAGTACTTACTACATA
CGTAGAGGATTTGAATGGCTGGTCTGGTCTGGTCCCCCGGGAGCATTGGAGACCCGATGAGAAACATTCTTTCCATCACG
CTCGATCGGTTCCAATACAAC----TCTATACGAGATCTTATCAAGCTGATAGTAGTATATCACCGCTCGCTTGCGTGCT
TTTGCGGCCACTTTGGAGCAAAATCAATTCGCGGTAAAGCTTAGCCTCCCTCAATCATTCTACGGTAAAGCTACTCCATC
AAAATCATTTTACGGCAAAGCTACTCACTCCTTTCATAAACTGTTTTTATCCAAGCAGAGTACTCGC-CTCGTCCCATGT
---TATCTCATCAGCACCCGGACCCGCAAAAGATTCTATCCATGCTACACTTGTCTTTATAAACTTACCATTACCGCACA
GAGCCACAACAGTGGGCAATTAAACCCGGC-----CCGGGCCAGCATGACAGCGGGACCCACGCCACGCCCGGGCGGACT
CGGCTCCCCTGACGTACTGCAGGGCGCAGTTGGGTCGCTGACAGGTGGGCCAACTTGCTTTCGGGCCCACCTGTCAATGG
CCCAACTGCGCCCTGCAGTACGTCAGAGGAGCCTCGTCCCGCCCGGGGGCGCCATCATTACGGGCCTTTTCCCGAATAGT
GCCGTGTGCATGGGAGCTTGGTCACTGGCTGGCAGTGTAGTCCAGTCCAGTTCTTCTCCCTCCTCGCTGGAGCCCCTGCT
ACACTCCAC------------TCCAGACCCACCCACCCGCCATTAATTTCCACAAAACGCGAATCTCAACGCGCGGAACA
AAGGCTTTGCACTTCCCTCGCACTGAACCCAACCAGACCCAACCCC-CAGATGTTTAA---TCGGCCGCGATTTTTGTGC
TGAGAAAAAAATA------GCGCCGAGGAAATATTCATTCCACTCTGGGGCTCGGCTCGGCTCA------CCATCCCCCA
CCCCCACCGCATCTCAGGCTCACCTCACTCCTCG-------GGCCAGTGGTCAGTGGAGCTGCTGCTCTGCTCTGCTCCC
GGCGGCGCGGCGAGATGCGGGGGCAGGGGCAGATCTCCCGCCGGCTGGTTGTTCTTATGGTGGTGGCCGGGCTGCTGCTG
CTGGCGTGC---GCGCCGCCGGCCGCTGCCGTGGACGTCCAGGCGGTGCTCGCGCCGTTCCCCGACCTCGCCGGCTTCGC
GCGCCTGCTCGCGTCCAGCCCCGTGGCCCGGGAGCTGGCCGGGCGGTCCTCGCTGACGCTGCTCGCCGTGCCCAACGCCG
ACCTCCCGCAGTCGCCGTCGGCGTTCGCGGCCGCCGCGGGGGCCGACCTCGCCGACGTGCTCCGCTACCACGTCCTCCTC
GAGTACCTCTCCCCCGCCGACCTCCGCCGCCTCCCGGCCGCCGGGAAGCTGGTCACCACGCTGTTCCAGACCACCGGCCG
CGCCTCCGCCGACCTCGGCGCCGTCAACGTCACGGCCGCCG---------------------GGCCCAGCCTGGGCGTCG
TCCGCTCGCCGGCGCCCTTC---CCCGGGTCCAACGCCACCGTGCTCGGCTCCGTCACCTCCGTGCCGTACAACCTCAGC
GTGCTCGCCGTGGACGGGCTCATCGTGCCGTCCGGCTTCGACCTGGCGGCGTCCGAGTCC------CGGCCCCCCGCCGC
CGTGAACATCACCCGCGTCCTGGCCGACGCGCGCGGGTTCAACGTGGCGGCGTCCATGCTGGAGGCGTCCGGCGTGGCGG
AGGAGTTCGAGGGCGACGAGCGCGGCGCGGGCATCACGGTGTTCGTCCCCACCGACGACGCCTTCGCCAGCCTCCCCGCC
GGCGACCGGCTCCAGTCCCTCCCCGCCGACCGCAAGGCCGTGGTGCTCCGCTTCCACGTCCTCCACTCCTACTACCCGCT
GGGGTCGCTGGAGTCGATCGTGAACCCGCTGCAGCCGACCCTGGCCACCGAGTACGCCAGCCAGGCCGGCCGCTTCACCC
TCAACATCACCCGCTCCAACGGCTCCGTGGCCATCGACACCGGCGTCGTCCAGGCCACCATCACGCGCACCGTGTTCGAC
CAGAACCCCGTGGCCGTCTTCGCCGTCTCCAAGGTGCTGCTCCCCAAGGAGATGTTCACCAGGGCCGACTCGGCCGCCGT
CGTGGCCGCGGCCCTGGCGCCCCCGCCAGCCACCTCGAACTCGATGCCGCCGGAGCCGCCCGAGAGCGCGCGGACGCCGC
CGACGAAGCTGTCCTCGCCGCCCGCGCTGCGCGGCGTGACCAGGAACGACACTGCGGTTTCGCCGCCGTCGTCGTCGTCG
GCAAAGGCAGCAGCAATTGGGTGGTGGTGTATAGCATTGTTGTATC---------TACTGCTGCCTCTGGTATGAGATCC
GGCGGTGAGCTAGTC-GTCCATTGCCGTCTCCTTGCTGAGCTCAATTCTTTTTTGCCTTGCTTTTGTTACAATTGTTTCT
TCTTTGTTACTCCTGC---TAGTATATTACTAGGAGTTAACCTGTACACAATGGGGTTTGAAAAGTGGGGGAGAAGGTAG
ATGACTCGAG-------GTGGAGAAGATTGAGCTGCAAAGCAAAGCGGCATTCTTTTTACTGCCCGCGTCATGCTGAAAA
AGGAGAAATGATCGCACCATCCTGTAAAGAATCACACGCGACCAGCCGACGACAATGTTAAATGTTGGTTCTACCAGGGC
TGTTTCTCCGTGGA-----CGCAGCGCAAGCTGCTT-CCATTTTGCT----GAATCGGGCGACGGAAGTGAGTGGGGAAG
GGGGCTTGCGGC--------------CGGGGTGCGCGCACCGGTGGCGGTGAGGGGAGAGGCGAGT----GGGTGGTAGG
TGGGGTGGCAGTGAGCTGGCGGGGCGTGGGGGTGGCTC-GGCCGTCGTCACAGGCGTCAGCGCGCGCGCCCCCCGCTAGA
TTCGATCGCCTTTTCGGCTTGCGTCCGTCTCCCCGCCACCGCCACCGCCACCGCCACTTGCGTGTCCGCTTCTTGTCGCC
TCCCGCCGCGTCACCCC-GCGCTCTCGTCTCCACCCTCGCCGTGGCAGCGCGTGACACGACTTGCTTGTGGTCTCAGCCG
TCGACTGCCCGGTAGCAGTTCAGAGCGGAAAGCGTGCCCTGCGCAACTTCTCAC----CCGGCCTTATCCTCATTTCGGG
GACAAGCCGCGTCGCACATCCACATGCGCATCAGCGCGGCGGGGCCTCCTCGTGCCTGACACATGAATGAGCTCGAGCCC
ACCTCTAGTGAGCTCACTCGACCCGA------TCGATCTCCCTTGACAT---CGTCACCAGGCGAGGCATGCAGAG-AAG
ACGACGACGATGCCCACGCCACGAGAGCGGCGATCACGCCCACGCCGGCAAC---GGGACTGGAAACCCTTCTTCAGGTC
TGTCGACGCCG
>chr3D_1052
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-----------------------------------------------------------------GCCGCGCTGCTGCTG
CTGCTGCCC---GCCCCGGCCGCCGGG---GTCAACGTGACGGCCGTGCTCGCGGCGTTCCCCGGCTTCTCCGACTTCGC
GCGGCTGCTGGCGTCCTCCCCGGTGGCCGCGGAGCTGGCGGGGCGGTCGTCGCTCACGCTGCTGGCCGTGCCCAACGCCA
ACCTGCCGCGCTCACCCTCCGCTTTCGCCGCGGCCGCCGGCGCCGACCTCGCCGACGTGCTGCGCTACCACGTCCTCCTC
GAGTACCTCTCCCCGTCCGACCTCGCCCGCGTCCCCGCCTCGGGCAGGCTCGTCACCACGCTCTTCCAGACCACCGGCCG
CGCGCCCTCCGACCTCGGCGCCGTCAACCTCACGGCCACTGCCGCGGGCG---------------CGGC---CGTCGTCG
TCCGGTCGCCGTCCCCGTCC---CCGGGGTCGAACGCCACCGTCCTCGGCGCCGTCACCAGGGAGCCGTACAACCTCAGC
GTGCTGGCCGTGGGCGGCCTCATCGTGCCCTCCGGCTTCGACATCGCCGCGTCGGGCTCCGAGAGCCGCCCGTCCCCCGC
GGTGAACATCACCCGCGTCCTCACCGACGCGCGGGGGTTCAACGTGGCCGCCTCCATGCTCGAGGCCTCGGGCGTGGCGG
ACGACTTCGAGGCCGACGAGCGCGGCGCCGGCATCACCATCTTCGTCCCCACCGACGACGCCTTCGCGGCGCTCCCGGCC
ACGGACCGCCTCCAGTCCCTCCCCGCCGACCGCAAGGCCGTGGTGCTGCGCTTCCACGTGCTGCACTCCTACTACCCGCT
GGGGTCCCTCGAGTCCATCGTGAACCCCGTCCAGCCCACGCTCGCCACCGAGTGCACCG---AGGCCGGCCGCTTCACGC
TCAACATCACGCGCTTCAGCGGCTCCGTCGCCATCGATACGGGCGTCGTGCAGGCGTCCATCACTCGCACGGTGTTCGAC
CAGAATCCCGTCGCGGTCTTCGCCGTCTCCAAGGTCCTGCTGCCCAAGGAAATGTTCA----------------------
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>chr3A_1052
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-----------------------------------------------------------------GCCGCGCTGCTGCTG
CTGCTGCTGCCGGCCCCGGCCGCCGGG---GTCAACGTGACGGCCGTGCTCGCGGCGTTCCCCGGCTTCTCCGACTTCGC
GCGGCTGCTCGCGTCCTCCCCGGTGGCCGCGGAGCTGGCGGGGCGGTCGTCGCTCACGCTGCTGGCCGTGCCCAACGCCA
ACCTGCCGCGCTCGCCCTCCGCCTTCGCCGCGGCCGCCGGCGCCGACCTCGCCGACGTGCTGCGCTACCACGTCCTCCTC
GAGTACCTCTCCCCGCCCGACCTCGCCCGCGTCCCCGCCTCGGGCAGGCTCGTCACCACGCTCTTCCAGACCACCGGCCG
CGCGCCCTCCGACCTCGGCGCCGTCAACCTCACGGCCACTGCCGCGGGCGGCGGCAGCAGCAGCTCCGC---CGTCGTCG
TCCGCTCGCCGTCCCCGTCC---CCGGGGTCGAACGCCACCGTCCTCGGCGCCGTGACCAGGGAGCCGTACAACCTCAGC
GTGCTGGCCGTGGGCGGCCTCATCGTGCCCTCCGGCTTCGACATCGCCGCGTCGGGCTCCGAGACCCGCCCGTCCCCGGC
GGTGAACATCACCCGCGTCCTCACCGACGCGCGCGGCTTCAACGTGGCCGCCTCCATGCTCGAGGCCTCGGGCGTGGCGG
ACGACTTCGAGGCCGACGAGCGCGGCGCCGGCATCACCATCTTCGTCCCAACCGACGACGCCTTCGCGGCCCTCCCCGCC
ACCGACCGCCTCCAGTCCCTCCCCGCCGACCGCAAGGCCGTGGTGCTGCGCTTCCACGTGCTGCACTCCTACTACCCGCT
GGGGTCCCTGGAGTCCATCGTGAACCCCGTCCAGCCCACGCTCGCCACCGAGTGCACCG---AGGCCGGCCGCTTCACGC
TCAACATCACGCGCTTCAACGGCTCCGTCGCCATCGACACCGGCGTCGTGCAGGCGTCCATCACCCGCACGGTGTTCGAC
CAGAATCCCGTGGCGGTCTTCGCCGTCTCCAAGGTCCTGCTGCCCAAGGAAATGTTCA----------------------
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>chr3B_1105
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-----------------------------------------GGCCGTGCTCGCGGCGTTCCCCGGCTTCTCCGACTTCGC
GCGGCTGCTGGCGTCCTCCCCGGTGGCCGCGGAGCTGGCGGGGCGGTCGTCGCTCACGCTGCTGGTCGTGCCCAACGCCA
ACCTGCCGCGCTCGCCCTCCGCCTTCGCCGCGGCCGCCGGCGCCGACCTCGCCGACGTGCTGCGCTACCACGTCCTCCTC
GAGTACCTCTCCCCGTCCGACCTCGCCCGCGTCCCCGCCTCCGGGAGGCTCGTCACCACGCTCTTCCAGACCACCGGCCG
CGCGCCCTCCGACCTCGGCGCCGTCAACCTCACGGCTGCCG---------------------GCTCCGC---CGTCGTCG
TCCGCTCGCCGTCCCCATCC---CCGGGGTCGAACGCCACCGTCCTCGGCGCCGTCACCAGGGAGCCGTACAACCTCAGC
GTGCTCGCCGTGGGCGGCCTCATCGTGCCCTCCGGCTTCGACATCGCCGCGTCCGGCTCCGAGAGCCGCCCGTCCCCGGC
GGTGAACATCACCCGCGTCCTCACCGACGCGCGGGGGTTCAACGTGGCCGCCTCCATGCTCGAGGCCTCTGGCGTCGCGG
ACGACTTCGAGGCCGACGAGCGCGGCGCCGGCATCACCATCTTCGTCCCCACCGACGACGCCTTCGCGGCCCTCCCGGCC
ACCGACCGCCTCCAGTCCCTCCCCGCCGACCGCAAGGCCGTGGTGCTGCGCTTCCACGTGCTGCACTCCTACTACCCGCT
GGGGTCCCTCGAGTCCATCGTGAACCCCGTCCAGCCCACGCTCGCCACCGAGTGCACCG---AGGCCGGCCGCTTCACCC
TCAACATCACGCGCTTCAACGGCTCCGTCGCCATCGACACCGGCGTCGTGCAGGCGTCCATCACCCGCACGGTGTTCGAC
CAGAATCCCGTCGCGGTCTTCGCCGTCTCCAAGGTCCTGCTGCCCAAGGAAATGTTC-----------------------
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>chr4D_1287
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---------------------------------------------------------------GCTACCACGTCCTCCTC
GAGTACCTCTCCCCGTCCGACCTCGCCCGCGTCCCCGCCTCGGGGAGGCTCGTGACCGCGCTCTTCCAGACCACCAGCCG
CGCGGCCTCCGACCTCGGCGTCGTCAACCTCACGGCCGCAG---------------------GCTCCGC---CATCGTCG
TCCGTTCCCCCGCGCTGTCGGCTCCCGGGTCGAACGCCACCGACCTCGGCGCCGTCACCAGGGAGCCGTACAACACCAGC
GTGCTCGCCGTGGGCTGCCTCATCGTGCCCTCCGGCTTCGACACCACCGCGTCCGGCTCCGAGAGCCGCCCGTCCCCCGT
GGTCAACA------------TCACCGACGCGCGCGGGTTCAACGTGGCCGCCTCCATGCTCGAGGCCTCTGGCGTGGCGG
ACGACTTCGAGGCCGAAGAGCGGGGCGCCGGCATCACCATCTTCGTCCCCACCGACGACGCGTTCGTGGCCCTCCCCGCC
ACCGACCGCCTCCAGTCCCTCCCCTCCGACTGCAAGGCCGTGGTGCTGC---------------ACTCCTACCACCCGCT
CGGGTCCCTC-AGTCCATTGTGAACCCCGTCCAGCCCACGCTCGCCACCGAGTGCAATG---AGGCCGGCCGCTTCATGC
TCAATATCACGCGCTTCAACGGCTCCGTCGCGATCGACACCGGCGTCGTGCAGGCGTCCCACACCTGCACGGTGTTCGAC
CAAAATCCCGTGGCGATCTTCGCCGTCTCCAAGGTCCTGCTGCCCAAGGAAATGTTC-----------------------
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>chr4A_1287
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---------------------------------------------------------------GCTACCACGTCCTCCTC
GAGTACCTCTCCCATTCCGACCTCGCCCGCGTCCCCGCCTCGGGGAGGCTCGTGACCACGCTCTTCCAGACCACCAGCCG
CACGCCCTTCGACCTCGGCGTCGGCAACCTCATGGCCGCAG---------------------GCTCCGC---CATCTTCG
TCCGTTCCCCCGCACTGTCGACTCCTGGGTCGAACGCCACCGAGCTCGGCGCCGTCACCAGGGAGCCGTACAACACCAGT
GTGCTCGCCGTGGGCTGCCTCATCGTGCCCTCCGGCTTCGACATCACCGCGTCCGGCTCTGAGAGCCGCCCGTCCCCCGT
GGTCAACA------------TCACCGACGCGCGCGGGTTCAACGTGGCCGCCTCCATGCTCGAGGCCTCCGGCGTGGCGG
ACGACTTCGAGGCCGAAGAGCAGGGCGCCGGCATCACCATCTTCGTCCCCACCGACGACGCGCTCGCGGCCCTCCCCGCC
ACCGACCGCCTCCAGTCCCTCCCCTCCGACTGCAAGGCCGTGGTGCTGC---------------ACTCCTACCACCCGCT
CGGGTCCCTC-AGTTCATCGTGAACCCCGTCCAGCACATGCTCGCCACCGAGTGCAATG---AGGCCGGCAGCTCCACGC
TCAATATCACGCGCTTCAACAGCTCCGTCGCGATCGACACCGGCGTCGTGCAGGCGTCCATCACCTGCACGGTGTTCGAC
CAAAATCCCGTGGCGATCTTCGCCGTCTCCAAGGTCCTGCTGCCCAAGGAAATGTTC-----------------------
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>chr4A_1287
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---------------------------------------------------------------GCTACCACGTCCTCCTC
GAGTACCTCTCCCATTCCGACCTCGCCCGCGTCCCCGCCTCGGGGAGGCTCGTGACCACGCTCTTCCAGACCACCAGCCG
CGCGCCCTTCGACCTCGGCGTCGGCAACCTCATGGCCGCAG---------------------GCTCCGC---CATCTTTG
TCCGTTCCCCCGCGCTGTCGACTCCCGGGTCGAACGCCACCGAGCTCAGCGCCGTCACCAGGGAGTCATACAACACCAGT
GTGCTCGCCATGGGCTGCCTCATCGTGCCCTCCGGCTTCGACATCACCGCGTCCGGCTCCGAGAGCCGCCCGTCCCCCGT
GGTCAACA------------TCACCGACGCGCGCGGGTTCAACGTGGCCGCCTCCATGCTCGAGGCCTCCGGCGTGGCGG
ACGACTTCGAGGCCGAAGAGCGGGGCGCCGGCATCACCATCTTCGTCCCCACCGACGACGCGCTCGCGGCCCTCCCCGCC
ACCGACCGCCTCCAGTCCCTCCCCTCCGACTGCAAGGCCGTGGTGCTGC---------------ACTCCTACCACCCGCT
CGGGTCCCTC-AGTTCATCGTGAACCCCGTCCAGCCCATGCTCGCCACCGAGCGCAATG---AGGCCGGCAGCTCCACGC
TCAATATCACGCGCTTCAACGGCTCCATCGCGATCGACACCGGCATCGTGCAGGCGTCCATCACCTGCACGGTGTTCGAC
CAAAATCCCGTGGCGATCTTCGCCGTCTCCAAGGTCCTGCTGCCCAAGGAAATGTTCGACC-------------------
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>SNPs
S-------------------------S-------------S---------------S-------S------S----S---
-------S---S--SS--S---S-------------S------------SS-----------------------------
---S---------------S------------------------------------------------------------
-------------------S-SSSS------------S---------------S--------------------------
-------S-----------S--------------------------S-------------S-S--------S--------
-----------------------------------------------------S--S----------S------------
SSS------------------S----------------------------S---S--S----------------------
--------------S-----------------------------------------------------------------
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-----------------------------------------------------------S--------------------
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---------SSS-------------------------------SS------------S-----------------S----
------------S-------------------------------------S------SSSS-------------------
-------------SSSSSS----S-------------S---S---S------------------SSSSSS----------
---------------S-----S------------SSSSSSS------------------SS-------------------
----------------------------------------------------S----S--S-------------------
-------------------SS--S-----------------------------S--------------------------
------------------S-----------S-------------------------------------------------
-------S------------------------------------------------------------------------
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-------------------------S------------------------S-----------------------------
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-----------------------------------------------------------------S--------------
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----------------------------S---------------------------------------------------
--------------------------------------------S-----------------------------------
------------------------------S---S-S-S-----------------------------------------
-------------------S----------------------------S---S------------------------S--
-----------S----S--------------------------------------S------------------------
---------------S---------------------------S--------------------S--S--S---------
--------SSS-SSSSSSS------------------S----------------SS----S---------------S---
----------SSSSSSS----S--------S--------------S------------------------------S---
---S-----------S--------------------------------------S---S---------------------
-----S--S-----SSSSS----------------------------SSSS---------------SS-S---SS-SS--
-------S---------S----S-S-S------S---S-----S-----------------------------S------
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-------------------S--------------------------------------S---------------------
-----------------S----S-------------S-------------------------------------------
---------S-----------------------------------------------------------------S----
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--------------------------------------------S----SSS-----------------S------S---
-----------------------------------------------------------------S--------------
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>forward_502
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--GTATCTCATCAGCACCCGGG----------------------------------------------------------
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>reverse_2536
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-------------------------------------------------------CACTGCTGCCTCTGGTATGA-----
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>forward_891
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-----------------------------------------------------------------------GCCTCTGCT
ACACTCCACTC---------------------------------------------------------------------
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>reverse_2766
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---------------------------------------------AAGCGTTCTTTTCACTGCCC---------------
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