Multiple sequence alignment - TraesCS1A01G282600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G282600 chr1A 100.000 3387 0 0 1 3387 480606739 480603353 0.000000e+00 6255
1 TraesCS1A01G282600 chr1D 91.023 1515 101 18 1149 2655 379509660 379508173 0.000000e+00 2012
2 TraesCS1A01G282600 chr1D 93.483 491 21 7 656 1142 379510201 379509718 0.000000e+00 719
3 TraesCS1A01G282600 chr1D 79.916 478 55 18 23 496 379510743 379510303 2.540000e-81 313
4 TraesCS1A01G282600 chr1B 90.470 1427 87 23 1138 2542 508709085 508707686 0.000000e+00 1836
5 TraesCS1A01G282600 chr1B 87.523 545 34 13 610 1142 508709654 508709132 1.740000e-167 599
6 TraesCS1A01G282600 chr1B 83.746 566 56 19 2646 3198 508706633 508706091 1.400000e-138 503
7 TraesCS1A01G282600 chr5D 81.843 727 90 21 2661 3362 246344238 246343529 1.050000e-159 573
8 TraesCS1A01G282600 chr5B 82.124 565 62 19 2698 3240 281066233 281065686 6.670000e-122 448
9 TraesCS1A01G282600 chr5A 80.597 201 34 4 32 228 485610095 485609896 2.110000e-32 150
10 TraesCS1A01G282600 chr3B 79.018 224 43 3 22 243 628719092 628719313 2.110000e-32 150
11 TraesCS1A01G282600 chr3B 88.618 123 13 1 998 1119 22845148 22845026 7.570000e-32 148
12 TraesCS1A01G282600 chr7A 83.571 140 18 5 21 158 132582846 132582982 3.550000e-25 126


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G282600 chr1A 480603353 480606739 3386 True 6255.000000 6255 100.000000 1 3387 1 chr1A.!!$R1 3386
1 TraesCS1A01G282600 chr1D 379508173 379510743 2570 True 1014.666667 2012 88.140667 23 2655 3 chr1D.!!$R1 2632
2 TraesCS1A01G282600 chr1B 508706091 508709654 3563 True 979.333333 1836 87.246333 610 3198 3 chr1B.!!$R1 2588
3 TraesCS1A01G282600 chr5D 246343529 246344238 709 True 573.000000 573 81.843000 2661 3362 1 chr5D.!!$R1 701
4 TraesCS1A01G282600 chr5B 281065686 281066233 547 True 448.000000 448 82.124000 2698 3240 1 chr5B.!!$R1 542

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
352 356 0.036952 CGGCCAGTGAGTGATCTGTT 60.037 55.0 2.24 0.0 0.00 3.16 F
1376 1457 0.178068 TAACCAGCCGGCAAGATCTC 59.822 55.0 31.54 0.0 34.57 2.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2232 2315 0.319641 GAAGACGTCGAAGTTGGCCT 60.320 55.0 10.46 0.0 0.0 5.19 R
3363 4477 0.028110 CGGGCTTTAGATTTCGCTGC 59.972 55.0 0.00 0.0 0.0 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 0.824109 AGCGACGATCAAATGGGAGA 59.176 50.000 0.00 0.00 0.00 3.71
61 62 3.827008 TCAAATGGGAGATCGAGAAGG 57.173 47.619 0.00 0.00 0.00 3.46
79 80 2.659428 AGGCCAATACATTTGGAGAGC 58.341 47.619 5.01 0.00 42.06 4.09
102 103 5.163834 GCTTGAGCTTGAGAAGAAGAGATTG 60.164 44.000 0.00 0.00 38.21 2.67
106 107 5.068636 AGCTTGAGAAGAAGAGATTGCAAA 58.931 37.500 1.71 0.00 0.00 3.68
107 108 5.711036 AGCTTGAGAAGAAGAGATTGCAAAT 59.289 36.000 1.71 0.00 0.00 2.32
108 109 6.028987 GCTTGAGAAGAAGAGATTGCAAATC 58.971 40.000 1.71 4.96 0.00 2.17
109 110 6.349115 GCTTGAGAAGAAGAGATTGCAAATCA 60.349 38.462 1.71 0.00 0.00 2.57
110 111 6.492007 TGAGAAGAAGAGATTGCAAATCAC 57.508 37.500 1.71 4.00 0.00 3.06
111 112 5.999600 TGAGAAGAAGAGATTGCAAATCACA 59.000 36.000 1.71 0.00 0.00 3.58
112 113 6.072838 TGAGAAGAAGAGATTGCAAATCACAC 60.073 38.462 1.71 1.32 0.00 3.82
113 114 4.675190 AGAAGAGATTGCAAATCACACG 57.325 40.909 1.71 0.00 0.00 4.49
138 141 1.956477 GCGGAGGATGCCAATAATGTT 59.044 47.619 0.00 0.00 0.00 2.71
141 144 3.822735 CGGAGGATGCCAATAATGTTGAT 59.177 43.478 0.00 0.00 0.00 2.57
142 145 4.320714 CGGAGGATGCCAATAATGTTGATG 60.321 45.833 0.00 0.00 0.00 3.07
149 152 4.096231 TGCCAATAATGTTGATGGACGAAG 59.904 41.667 0.00 0.00 34.82 3.79
158 161 0.462759 GATGGACGAAGGCCTCTTGG 60.463 60.000 5.23 0.00 35.27 3.61
178 181 2.523015 GACGAGCATGCAAAGAATTGG 58.477 47.619 21.98 0.51 37.02 3.16
185 188 2.529780 TGCAAAGAATTGGCTTGTGG 57.470 45.000 0.00 0.00 37.02 4.17
190 193 1.856629 AGAATTGGCTTGTGGGGATG 58.143 50.000 0.00 0.00 0.00 3.51
200 203 2.496899 TGTGGGGATGAAGAAGAAGC 57.503 50.000 0.00 0.00 0.00 3.86
212 216 5.538118 TGAAGAAGAAGCTCAACGACATAA 58.462 37.500 0.00 0.00 0.00 1.90
213 217 5.635280 TGAAGAAGAAGCTCAACGACATAAG 59.365 40.000 0.00 0.00 0.00 1.73
232 236 2.045242 AGTACGAGGCAGCGAGGA 60.045 61.111 6.78 0.00 34.83 3.71
233 237 1.448922 GAGTACGAGGCAGCGAGGAT 61.449 60.000 6.78 0.00 34.83 3.24
244 248 1.670406 GCGAGGATGGCTATGGCAG 60.670 63.158 2.58 0.00 42.43 4.85
256 260 1.329913 TATGGCAGCAGCGGAAGAGA 61.330 55.000 0.00 0.00 43.41 3.10
293 297 3.064324 GCAGGCGGCAAGAATGGT 61.064 61.111 13.08 0.00 43.97 3.55
295 299 1.675310 CAGGCGGCAAGAATGGTCA 60.675 57.895 13.08 0.00 0.00 4.02
296 300 1.033746 CAGGCGGCAAGAATGGTCAT 61.034 55.000 13.08 0.00 0.00 3.06
297 301 1.033746 AGGCGGCAAGAATGGTCATG 61.034 55.000 13.08 0.00 0.00 3.07
299 303 1.031571 GCGGCAAGAATGGTCATGGA 61.032 55.000 0.00 0.00 0.00 3.41
300 304 1.019673 CGGCAAGAATGGTCATGGAG 58.980 55.000 0.00 0.00 0.00 3.86
301 305 0.743097 GGCAAGAATGGTCATGGAGC 59.257 55.000 0.00 0.00 0.00 4.70
303 307 1.404391 GCAAGAATGGTCATGGAGCAG 59.596 52.381 4.38 0.00 43.30 4.24
304 308 2.022195 CAAGAATGGTCATGGAGCAGG 58.978 52.381 4.38 0.00 43.30 4.85
305 309 0.106819 AGAATGGTCATGGAGCAGGC 60.107 55.000 4.38 0.00 43.30 4.85
306 310 1.442526 GAATGGTCATGGAGCAGGCG 61.443 60.000 4.38 0.00 43.30 5.52
307 311 2.898920 AATGGTCATGGAGCAGGCGG 62.899 60.000 4.38 0.00 43.30 6.13
323 327 2.590007 GGCATAGCTGGCGTCTGG 60.590 66.667 0.00 0.00 38.28 3.86
324 328 2.187946 GCATAGCTGGCGTCTGGT 59.812 61.111 3.60 3.60 0.00 4.00
325 329 2.176273 GCATAGCTGGCGTCTGGTG 61.176 63.158 8.98 0.00 0.00 4.17
326 330 1.517361 CATAGCTGGCGTCTGGTGA 59.483 57.895 8.98 0.00 0.00 4.02
327 331 0.807667 CATAGCTGGCGTCTGGTGAC 60.808 60.000 8.98 0.00 39.70 3.67
334 338 1.517257 GCGTCTGGTGACTGATCCG 60.517 63.158 0.00 0.00 40.63 4.18
340 344 2.660064 GGTGACTGATCCGGCCAGT 61.660 63.158 23.42 23.42 46.51 4.00
349 353 0.689080 ATCCGGCCAGTGAGTGATCT 60.689 55.000 2.24 0.00 0.00 2.75
352 356 0.036952 CGGCCAGTGAGTGATCTGTT 60.037 55.000 2.24 0.00 0.00 3.16
355 359 2.028112 GGCCAGTGAGTGATCTGTTACA 60.028 50.000 0.00 0.00 0.00 2.41
370 375 6.730960 TCTGTTACACTCGAACTTTGTTTT 57.269 33.333 0.00 0.00 0.00 2.43
373 378 8.332464 TCTGTTACACTCGAACTTTGTTTTATG 58.668 33.333 0.00 0.00 0.00 1.90
376 381 9.919348 GTTACACTCGAACTTTGTTTTATGTTA 57.081 29.630 0.00 0.00 0.00 2.41
379 384 6.299966 CACTCGAACTTTGTTTTATGTTAGCG 59.700 38.462 0.00 0.00 0.00 4.26
386 391 5.351233 TTGTTTTATGTTAGCGTGTCCAG 57.649 39.130 0.00 0.00 0.00 3.86
387 392 4.633175 TGTTTTATGTTAGCGTGTCCAGA 58.367 39.130 0.00 0.00 0.00 3.86
388 393 5.242434 TGTTTTATGTTAGCGTGTCCAGAT 58.758 37.500 0.00 0.00 0.00 2.90
391 396 1.438651 TGTTAGCGTGTCCAGATTGC 58.561 50.000 0.00 0.00 0.00 3.56
396 401 0.390340 GCGTGTCCAGATTGCTGAGA 60.390 55.000 0.00 0.00 45.17 3.27
415 420 7.329962 TGCTGAGATATGATTTGTTTTGCTTTG 59.670 33.333 0.00 0.00 0.00 2.77
417 422 9.199982 CTGAGATATGATTTGTTTTGCTTTGTT 57.800 29.630 0.00 0.00 0.00 2.83
420 425 9.328845 AGATATGATTTGTTTTGCTTTGTTGTT 57.671 25.926 0.00 0.00 0.00 2.83
424 429 8.278482 TGATTTGTTTTGCTTTGTTGTTTTTG 57.722 26.923 0.00 0.00 0.00 2.44
429 434 7.250569 TGTTTTGCTTTGTTGTTTTTGTTTCA 58.749 26.923 0.00 0.00 0.00 2.69
432 437 6.851222 TGCTTTGTTGTTTTTGTTTCAGAA 57.149 29.167 0.00 0.00 0.00 3.02
441 446 7.644986 TGTTTTTGTTTCAGAACGTTGAATT 57.355 28.000 5.00 0.00 38.65 2.17
457 462 8.673626 ACGTTGAATTATGATGAATTTGTGTC 57.326 30.769 0.00 0.00 0.00 3.67
468 473 8.675705 TGATGAATTTGTGTCGTATAATCCAT 57.324 30.769 0.00 0.00 0.00 3.41
469 474 8.558700 TGATGAATTTGTGTCGTATAATCCATG 58.441 33.333 0.00 0.00 0.00 3.66
470 475 7.857734 TGAATTTGTGTCGTATAATCCATGT 57.142 32.000 0.00 0.00 0.00 3.21
471 476 7.693020 TGAATTTGTGTCGTATAATCCATGTG 58.307 34.615 0.00 0.00 0.00 3.21
472 477 5.478233 TTTGTGTCGTATAATCCATGTGC 57.522 39.130 0.00 0.00 0.00 4.57
473 478 4.130286 TGTGTCGTATAATCCATGTGCA 57.870 40.909 0.00 0.00 0.00 4.57
474 479 4.702831 TGTGTCGTATAATCCATGTGCAT 58.297 39.130 0.00 0.00 0.00 3.96
475 480 4.511082 TGTGTCGTATAATCCATGTGCATG 59.489 41.667 5.26 5.26 38.51 4.06
476 481 4.749598 GTGTCGTATAATCCATGTGCATGA 59.250 41.667 13.21 1.15 41.20 3.07
477 482 4.749598 TGTCGTATAATCCATGTGCATGAC 59.250 41.667 13.21 2.32 41.20 3.06
478 483 4.991056 GTCGTATAATCCATGTGCATGACT 59.009 41.667 13.21 0.94 41.20 3.41
479 484 5.466728 GTCGTATAATCCATGTGCATGACTT 59.533 40.000 13.21 8.51 41.20 3.01
480 485 5.466393 TCGTATAATCCATGTGCATGACTTG 59.534 40.000 13.21 0.88 41.20 3.16
496 501 5.571784 TGACTTGCATGAATTTGAGGATC 57.428 39.130 6.60 0.00 0.00 3.36
497 502 4.095334 TGACTTGCATGAATTTGAGGATCG 59.905 41.667 6.60 0.00 38.61 3.69
498 503 4.012374 ACTTGCATGAATTTGAGGATCGT 58.988 39.130 6.60 0.00 38.61 3.73
499 504 5.185454 ACTTGCATGAATTTGAGGATCGTA 58.815 37.500 6.60 0.00 38.61 3.43
500 505 5.065218 ACTTGCATGAATTTGAGGATCGTAC 59.935 40.000 6.60 0.00 38.61 3.67
501 506 3.555547 TGCATGAATTTGAGGATCGTACG 59.444 43.478 9.53 9.53 38.61 3.67
502 507 3.802139 GCATGAATTTGAGGATCGTACGA 59.198 43.478 21.93 21.93 38.61 3.43
503 508 4.449068 GCATGAATTTGAGGATCGTACGAT 59.551 41.667 29.79 29.79 38.61 3.73
518 523 2.299993 ACGATCGATGTGCATGACTT 57.700 45.000 24.34 0.00 0.00 3.01
533 538 4.730949 ATGACTTGCATGAATTTGAGGG 57.269 40.909 6.60 0.00 35.42 4.30
535 540 4.661222 TGACTTGCATGAATTTGAGGGTA 58.339 39.130 6.60 0.00 0.00 3.69
541 546 4.771577 TGCATGAATTTGAGGGTACACATT 59.228 37.500 0.00 0.00 0.00 2.71
560 565 4.142752 ACATTTGAGATGTGTGATTGAGCG 60.143 41.667 0.00 0.00 0.00 5.03
563 568 2.029110 TGAGATGTGTGATTGAGCGACA 60.029 45.455 0.00 0.00 0.00 4.35
564 569 3.193263 GAGATGTGTGATTGAGCGACAT 58.807 45.455 0.00 0.00 0.00 3.06
565 570 2.934553 AGATGTGTGATTGAGCGACATG 59.065 45.455 0.00 0.00 0.00 3.21
566 571 1.441738 TGTGTGATTGAGCGACATGG 58.558 50.000 0.00 0.00 0.00 3.66
567 572 1.270785 TGTGTGATTGAGCGACATGGT 60.271 47.619 0.00 0.00 0.00 3.55
569 574 3.000041 GTGTGATTGAGCGACATGGTAA 59.000 45.455 0.00 0.00 0.00 2.85
578 583 0.248289 CGACATGGTAAACGAGGGGT 59.752 55.000 0.00 0.00 0.00 4.95
583 588 1.946984 TGGTAAACGAGGGGTCATCT 58.053 50.000 0.00 0.00 0.00 2.90
584 589 3.104519 TGGTAAACGAGGGGTCATCTA 57.895 47.619 0.00 0.00 0.00 1.98
587 592 3.196254 GGTAAACGAGGGGTCATCTAACA 59.804 47.826 0.00 0.00 0.00 2.41
588 593 4.141779 GGTAAACGAGGGGTCATCTAACAT 60.142 45.833 0.00 0.00 0.00 2.71
592 597 3.263425 ACGAGGGGTCATCTAACATTGTT 59.737 43.478 7.30 7.30 0.00 2.83
595 600 3.763897 AGGGGTCATCTAACATTGTTTGC 59.236 43.478 7.45 0.00 0.00 3.68
596 601 3.427503 GGGGTCATCTAACATTGTTTGCG 60.428 47.826 7.45 1.29 0.00 4.85
600 605 4.068599 TCATCTAACATTGTTTGCGGACA 58.931 39.130 7.45 0.00 0.00 4.02
603 608 0.736053 AACATTGTTTGCGGACACGT 59.264 45.000 0.00 0.00 43.45 4.49
604 609 1.584175 ACATTGTTTGCGGACACGTA 58.416 45.000 0.00 0.00 43.45 3.57
605 610 2.147958 ACATTGTTTGCGGACACGTAT 58.852 42.857 0.00 0.00 43.45 3.06
606 611 3.327626 ACATTGTTTGCGGACACGTATA 58.672 40.909 0.00 0.00 43.45 1.47
618 623 4.201891 CGGACACGTATAGATGTATAGGGC 60.202 50.000 12.58 3.82 33.16 5.19
619 624 4.097589 GGACACGTATAGATGTATAGGGCC 59.902 50.000 12.58 0.00 33.16 5.80
621 626 3.693085 CACGTATAGATGTATAGGGCCGT 59.307 47.826 12.58 2.24 33.16 5.68
626 631 6.916387 CGTATAGATGTATAGGGCCGTATTTG 59.084 42.308 22.31 0.00 0.00 2.32
651 656 0.825410 TCCGGCGGTAAATGCTCTTA 59.175 50.000 27.32 0.00 0.00 2.10
702 709 0.322816 TAGGGTGTCGGCGTAGTCTT 60.323 55.000 6.85 0.00 0.00 3.01
709 716 1.213013 CGGCGTAGTCTTGTGCTCT 59.787 57.895 0.00 0.00 0.00 4.09
711 718 1.071605 GGCGTAGTCTTGTGCTCTTG 58.928 55.000 0.00 0.00 0.00 3.02
925 943 4.872485 GTCTCTCGTCTCCGCGCG 62.872 72.222 25.67 25.67 0.00 6.86
939 957 3.257561 CGCGCATCTTCCACTCGG 61.258 66.667 8.75 0.00 0.00 4.63
942 960 1.696832 GCGCATCTTCCACTCGGTTC 61.697 60.000 0.30 0.00 0.00 3.62
982 1000 1.941734 CTCTGCGCACGCTAGCTAC 60.942 63.158 16.77 0.60 42.51 3.58
992 1010 1.721819 GCTAGCTACGTACGAGCGC 60.722 63.158 24.41 19.36 44.98 5.92
994 1012 0.383246 CTAGCTACGTACGAGCGCTG 60.383 60.000 27.52 10.31 44.98 5.18
1139 1159 4.409588 CGTCGTCGCTGCAAACCG 62.410 66.667 0.00 0.00 0.00 4.44
1142 1162 2.096406 CGTCGCTGCAAACCGATG 59.904 61.111 0.00 7.70 35.76 3.84
1143 1163 2.202349 GTCGCTGCAAACCGATGC 60.202 61.111 0.00 1.50 46.58 3.91
1166 1237 2.530177 CTTCGCGCTGTCTGAATCTTA 58.470 47.619 5.56 0.00 0.00 2.10
1193 1267 3.303791 GCGTAATAATGCAGGCTGGTTAC 60.304 47.826 17.64 0.00 37.58 2.50
1253 1327 1.682323 GAGGTAACCAGATCGTCCCTC 59.318 57.143 0.00 0.00 37.17 4.30
1254 1328 1.288335 AGGTAACCAGATCGTCCCTCT 59.712 52.381 0.00 0.00 37.17 3.69
1313 1394 1.816835 CACTAGACAACCTCTACGCCA 59.183 52.381 0.00 0.00 0.00 5.69
1376 1457 0.178068 TAACCAGCCGGCAAGATCTC 59.822 55.000 31.54 0.00 34.57 2.75
1406 1487 2.134789 CCAAGCTATGGTGAGCCTTT 57.865 50.000 6.74 0.00 44.85 3.11
1418 1499 1.405105 TGAGCCTTTGCAGTGTTTGTC 59.595 47.619 0.00 0.00 41.13 3.18
1426 1507 2.229792 TGCAGTGTTTGTCTTCCCATC 58.770 47.619 0.00 0.00 0.00 3.51
1429 1510 3.077359 CAGTGTTTGTCTTCCCATCCTC 58.923 50.000 0.00 0.00 0.00 3.71
1431 1512 1.354368 TGTTTGTCTTCCCATCCTCCC 59.646 52.381 0.00 0.00 0.00 4.30
1432 1513 1.354368 GTTTGTCTTCCCATCCTCCCA 59.646 52.381 0.00 0.00 0.00 4.37
1433 1514 1.985622 TTGTCTTCCCATCCTCCCAT 58.014 50.000 0.00 0.00 0.00 4.00
1447 1528 2.621998 CCTCCCATCATCTGAACATTGC 59.378 50.000 0.00 0.00 0.00 3.56
1451 1532 2.963101 CCATCATCTGAACATTGCCCAT 59.037 45.455 0.00 0.00 0.00 4.00
1461 1542 2.440409 ACATTGCCCATTCAGACACTC 58.560 47.619 0.00 0.00 0.00 3.51
1465 1546 1.355381 TGCCCATTCAGACACTCCAAT 59.645 47.619 0.00 0.00 0.00 3.16
1469 1550 2.159476 CCATTCAGACACTCCAATTGCG 60.159 50.000 0.00 0.00 0.00 4.85
1472 1553 2.844946 TCAGACACTCCAATTGCGAAA 58.155 42.857 0.00 0.00 0.00 3.46
1473 1554 3.210227 TCAGACACTCCAATTGCGAAAA 58.790 40.909 0.00 0.00 0.00 2.29
1475 1556 3.730715 CAGACACTCCAATTGCGAAAAAC 59.269 43.478 0.00 0.00 0.00 2.43
1485 1568 6.038825 TCCAATTGCGAAAAACTGAGAAGTTA 59.961 34.615 0.00 0.00 0.00 2.24
1491 1574 5.131204 CGAAAAACTGAGAAGTTAACGAGC 58.869 41.667 0.00 0.00 0.00 5.03
1492 1575 4.710528 AAAACTGAGAAGTTAACGAGCG 57.289 40.909 0.00 0.00 0.00 5.03
1495 1578 3.973657 ACTGAGAAGTTAACGAGCGAAA 58.026 40.909 0.00 0.00 0.00 3.46
1496 1579 4.365723 ACTGAGAAGTTAACGAGCGAAAA 58.634 39.130 0.00 0.00 0.00 2.29
1497 1580 4.989168 ACTGAGAAGTTAACGAGCGAAAAT 59.011 37.500 0.00 0.00 0.00 1.82
1499 1582 5.227908 TGAGAAGTTAACGAGCGAAAATCT 58.772 37.500 0.00 0.00 0.00 2.40
1500 1583 5.694910 TGAGAAGTTAACGAGCGAAAATCTT 59.305 36.000 0.00 0.00 0.00 2.40
1501 1584 5.916969 AGAAGTTAACGAGCGAAAATCTTG 58.083 37.500 0.00 0.00 0.00 3.02
1502 1585 5.694910 AGAAGTTAACGAGCGAAAATCTTGA 59.305 36.000 0.00 0.00 0.00 3.02
1504 1587 6.095947 AGTTAACGAGCGAAAATCTTGATC 57.904 37.500 0.00 0.00 0.00 2.92
1505 1588 5.869888 AGTTAACGAGCGAAAATCTTGATCT 59.130 36.000 0.00 0.00 0.00 2.75
1506 1589 4.590400 AACGAGCGAAAATCTTGATCTG 57.410 40.909 0.00 0.00 0.00 2.90
1507 1590 3.849911 ACGAGCGAAAATCTTGATCTGA 58.150 40.909 0.00 0.00 0.00 3.27
1508 1591 4.245660 ACGAGCGAAAATCTTGATCTGAA 58.754 39.130 0.00 0.00 0.00 3.02
1510 1593 5.196102 CGAGCGAAAATCTTGATCTGAATG 58.804 41.667 0.00 0.00 0.00 2.67
1511 1594 5.220548 CGAGCGAAAATCTTGATCTGAATGT 60.221 40.000 0.00 0.00 0.00 2.71
1514 1597 7.025963 AGCGAAAATCTTGATCTGAATGTTTC 58.974 34.615 0.00 4.52 0.00 2.78
1515 1598 6.021939 GCGAAAATCTTGATCTGAATGTTTCG 60.022 38.462 22.46 22.46 44.49 3.46
1596 1679 1.154073 GCAGACCGACTACGTGGAC 60.154 63.158 5.70 0.00 37.88 4.02
1663 1746 2.236395 CAGTTTCTTCCACCCGGTATCT 59.764 50.000 0.00 0.00 0.00 1.98
1664 1747 2.910977 AGTTTCTTCCACCCGGTATCTT 59.089 45.455 0.00 0.00 0.00 2.40
1665 1748 3.007635 GTTTCTTCCACCCGGTATCTTG 58.992 50.000 0.00 0.00 0.00 3.02
1666 1749 2.241281 TCTTCCACCCGGTATCTTGA 57.759 50.000 0.00 0.00 0.00 3.02
1667 1750 2.759355 TCTTCCACCCGGTATCTTGAT 58.241 47.619 0.00 0.00 0.00 2.57
1696 1779 3.196469 TCCTGAGATGCATTCTTCGTTCT 59.804 43.478 0.00 0.00 33.74 3.01
1697 1780 3.555139 CCTGAGATGCATTCTTCGTTCTC 59.445 47.826 0.00 1.30 33.74 2.87
1756 1839 1.738099 CTTCAGCCCGGAGAACGTG 60.738 63.158 0.73 0.00 42.24 4.49
1864 1947 0.392193 CGTGCAAGAAGCTGGAGGAT 60.392 55.000 0.00 0.00 45.94 3.24
1983 2066 3.627577 GGGATACACTTCTCCGTACGTTA 59.372 47.826 15.21 0.63 39.74 3.18
2028 2111 3.374058 CCATTGTTACTGTAGCTTTCCCG 59.626 47.826 0.00 0.00 0.00 5.14
2100 2183 1.068541 GGGGACGTTCAAAGCATTCAC 60.069 52.381 0.00 0.00 0.00 3.18
2232 2315 0.041238 ACCCACGAGGAGAGGATCAA 59.959 55.000 0.00 0.00 39.89 2.57
2293 2376 1.807573 GTTCGCCGGCTTCTCTGAG 60.808 63.158 26.68 6.06 0.00 3.35
2305 2388 3.990469 GCTTCTCTGAGATCGAACAAACA 59.010 43.478 8.42 0.00 0.00 2.83
2402 2487 8.865001 GTGAAATATAGTCTGAACAGAACAGTC 58.135 37.037 6.08 0.00 39.48 3.51
2403 2488 8.585018 TGAAATATAGTCTGAACAGAACAGTCA 58.415 33.333 6.08 2.50 39.48 3.41
2461 2553 4.124238 GGCAACAGAATAATGCGGTAGTA 58.876 43.478 0.00 0.00 40.94 1.82
2478 2570 5.625721 CGGTAGTAATAATCAGCAGTCGAAG 59.374 44.000 0.00 0.00 0.00 3.79
2499 2591 3.552839 CTCGAGCTTCGCTGCTGC 61.553 66.667 5.34 5.34 44.17 5.25
2509 2601 0.103026 TCGCTGCTGCTGGTATGTAG 59.897 55.000 14.03 0.00 36.97 2.74
2510 2602 0.103026 CGCTGCTGCTGGTATGTAGA 59.897 55.000 14.03 0.00 36.97 2.59
2511 2603 1.863267 GCTGCTGCTGGTATGTAGAG 58.137 55.000 8.53 0.00 36.03 2.43
2512 2604 1.863267 CTGCTGCTGGTATGTAGAGC 58.137 55.000 0.00 0.00 0.00 4.09
2513 2605 1.137675 CTGCTGCTGGTATGTAGAGCA 59.862 52.381 0.00 0.00 40.40 4.26
2535 2627 5.407387 GCAATTTGCATGAGTGATTTGAGTT 59.593 36.000 16.35 0.00 44.26 3.01
2543 2635 6.677431 GCATGAGTGATTTGAGTTCAGAATCC 60.677 42.308 0.00 6.27 0.00 3.01
2564 2656 5.812286 TCCTCCCTGGAAGTTGTAAAATAC 58.188 41.667 0.00 0.00 42.94 1.89
2592 2686 3.005155 GCTTTGTCCTGCTCTGTCATTTT 59.995 43.478 0.00 0.00 0.00 1.82
2602 2696 6.073980 CCTGCTCTGTCATTTTTGTTTTGATG 60.074 38.462 0.00 0.00 0.00 3.07
2673 3741 0.381801 GCAGTGTCACCACCAACAAG 59.618 55.000 0.00 0.00 42.88 3.16
2680 3748 0.468029 CACCACCAACAAGGCCTTCT 60.468 55.000 17.29 0.00 43.14 2.85
2701 3769 5.437060 TCTAATTTACTGCAATGTCCCCTC 58.563 41.667 0.00 0.00 0.00 4.30
2712 3781 0.114364 TGTCCCCTCACTGTGCTAGA 59.886 55.000 2.12 0.00 0.00 2.43
2741 3825 4.586235 AAGGCCACCGCAGCACTT 62.586 61.111 5.01 0.00 36.38 3.16
2751 3835 3.494378 CAGCACTTGCCGAGATGG 58.506 61.111 0.00 0.00 43.38 3.51
2752 3836 1.376424 CAGCACTTGCCGAGATGGT 60.376 57.895 0.00 0.00 43.38 3.55
2753 3837 1.376424 AGCACTTGCCGAGATGGTG 60.376 57.895 0.00 0.00 43.38 4.17
2754 3838 3.044059 GCACTTGCCGAGATGGTGC 62.044 63.158 0.00 0.00 44.53 5.01
2755 3839 1.376424 CACTTGCCGAGATGGTGCT 60.376 57.895 0.00 0.00 41.21 4.40
2788 3878 4.514585 GGCACCACCACCACCACA 62.515 66.667 0.00 0.00 38.86 4.17
2883 3977 3.812019 CGGGGAGTGACTCGACGG 61.812 72.222 16.39 8.74 30.66 4.79
2913 4007 4.210304 GCGACGTGATGCCGAAGC 62.210 66.667 0.00 0.00 40.48 3.86
2939 4033 1.521010 CATGGTCCAGCTCTGCTCG 60.521 63.158 0.00 0.00 36.40 5.03
2956 4050 0.318955 TCGACGAACCCGAAAAGGTC 60.319 55.000 0.00 0.00 40.05 3.85
2972 4066 3.238108 AGGTCGAAGTAGCACATGAAG 57.762 47.619 0.00 0.00 0.00 3.02
2982 4076 0.449388 GCACATGAAGCTGCAGGTAC 59.551 55.000 20.51 2.08 30.79 3.34
2990 4084 0.036010 AGCTGCAGGTACACCACATC 60.036 55.000 18.63 0.00 38.89 3.06
3004 4098 4.102524 ACACCACATCCAGTTCTAGTTTCA 59.897 41.667 0.00 0.00 0.00 2.69
3008 4102 5.511373 CCACATCCAGTTCTAGTTTCAGTCA 60.511 44.000 0.00 0.00 0.00 3.41
3023 4117 7.497595 AGTTTCAGTCATACAGTTACAGACAA 58.502 34.615 0.00 0.00 0.00 3.18
3024 4118 7.438459 AGTTTCAGTCATACAGTTACAGACAAC 59.562 37.037 0.00 0.00 0.00 3.32
3032 4126 8.731605 TCATACAGTTACAGACAACAAAACAAA 58.268 29.630 0.00 0.00 0.00 2.83
3040 4134 6.099341 ACAGACAACAAAACAAAAGATGACC 58.901 36.000 0.00 0.00 0.00 4.02
3042 4136 6.254157 CAGACAACAAAACAAAAGATGACCTG 59.746 38.462 0.00 0.00 0.00 4.00
3043 4137 5.418676 ACAACAAAACAAAAGATGACCTGG 58.581 37.500 0.00 0.00 0.00 4.45
3045 4139 4.285863 ACAAAACAAAAGATGACCTGGGA 58.714 39.130 0.00 0.00 0.00 4.37
3051 4145 4.202609 ACAAAAGATGACCTGGGACTTCAT 60.203 41.667 0.00 0.00 32.53 2.57
3052 4146 4.664688 AAAGATGACCTGGGACTTCATT 57.335 40.909 0.00 0.00 29.93 2.57
3054 4148 2.019984 GATGACCTGGGACTTCATTGC 58.980 52.381 0.00 0.00 29.93 3.56
3055 4149 1.067295 TGACCTGGGACTTCATTGCT 58.933 50.000 0.00 0.00 0.00 3.91
3056 4150 1.003580 TGACCTGGGACTTCATTGCTC 59.996 52.381 0.00 0.00 0.00 4.26
3071 4185 4.216257 TCATTGCTCTTTTGCTTACAGGAC 59.784 41.667 0.00 0.00 0.00 3.85
3077 4191 3.007506 TCTTTTGCTTACAGGACCGATGA 59.992 43.478 0.00 0.00 0.00 2.92
3078 4192 2.380084 TTGCTTACAGGACCGATGAC 57.620 50.000 0.00 0.00 0.00 3.06
3080 4194 1.067142 TGCTTACAGGACCGATGACAC 60.067 52.381 0.00 0.00 0.00 3.67
3103 4217 2.098298 CGGCGAAGAACATTGCGG 59.902 61.111 0.00 0.00 0.00 5.69
3128 4242 0.248289 CCGGTGTAGGATTTGTCGGT 59.752 55.000 0.00 0.00 0.00 4.69
3149 4263 2.125673 GTAAGGGAGCTTCGCGCA 60.126 61.111 8.75 0.00 42.61 6.09
3192 4306 3.118038 TGTCAGCCACACCTAAAAGAAGT 60.118 43.478 0.00 0.00 0.00 3.01
3205 4319 9.601217 CACCTAAAAGAAGTAGCATACATAGTT 57.399 33.333 0.00 0.00 46.26 2.24
3227 4341 4.590850 ATGCTGTTTTCTGAAACCTTCC 57.409 40.909 1.58 0.00 43.57 3.46
3230 4344 3.384789 GCTGTTTTCTGAAACCTTCCCTT 59.615 43.478 1.58 0.00 43.57 3.95
3234 4348 5.105513 TGTTTTCTGAAACCTTCCCTTGAAC 60.106 40.000 1.58 0.00 43.57 3.18
3242 4356 6.099557 TGAAACCTTCCCTTGAACAATCAAAT 59.900 34.615 0.00 0.00 44.64 2.32
3243 4357 6.499106 AACCTTCCCTTGAACAATCAAATT 57.501 33.333 0.00 0.00 44.64 1.82
3245 4359 7.610580 ACCTTCCCTTGAACAATCAAATTAA 57.389 32.000 0.00 0.00 44.64 1.40
3246 4360 7.670364 ACCTTCCCTTGAACAATCAAATTAAG 58.330 34.615 0.00 0.00 44.64 1.85
3247 4361 7.099120 CCTTCCCTTGAACAATCAAATTAAGG 58.901 38.462 0.00 0.00 44.64 2.69
3248 4362 7.039082 CCTTCCCTTGAACAATCAAATTAAGGA 60.039 37.037 14.29 5.42 44.64 3.36
3250 4364 7.237982 TCCCTTGAACAATCAAATTAAGGAGA 58.762 34.615 0.00 0.00 44.64 3.71
3252 4366 8.534496 CCCTTGAACAATCAAATTAAGGAGAAT 58.466 33.333 0.00 0.00 44.64 2.40
3257 4371 9.508567 GAACAATCAAATTAAGGAGAATGTAGC 57.491 33.333 0.00 0.00 0.00 3.58
3258 4372 8.579850 ACAATCAAATTAAGGAGAATGTAGCA 57.420 30.769 0.00 0.00 0.00 3.49
3271 4385 4.522789 AGAATGTAGCACCGGACAAAAATT 59.477 37.500 9.46 0.65 0.00 1.82
3275 4389 5.521544 TGTAGCACCGGACAAAAATTTAAC 58.478 37.500 9.46 0.00 0.00 2.01
3292 4406 9.822185 AAAATTTAACTGCATGAGAAAGAACTT 57.178 25.926 0.00 0.00 0.00 2.66
3293 4407 8.807667 AATTTAACTGCATGAGAAAGAACTTG 57.192 30.769 0.00 0.00 0.00 3.16
3299 4413 4.072131 GCATGAGAAAGAACTTGGTACCA 58.928 43.478 11.60 11.60 0.00 3.25
3302 4416 5.560722 TGAGAAAGAACTTGGTACCATCA 57.439 39.130 17.17 10.18 0.00 3.07
3308 4422 1.813753 CTTGGTACCATCACCCGCG 60.814 63.158 17.17 0.00 37.84 6.46
3311 4425 3.192922 GTACCATCACCCGCGCAC 61.193 66.667 8.75 0.00 0.00 5.34
3314 4428 2.733319 TACCATCACCCGCGCACAAA 62.733 55.000 8.75 0.00 0.00 2.83
3332 4446 1.912001 AATTGCAAATCACGGCGATG 58.088 45.000 16.62 8.65 34.43 3.84
3337 4451 1.895051 CAAATCACGGCGATGGAAAC 58.105 50.000 16.62 0.00 33.40 2.78
3344 4458 1.078708 GGCGATGGAAACGGGAGAA 60.079 57.895 0.00 0.00 30.42 2.87
3349 4463 1.555533 GATGGAAACGGGAGAAGTCCT 59.444 52.381 0.00 0.00 43.36 3.85
3363 4477 6.976636 GAGAAGTCCTCCAAAAGATTACAG 57.023 41.667 0.00 0.00 35.87 2.74
3364 4478 5.249420 AGAAGTCCTCCAAAAGATTACAGC 58.751 41.667 0.00 0.00 0.00 4.40
3365 4479 4.640771 AGTCCTCCAAAAGATTACAGCA 57.359 40.909 0.00 0.00 0.00 4.41
3366 4480 4.583871 AGTCCTCCAAAAGATTACAGCAG 58.416 43.478 0.00 0.00 0.00 4.24
3367 4481 3.127721 GTCCTCCAAAAGATTACAGCAGC 59.872 47.826 0.00 0.00 0.00 5.25
3368 4482 2.096496 CCTCCAAAAGATTACAGCAGCG 59.904 50.000 0.00 0.00 0.00 5.18
3369 4483 3.002791 CTCCAAAAGATTACAGCAGCGA 58.997 45.455 0.00 0.00 0.00 4.93
3370 4484 3.407698 TCCAAAAGATTACAGCAGCGAA 58.592 40.909 0.00 0.00 0.00 4.70
3371 4485 3.818210 TCCAAAAGATTACAGCAGCGAAA 59.182 39.130 0.00 0.00 0.00 3.46
3372 4486 4.458989 TCCAAAAGATTACAGCAGCGAAAT 59.541 37.500 0.00 0.00 0.00 2.17
3373 4487 4.795278 CCAAAAGATTACAGCAGCGAAATC 59.205 41.667 8.55 8.55 0.00 2.17
3374 4488 5.392380 CCAAAAGATTACAGCAGCGAAATCT 60.392 40.000 11.86 11.86 39.70 2.40
3375 4489 6.183360 CCAAAAGATTACAGCAGCGAAATCTA 60.183 38.462 15.89 0.00 37.63 1.98
3376 4490 6.985188 AAAGATTACAGCAGCGAAATCTAA 57.015 33.333 15.89 0.00 37.63 2.10
3377 4491 6.985188 AAGATTACAGCAGCGAAATCTAAA 57.015 33.333 15.89 0.00 37.63 1.85
3378 4492 6.595772 AGATTACAGCAGCGAAATCTAAAG 57.404 37.500 14.65 0.00 37.02 1.85
3379 4493 4.600012 TTACAGCAGCGAAATCTAAAGC 57.400 40.909 0.00 0.00 0.00 3.51
3380 4494 1.740025 ACAGCAGCGAAATCTAAAGCC 59.260 47.619 0.00 0.00 0.00 4.35
3381 4495 1.064654 CAGCAGCGAAATCTAAAGCCC 59.935 52.381 0.00 0.00 0.00 5.19
3382 4496 0.028110 GCAGCGAAATCTAAAGCCCG 59.972 55.000 0.00 0.00 0.00 6.13
3383 4497 0.657840 CAGCGAAATCTAAAGCCCGG 59.342 55.000 0.00 0.00 0.00 5.73
3384 4498 1.095807 AGCGAAATCTAAAGCCCGGC 61.096 55.000 0.00 0.00 0.00 6.13
3385 4499 1.641677 CGAAATCTAAAGCCCGGCG 59.358 57.895 3.05 0.00 0.00 6.46
3386 4500 1.087771 CGAAATCTAAAGCCCGGCGT 61.088 55.000 6.01 0.00 0.00 5.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.248640 TCCCTCTCAATTTGTAGCTTCTTG 58.751 41.667 0.00 0.00 0.00 3.02
1 2 5.249393 TCTCCCTCTCAATTTGTAGCTTCTT 59.751 40.000 0.00 0.00 0.00 2.52
2 3 4.780021 TCTCCCTCTCAATTTGTAGCTTCT 59.220 41.667 0.00 0.00 0.00 2.85
3 4 5.091261 TCTCCCTCTCAATTTGTAGCTTC 57.909 43.478 0.00 0.00 0.00 3.86
4 5 5.249393 TCTTCTCCCTCTCAATTTGTAGCTT 59.751 40.000 0.00 0.00 0.00 3.74
5 6 4.780021 TCTTCTCCCTCTCAATTTGTAGCT 59.220 41.667 0.00 0.00 0.00 3.32
6 7 5.091261 TCTTCTCCCTCTCAATTTGTAGC 57.909 43.478 0.00 0.00 0.00 3.58
7 8 7.390027 TCTTTCTTCTCCCTCTCAATTTGTAG 58.610 38.462 0.00 0.00 0.00 2.74
8 9 7.316393 TCTTTCTTCTCCCTCTCAATTTGTA 57.684 36.000 0.00 0.00 0.00 2.41
9 10 6.192970 TCTTTCTTCTCCCTCTCAATTTGT 57.807 37.500 0.00 0.00 0.00 2.83
10 11 6.349197 GCTTCTTTCTTCTCCCTCTCAATTTG 60.349 42.308 0.00 0.00 0.00 2.32
11 12 5.709631 GCTTCTTTCTTCTCCCTCTCAATTT 59.290 40.000 0.00 0.00 0.00 1.82
12 13 5.252547 GCTTCTTTCTTCTCCCTCTCAATT 58.747 41.667 0.00 0.00 0.00 2.32
13 14 4.622695 CGCTTCTTTCTTCTCCCTCTCAAT 60.623 45.833 0.00 0.00 0.00 2.57
14 15 3.306364 CGCTTCTTTCTTCTCCCTCTCAA 60.306 47.826 0.00 0.00 0.00 3.02
15 16 2.232452 CGCTTCTTTCTTCTCCCTCTCA 59.768 50.000 0.00 0.00 0.00 3.27
16 17 2.494073 TCGCTTCTTTCTTCTCCCTCTC 59.506 50.000 0.00 0.00 0.00 3.20
17 18 2.232696 GTCGCTTCTTTCTTCTCCCTCT 59.767 50.000 0.00 0.00 0.00 3.69
18 19 2.612604 GTCGCTTCTTTCTTCTCCCTC 58.387 52.381 0.00 0.00 0.00 4.30
19 20 1.067495 CGTCGCTTCTTTCTTCTCCCT 60.067 52.381 0.00 0.00 0.00 4.20
20 21 1.067776 TCGTCGCTTCTTTCTTCTCCC 60.068 52.381 0.00 0.00 0.00 4.30
21 22 2.349297 TCGTCGCTTCTTTCTTCTCC 57.651 50.000 0.00 0.00 0.00 3.71
52 53 3.885297 CCAAATGTATTGGCCTTCTCGAT 59.115 43.478 3.32 0.00 32.18 3.59
55 56 4.526970 TCTCCAAATGTATTGGCCTTCTC 58.473 43.478 3.32 0.00 39.38 2.87
61 62 3.696051 TCAAGCTCTCCAAATGTATTGGC 59.304 43.478 2.32 0.00 39.38 4.52
79 80 5.163834 GCAATCTCTTCTTCTCAAGCTCAAG 60.164 44.000 0.00 0.00 0.00 3.02
94 95 4.153117 GTCTCGTGTGATTTGCAATCTCTT 59.847 41.667 0.00 0.00 0.00 2.85
97 98 2.413112 CGTCTCGTGTGATTTGCAATCT 59.587 45.455 0.00 0.00 0.00 2.40
102 103 1.225475 CGCGTCTCGTGTGATTTGC 60.225 57.895 0.00 0.00 32.40 3.68
106 107 2.485582 CTCCGCGTCTCGTGTGAT 59.514 61.111 4.92 0.00 35.46 3.06
107 108 3.733960 CCTCCGCGTCTCGTGTGA 61.734 66.667 4.92 0.00 35.46 3.58
108 109 3.052620 ATCCTCCGCGTCTCGTGTG 62.053 63.158 4.92 0.00 35.46 3.82
109 110 2.750637 ATCCTCCGCGTCTCGTGT 60.751 61.111 4.92 0.00 35.46 4.49
110 111 2.278206 CATCCTCCGCGTCTCGTG 60.278 66.667 4.92 0.00 37.10 4.35
111 112 4.194720 GCATCCTCCGCGTCTCGT 62.195 66.667 4.92 0.00 36.19 4.18
112 113 4.933064 GGCATCCTCCGCGTCTCG 62.933 72.222 4.92 0.00 38.08 4.04
113 114 2.650813 ATTGGCATCCTCCGCGTCTC 62.651 60.000 4.92 0.00 0.00 3.36
138 141 0.250234 CAAGAGGCCTTCGTCCATCA 59.750 55.000 6.77 0.00 0.00 3.07
141 144 1.535444 TCCAAGAGGCCTTCGTCCA 60.535 57.895 6.77 0.00 33.74 4.02
142 145 1.079057 GTCCAAGAGGCCTTCGTCC 60.079 63.158 6.77 0.00 33.74 4.79
149 152 1.817099 CATGCTCGTCCAAGAGGCC 60.817 63.158 0.00 0.00 38.63 5.19
158 161 2.523015 CCAATTCTTTGCATGCTCGTC 58.477 47.619 20.33 0.00 0.00 4.20
178 181 2.496899 TCTTCTTCATCCCCACAAGC 57.503 50.000 0.00 0.00 0.00 4.01
185 188 2.675348 CGTTGAGCTTCTTCTTCATCCC 59.325 50.000 0.00 0.00 0.00 3.85
190 193 5.062809 CCTTATGTCGTTGAGCTTCTTCTTC 59.937 44.000 0.00 0.00 0.00 2.87
200 203 4.496010 CCTCGTACTCCTTATGTCGTTGAG 60.496 50.000 0.00 0.00 0.00 3.02
212 216 2.045242 TCGCTGCCTCGTACTCCT 60.045 61.111 0.00 0.00 0.00 3.69
213 217 2.409651 CTCGCTGCCTCGTACTCC 59.590 66.667 0.00 0.00 0.00 3.85
244 248 1.642952 CTTGCCTTCTCTTCCGCTGC 61.643 60.000 0.00 0.00 0.00 5.25
249 253 1.387539 GCATCCTTGCCTTCTCTTCC 58.612 55.000 0.00 0.00 43.38 3.46
279 283 1.434696 CATGACCATTCTTGCCGCC 59.565 57.895 0.00 0.00 0.00 6.13
280 284 1.031571 TCCATGACCATTCTTGCCGC 61.032 55.000 0.00 0.00 0.00 6.53
282 286 0.743097 GCTCCATGACCATTCTTGCC 59.257 55.000 0.00 0.00 0.00 4.52
283 287 1.404391 CTGCTCCATGACCATTCTTGC 59.596 52.381 0.00 0.00 0.00 4.01
286 290 0.106819 GCCTGCTCCATGACCATTCT 60.107 55.000 0.00 0.00 0.00 2.40
288 292 1.452651 CGCCTGCTCCATGACCATT 60.453 57.895 0.00 0.00 0.00 3.16
293 297 2.387476 CTATGCCGCCTGCTCCATGA 62.387 60.000 0.00 0.00 42.00 3.07
295 299 2.429058 CTATGCCGCCTGCTCCAT 59.571 61.111 0.00 0.00 42.00 3.41
296 300 4.552365 GCTATGCCGCCTGCTCCA 62.552 66.667 0.00 0.00 42.00 3.86
297 301 4.247380 AGCTATGCCGCCTGCTCC 62.247 66.667 0.00 0.00 42.00 4.70
299 303 4.559063 CCAGCTATGCCGCCTGCT 62.559 66.667 0.00 0.00 42.00 4.24
304 308 4.899239 AGACGCCAGCTATGCCGC 62.899 66.667 2.11 0.00 0.00 6.53
305 309 2.963854 CAGACGCCAGCTATGCCG 60.964 66.667 2.11 0.00 0.00 5.69
306 310 2.590007 CCAGACGCCAGCTATGCC 60.590 66.667 2.11 0.00 0.00 4.40
307 311 2.176273 CACCAGACGCCAGCTATGC 61.176 63.158 0.00 0.00 0.00 3.14
308 312 0.807667 GTCACCAGACGCCAGCTATG 60.808 60.000 0.00 0.00 34.60 2.23
309 313 1.517832 GTCACCAGACGCCAGCTAT 59.482 57.895 0.00 0.00 34.60 2.97
310 314 2.970639 GTCACCAGACGCCAGCTA 59.029 61.111 0.00 0.00 34.60 3.32
318 322 1.153549 GCCGGATCAGTCACCAGAC 60.154 63.158 5.05 0.00 45.31 3.51
319 323 2.359169 GGCCGGATCAGTCACCAGA 61.359 63.158 5.05 0.00 0.00 3.86
320 324 2.187946 GGCCGGATCAGTCACCAG 59.812 66.667 5.05 0.00 0.00 4.00
321 325 2.606213 TGGCCGGATCAGTCACCA 60.606 61.111 5.05 0.00 0.00 4.17
322 326 2.187946 CTGGCCGGATCAGTCACC 59.812 66.667 5.28 0.00 0.00 4.02
323 327 1.448540 CACTGGCCGGATCAGTCAC 60.449 63.158 21.41 0.00 42.87 3.67
324 328 1.607801 CTCACTGGCCGGATCAGTCA 61.608 60.000 21.41 13.24 42.87 3.41
325 329 1.142748 CTCACTGGCCGGATCAGTC 59.857 63.158 21.41 0.00 42.87 3.51
326 330 1.610673 ACTCACTGGCCGGATCAGT 60.611 57.895 21.41 20.61 45.29 3.41
327 331 1.153489 CACTCACTGGCCGGATCAG 60.153 63.158 21.41 19.49 38.16 2.90
334 338 2.028112 TGTAACAGATCACTCACTGGCC 60.028 50.000 0.00 0.00 38.30 5.36
349 353 7.976826 ACATAAAACAAAGTTCGAGTGTAACA 58.023 30.769 0.00 0.00 41.43 2.41
352 356 8.277713 GCTAACATAAAACAAAGTTCGAGTGTA 58.722 33.333 0.00 0.00 0.00 2.90
355 359 6.018507 ACGCTAACATAAAACAAAGTTCGAGT 60.019 34.615 0.00 0.00 0.00 4.18
360 364 6.183360 TGGACACGCTAACATAAAACAAAGTT 60.183 34.615 0.00 0.00 0.00 2.66
370 375 3.118775 AGCAATCTGGACACGCTAACATA 60.119 43.478 0.00 0.00 0.00 2.29
373 378 1.394917 CAGCAATCTGGACACGCTAAC 59.605 52.381 0.00 0.00 36.68 2.34
376 381 0.390866 CTCAGCAATCTGGACACGCT 60.391 55.000 0.00 0.00 40.69 5.07
379 384 4.953667 TCATATCTCAGCAATCTGGACAC 58.046 43.478 0.00 0.00 40.69 3.67
386 391 7.705325 AGCAAAACAAATCATATCTCAGCAATC 59.295 33.333 0.00 0.00 0.00 2.67
387 392 7.553334 AGCAAAACAAATCATATCTCAGCAAT 58.447 30.769 0.00 0.00 0.00 3.56
388 393 6.927416 AGCAAAACAAATCATATCTCAGCAA 58.073 32.000 0.00 0.00 0.00 3.91
391 396 8.752766 ACAAAGCAAAACAAATCATATCTCAG 57.247 30.769 0.00 0.00 0.00 3.35
415 420 6.441099 TCAACGTTCTGAAACAAAAACAAC 57.559 33.333 0.00 0.00 34.93 3.32
417 422 7.644986 AATTCAACGTTCTGAAACAAAAACA 57.355 28.000 6.76 0.00 38.75 2.83
420 425 9.743057 ATCATAATTCAACGTTCTGAAACAAAA 57.257 25.926 6.76 0.00 38.75 2.44
423 428 8.093659 TCATCATAATTCAACGTTCTGAAACA 57.906 30.769 6.76 0.00 38.75 2.83
424 429 8.948853 TTCATCATAATTCAACGTTCTGAAAC 57.051 30.769 6.76 0.00 38.75 2.78
429 434 9.345517 CACAAATTCATCATAATTCAACGTTCT 57.654 29.630 0.00 0.00 0.00 3.01
432 437 7.481483 CGACACAAATTCATCATAATTCAACGT 59.519 33.333 0.00 0.00 0.00 3.99
441 446 9.771534 TGGATTATACGACACAAATTCATCATA 57.228 29.630 0.00 0.00 0.00 2.15
457 462 5.682869 CAAGTCATGCACATGGATTATACG 58.317 41.667 10.58 0.00 39.24 3.06
473 478 5.220989 CGATCCTCAAATTCATGCAAGTCAT 60.221 40.000 0.00 0.00 35.31 3.06
474 479 4.095334 CGATCCTCAAATTCATGCAAGTCA 59.905 41.667 0.00 0.00 0.00 3.41
475 480 4.095483 ACGATCCTCAAATTCATGCAAGTC 59.905 41.667 0.00 0.00 0.00 3.01
476 481 4.012374 ACGATCCTCAAATTCATGCAAGT 58.988 39.130 0.00 0.00 0.00 3.16
477 482 4.627611 ACGATCCTCAAATTCATGCAAG 57.372 40.909 0.00 0.00 0.00 4.01
478 483 4.033932 CGTACGATCCTCAAATTCATGCAA 59.966 41.667 10.44 0.00 0.00 4.08
479 484 3.555547 CGTACGATCCTCAAATTCATGCA 59.444 43.478 10.44 0.00 0.00 3.96
480 485 3.802139 TCGTACGATCCTCAAATTCATGC 59.198 43.478 15.28 0.00 0.00 4.06
481 486 5.164148 CGATCGTACGATCCTCAAATTCATG 60.164 44.000 38.79 23.04 45.95 3.07
482 487 4.917998 CGATCGTACGATCCTCAAATTCAT 59.082 41.667 38.79 14.60 45.95 2.57
483 488 4.035909 TCGATCGTACGATCCTCAAATTCA 59.964 41.667 38.79 17.26 45.95 2.57
484 489 4.534168 TCGATCGTACGATCCTCAAATTC 58.466 43.478 38.79 21.52 45.95 2.17
485 490 4.563337 TCGATCGTACGATCCTCAAATT 57.437 40.909 38.79 15.98 45.95 1.82
495 500 1.332375 TCATGCACATCGATCGTACGA 59.668 47.619 21.93 21.93 46.04 3.43
496 501 1.448308 GTCATGCACATCGATCGTACG 59.552 52.381 15.94 9.53 0.00 3.67
497 502 2.732366 AGTCATGCACATCGATCGTAC 58.268 47.619 15.94 2.07 0.00 3.67
498 503 3.115554 CAAGTCATGCACATCGATCGTA 58.884 45.455 15.94 2.15 0.00 3.43
499 504 1.929169 CAAGTCATGCACATCGATCGT 59.071 47.619 15.94 0.00 0.00 3.73
500 505 2.640375 CAAGTCATGCACATCGATCG 57.360 50.000 9.36 9.36 0.00 3.69
518 523 3.760738 TGTGTACCCTCAAATTCATGCA 58.239 40.909 0.00 0.00 0.00 3.96
541 546 2.995939 GTCGCTCAATCACACATCTCAA 59.004 45.455 0.00 0.00 0.00 3.02
550 555 3.483574 CGTTTACCATGTCGCTCAATCAC 60.484 47.826 0.00 0.00 0.00 3.06
554 559 2.333926 CTCGTTTACCATGTCGCTCAA 58.666 47.619 0.00 0.00 0.00 3.02
556 561 1.278238 CCTCGTTTACCATGTCGCTC 58.722 55.000 0.00 0.00 0.00 5.03
557 562 0.108329 CCCTCGTTTACCATGTCGCT 60.108 55.000 0.00 0.00 0.00 4.93
558 563 1.087771 CCCCTCGTTTACCATGTCGC 61.088 60.000 0.00 0.00 0.00 5.19
560 565 1.276989 TGACCCCTCGTTTACCATGTC 59.723 52.381 0.00 0.00 0.00 3.06
563 568 2.478292 AGATGACCCCTCGTTTACCAT 58.522 47.619 0.00 0.00 0.00 3.55
564 569 1.946984 AGATGACCCCTCGTTTACCA 58.053 50.000 0.00 0.00 0.00 3.25
565 570 3.196254 TGTTAGATGACCCCTCGTTTACC 59.804 47.826 0.00 0.00 0.00 2.85
566 571 4.460948 TGTTAGATGACCCCTCGTTTAC 57.539 45.455 0.00 0.00 0.00 2.01
567 572 5.046159 ACAATGTTAGATGACCCCTCGTTTA 60.046 40.000 0.00 0.00 0.00 2.01
569 574 3.263425 ACAATGTTAGATGACCCCTCGTT 59.737 43.478 0.00 0.00 0.00 3.85
578 583 4.068599 TGTCCGCAAACAATGTTAGATGA 58.931 39.130 0.00 0.00 0.00 2.92
583 588 1.941294 ACGTGTCCGCAAACAATGTTA 59.059 42.857 0.00 0.00 37.70 2.41
584 589 0.736053 ACGTGTCCGCAAACAATGTT 59.264 45.000 0.00 0.00 37.70 2.71
587 592 3.852286 TCTATACGTGTCCGCAAACAAT 58.148 40.909 0.00 0.00 37.70 2.71
588 593 3.300852 TCTATACGTGTCCGCAAACAA 57.699 42.857 0.00 0.00 37.70 2.83
592 597 4.841443 ATACATCTATACGTGTCCGCAA 57.159 40.909 0.00 0.00 37.70 4.85
595 600 4.201891 GCCCTATACATCTATACGTGTCCG 60.202 50.000 0.00 0.00 40.83 4.79
596 601 4.097589 GGCCCTATACATCTATACGTGTCC 59.902 50.000 0.00 0.00 0.00 4.02
600 605 3.960571 ACGGCCCTATACATCTATACGT 58.039 45.455 0.00 0.00 0.00 3.57
603 608 6.183360 GGCAAATACGGCCCTATACATCTATA 60.183 42.308 0.00 0.00 45.87 1.31
604 609 5.396436 GGCAAATACGGCCCTATACATCTAT 60.396 44.000 0.00 0.00 45.87 1.98
605 610 4.081309 GGCAAATACGGCCCTATACATCTA 60.081 45.833 0.00 0.00 45.87 1.98
606 611 3.307480 GGCAAATACGGCCCTATACATCT 60.307 47.826 0.00 0.00 45.87 2.90
618 623 2.094904 CCGGAGTTGGCAAATACGG 58.905 57.895 33.37 33.37 0.00 4.02
629 634 0.743345 GAGCATTTACCGCCGGAGTT 60.743 55.000 11.71 0.00 0.00 3.01
637 642 1.134220 TGCCCCTAAGAGCATTTACCG 60.134 52.381 0.00 0.00 33.08 4.02
638 643 2.729028 TGCCCCTAAGAGCATTTACC 57.271 50.000 0.00 0.00 33.08 2.85
702 709 2.031012 CTGACGGCCAAGAGCACA 59.969 61.111 2.24 0.00 46.50 4.57
709 716 1.695242 TCTTTACCTTCTGACGGCCAA 59.305 47.619 2.24 0.00 0.00 4.52
711 718 1.001633 TGTCTTTACCTTCTGACGGCC 59.998 52.381 0.00 0.00 32.64 6.13
838 854 2.885113 GGGCCGGCAATGAAGTTC 59.115 61.111 30.85 6.91 0.00 3.01
865 881 2.677003 CGCACGGGCCAACTTGTAG 61.677 63.158 2.82 0.00 36.38 2.74
925 943 0.744771 GGGAACCGAGTGGAAGATGC 60.745 60.000 0.00 0.00 40.86 3.91
926 944 3.460648 GGGAACCGAGTGGAAGATG 57.539 57.895 0.00 0.00 40.86 2.90
957 975 2.546321 CGTGCGCAGAGTGTGTTC 59.454 61.111 12.22 0.00 0.00 3.18
962 980 2.598619 TAGCTAGCGTGCGCAGAGTG 62.599 60.000 12.22 1.75 44.88 3.51
964 982 1.941734 GTAGCTAGCGTGCGCAGAG 60.942 63.158 12.22 9.80 44.88 3.35
965 983 2.102357 GTAGCTAGCGTGCGCAGA 59.898 61.111 12.22 5.27 44.88 4.26
966 984 2.642249 TACGTAGCTAGCGTGCGCAG 62.642 60.000 22.95 6.39 44.88 5.18
967 985 2.752939 TACGTAGCTAGCGTGCGCA 61.753 57.895 22.95 5.66 44.88 6.09
982 1000 3.248171 GCCTTCAGCGCTCGTACG 61.248 66.667 7.13 9.53 0.00 3.67
1139 1159 2.510238 ACAGCGCGAAGGAGCATC 60.510 61.111 12.10 0.00 41.93 3.91
1142 1162 3.184683 CAGACAGCGCGAAGGAGC 61.185 66.667 12.10 0.00 39.50 4.70
1143 1163 0.459237 ATTCAGACAGCGCGAAGGAG 60.459 55.000 12.10 0.00 0.00 3.69
1240 1314 1.769026 TTGAGAGAGGGACGATCTGG 58.231 55.000 0.00 0.00 0.00 3.86
1313 1394 1.227380 GGCGAATCCGATCTGCAGT 60.227 57.895 14.67 0.42 38.22 4.40
1406 1487 2.229792 GATGGGAAGACAAACACTGCA 58.770 47.619 0.00 0.00 0.00 4.41
1418 1499 2.040012 CAGATGATGGGAGGATGGGAAG 59.960 54.545 0.00 0.00 0.00 3.46
1426 1507 2.621998 GCAATGTTCAGATGATGGGAGG 59.378 50.000 0.00 0.00 0.00 4.30
1429 1510 1.684983 GGGCAATGTTCAGATGATGGG 59.315 52.381 0.00 0.00 0.00 4.00
1431 1512 4.098807 TGAATGGGCAATGTTCAGATGATG 59.901 41.667 0.00 0.00 0.00 3.07
1432 1513 4.283337 TGAATGGGCAATGTTCAGATGAT 58.717 39.130 0.00 0.00 0.00 2.45
1433 1514 3.699413 TGAATGGGCAATGTTCAGATGA 58.301 40.909 0.00 0.00 0.00 2.92
1447 1528 2.165030 GCAATTGGAGTGTCTGAATGGG 59.835 50.000 7.72 0.00 0.00 4.00
1451 1532 2.542020 TCGCAATTGGAGTGTCTGAA 57.458 45.000 7.72 0.00 0.00 3.02
1455 1536 3.730715 CAGTTTTTCGCAATTGGAGTGTC 59.269 43.478 7.72 0.00 0.00 3.67
1461 1542 4.610945 ACTTCTCAGTTTTTCGCAATTGG 58.389 39.130 7.72 0.00 0.00 3.16
1465 1546 5.063691 TCGTTAACTTCTCAGTTTTTCGCAA 59.936 36.000 3.71 0.00 40.66 4.85
1469 1550 5.051240 TCGCTCGTTAACTTCTCAGTTTTTC 60.051 40.000 3.71 0.00 40.66 2.29
1472 1553 3.973657 TCGCTCGTTAACTTCTCAGTTT 58.026 40.909 3.71 0.00 40.66 2.66
1473 1554 3.637998 TCGCTCGTTAACTTCTCAGTT 57.362 42.857 3.71 0.00 45.73 3.16
1475 1556 4.966850 TTTTCGCTCGTTAACTTCTCAG 57.033 40.909 3.71 0.00 0.00 3.35
1485 1568 4.245660 TCAGATCAAGATTTTCGCTCGTT 58.754 39.130 0.00 0.00 0.00 3.85
1491 1574 7.236474 TCGAAACATTCAGATCAAGATTTTCG 58.764 34.615 19.82 19.82 42.43 3.46
1492 1575 7.695618 CCTCGAAACATTCAGATCAAGATTTTC 59.304 37.037 0.00 2.45 0.00 2.29
1495 1578 6.093219 CACCTCGAAACATTCAGATCAAGATT 59.907 38.462 0.00 0.00 0.00 2.40
1496 1579 5.583854 CACCTCGAAACATTCAGATCAAGAT 59.416 40.000 0.00 0.00 0.00 2.40
1497 1580 4.931601 CACCTCGAAACATTCAGATCAAGA 59.068 41.667 0.00 0.00 0.00 3.02
1499 1582 3.436704 GCACCTCGAAACATTCAGATCAA 59.563 43.478 0.00 0.00 0.00 2.57
1500 1583 3.002791 GCACCTCGAAACATTCAGATCA 58.997 45.455 0.00 0.00 0.00 2.92
1501 1584 3.002791 TGCACCTCGAAACATTCAGATC 58.997 45.455 0.00 0.00 0.00 2.75
1502 1585 2.744202 GTGCACCTCGAAACATTCAGAT 59.256 45.455 5.22 0.00 0.00 2.90
1504 1587 2.146342 AGTGCACCTCGAAACATTCAG 58.854 47.619 14.63 0.00 0.00 3.02
1505 1588 2.254546 AGTGCACCTCGAAACATTCA 57.745 45.000 14.63 0.00 0.00 2.57
1506 1589 3.120304 GGTTAGTGCACCTCGAAACATTC 60.120 47.826 14.63 0.00 33.50 2.67
1507 1590 2.812011 GGTTAGTGCACCTCGAAACATT 59.188 45.455 14.63 0.00 33.50 2.71
1508 1591 2.224426 TGGTTAGTGCACCTCGAAACAT 60.224 45.455 14.63 0.00 37.75 2.71
1510 1593 1.529865 GTGGTTAGTGCACCTCGAAAC 59.470 52.381 14.63 10.21 37.75 2.78
1511 1594 1.873698 GTGGTTAGTGCACCTCGAAA 58.126 50.000 14.63 0.00 37.75 3.46
1514 1597 3.856508 CGTGGTTAGTGCACCTCG 58.143 61.111 14.63 7.20 44.74 4.63
1515 1598 2.380410 CGCGTGGTTAGTGCACCTC 61.380 63.158 14.63 4.03 37.75 3.85
1596 1679 1.153628 CGGGCTCACGAGGTAAAGG 60.154 63.158 0.00 0.00 35.47 3.11
1643 1726 2.547990 AGATACCGGGTGGAAGAAACT 58.452 47.619 10.66 0.00 39.21 2.66
1663 1746 6.785337 ATGCATCTCAGGAATCAAAATCAA 57.215 33.333 0.00 0.00 0.00 2.57
1664 1747 6.605995 AGAATGCATCTCAGGAATCAAAATCA 59.394 34.615 0.00 0.00 30.46 2.57
1665 1748 7.040473 AGAATGCATCTCAGGAATCAAAATC 57.960 36.000 0.00 0.00 30.46 2.17
1666 1749 7.419711 AAGAATGCATCTCAGGAATCAAAAT 57.580 32.000 0.00 0.00 37.42 1.82
1667 1750 6.403964 CGAAGAATGCATCTCAGGAATCAAAA 60.404 38.462 0.00 0.00 37.42 2.44
1696 1779 2.632544 CGGCCAGTGTACCTGACGA 61.633 63.158 2.24 0.00 44.49 4.20
1697 1780 1.945354 ATCGGCCAGTGTACCTGACG 61.945 60.000 2.24 13.76 44.49 4.35
1756 1839 2.342648 GGTATGTCGGCCGGGATC 59.657 66.667 27.83 13.92 0.00 3.36
1831 1914 0.880278 TGCACGAGAAGTTGCTGACC 60.880 55.000 0.00 0.00 0.00 4.02
2028 2111 2.731217 GCATGAACTGTTGAACACACC 58.269 47.619 0.00 0.00 0.00 4.16
2203 2286 4.329545 TCGTGGGTGCTCTTGGGC 62.330 66.667 0.00 0.00 0.00 5.36
2232 2315 0.319641 GAAGACGTCGAAGTTGGCCT 60.320 55.000 10.46 0.00 0.00 5.19
2293 2376 3.181506 GGATCAGCCTTGTTTGTTCGATC 60.182 47.826 0.00 0.00 0.00 3.69
2305 2388 2.270874 ATTTCCCGCGGATCAGCCTT 62.271 55.000 30.73 0.00 0.00 4.35
2345 2428 6.035866 CAGATCTCTTCTTCGGATTTGAACAG 59.964 42.308 0.00 0.00 29.93 3.16
2353 2436 3.320610 TCCCAGATCTCTTCTTCGGAT 57.679 47.619 0.00 0.00 29.14 4.18
2402 2487 0.671781 CCTCCGCTCAAGGAACAGTG 60.672 60.000 0.00 0.00 40.25 3.66
2403 2488 1.674057 CCTCCGCTCAAGGAACAGT 59.326 57.895 0.00 0.00 40.25 3.55
2407 2492 2.665000 CAGCCTCCGCTCAAGGAA 59.335 61.111 0.48 0.00 43.95 3.36
2412 2497 4.399395 CTTGGCAGCCTCCGCTCA 62.399 66.667 14.15 0.00 43.95 4.26
2413 2498 4.400961 ACTTGGCAGCCTCCGCTC 62.401 66.667 14.15 0.00 43.95 5.03
2445 2537 8.094548 TGCTGATTATTACTACCGCATTATTCT 58.905 33.333 0.00 0.00 0.00 2.40
2452 2544 4.617959 GACTGCTGATTATTACTACCGCA 58.382 43.478 0.00 0.00 0.00 5.69
2454 2546 5.104562 TCGACTGCTGATTATTACTACCG 57.895 43.478 0.00 0.00 0.00 4.02
2461 2553 3.133721 AGCTCCTTCGACTGCTGATTATT 59.866 43.478 0.00 0.00 34.19 1.40
2499 2591 5.297527 TCATGCAAATTGCTCTACATACCAG 59.702 40.000 19.34 0.00 45.31 4.00
2509 2601 5.165676 TCAAATCACTCATGCAAATTGCTC 58.834 37.500 19.34 0.00 45.31 4.26
2510 2602 5.142061 TCAAATCACTCATGCAAATTGCT 57.858 34.783 19.34 1.86 45.31 3.91
2511 2603 4.927425 ACTCAAATCACTCATGCAAATTGC 59.073 37.500 11.58 11.58 45.29 3.56
2512 2604 6.643360 TGAACTCAAATCACTCATGCAAATTG 59.357 34.615 0.00 0.00 0.00 2.32
2513 2605 6.751157 TGAACTCAAATCACTCATGCAAATT 58.249 32.000 0.00 0.00 0.00 1.82
2580 2672 5.234757 TGCATCAAAACAAAAATGACAGAGC 59.765 36.000 0.00 0.00 0.00 4.09
2592 2686 6.990798 TGGATTGACTAATGCATCAAAACAA 58.009 32.000 0.00 4.33 39.34 2.83
2602 2696 6.529125 CACAATGACTTTGGATTGACTAATGC 59.471 38.462 6.09 0.00 39.80 3.56
2642 2738 3.548818 GGTGACACTGCAATGAACTGTTC 60.549 47.826 13.49 13.49 0.00 3.18
2673 3741 5.450550 GGACATTGCAGTAAATTAGAAGGCC 60.451 44.000 0.00 0.00 0.00 5.19
2680 3748 4.947388 GTGAGGGGACATTGCAGTAAATTA 59.053 41.667 0.00 0.00 0.00 1.40
2701 3769 2.819115 CAGGCAGTATCTAGCACAGTG 58.181 52.381 0.00 0.00 0.00 3.66
2741 3825 3.002583 TGGAGCACCATCTCGGCA 61.003 61.111 0.00 0.00 41.77 5.69
2742 3826 2.202987 CTGGAGCACCATCTCGGC 60.203 66.667 2.38 0.00 45.87 5.54
2743 3827 1.142748 GACTGGAGCACCATCTCGG 59.857 63.158 2.38 0.00 45.87 4.63
2744 3828 1.226802 CGACTGGAGCACCATCTCG 60.227 63.158 2.38 9.46 45.87 4.04
2745 3829 0.179124 GACGACTGGAGCACCATCTC 60.179 60.000 2.38 0.65 45.87 2.75
2746 3830 1.893786 GACGACTGGAGCACCATCT 59.106 57.895 2.38 0.00 45.87 2.90
2747 3831 1.517257 CGACGACTGGAGCACCATC 60.517 63.158 2.38 3.17 45.87 3.51
2748 3832 2.573869 CGACGACTGGAGCACCAT 59.426 61.111 2.38 0.00 45.87 3.55
2749 3833 4.357947 GCGACGACTGGAGCACCA 62.358 66.667 1.91 1.91 44.76 4.17
2750 3834 3.575351 AAGCGACGACTGGAGCACC 62.575 63.158 0.00 0.00 0.00 5.01
2751 3835 2.049063 AAGCGACGACTGGAGCAC 60.049 61.111 0.00 0.00 0.00 4.40
2752 3836 2.258591 GAAGCGACGACTGGAGCA 59.741 61.111 0.00 0.00 0.00 4.26
2753 3837 2.507324 GGAAGCGACGACTGGAGC 60.507 66.667 0.00 0.00 0.00 4.70
2754 3838 2.202492 CGGAAGCGACGACTGGAG 60.202 66.667 0.00 0.00 0.00 3.86
2755 3839 3.744719 CCGGAAGCGACGACTGGA 61.745 66.667 0.00 0.00 32.36 3.86
2788 3878 4.007659 CGGCCTGGTTTTCTACTATGTTT 58.992 43.478 0.00 0.00 0.00 2.83
2821 3915 3.515286 CGGTTCCGCTCGCCTCTA 61.515 66.667 0.00 0.00 0.00 2.43
2913 4007 2.751436 CTGGACCATGGCCGTTGG 60.751 66.667 20.18 20.18 40.26 3.77
2939 4033 2.147820 CGACCTTTTCGGGTTCGTC 58.852 57.895 0.00 0.00 44.60 4.20
2956 4050 1.061711 GCAGCTTCATGTGCTACTTCG 59.938 52.381 13.70 5.07 38.92 3.79
2972 4066 1.026718 GGATGTGGTGTACCTGCAGC 61.027 60.000 8.66 4.58 36.82 5.25
2982 4076 4.641396 TGAAACTAGAACTGGATGTGGTG 58.359 43.478 0.00 0.00 0.00 4.17
2990 4084 6.692486 ACTGTATGACTGAAACTAGAACTGG 58.308 40.000 0.00 0.00 0.00 4.00
3004 4098 7.551262 TGTTTTGTTGTCTGTAACTGTATGACT 59.449 33.333 0.00 0.00 0.00 3.41
3008 4102 9.567848 CTTTTGTTTTGTTGTCTGTAACTGTAT 57.432 29.630 0.00 0.00 0.00 2.29
3023 4117 4.099419 GTCCCAGGTCATCTTTTGTTTTGT 59.901 41.667 0.00 0.00 0.00 2.83
3024 4118 4.342092 AGTCCCAGGTCATCTTTTGTTTTG 59.658 41.667 0.00 0.00 0.00 2.44
3032 4126 3.875369 GCAATGAAGTCCCAGGTCATCTT 60.875 47.826 0.00 0.00 30.76 2.40
3040 4134 3.613432 GCAAAAGAGCAATGAAGTCCCAG 60.613 47.826 0.00 0.00 0.00 4.45
3042 4136 2.560105 AGCAAAAGAGCAATGAAGTCCC 59.440 45.455 0.00 0.00 36.85 4.46
3043 4137 3.930634 AGCAAAAGAGCAATGAAGTCC 57.069 42.857 0.00 0.00 36.85 3.85
3045 4139 5.278660 CCTGTAAGCAAAAGAGCAATGAAGT 60.279 40.000 0.00 0.00 36.85 3.01
3051 4145 2.884639 GGTCCTGTAAGCAAAAGAGCAA 59.115 45.455 0.00 0.00 36.85 3.91
3052 4146 2.504367 GGTCCTGTAAGCAAAAGAGCA 58.496 47.619 0.00 0.00 36.85 4.26
3054 4148 3.040147 TCGGTCCTGTAAGCAAAAGAG 57.960 47.619 0.00 0.00 0.00 2.85
3055 4149 3.007506 TCATCGGTCCTGTAAGCAAAAGA 59.992 43.478 0.00 0.00 0.00 2.52
3056 4150 3.125316 GTCATCGGTCCTGTAAGCAAAAG 59.875 47.826 0.00 0.00 0.00 2.27
3071 4185 2.885644 CCGGCTTCGTGTCATCGG 60.886 66.667 0.00 0.00 0.00 4.18
3077 4191 3.509137 TTCTTCGCCGGCTTCGTGT 62.509 57.895 26.68 0.00 0.00 4.49
3078 4192 2.736995 TTCTTCGCCGGCTTCGTG 60.737 61.111 26.68 8.63 0.00 4.35
3080 4194 1.635663 AATGTTCTTCGCCGGCTTCG 61.636 55.000 26.68 9.50 0.00 3.79
3103 4217 2.081462 CAAATCCTACACCGGAACCAC 58.919 52.381 9.46 0.00 36.49 4.16
3113 4227 6.342906 CCTTACAATACCGACAAATCCTACA 58.657 40.000 0.00 0.00 0.00 2.74
3205 4319 4.522789 GGGAAGGTTTCAGAAAACAGCATA 59.477 41.667 13.57 0.00 45.44 3.14
3227 4341 9.362539 CATTCTCCTTAATTTGATTGTTCAAGG 57.637 33.333 0.00 0.00 42.60 3.61
3234 4348 7.917505 GGTGCTACATTCTCCTTAATTTGATTG 59.082 37.037 0.00 0.00 0.00 2.67
3242 4356 3.101437 TCCGGTGCTACATTCTCCTTAA 58.899 45.455 0.00 0.00 0.00 1.85
3243 4357 2.429610 GTCCGGTGCTACATTCTCCTTA 59.570 50.000 0.00 0.00 0.00 2.69
3245 4359 0.824759 GTCCGGTGCTACATTCTCCT 59.175 55.000 0.00 0.00 0.00 3.69
3246 4360 0.535335 TGTCCGGTGCTACATTCTCC 59.465 55.000 0.00 0.00 0.00 3.71
3247 4361 2.380084 TTGTCCGGTGCTACATTCTC 57.620 50.000 0.00 0.00 0.00 2.87
3248 4362 2.851263 TTTGTCCGGTGCTACATTCT 57.149 45.000 0.00 0.00 0.00 2.40
3250 4364 4.864704 AATTTTTGTCCGGTGCTACATT 57.135 36.364 0.00 0.00 0.00 2.71
3252 4366 5.299782 AGTTAAATTTTTGTCCGGTGCTACA 59.700 36.000 0.00 0.00 0.00 2.74
3257 4371 4.363999 TGCAGTTAAATTTTTGTCCGGTG 58.636 39.130 0.00 0.00 0.00 4.94
3258 4372 4.657436 TGCAGTTAAATTTTTGTCCGGT 57.343 36.364 0.00 0.00 0.00 5.28
3271 4385 5.827797 ACCAAGTTCTTTCTCATGCAGTTAA 59.172 36.000 0.00 0.00 0.00 2.01
3275 4389 4.154918 GGTACCAAGTTCTTTCTCATGCAG 59.845 45.833 7.15 0.00 0.00 4.41
3292 4406 4.460683 GCGCGGGTGATGGTACCA 62.461 66.667 18.99 18.99 42.69 3.25
3293 4407 4.460683 TGCGCGGGTGATGGTACC 62.461 66.667 8.83 4.43 40.10 3.34
3299 4413 1.212490 CAATTTGTGCGCGGGTGAT 59.788 52.632 8.83 0.00 0.00 3.06
3311 4425 1.695813 TCGCCGTGATTTGCAATTTG 58.304 45.000 0.00 0.00 0.00 2.32
3314 4428 0.101040 CCATCGCCGTGATTTGCAAT 59.899 50.000 0.00 0.00 34.13 3.56
3326 4440 1.078708 TTCTCCCGTTTCCATCGCC 60.079 57.895 0.00 0.00 0.00 5.54
3332 4446 3.836762 GAGGACTTCTCCCGTTTCC 57.163 57.895 0.00 0.00 37.25 3.13
3344 4458 4.583871 CTGCTGTAATCTTTTGGAGGACT 58.416 43.478 0.00 0.00 0.00 3.85
3349 4463 3.052455 TCGCTGCTGTAATCTTTTGGA 57.948 42.857 0.00 0.00 0.00 3.53
3362 4476 1.383523 GGGCTTTAGATTTCGCTGCT 58.616 50.000 0.00 0.00 0.00 4.24
3363 4477 0.028110 CGGGCTTTAGATTTCGCTGC 59.972 55.000 0.00 0.00 0.00 5.25
3364 4478 0.657840 CCGGGCTTTAGATTTCGCTG 59.342 55.000 0.00 0.00 0.00 5.18
3365 4479 1.095807 GCCGGGCTTTAGATTTCGCT 61.096 55.000 12.87 0.00 0.00 4.93
3366 4480 1.355563 GCCGGGCTTTAGATTTCGC 59.644 57.895 12.87 0.00 0.00 4.70
3367 4481 1.087771 ACGCCGGGCTTTAGATTTCG 61.088 55.000 18.34 0.00 0.00 3.46
3368 4482 2.776659 ACGCCGGGCTTTAGATTTC 58.223 52.632 18.34 0.00 0.00 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.