Multiple sequence alignment - TraesCS1A01G274700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G274700 chr1A 100.000 2435 0 0 1 2435 468821195 468823629 0.000000e+00 4497.0
1 TraesCS1A01G274700 chr1B 94.768 1510 76 3 929 2435 493239001 493240510 0.000000e+00 2348.0
2 TraesCS1A01G274700 chr1D 87.543 586 50 14 1 570 370135159 370135737 0.000000e+00 656.0
3 TraesCS1A01G274700 chr1D 79.104 134 28 0 570 703 59964120 59964253 2.580000e-15 93.5
4 TraesCS1A01G274700 chr7D 82.677 254 40 3 572 823 64181064 64180813 3.150000e-54 222.0
5 TraesCS1A01G274700 chr2D 82.283 254 37 6 571 820 590343305 590343554 1.900000e-51 213.0
6 TraesCS1A01G274700 chr7B 78.814 118 20 5 705 820 387649072 387649186 9.340000e-10 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G274700 chr1A 468821195 468823629 2434 False 4497 4497 100.000 1 2435 1 chr1A.!!$F1 2434
1 TraesCS1A01G274700 chr1B 493239001 493240510 1509 False 2348 2348 94.768 929 2435 1 chr1B.!!$F1 1506
2 TraesCS1A01G274700 chr1D 370135159 370135737 578 False 656 656 87.543 1 570 1 chr1D.!!$F2 569

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
618 631 0.03582 AGCGCGGGAATAGGAAAACA 60.036 50.0 8.83 0.0 0.0 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2265 2281 0.165944 CATTTCCGTCGACTGGTTGC 59.834 55.0 20.62 0.0 0.0 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.245518 TGTCGTCATCTATGTTGGGTG 57.754 47.619 0.00 0.00 0.00 4.61
36 37 6.381498 TCTATGTTGGGTGAAAACATCCTA 57.619 37.500 5.14 0.00 43.11 2.94
55 56 0.537143 AACCGTCTGCTCCAAATGCA 60.537 50.000 0.00 0.00 38.81 3.96
68 69 1.984990 CAAATGCATACACACCGCAAC 59.015 47.619 0.00 0.00 39.48 4.17
74 75 2.606795 GCATACACACCGCAACAAACAT 60.607 45.455 0.00 0.00 0.00 2.71
75 76 3.233578 CATACACACCGCAACAAACATC 58.766 45.455 0.00 0.00 0.00 3.06
76 77 1.098869 ACACACCGCAACAAACATCA 58.901 45.000 0.00 0.00 0.00 3.07
92 93 2.291365 CATCAGCCGATGTTCCAATCA 58.709 47.619 1.47 0.00 43.52 2.57
95 96 2.684374 TCAGCCGATGTTCCAATCATTG 59.316 45.455 0.00 0.00 0.00 2.82
99 100 3.376859 GCCGATGTTCCAATCATTGTACA 59.623 43.478 5.35 5.35 0.00 2.90
100 101 4.730613 GCCGATGTTCCAATCATTGTACAC 60.731 45.833 0.00 0.00 0.00 2.90
101 102 4.394610 CCGATGTTCCAATCATTGTACACA 59.605 41.667 0.00 1.46 0.00 3.72
103 104 6.023435 CGATGTTCCAATCATTGTACACAAG 58.977 40.000 0.00 0.00 39.47 3.16
105 106 6.312399 TGTTCCAATCATTGTACACAAGAC 57.688 37.500 0.00 0.00 39.47 3.01
106 107 5.240623 TGTTCCAATCATTGTACACAAGACC 59.759 40.000 0.00 0.00 39.47 3.85
109 110 4.761739 CCAATCATTGTACACAAGACCACT 59.238 41.667 0.00 0.00 39.47 4.00
110 111 5.241506 CCAATCATTGTACACAAGACCACTT 59.758 40.000 0.00 0.00 39.47 3.16
111 112 6.373779 CAATCATTGTACACAAGACCACTTC 58.626 40.000 0.00 0.00 39.47 3.01
112 113 5.290493 TCATTGTACACAAGACCACTTCT 57.710 39.130 0.00 0.00 39.47 2.85
113 114 5.056480 TCATTGTACACAAGACCACTTCTG 58.944 41.667 0.00 0.00 39.47 3.02
114 115 3.469008 TGTACACAAGACCACTTCTGG 57.531 47.619 0.00 0.00 44.26 3.86
115 116 3.035363 TGTACACAAGACCACTTCTGGA 58.965 45.455 0.00 0.00 40.55 3.86
116 117 2.918712 ACACAAGACCACTTCTGGAG 57.081 50.000 0.00 0.00 40.55 3.86
119 120 2.103094 CACAAGACCACTTCTGGAGACA 59.897 50.000 0.00 0.00 40.55 3.41
158 161 5.708948 TGCAAAGGAGATGAATTTTAACCG 58.291 37.500 0.00 0.00 0.00 4.44
182 185 6.346598 CGTTAAACACCATGTCAACTCTACAG 60.347 42.308 0.00 0.00 0.00 2.74
183 186 4.689612 AACACCATGTCAACTCTACAGT 57.310 40.909 0.00 0.00 0.00 3.55
210 215 5.162075 GGCGAGCATAATAAAGTAGACGAT 58.838 41.667 0.00 0.00 0.00 3.73
212 217 5.856986 GCGAGCATAATAAAGTAGACGATCA 59.143 40.000 0.00 0.00 0.00 2.92
218 223 7.815068 GCATAATAAAGTAGACGATCACATCCT 59.185 37.037 0.00 0.00 0.00 3.24
227 232 8.861086 AGTAGACGATCACATCCTTATAAATGT 58.139 33.333 0.00 0.00 36.56 2.71
269 274 6.928348 TTCATCTAACCGGTGACCATATAT 57.072 37.500 8.52 0.00 0.00 0.86
298 303 6.721318 ACAACATTGTGAGGTGGATATAAGT 58.279 36.000 0.00 0.00 40.49 2.24
313 318 8.796475 GTGGATATAAGTTTGATGCAATACCAT 58.204 33.333 0.00 0.00 0.00 3.55
325 330 4.295201 TGCAATACCATGAGTACCTAGGT 58.705 43.478 20.57 20.57 32.46 3.08
337 342 5.105310 TGAGTACCTAGGTGATGAAGAAAGC 60.105 44.000 25.33 0.00 0.00 3.51
339 344 2.832129 ACCTAGGTGATGAAGAAAGCGA 59.168 45.455 15.42 0.00 0.00 4.93
352 357 5.351465 TGAAGAAAGCGAACCACAATCTATC 59.649 40.000 0.00 0.00 0.00 2.08
358 363 3.458189 CGAACCACAATCTATCTGGACC 58.542 50.000 0.00 0.00 0.00 4.46
362 367 3.587061 ACCACAATCTATCTGGACCACAA 59.413 43.478 0.00 0.00 0.00 3.33
383 388 2.974794 AGCATTTGGGCTTCCTTTTCTT 59.025 40.909 0.00 0.00 42.71 2.52
394 399 0.610785 CCTTTTCTTAAGGGCCGCCA 60.611 55.000 12.58 0.00 33.79 5.69
407 412 3.261951 CGCCATTACACGCCTCCG 61.262 66.667 0.00 0.00 41.14 4.63
451 456 5.492524 TCCCAATAGGAGAAATTCTTCCAGT 59.507 40.000 11.92 0.00 40.93 4.00
458 463 7.264294 AGGAGAAATTCTTCCAGTGTTCTAT 57.736 36.000 11.92 0.00 31.28 1.98
460 465 6.540551 GGAGAAATTCTTCCAGTGTTCTATCC 59.459 42.308 0.00 0.00 31.28 2.59
461 466 7.264294 AGAAATTCTTCCAGTGTTCTATCCT 57.736 36.000 0.00 0.00 31.28 3.24
525 538 7.012421 ACAACAGATTTTCAGAGTGTTTCCTAC 59.988 37.037 0.00 0.00 0.00 3.18
526 539 5.696724 ACAGATTTTCAGAGTGTTTCCTACG 59.303 40.000 0.00 0.00 0.00 3.51
536 549 4.058817 AGTGTTTCCTACGAAAGAAGCAG 58.941 43.478 0.00 0.00 38.66 4.24
537 550 3.808174 GTGTTTCCTACGAAAGAAGCAGT 59.192 43.478 0.00 0.00 38.66 4.40
549 562 6.074005 CGAAAGAAGCAGTAAATCACAGTTC 58.926 40.000 0.00 0.00 0.00 3.01
552 565 3.788227 AGCAGTAAATCACAGTTCCCA 57.212 42.857 0.00 0.00 0.00 4.37
555 568 5.079643 AGCAGTAAATCACAGTTCCCAAAT 58.920 37.500 0.00 0.00 0.00 2.32
563 576 3.507233 TCACAGTTCCCAAATTGCTCATC 59.493 43.478 0.00 0.00 0.00 2.92
570 583 6.664816 AGTTCCCAAATTGCTCATCTGAATTA 59.335 34.615 0.00 0.00 0.00 1.40
571 584 6.704289 TCCCAAATTGCTCATCTGAATTAG 57.296 37.500 0.00 0.00 0.00 1.73
572 585 5.595542 TCCCAAATTGCTCATCTGAATTAGG 59.404 40.000 0.00 0.00 0.00 2.69
573 586 5.221382 CCCAAATTGCTCATCTGAATTAGGG 60.221 44.000 0.00 0.00 0.00 3.53
574 587 5.287226 CAAATTGCTCATCTGAATTAGGGC 58.713 41.667 0.00 0.00 0.00 5.19
575 588 3.939740 TTGCTCATCTGAATTAGGGCT 57.060 42.857 0.00 0.00 0.00 5.19
576 589 3.939740 TGCTCATCTGAATTAGGGCTT 57.060 42.857 0.00 0.00 0.00 4.35
577 590 3.813443 TGCTCATCTGAATTAGGGCTTC 58.187 45.455 0.00 0.00 0.00 3.86
578 591 3.457380 TGCTCATCTGAATTAGGGCTTCT 59.543 43.478 0.00 0.00 0.00 2.85
579 592 4.080129 TGCTCATCTGAATTAGGGCTTCTT 60.080 41.667 0.00 0.00 0.00 2.52
580 593 4.886489 GCTCATCTGAATTAGGGCTTCTTT 59.114 41.667 0.00 0.00 0.00 2.52
581 594 5.359292 GCTCATCTGAATTAGGGCTTCTTTT 59.641 40.000 0.00 0.00 0.00 2.27
582 595 6.543831 GCTCATCTGAATTAGGGCTTCTTTTA 59.456 38.462 0.00 0.00 0.00 1.52
583 596 7.230309 GCTCATCTGAATTAGGGCTTCTTTTAT 59.770 37.037 0.00 0.00 0.00 1.40
584 597 9.129532 CTCATCTGAATTAGGGCTTCTTTTATT 57.870 33.333 0.00 0.00 0.00 1.40
585 598 9.125026 TCATCTGAATTAGGGCTTCTTTTATTC 57.875 33.333 0.00 0.00 0.00 1.75
586 599 8.906867 CATCTGAATTAGGGCTTCTTTTATTCA 58.093 33.333 0.00 0.00 31.74 2.57
587 600 8.281212 TCTGAATTAGGGCTTCTTTTATTCAC 57.719 34.615 0.00 0.00 30.59 3.18
588 601 7.065803 TCTGAATTAGGGCTTCTTTTATTCACG 59.934 37.037 0.00 0.00 30.59 4.35
589 602 6.094881 TGAATTAGGGCTTCTTTTATTCACGG 59.905 38.462 0.00 0.00 29.66 4.94
590 603 2.723273 AGGGCTTCTTTTATTCACGGG 58.277 47.619 0.00 0.00 0.00 5.28
591 604 2.307686 AGGGCTTCTTTTATTCACGGGA 59.692 45.455 0.00 0.00 0.00 5.14
592 605 3.053619 AGGGCTTCTTTTATTCACGGGAT 60.054 43.478 0.00 0.00 0.00 3.85
593 606 3.699538 GGGCTTCTTTTATTCACGGGATT 59.300 43.478 0.00 0.00 0.00 3.01
594 607 4.159693 GGGCTTCTTTTATTCACGGGATTT 59.840 41.667 0.00 0.00 0.00 2.17
595 608 5.337250 GGGCTTCTTTTATTCACGGGATTTT 60.337 40.000 0.00 0.00 0.00 1.82
596 609 6.127563 GGGCTTCTTTTATTCACGGGATTTTA 60.128 38.462 0.00 0.00 0.00 1.52
597 610 7.317390 GGCTTCTTTTATTCACGGGATTTTAA 58.683 34.615 0.00 0.00 0.00 1.52
598 611 7.815549 GGCTTCTTTTATTCACGGGATTTTAAA 59.184 33.333 0.00 0.00 0.00 1.52
599 612 9.198837 GCTTCTTTTATTCACGGGATTTTAAAA 57.801 29.630 2.51 2.51 0.00 1.52
601 614 8.751302 TCTTTTATTCACGGGATTTTAAAAGC 57.249 30.769 21.49 7.67 34.88 3.51
602 615 7.539366 TCTTTTATTCACGGGATTTTAAAAGCG 59.461 33.333 21.49 9.81 34.88 4.68
603 616 2.622546 TCACGGGATTTTAAAAGCGC 57.377 45.000 19.81 19.81 34.42 5.92
606 619 3.339061 GGGATTTTAAAAGCGCGGG 57.661 52.632 16.04 0.00 0.00 6.13
607 620 0.812549 GGGATTTTAAAAGCGCGGGA 59.187 50.000 16.04 0.00 0.00 5.14
608 621 1.202817 GGGATTTTAAAAGCGCGGGAA 59.797 47.619 16.04 0.00 0.00 3.97
609 622 2.159156 GGGATTTTAAAAGCGCGGGAAT 60.159 45.455 16.04 0.00 0.00 3.01
610 623 3.067040 GGGATTTTAAAAGCGCGGGAATA 59.933 43.478 16.04 0.00 0.00 1.75
611 624 4.287720 GGATTTTAAAAGCGCGGGAATAG 58.712 43.478 8.83 0.00 0.00 1.73
612 625 3.768468 TTTTAAAAGCGCGGGAATAGG 57.232 42.857 8.83 0.00 0.00 2.57
613 626 2.695127 TTAAAAGCGCGGGAATAGGA 57.305 45.000 8.83 0.00 0.00 2.94
614 627 2.695127 TAAAAGCGCGGGAATAGGAA 57.305 45.000 8.83 0.00 0.00 3.36
615 628 1.828979 AAAAGCGCGGGAATAGGAAA 58.171 45.000 8.83 0.00 0.00 3.13
616 629 1.828979 AAAGCGCGGGAATAGGAAAA 58.171 45.000 8.83 0.00 0.00 2.29
617 630 1.092348 AAGCGCGGGAATAGGAAAAC 58.908 50.000 8.83 0.00 0.00 2.43
618 631 0.035820 AGCGCGGGAATAGGAAAACA 60.036 50.000 8.83 0.00 0.00 2.83
619 632 1.021968 GCGCGGGAATAGGAAAACAT 58.978 50.000 8.83 0.00 0.00 2.71
620 633 2.158871 AGCGCGGGAATAGGAAAACATA 60.159 45.455 8.83 0.00 0.00 2.29
621 634 2.223377 GCGCGGGAATAGGAAAACATAG 59.777 50.000 8.83 0.00 0.00 2.23
622 635 2.806244 CGCGGGAATAGGAAAACATAGG 59.194 50.000 0.00 0.00 0.00 2.57
623 636 2.552743 GCGGGAATAGGAAAACATAGGC 59.447 50.000 0.00 0.00 0.00 3.93
624 637 3.747708 GCGGGAATAGGAAAACATAGGCT 60.748 47.826 0.00 0.00 0.00 4.58
625 638 3.815401 CGGGAATAGGAAAACATAGGCTG 59.185 47.826 0.00 0.00 0.00 4.85
626 639 4.145052 GGGAATAGGAAAACATAGGCTGG 58.855 47.826 0.00 0.00 0.00 4.85
627 640 4.145052 GGAATAGGAAAACATAGGCTGGG 58.855 47.826 0.00 0.00 0.00 4.45
628 641 4.141251 GGAATAGGAAAACATAGGCTGGGA 60.141 45.833 0.00 0.00 0.00 4.37
629 642 5.445964 GAATAGGAAAACATAGGCTGGGAA 58.554 41.667 0.00 0.00 0.00 3.97
630 643 5.669798 ATAGGAAAACATAGGCTGGGAAT 57.330 39.130 0.00 0.00 0.00 3.01
631 644 3.635591 AGGAAAACATAGGCTGGGAATG 58.364 45.455 0.00 0.00 0.00 2.67
632 645 3.011708 AGGAAAACATAGGCTGGGAATGT 59.988 43.478 0.00 0.00 35.40 2.71
633 646 3.381590 GGAAAACATAGGCTGGGAATGTC 59.618 47.826 0.00 0.00 32.80 3.06
634 647 3.737559 AAACATAGGCTGGGAATGTCA 57.262 42.857 0.00 0.00 32.80 3.58
635 648 3.959495 AACATAGGCTGGGAATGTCAT 57.041 42.857 0.00 0.00 32.80 3.06
636 649 3.219176 ACATAGGCTGGGAATGTCATG 57.781 47.619 0.00 0.00 0.00 3.07
637 650 1.884579 CATAGGCTGGGAATGTCATGC 59.115 52.381 0.00 0.00 0.00 4.06
638 651 1.216064 TAGGCTGGGAATGTCATGCT 58.784 50.000 0.00 0.00 0.00 3.79
639 652 0.106819 AGGCTGGGAATGTCATGCTC 60.107 55.000 0.00 0.00 0.00 4.26
640 653 0.394762 GGCTGGGAATGTCATGCTCA 60.395 55.000 0.00 0.00 0.00 4.26
641 654 1.688772 GCTGGGAATGTCATGCTCAT 58.311 50.000 0.00 0.00 0.00 2.90
642 655 1.607628 GCTGGGAATGTCATGCTCATC 59.392 52.381 0.00 0.00 0.00 2.92
643 656 2.748798 GCTGGGAATGTCATGCTCATCT 60.749 50.000 0.00 0.00 0.00 2.90
644 657 3.139850 CTGGGAATGTCATGCTCATCTC 58.860 50.000 0.00 0.00 0.00 2.75
645 658 2.506644 TGGGAATGTCATGCTCATCTCA 59.493 45.455 0.00 0.00 0.00 3.27
646 659 3.054213 TGGGAATGTCATGCTCATCTCAA 60.054 43.478 0.00 0.00 0.00 3.02
647 660 4.142790 GGGAATGTCATGCTCATCTCAAT 58.857 43.478 4.24 0.00 0.00 2.57
648 661 4.215827 GGGAATGTCATGCTCATCTCAATC 59.784 45.833 4.24 0.00 0.00 2.67
649 662 5.064558 GGAATGTCATGCTCATCTCAATCT 58.935 41.667 4.24 0.00 0.00 2.40
650 663 5.531659 GGAATGTCATGCTCATCTCAATCTT 59.468 40.000 4.24 0.00 0.00 2.40
651 664 6.709397 GGAATGTCATGCTCATCTCAATCTTA 59.291 38.462 4.24 0.00 0.00 2.10
652 665 7.307870 GGAATGTCATGCTCATCTCAATCTTAC 60.308 40.741 4.24 0.00 0.00 2.34
653 666 5.981174 TGTCATGCTCATCTCAATCTTACA 58.019 37.500 0.00 0.00 0.00 2.41
654 667 6.047231 TGTCATGCTCATCTCAATCTTACAG 58.953 40.000 0.00 0.00 0.00 2.74
655 668 6.127253 TGTCATGCTCATCTCAATCTTACAGA 60.127 38.462 0.00 0.00 0.00 3.41
656 669 6.760298 GTCATGCTCATCTCAATCTTACAGAA 59.240 38.462 0.00 0.00 0.00 3.02
657 670 7.441760 GTCATGCTCATCTCAATCTTACAGAAT 59.558 37.037 0.00 0.00 0.00 2.40
658 671 7.991460 TCATGCTCATCTCAATCTTACAGAATT 59.009 33.333 0.00 0.00 0.00 2.17
659 672 8.622157 CATGCTCATCTCAATCTTACAGAATTT 58.378 33.333 0.00 0.00 0.00 1.82
660 673 8.571461 TGCTCATCTCAATCTTACAGAATTTT 57.429 30.769 0.00 0.00 0.00 1.82
661 674 9.017509 TGCTCATCTCAATCTTACAGAATTTTT 57.982 29.630 0.00 0.00 0.00 1.94
662 675 9.286946 GCTCATCTCAATCTTACAGAATTTTTG 57.713 33.333 0.00 0.00 0.00 2.44
673 686 9.883142 TCTTACAGAATTTTTGATTGTTTGGTT 57.117 25.926 0.00 0.00 0.00 3.67
674 687 9.919348 CTTACAGAATTTTTGATTGTTTGGTTG 57.081 29.630 0.00 0.00 0.00 3.77
675 688 6.784176 ACAGAATTTTTGATTGTTTGGTTGC 58.216 32.000 0.00 0.00 0.00 4.17
676 689 6.373774 ACAGAATTTTTGATTGTTTGGTTGCA 59.626 30.769 0.00 0.00 0.00 4.08
677 690 7.067251 ACAGAATTTTTGATTGTTTGGTTGCAT 59.933 29.630 0.00 0.00 0.00 3.96
678 691 7.588488 CAGAATTTTTGATTGTTTGGTTGCATC 59.412 33.333 0.00 0.00 0.00 3.91
679 692 6.939132 ATTTTTGATTGTTTGGTTGCATCA 57.061 29.167 0.00 0.00 0.00 3.07
680 693 6.939132 TTTTTGATTGTTTGGTTGCATCAT 57.061 29.167 0.00 0.00 0.00 2.45
681 694 8.618702 ATTTTTGATTGTTTGGTTGCATCATA 57.381 26.923 0.00 0.00 0.00 2.15
682 695 7.655236 TTTTGATTGTTTGGTTGCATCATAG 57.345 32.000 0.00 0.00 0.00 2.23
683 696 5.327616 TGATTGTTTGGTTGCATCATAGG 57.672 39.130 0.00 0.00 0.00 2.57
684 697 5.015515 TGATTGTTTGGTTGCATCATAGGA 58.984 37.500 0.00 0.00 0.00 2.94
685 698 5.479724 TGATTGTTTGGTTGCATCATAGGAA 59.520 36.000 0.00 0.00 0.00 3.36
686 699 5.798125 TTGTTTGGTTGCATCATAGGAAA 57.202 34.783 0.00 0.00 0.00 3.13
687 700 5.798125 TGTTTGGTTGCATCATAGGAAAA 57.202 34.783 0.00 0.00 0.00 2.29
688 701 6.166984 TGTTTGGTTGCATCATAGGAAAAA 57.833 33.333 0.00 0.00 0.00 1.94
689 702 5.988561 TGTTTGGTTGCATCATAGGAAAAAC 59.011 36.000 0.00 0.00 0.00 2.43
690 703 5.798125 TTGGTTGCATCATAGGAAAAACA 57.202 34.783 0.00 0.00 0.00 2.83
691 704 5.798125 TGGTTGCATCATAGGAAAAACAA 57.202 34.783 0.00 0.00 0.00 2.83
692 705 6.166984 TGGTTGCATCATAGGAAAAACAAA 57.833 33.333 0.00 0.00 0.00 2.83
693 706 6.222389 TGGTTGCATCATAGGAAAAACAAAG 58.778 36.000 0.00 0.00 0.00 2.77
694 707 6.041409 TGGTTGCATCATAGGAAAAACAAAGA 59.959 34.615 0.00 0.00 0.00 2.52
695 708 6.928492 GGTTGCATCATAGGAAAAACAAAGAA 59.072 34.615 0.00 0.00 0.00 2.52
696 709 7.603784 GGTTGCATCATAGGAAAAACAAAGAAT 59.396 33.333 0.00 0.00 0.00 2.40
697 710 8.992073 GTTGCATCATAGGAAAAACAAAGAATT 58.008 29.630 0.00 0.00 0.00 2.17
698 711 8.761575 TGCATCATAGGAAAAACAAAGAATTC 57.238 30.769 0.00 0.00 0.00 2.17
699 712 8.587608 TGCATCATAGGAAAAACAAAGAATTCT 58.412 29.630 0.88 0.88 0.00 2.40
700 713 9.428097 GCATCATAGGAAAAACAAAGAATTCTT 57.572 29.630 15.11 15.11 37.91 2.52
703 716 9.677567 TCATAGGAAAAACAAAGAATTCTTTCG 57.322 29.630 26.87 22.75 43.72 3.46
704 717 9.677567 CATAGGAAAAACAAAGAATTCTTTCGA 57.322 29.630 26.87 12.86 43.72 3.71
706 719 8.634475 AGGAAAAACAAAGAATTCTTTCGAAG 57.366 30.769 26.87 18.88 43.72 3.79
707 720 8.466798 AGGAAAAACAAAGAATTCTTTCGAAGA 58.533 29.630 26.87 0.00 43.72 2.87
708 721 8.746751 GGAAAAACAAAGAATTCTTTCGAAGAG 58.253 33.333 26.87 17.96 43.72 2.85
709 722 8.634475 AAAAACAAAGAATTCTTTCGAAGAGG 57.366 30.769 26.87 17.35 43.72 3.69
710 723 6.944234 AACAAAGAATTCTTTCGAAGAGGT 57.056 33.333 26.87 17.91 43.72 3.85
711 724 6.944234 ACAAAGAATTCTTTCGAAGAGGTT 57.056 33.333 26.87 3.42 43.72 3.50
712 725 7.334844 ACAAAGAATTCTTTCGAAGAGGTTT 57.665 32.000 26.87 2.92 43.72 3.27
713 726 7.772166 ACAAAGAATTCTTTCGAAGAGGTTTT 58.228 30.769 26.87 2.73 43.72 2.43
714 727 7.702348 ACAAAGAATTCTTTCGAAGAGGTTTTG 59.298 33.333 26.87 15.73 43.72 2.44
715 728 7.568199 AAGAATTCTTTCGAAGAGGTTTTGA 57.432 32.000 15.11 0.00 39.03 2.69
716 729 7.195839 AGAATTCTTTCGAAGAGGTTTTGAG 57.804 36.000 0.88 0.00 39.03 3.02
717 730 6.768381 AGAATTCTTTCGAAGAGGTTTTGAGT 59.232 34.615 0.88 0.00 39.03 3.41
718 731 5.734855 TTCTTTCGAAGAGGTTTTGAGTG 57.265 39.130 0.00 0.00 39.03 3.51
719 732 4.127171 TCTTTCGAAGAGGTTTTGAGTGG 58.873 43.478 0.00 0.00 38.43 4.00
720 733 3.830744 TTCGAAGAGGTTTTGAGTGGA 57.169 42.857 0.00 0.00 38.43 4.02
721 734 4.351874 TTCGAAGAGGTTTTGAGTGGAT 57.648 40.909 0.00 0.00 38.43 3.41
722 735 3.664107 TCGAAGAGGTTTTGAGTGGATG 58.336 45.455 0.00 0.00 0.00 3.51
723 736 2.160417 CGAAGAGGTTTTGAGTGGATGC 59.840 50.000 0.00 0.00 0.00 3.91
724 737 3.416156 GAAGAGGTTTTGAGTGGATGCT 58.584 45.455 0.00 0.00 0.00 3.79
725 738 4.579869 GAAGAGGTTTTGAGTGGATGCTA 58.420 43.478 0.00 0.00 0.00 3.49
726 739 4.851639 AGAGGTTTTGAGTGGATGCTAT 57.148 40.909 0.00 0.00 0.00 2.97
727 740 5.957771 AGAGGTTTTGAGTGGATGCTATA 57.042 39.130 0.00 0.00 0.00 1.31
728 741 6.313519 AGAGGTTTTGAGTGGATGCTATAA 57.686 37.500 0.00 0.00 0.00 0.98
729 742 6.721318 AGAGGTTTTGAGTGGATGCTATAAA 58.279 36.000 0.00 0.00 0.00 1.40
730 743 7.349598 AGAGGTTTTGAGTGGATGCTATAAAT 58.650 34.615 0.00 0.00 0.00 1.40
731 744 7.500559 AGAGGTTTTGAGTGGATGCTATAAATC 59.499 37.037 0.00 0.00 0.00 2.17
732 745 6.547510 AGGTTTTGAGTGGATGCTATAAATCC 59.452 38.462 7.04 7.04 43.44 3.01
733 746 6.239036 GGTTTTGAGTGGATGCTATAAATCCC 60.239 42.308 10.31 4.18 42.63 3.85
734 747 5.645056 TTGAGTGGATGCTATAAATCCCA 57.355 39.130 10.31 0.00 42.63 4.37
735 748 5.848286 TGAGTGGATGCTATAAATCCCAT 57.152 39.130 10.31 1.58 42.63 4.00
736 749 5.563592 TGAGTGGATGCTATAAATCCCATG 58.436 41.667 10.31 0.00 42.63 3.66
737 750 5.310331 TGAGTGGATGCTATAAATCCCATGA 59.690 40.000 10.31 0.00 42.63 3.07
738 751 6.183361 TGAGTGGATGCTATAAATCCCATGAA 60.183 38.462 10.31 0.00 42.63 2.57
739 752 6.613699 AGTGGATGCTATAAATCCCATGAAA 58.386 36.000 10.31 0.00 42.63 2.69
740 753 7.068702 AGTGGATGCTATAAATCCCATGAAAA 58.931 34.615 10.31 0.00 42.63 2.29
741 754 7.564660 AGTGGATGCTATAAATCCCATGAAAAA 59.435 33.333 10.31 0.00 42.63 1.94
790 803 8.525290 AAAATTCTATAGGGTTCAATCCTGTG 57.475 34.615 0.00 0.00 35.92 3.66
791 804 7.451731 AATTCTATAGGGTTCAATCCTGTGA 57.548 36.000 0.00 0.00 35.92 3.58
792 805 6.884472 TTCTATAGGGTTCAATCCTGTGAA 57.116 37.500 0.00 0.00 35.92 3.18
793 806 7.451731 TTCTATAGGGTTCAATCCTGTGAAT 57.548 36.000 0.00 0.00 39.61 2.57
794 807 7.067496 TCTATAGGGTTCAATCCTGTGAATC 57.933 40.000 0.00 0.00 39.61 2.52
795 808 5.715439 ATAGGGTTCAATCCTGTGAATCA 57.285 39.130 0.00 0.00 39.90 2.57
796 809 4.387026 AGGGTTCAATCCTGTGAATCAA 57.613 40.909 0.00 0.00 39.90 2.57
797 810 4.739793 AGGGTTCAATCCTGTGAATCAAA 58.260 39.130 0.00 0.00 39.90 2.69
798 811 4.524328 AGGGTTCAATCCTGTGAATCAAAC 59.476 41.667 0.00 0.00 39.90 2.93
799 812 4.280677 GGGTTCAATCCTGTGAATCAAACA 59.719 41.667 1.04 0.00 39.90 2.83
800 813 5.221422 GGGTTCAATCCTGTGAATCAAACAA 60.221 40.000 1.04 0.00 39.90 2.83
801 814 5.691754 GGTTCAATCCTGTGAATCAAACAAC 59.308 40.000 0.00 0.00 39.61 3.32
802 815 5.452078 TCAATCCTGTGAATCAAACAACC 57.548 39.130 0.00 0.00 0.00 3.77
803 816 4.892345 TCAATCCTGTGAATCAAACAACCA 59.108 37.500 0.00 0.00 0.00 3.67
804 817 5.362143 TCAATCCTGTGAATCAAACAACCAA 59.638 36.000 0.00 0.00 0.00 3.67
805 818 4.647424 TCCTGTGAATCAAACAACCAAC 57.353 40.909 0.00 0.00 0.00 3.77
806 819 4.019858 TCCTGTGAATCAAACAACCAACA 58.980 39.130 0.00 0.00 0.00 3.33
807 820 4.648762 TCCTGTGAATCAAACAACCAACAT 59.351 37.500 0.00 0.00 0.00 2.71
808 821 5.128499 TCCTGTGAATCAAACAACCAACATT 59.872 36.000 0.00 0.00 0.00 2.71
809 822 5.234757 CCTGTGAATCAAACAACCAACATTG 59.765 40.000 0.00 0.00 35.59 2.82
810 823 5.970592 TGTGAATCAAACAACCAACATTGA 58.029 33.333 0.00 0.00 36.35 2.57
811 824 6.401394 TGTGAATCAAACAACCAACATTGAA 58.599 32.000 0.00 0.00 35.62 2.69
812 825 6.875726 TGTGAATCAAACAACCAACATTGAAA 59.124 30.769 0.00 0.00 35.62 2.69
813 826 7.388776 TGTGAATCAAACAACCAACATTGAAAA 59.611 29.630 0.00 0.00 35.62 2.29
814 827 8.233190 GTGAATCAAACAACCAACATTGAAAAA 58.767 29.630 0.00 0.00 35.62 1.94
862 875 9.534565 GCAAATTCCTAAAATTTCTAATCCTCC 57.465 33.333 0.00 0.00 0.00 4.30
869 882 9.317936 CCTAAAATTTCTAATCCTCCAAAATGC 57.682 33.333 0.00 0.00 0.00 3.56
870 883 9.317936 CTAAAATTTCTAATCCTCCAAAATGCC 57.682 33.333 0.00 0.00 0.00 4.40
871 884 7.500629 AAATTTCTAATCCTCCAAAATGCCT 57.499 32.000 0.00 0.00 0.00 4.75
872 885 8.608185 AAATTTCTAATCCTCCAAAATGCCTA 57.392 30.769 0.00 0.00 0.00 3.93
873 886 8.788238 AATTTCTAATCCTCCAAAATGCCTAT 57.212 30.769 0.00 0.00 0.00 2.57
874 887 7.587037 TTTCTAATCCTCCAAAATGCCTATG 57.413 36.000 0.00 0.00 0.00 2.23
875 888 6.514012 TCTAATCCTCCAAAATGCCTATGA 57.486 37.500 0.00 0.00 0.00 2.15
876 889 6.910191 TCTAATCCTCCAAAATGCCTATGAA 58.090 36.000 0.00 0.00 0.00 2.57
877 890 7.353525 TCTAATCCTCCAAAATGCCTATGAAA 58.646 34.615 0.00 0.00 0.00 2.69
878 891 6.872585 AATCCTCCAAAATGCCTATGAAAA 57.127 33.333 0.00 0.00 0.00 2.29
879 892 7.441903 AATCCTCCAAAATGCCTATGAAAAT 57.558 32.000 0.00 0.00 0.00 1.82
880 893 8.551682 AATCCTCCAAAATGCCTATGAAAATA 57.448 30.769 0.00 0.00 0.00 1.40
881 894 7.346751 TCCTCCAAAATGCCTATGAAAATAC 57.653 36.000 0.00 0.00 0.00 1.89
882 895 7.125391 TCCTCCAAAATGCCTATGAAAATACT 58.875 34.615 0.00 0.00 0.00 2.12
883 896 7.619302 TCCTCCAAAATGCCTATGAAAATACTT 59.381 33.333 0.00 0.00 0.00 2.24
884 897 7.707893 CCTCCAAAATGCCTATGAAAATACTTG 59.292 37.037 0.00 0.00 0.00 3.16
885 898 7.555087 TCCAAAATGCCTATGAAAATACTTGG 58.445 34.615 0.00 0.00 0.00 3.61
886 899 7.398618 TCCAAAATGCCTATGAAAATACTTGGA 59.601 33.333 0.00 0.00 36.10 3.53
887 900 8.040132 CCAAAATGCCTATGAAAATACTTGGAA 58.960 33.333 0.00 0.00 32.03 3.53
888 901 9.603921 CAAAATGCCTATGAAAATACTTGGAAT 57.396 29.630 0.00 0.00 0.00 3.01
889 902 9.822185 AAAATGCCTATGAAAATACTTGGAATC 57.178 29.630 0.00 0.00 0.00 2.52
890 903 8.537728 AATGCCTATGAAAATACTTGGAATCA 57.462 30.769 0.00 0.00 0.00 2.57
891 904 7.953005 TGCCTATGAAAATACTTGGAATCAA 57.047 32.000 0.00 0.00 0.00 2.57
892 905 8.359875 TGCCTATGAAAATACTTGGAATCAAA 57.640 30.769 0.00 0.00 31.77 2.69
893 906 8.469200 TGCCTATGAAAATACTTGGAATCAAAG 58.531 33.333 0.00 0.00 31.77 2.77
894 907 7.922811 GCCTATGAAAATACTTGGAATCAAAGG 59.077 37.037 2.05 0.00 31.77 3.11
895 908 9.189156 CCTATGAAAATACTTGGAATCAAAGGA 57.811 33.333 2.05 0.00 31.77 3.36
897 910 6.924111 TGAAAATACTTGGAATCAAAGGAGC 58.076 36.000 2.05 0.00 31.77 4.70
898 911 5.921962 AAATACTTGGAATCAAAGGAGCC 57.078 39.130 2.05 0.00 31.77 4.70
899 912 2.222227 ACTTGGAATCAAAGGAGCCC 57.778 50.000 2.05 0.00 31.77 5.19
900 913 1.713078 ACTTGGAATCAAAGGAGCCCT 59.287 47.619 2.05 0.00 33.87 5.19
902 915 3.333680 ACTTGGAATCAAAGGAGCCCTTA 59.666 43.478 2.05 0.00 43.92 2.69
903 916 4.202673 ACTTGGAATCAAAGGAGCCCTTAA 60.203 41.667 2.05 0.54 43.92 1.85
904 917 4.608170 TGGAATCAAAGGAGCCCTTAAT 57.392 40.909 6.88 2.57 43.92 1.40
905 918 4.536765 TGGAATCAAAGGAGCCCTTAATC 58.463 43.478 6.88 4.22 43.92 1.75
906 919 4.230502 TGGAATCAAAGGAGCCCTTAATCT 59.769 41.667 6.88 0.00 43.92 2.40
907 920 4.582240 GGAATCAAAGGAGCCCTTAATCTG 59.418 45.833 6.88 2.90 43.92 2.90
908 921 3.004752 TCAAAGGAGCCCTTAATCTGC 57.995 47.619 6.88 0.00 43.92 4.26
909 922 2.578021 TCAAAGGAGCCCTTAATCTGCT 59.422 45.455 6.88 0.00 43.92 4.24
910 923 3.010584 TCAAAGGAGCCCTTAATCTGCTT 59.989 43.478 6.88 0.00 43.92 3.91
911 924 3.289407 AAGGAGCCCTTAATCTGCTTC 57.711 47.619 4.81 0.00 42.74 3.86
912 925 2.200081 AGGAGCCCTTAATCTGCTTCA 58.800 47.619 0.00 0.00 34.99 3.02
913 926 2.092699 AGGAGCCCTTAATCTGCTTCAC 60.093 50.000 0.00 0.00 34.99 3.18
914 927 2.092699 GGAGCCCTTAATCTGCTTCACT 60.093 50.000 0.00 0.00 34.99 3.41
915 928 3.615155 GAGCCCTTAATCTGCTTCACTT 58.385 45.455 0.00 0.00 34.99 3.16
916 929 4.013050 GAGCCCTTAATCTGCTTCACTTT 58.987 43.478 0.00 0.00 34.99 2.66
917 930 3.760684 AGCCCTTAATCTGCTTCACTTTG 59.239 43.478 0.00 0.00 29.17 2.77
918 931 3.674410 GCCCTTAATCTGCTTCACTTTGC 60.674 47.826 0.00 0.00 0.00 3.68
919 932 3.760684 CCCTTAATCTGCTTCACTTTGCT 59.239 43.478 0.00 0.00 0.00 3.91
920 933 4.943705 CCCTTAATCTGCTTCACTTTGCTA 59.056 41.667 0.00 0.00 0.00 3.49
921 934 5.415701 CCCTTAATCTGCTTCACTTTGCTAA 59.584 40.000 0.00 0.00 0.00 3.09
922 935 6.096001 CCCTTAATCTGCTTCACTTTGCTAAT 59.904 38.462 0.00 0.00 0.00 1.73
923 936 7.192232 CCTTAATCTGCTTCACTTTGCTAATC 58.808 38.462 0.00 0.00 0.00 1.75
924 937 7.148188 CCTTAATCTGCTTCACTTTGCTAATCA 60.148 37.037 0.00 0.00 0.00 2.57
925 938 5.557891 ATCTGCTTCACTTTGCTAATCAC 57.442 39.130 0.00 0.00 0.00 3.06
926 939 4.388485 TCTGCTTCACTTTGCTAATCACA 58.612 39.130 0.00 0.00 0.00 3.58
927 940 5.005740 TCTGCTTCACTTTGCTAATCACAT 58.994 37.500 0.00 0.00 0.00 3.21
934 947 6.437928 TCACTTTGCTAATCACATTCACAAC 58.562 36.000 0.00 0.00 0.00 3.32
938 951 5.764487 TGCTAATCACATTCACAACAACA 57.236 34.783 0.00 0.00 0.00 3.33
955 968 2.275134 ACACATGTGCAATGGTCAGA 57.725 45.000 25.68 0.00 0.00 3.27
958 971 2.293955 CACATGTGCAATGGTCAGAACA 59.706 45.455 13.94 0.00 0.00 3.18
959 972 2.294233 ACATGTGCAATGGTCAGAACAC 59.706 45.455 0.00 0.00 0.00 3.32
961 974 2.373224 TGTGCAATGGTCAGAACACAA 58.627 42.857 0.00 0.00 35.28 3.33
962 975 2.957680 TGTGCAATGGTCAGAACACAAT 59.042 40.909 0.00 0.00 35.28 2.71
964 977 4.216042 TGTGCAATGGTCAGAACACAATAG 59.784 41.667 0.00 0.00 35.28 1.73
965 978 3.191162 TGCAATGGTCAGAACACAATAGC 59.809 43.478 0.00 0.00 0.00 2.97
966 979 3.191162 GCAATGGTCAGAACACAATAGCA 59.809 43.478 0.00 0.00 0.00 3.49
975 991 7.066284 GGTCAGAACACAATAGCAGACATATTT 59.934 37.037 0.00 0.00 0.00 1.40
976 992 7.907045 GTCAGAACACAATAGCAGACATATTTG 59.093 37.037 0.00 0.00 0.00 2.32
991 1007 8.714179 CAGACATATTTGCATCAACAAAACAAT 58.286 29.630 0.00 0.00 42.45 2.71
995 1011 8.927721 CATATTTGCATCAACAAAACAATCTGA 58.072 29.630 0.00 0.00 42.45 3.27
1003 1019 6.380995 TCAACAAAACAATCTGAATCGATGG 58.619 36.000 0.00 0.00 0.00 3.51
1017 1033 3.314307 TCGATGGAATCTACACCCTCT 57.686 47.619 0.00 0.00 42.58 3.69
1043 1059 2.270205 CTGCGAGGCCAGGATGTT 59.730 61.111 5.01 0.00 0.00 2.71
1058 1074 2.228822 GGATGTTCAGAACGCCAACAAT 59.771 45.455 16.38 0.96 33.84 2.71
1083 1099 3.496331 TCCAAATTCAGGTTTCAGGTCC 58.504 45.455 0.00 0.00 0.00 4.46
1167 1183 3.457380 TCTTCATGCTCCTGCTCCTTATT 59.543 43.478 0.00 0.00 40.48 1.40
1169 1185 2.773661 TCATGCTCCTGCTCCTTATTGA 59.226 45.455 0.00 0.00 40.48 2.57
1182 1198 3.119101 TCCTTATTGACTTCCTCGTGCTC 60.119 47.826 0.00 0.00 0.00 4.26
1185 1201 2.876645 GACTTCCTCGTGCTCGCG 60.877 66.667 0.00 0.00 36.96 5.87
1233 1249 1.968017 CACGTTGGCCAGCATGACT 60.968 57.895 20.42 0.00 39.69 3.41
1242 1258 1.091771 CCAGCATGACTAGGTTGCCG 61.092 60.000 0.00 1.45 39.69 5.69
1260 1276 1.733399 GACGTCGTCTGGTTCCAGC 60.733 63.158 18.09 8.22 34.33 4.85
1266 1282 4.717629 TCTGGTTCCAGCGCGACG 62.718 66.667 12.10 0.00 34.33 5.12
1302 1318 4.771356 ACGGCCGTGTCGACATCG 62.771 66.667 33.75 23.81 41.45 3.84
1358 1374 0.107703 ATCTTCGCATCGGCAGGAAA 60.108 50.000 0.00 0.00 41.24 3.13
1380 1396 3.812262 TGGCATGTCCAGTATGAGATTG 58.188 45.455 4.93 0.00 40.72 2.67
1407 1423 0.669318 GCACGATTTGTCCTGACCGA 60.669 55.000 0.00 0.00 0.00 4.69
1462 1478 0.947244 GCCAGGTTCGATGCCATAAG 59.053 55.000 8.90 0.00 0.00 1.73
1487 1503 2.186076 CTTCATGCGGTCGAAGTAGTC 58.814 52.381 0.00 0.00 35.06 2.59
1539 1555 3.695606 GCTGACAGGAGCCCGACA 61.696 66.667 4.26 0.00 32.35 4.35
1650 1666 1.485838 CGCTGATCATCGTGCTCCAC 61.486 60.000 10.72 0.00 0.00 4.02
1734 1750 0.030773 TCGCGTACATCTCCATCAGC 59.969 55.000 5.77 0.00 0.00 4.26
1754 1770 2.032894 GCGCATTGCATACGTATGTCTT 60.033 45.455 30.63 16.11 45.45 3.01
1815 1831 3.230245 CCTAGCTCCAGGGCTCCG 61.230 72.222 0.00 0.00 42.97 4.63
1851 1867 2.809601 AACACCGCGACGATGCTC 60.810 61.111 8.23 0.00 0.00 4.26
1863 1879 4.796231 ATGCTCACGTCGTCCGGC 62.796 66.667 0.00 0.67 42.24 6.13
1884 1900 3.518590 CTCAAAGCCTTCCATTTGCATC 58.481 45.455 0.00 0.00 36.55 3.91
1885 1901 2.898612 TCAAAGCCTTCCATTTGCATCA 59.101 40.909 0.00 0.00 36.55 3.07
1888 1904 1.551883 AGCCTTCCATTTGCATCAACC 59.448 47.619 0.00 0.00 0.00 3.77
1925 1941 4.821589 CGAGAAGTCCCCCGCTGC 62.822 72.222 0.00 0.00 0.00 5.25
1943 1959 2.975536 CGTGTACCCGGACACCAT 59.024 61.111 18.01 0.00 45.77 3.55
1962 1978 1.522668 TTGCAGTCCAGGAAACGATG 58.477 50.000 0.00 0.00 0.00 3.84
1971 1987 2.028112 CCAGGAAACGATGGTCTTCTCA 60.028 50.000 0.00 0.00 0.00 3.27
1988 2004 4.842531 TCTCAGGCATGGAGTTGAATAA 57.157 40.909 0.00 0.00 34.04 1.40
1989 2005 4.517285 TCTCAGGCATGGAGTTGAATAAC 58.483 43.478 0.00 0.00 37.06 1.89
2022 2038 3.842923 ATCTGACCCAGCCTCGCG 61.843 66.667 0.00 0.00 0.00 5.87
2037 2053 2.851104 GCGTGCGCCGATATAACC 59.149 61.111 20.06 0.00 39.56 2.85
2088 2104 4.072088 CCGTCGAACACCTTGCGC 62.072 66.667 0.00 0.00 0.00 6.09
2138 2154 4.582701 ACATCTCGATCATGGAGTTCTC 57.417 45.455 8.84 0.00 33.26 2.87
2200 2216 2.914097 GCACCTGCTTGCCCAGTT 60.914 61.111 0.00 0.00 36.42 3.16
2205 2221 2.032528 TGCTTGCCCAGTTCGAGG 59.967 61.111 0.00 0.00 0.00 4.63
2306 2322 2.482374 GCACCTCAGCATGCGAAC 59.518 61.111 13.01 0.00 34.76 3.95
2389 2405 1.535687 AGGTGTAGGTTGGGCTCGT 60.536 57.895 0.00 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.335579 AGCAGACGGTTAGGATGTTTTC 58.664 45.455 0.00 0.00 0.00 2.29
36 37 0.537143 TGCATTTGGAGCAGACGGTT 60.537 50.000 0.00 0.00 37.02 4.44
55 56 2.881513 TGATGTTTGTTGCGGTGTGTAT 59.118 40.909 0.00 0.00 0.00 2.29
74 75 2.684374 CAATGATTGGAACATCGGCTGA 59.316 45.455 0.00 0.00 39.30 4.26
75 76 2.424601 ACAATGATTGGAACATCGGCTG 59.575 45.455 10.27 0.00 39.30 4.85
76 77 2.726821 ACAATGATTGGAACATCGGCT 58.273 42.857 10.27 0.00 39.30 5.52
89 90 5.702670 CAGAAGTGGTCTTGTGTACAATGAT 59.297 40.000 0.00 0.00 39.24 2.45
92 93 4.102524 TCCAGAAGTGGTCTTGTGTACAAT 59.897 41.667 0.00 0.00 45.28 2.71
95 96 3.321111 TCTCCAGAAGTGGTCTTGTGTAC 59.679 47.826 4.85 0.00 45.28 2.90
99 100 2.366916 CTGTCTCCAGAAGTGGTCTTGT 59.633 50.000 0.00 0.00 45.28 3.16
100 101 2.366916 ACTGTCTCCAGAAGTGGTCTTG 59.633 50.000 0.00 0.00 45.28 3.02
101 102 2.366916 CACTGTCTCCAGAAGTGGTCTT 59.633 50.000 0.00 0.00 45.28 3.01
103 104 1.689273 ACACTGTCTCCAGAAGTGGTC 59.311 52.381 16.54 0.00 44.49 4.02
105 106 2.160822 CACACTGTCTCCAGAAGTGG 57.839 55.000 16.54 0.00 44.49 4.00
106 107 1.414181 ACCACACTGTCTCCAGAAGTG 59.586 52.381 13.16 13.16 45.46 3.16
109 110 5.302059 GCTATATACCACACTGTCTCCAGAA 59.698 44.000 0.00 0.00 41.50 3.02
110 111 4.827835 GCTATATACCACACTGTCTCCAGA 59.172 45.833 0.00 0.00 41.50 3.86
111 112 4.021894 GGCTATATACCACACTGTCTCCAG 60.022 50.000 0.00 0.00 44.68 3.86
112 113 3.895656 GGCTATATACCACACTGTCTCCA 59.104 47.826 0.00 0.00 0.00 3.86
113 114 4.021894 CAGGCTATATACCACACTGTCTCC 60.022 50.000 0.00 0.00 0.00 3.71
114 115 4.559704 GCAGGCTATATACCACACTGTCTC 60.560 50.000 0.00 0.00 0.00 3.36
115 116 3.322254 GCAGGCTATATACCACACTGTCT 59.678 47.826 0.00 0.00 0.00 3.41
116 117 3.069586 TGCAGGCTATATACCACACTGTC 59.930 47.826 0.00 0.00 0.00 3.51
119 120 4.444876 CCTTTGCAGGCTATATACCACACT 60.445 45.833 0.00 0.00 31.53 3.55
120 121 3.815401 CCTTTGCAGGCTATATACCACAC 59.185 47.826 0.00 0.00 31.53 3.82
121 122 3.714280 TCCTTTGCAGGCTATATACCACA 59.286 43.478 0.00 0.95 40.58 4.17
158 161 6.482308 ACTGTAGAGTTGACATGGTGTTTAAC 59.518 38.462 0.00 0.00 31.94 2.01
182 185 5.926542 TCTACTTTATTATGCTCGCCATGAC 59.073 40.000 0.00 0.00 35.34 3.06
183 186 5.926542 GTCTACTTTATTATGCTCGCCATGA 59.073 40.000 0.00 0.00 35.34 3.07
234 239 9.716507 CACCGGTTAGATGAAATTTTACATAAG 57.283 33.333 2.97 0.00 0.00 1.73
248 253 6.037786 ACATATATGGTCACCGGTTAGATG 57.962 41.667 16.96 10.36 0.00 2.90
269 274 2.687425 CCACCTCACAATGTTGTCAACA 59.313 45.455 20.28 20.28 46.94 3.33
298 303 5.754782 AGGTACTCATGGTATTGCATCAAA 58.245 37.500 0.00 0.00 32.56 2.69
313 318 5.105310 GCTTTCTTCATCACCTAGGTACTCA 60.105 44.000 15.80 0.00 41.75 3.41
325 330 2.844946 TGTGGTTCGCTTTCTTCATCA 58.155 42.857 0.00 0.00 0.00 3.07
337 342 3.118775 TGGTCCAGATAGATTGTGGTTCG 60.119 47.826 0.00 0.00 32.73 3.95
339 344 3.587061 TGTGGTCCAGATAGATTGTGGTT 59.413 43.478 0.00 0.00 32.73 3.67
352 357 0.604578 CCCAAATGCTTGTGGTCCAG 59.395 55.000 7.97 0.00 32.60 3.86
362 367 2.613129 AGAAAAGGAAGCCCAAATGCT 58.387 42.857 0.00 0.00 45.43 3.79
383 388 1.153329 CGTGTAATGGCGGCCCTTA 60.153 57.895 17.97 14.65 0.00 2.69
394 399 2.396590 AATTGACGGAGGCGTGTAAT 57.603 45.000 0.00 0.00 0.00 1.89
428 433 5.591877 CACTGGAAGAATTTCTCCTATTGGG 59.408 44.000 0.00 0.00 37.43 4.12
436 441 7.334858 AGGATAGAACACTGGAAGAATTTCTC 58.665 38.462 0.00 0.00 37.43 2.87
508 521 5.909477 TCTTTCGTAGGAAACACTCTGAAA 58.091 37.500 6.50 0.00 37.24 2.69
516 529 4.067972 ACTGCTTCTTTCGTAGGAAACA 57.932 40.909 6.50 3.24 37.24 2.83
517 530 6.535274 TTTACTGCTTCTTTCGTAGGAAAC 57.465 37.500 6.50 0.00 37.24 2.78
525 538 5.597813 ACTGTGATTTACTGCTTCTTTCG 57.402 39.130 0.00 0.00 0.00 3.46
526 539 6.374578 GGAACTGTGATTTACTGCTTCTTTC 58.625 40.000 0.00 0.00 0.00 2.62
536 549 5.783111 AGCAATTTGGGAACTGTGATTTAC 58.217 37.500 0.00 0.00 0.00 2.01
537 550 5.538053 TGAGCAATTTGGGAACTGTGATTTA 59.462 36.000 0.00 0.00 0.00 1.40
549 562 5.221382 CCCTAATTCAGATGAGCAATTTGGG 60.221 44.000 9.41 9.41 42.39 4.12
552 565 5.206587 AGCCCTAATTCAGATGAGCAATTT 58.793 37.500 0.00 0.00 0.00 1.82
555 568 3.939740 AGCCCTAATTCAGATGAGCAA 57.060 42.857 0.00 0.00 0.00 3.91
563 576 7.189512 CGTGAATAAAAGAAGCCCTAATTCAG 58.810 38.462 0.00 0.00 33.29 3.02
570 583 2.307686 TCCCGTGAATAAAAGAAGCCCT 59.692 45.455 0.00 0.00 0.00 5.19
571 584 2.718563 TCCCGTGAATAAAAGAAGCCC 58.281 47.619 0.00 0.00 0.00 5.19
572 585 4.983671 AATCCCGTGAATAAAAGAAGCC 57.016 40.909 0.00 0.00 0.00 4.35
573 586 8.751302 TTTAAAATCCCGTGAATAAAAGAAGC 57.249 30.769 0.00 0.00 0.00 3.86
575 588 9.198837 GCTTTTAAAATCCCGTGAATAAAAGAA 57.801 29.630 18.74 0.00 37.37 2.52
576 589 7.539366 CGCTTTTAAAATCCCGTGAATAAAAGA 59.461 33.333 18.74 0.00 37.37 2.52
577 590 7.662761 CGCTTTTAAAATCCCGTGAATAAAAG 58.337 34.615 14.06 14.06 37.72 2.27
578 591 6.089685 GCGCTTTTAAAATCCCGTGAATAAAA 59.910 34.615 0.00 0.00 0.00 1.52
579 592 5.573669 GCGCTTTTAAAATCCCGTGAATAAA 59.426 36.000 0.00 0.00 0.00 1.40
580 593 5.096849 GCGCTTTTAAAATCCCGTGAATAA 58.903 37.500 0.00 0.00 0.00 1.40
581 594 4.664188 GCGCTTTTAAAATCCCGTGAATA 58.336 39.130 0.00 0.00 0.00 1.75
582 595 3.507786 GCGCTTTTAAAATCCCGTGAAT 58.492 40.909 0.00 0.00 0.00 2.57
583 596 2.666069 CGCGCTTTTAAAATCCCGTGAA 60.666 45.455 17.21 0.00 0.00 3.18
584 597 1.135916 CGCGCTTTTAAAATCCCGTGA 60.136 47.619 17.21 0.00 0.00 4.35
585 598 1.255767 CGCGCTTTTAAAATCCCGTG 58.744 50.000 5.56 7.78 0.00 4.94
586 599 0.169451 CCGCGCTTTTAAAATCCCGT 59.831 50.000 5.56 0.00 0.00 5.28
587 600 0.524604 CCCGCGCTTTTAAAATCCCG 60.525 55.000 5.56 1.59 0.00 5.14
588 601 0.812549 TCCCGCGCTTTTAAAATCCC 59.187 50.000 5.56 0.00 0.00 3.85
589 602 2.640346 TTCCCGCGCTTTTAAAATCC 57.360 45.000 5.56 0.00 0.00 3.01
590 603 4.035909 TCCTATTCCCGCGCTTTTAAAATC 59.964 41.667 5.56 0.00 0.00 2.17
591 604 3.949113 TCCTATTCCCGCGCTTTTAAAAT 59.051 39.130 5.56 0.00 0.00 1.82
592 605 3.345414 TCCTATTCCCGCGCTTTTAAAA 58.655 40.909 5.56 0.00 0.00 1.52
593 606 2.988570 TCCTATTCCCGCGCTTTTAAA 58.011 42.857 5.56 0.00 0.00 1.52
594 607 2.695127 TCCTATTCCCGCGCTTTTAA 57.305 45.000 5.56 0.00 0.00 1.52
595 608 2.695127 TTCCTATTCCCGCGCTTTTA 57.305 45.000 5.56 0.00 0.00 1.52
596 609 1.828979 TTTCCTATTCCCGCGCTTTT 58.171 45.000 5.56 0.00 0.00 2.27
597 610 1.471287 GTTTTCCTATTCCCGCGCTTT 59.529 47.619 5.56 0.00 0.00 3.51
598 611 1.092348 GTTTTCCTATTCCCGCGCTT 58.908 50.000 5.56 0.00 0.00 4.68
599 612 0.035820 TGTTTTCCTATTCCCGCGCT 60.036 50.000 5.56 0.00 0.00 5.92
600 613 1.021968 ATGTTTTCCTATTCCCGCGC 58.978 50.000 0.00 0.00 0.00 6.86
601 614 2.806244 CCTATGTTTTCCTATTCCCGCG 59.194 50.000 0.00 0.00 0.00 6.46
602 615 2.552743 GCCTATGTTTTCCTATTCCCGC 59.447 50.000 0.00 0.00 0.00 6.13
603 616 3.815401 CAGCCTATGTTTTCCTATTCCCG 59.185 47.826 0.00 0.00 0.00 5.14
604 617 4.145052 CCAGCCTATGTTTTCCTATTCCC 58.855 47.826 0.00 0.00 0.00 3.97
605 618 4.141251 TCCCAGCCTATGTTTTCCTATTCC 60.141 45.833 0.00 0.00 0.00 3.01
606 619 5.048846 TCCCAGCCTATGTTTTCCTATTC 57.951 43.478 0.00 0.00 0.00 1.75
607 620 5.466127 TTCCCAGCCTATGTTTTCCTATT 57.534 39.130 0.00 0.00 0.00 1.73
608 621 5.103515 ACATTCCCAGCCTATGTTTTCCTAT 60.104 40.000 0.00 0.00 0.00 2.57
609 622 4.229582 ACATTCCCAGCCTATGTTTTCCTA 59.770 41.667 0.00 0.00 0.00 2.94
610 623 3.011708 ACATTCCCAGCCTATGTTTTCCT 59.988 43.478 0.00 0.00 0.00 3.36
611 624 3.365472 ACATTCCCAGCCTATGTTTTCC 58.635 45.455 0.00 0.00 0.00 3.13
612 625 4.016444 TGACATTCCCAGCCTATGTTTTC 58.984 43.478 0.00 0.00 32.94 2.29
613 626 4.046286 TGACATTCCCAGCCTATGTTTT 57.954 40.909 0.00 0.00 32.94 2.43
614 627 3.737559 TGACATTCCCAGCCTATGTTT 57.262 42.857 0.00 0.00 32.94 2.83
615 628 3.559069 CATGACATTCCCAGCCTATGTT 58.441 45.455 0.00 0.00 32.94 2.71
616 629 2.750807 GCATGACATTCCCAGCCTATGT 60.751 50.000 0.00 0.00 35.33 2.29
617 630 1.884579 GCATGACATTCCCAGCCTATG 59.115 52.381 0.00 0.00 0.00 2.23
618 631 1.779092 AGCATGACATTCCCAGCCTAT 59.221 47.619 0.00 0.00 0.00 2.57
619 632 1.141657 GAGCATGACATTCCCAGCCTA 59.858 52.381 0.00 0.00 0.00 3.93
620 633 0.106819 GAGCATGACATTCCCAGCCT 60.107 55.000 0.00 0.00 0.00 4.58
621 634 0.394762 TGAGCATGACATTCCCAGCC 60.395 55.000 0.00 0.00 0.00 4.85
622 635 1.607628 GATGAGCATGACATTCCCAGC 59.392 52.381 0.00 0.00 0.00 4.85
623 636 3.139850 GAGATGAGCATGACATTCCCAG 58.860 50.000 0.00 0.00 0.00 4.45
624 637 2.506644 TGAGATGAGCATGACATTCCCA 59.493 45.455 0.00 0.00 0.00 4.37
625 638 3.204306 TGAGATGAGCATGACATTCCC 57.796 47.619 0.00 0.00 0.00 3.97
626 639 5.064558 AGATTGAGATGAGCATGACATTCC 58.935 41.667 0.00 0.00 0.00 3.01
627 640 6.621316 AAGATTGAGATGAGCATGACATTC 57.379 37.500 0.00 3.44 0.00 2.67
628 641 7.052248 TGTAAGATTGAGATGAGCATGACATT 58.948 34.615 0.00 0.00 0.00 2.71
629 642 6.589135 TGTAAGATTGAGATGAGCATGACAT 58.411 36.000 0.00 0.61 0.00 3.06
630 643 5.981174 TGTAAGATTGAGATGAGCATGACA 58.019 37.500 0.00 0.00 0.00 3.58
631 644 6.279123 TCTGTAAGATTGAGATGAGCATGAC 58.721 40.000 0.00 0.00 38.67 3.06
632 645 6.475596 TCTGTAAGATTGAGATGAGCATGA 57.524 37.500 0.00 0.00 38.67 3.07
633 646 7.731882 ATTCTGTAAGATTGAGATGAGCATG 57.268 36.000 0.00 0.00 46.36 4.06
634 647 8.749026 AAATTCTGTAAGATTGAGATGAGCAT 57.251 30.769 0.00 0.00 46.36 3.79
635 648 8.571461 AAAATTCTGTAAGATTGAGATGAGCA 57.429 30.769 0.00 0.00 46.36 4.26
636 649 9.286946 CAAAAATTCTGTAAGATTGAGATGAGC 57.713 33.333 0.00 0.00 46.36 4.26
647 660 9.883142 AACCAAACAATCAAAAATTCTGTAAGA 57.117 25.926 0.00 0.00 44.68 2.10
648 661 9.919348 CAACCAAACAATCAAAAATTCTGTAAG 57.081 29.630 0.00 0.00 0.00 2.34
649 662 8.394121 GCAACCAAACAATCAAAAATTCTGTAA 58.606 29.630 0.00 0.00 0.00 2.41
650 663 7.550551 TGCAACCAAACAATCAAAAATTCTGTA 59.449 29.630 0.00 0.00 0.00 2.74
651 664 6.373774 TGCAACCAAACAATCAAAAATTCTGT 59.626 30.769 0.00 0.00 0.00 3.41
652 665 6.783162 TGCAACCAAACAATCAAAAATTCTG 58.217 32.000 0.00 0.00 0.00 3.02
653 666 6.998968 TGCAACCAAACAATCAAAAATTCT 57.001 29.167 0.00 0.00 0.00 2.40
654 667 7.416022 TGATGCAACCAAACAATCAAAAATTC 58.584 30.769 0.00 0.00 0.00 2.17
655 668 7.330900 TGATGCAACCAAACAATCAAAAATT 57.669 28.000 0.00 0.00 0.00 1.82
656 669 6.939132 TGATGCAACCAAACAATCAAAAAT 57.061 29.167 0.00 0.00 0.00 1.82
657 670 6.939132 ATGATGCAACCAAACAATCAAAAA 57.061 29.167 0.00 0.00 0.00 1.94
658 671 6.649973 CCTATGATGCAACCAAACAATCAAAA 59.350 34.615 0.00 0.00 0.00 2.44
659 672 6.014755 TCCTATGATGCAACCAAACAATCAAA 60.015 34.615 0.00 0.00 0.00 2.69
660 673 5.479724 TCCTATGATGCAACCAAACAATCAA 59.520 36.000 0.00 0.00 0.00 2.57
661 674 5.015515 TCCTATGATGCAACCAAACAATCA 58.984 37.500 0.00 0.00 0.00 2.57
662 675 5.581126 TCCTATGATGCAACCAAACAATC 57.419 39.130 0.00 0.00 0.00 2.67
663 676 5.999205 TTCCTATGATGCAACCAAACAAT 57.001 34.783 0.00 0.00 0.00 2.71
664 677 5.798125 TTTCCTATGATGCAACCAAACAA 57.202 34.783 0.00 0.00 0.00 2.83
665 678 5.798125 TTTTCCTATGATGCAACCAAACA 57.202 34.783 0.00 0.00 0.00 2.83
666 679 5.988561 TGTTTTTCCTATGATGCAACCAAAC 59.011 36.000 0.00 0.00 0.00 2.93
667 680 6.166984 TGTTTTTCCTATGATGCAACCAAA 57.833 33.333 0.00 0.00 0.00 3.28
668 681 5.798125 TGTTTTTCCTATGATGCAACCAA 57.202 34.783 0.00 0.00 0.00 3.67
669 682 5.798125 TTGTTTTTCCTATGATGCAACCA 57.202 34.783 0.00 0.00 0.00 3.67
670 683 6.454795 TCTTTGTTTTTCCTATGATGCAACC 58.545 36.000 0.00 0.00 0.00 3.77
671 684 7.945033 TTCTTTGTTTTTCCTATGATGCAAC 57.055 32.000 0.00 0.00 0.00 4.17
672 685 9.206870 GAATTCTTTGTTTTTCCTATGATGCAA 57.793 29.630 0.00 0.00 0.00 4.08
673 686 8.587608 AGAATTCTTTGTTTTTCCTATGATGCA 58.412 29.630 0.88 0.00 0.00 3.96
674 687 8.992835 AGAATTCTTTGTTTTTCCTATGATGC 57.007 30.769 0.88 0.00 0.00 3.91
677 690 9.677567 CGAAAGAATTCTTTGTTTTTCCTATGA 57.322 29.630 32.67 0.00 45.37 2.15
678 691 9.677567 TCGAAAGAATTCTTTGTTTTTCCTATG 57.322 29.630 32.67 9.12 45.37 2.23
697 710 4.127171 CCACTCAAAACCTCTTCGAAAGA 58.873 43.478 0.00 0.00 39.20 2.52
698 711 4.127171 TCCACTCAAAACCTCTTCGAAAG 58.873 43.478 0.00 0.00 0.00 2.62
699 712 4.145365 TCCACTCAAAACCTCTTCGAAA 57.855 40.909 0.00 0.00 0.00 3.46
700 713 3.830744 TCCACTCAAAACCTCTTCGAA 57.169 42.857 0.00 0.00 0.00 3.71
701 714 3.664107 CATCCACTCAAAACCTCTTCGA 58.336 45.455 0.00 0.00 0.00 3.71
702 715 2.160417 GCATCCACTCAAAACCTCTTCG 59.840 50.000 0.00 0.00 0.00 3.79
703 716 3.416156 AGCATCCACTCAAAACCTCTTC 58.584 45.455 0.00 0.00 0.00 2.87
704 717 3.515602 AGCATCCACTCAAAACCTCTT 57.484 42.857 0.00 0.00 0.00 2.85
705 718 4.851639 ATAGCATCCACTCAAAACCTCT 57.148 40.909 0.00 0.00 0.00 3.69
706 719 7.255277 GGATTTATAGCATCCACTCAAAACCTC 60.255 40.741 7.78 0.00 40.21 3.85
707 720 6.547510 GGATTTATAGCATCCACTCAAAACCT 59.452 38.462 7.78 0.00 40.21 3.50
708 721 6.239036 GGGATTTATAGCATCCACTCAAAACC 60.239 42.308 12.79 0.00 42.03 3.27
709 722 6.321181 TGGGATTTATAGCATCCACTCAAAAC 59.679 38.462 12.79 0.00 42.03 2.43
710 723 6.430864 TGGGATTTATAGCATCCACTCAAAA 58.569 36.000 12.79 0.00 42.03 2.44
711 724 6.012337 TGGGATTTATAGCATCCACTCAAA 57.988 37.500 12.79 0.00 42.03 2.69
712 725 5.645056 TGGGATTTATAGCATCCACTCAA 57.355 39.130 12.79 0.00 42.03 3.02
713 726 5.310331 TCATGGGATTTATAGCATCCACTCA 59.690 40.000 12.79 4.90 42.03 3.41
714 727 5.809001 TCATGGGATTTATAGCATCCACTC 58.191 41.667 12.79 0.54 42.03 3.51
715 728 5.848286 TCATGGGATTTATAGCATCCACT 57.152 39.130 12.79 0.46 42.03 4.00
716 729 6.899393 TTTCATGGGATTTATAGCATCCAC 57.101 37.500 12.79 5.51 42.03 4.02
717 730 7.911130 TTTTTCATGGGATTTATAGCATCCA 57.089 32.000 12.79 3.35 42.03 3.41
764 777 8.971073 CACAGGATTGAACCCTATAGAATTTTT 58.029 33.333 0.00 0.00 31.64 1.94
765 778 8.336235 TCACAGGATTGAACCCTATAGAATTTT 58.664 33.333 0.00 0.00 31.64 1.82
766 779 7.872138 TCACAGGATTGAACCCTATAGAATTT 58.128 34.615 0.00 0.00 31.64 1.82
767 780 7.451731 TCACAGGATTGAACCCTATAGAATT 57.548 36.000 0.00 0.00 31.64 2.17
768 781 7.451731 TTCACAGGATTGAACCCTATAGAAT 57.548 36.000 0.00 0.00 30.29 2.40
769 782 6.884472 TTCACAGGATTGAACCCTATAGAA 57.116 37.500 0.00 0.00 30.29 2.10
770 783 6.615316 TGATTCACAGGATTGAACCCTATAGA 59.385 38.462 0.00 0.00 38.31 1.98
771 784 6.830912 TGATTCACAGGATTGAACCCTATAG 58.169 40.000 0.00 0.00 38.31 1.31
772 785 6.823286 TGATTCACAGGATTGAACCCTATA 57.177 37.500 0.00 0.00 38.31 1.31
773 786 5.715439 TGATTCACAGGATTGAACCCTAT 57.285 39.130 0.00 0.00 38.31 2.57
774 787 5.512942 TTGATTCACAGGATTGAACCCTA 57.487 39.130 0.00 0.00 38.31 3.53
775 788 4.387026 TTGATTCACAGGATTGAACCCT 57.613 40.909 0.00 0.00 38.31 4.34
776 789 4.280677 TGTTTGATTCACAGGATTGAACCC 59.719 41.667 0.00 0.00 38.31 4.11
777 790 5.452078 TGTTTGATTCACAGGATTGAACC 57.548 39.130 0.00 0.00 38.31 3.62
778 791 5.691754 GGTTGTTTGATTCACAGGATTGAAC 59.308 40.000 0.00 0.00 38.31 3.18
779 792 5.362143 TGGTTGTTTGATTCACAGGATTGAA 59.638 36.000 0.00 0.00 39.79 2.69
780 793 4.892345 TGGTTGTTTGATTCACAGGATTGA 59.108 37.500 0.00 0.00 0.00 2.57
781 794 5.199024 TGGTTGTTTGATTCACAGGATTG 57.801 39.130 0.00 0.00 0.00 2.67
782 795 5.128499 TGTTGGTTGTTTGATTCACAGGATT 59.872 36.000 0.00 0.00 0.00 3.01
783 796 4.648762 TGTTGGTTGTTTGATTCACAGGAT 59.351 37.500 0.00 0.00 0.00 3.24
784 797 4.019858 TGTTGGTTGTTTGATTCACAGGA 58.980 39.130 0.00 0.00 0.00 3.86
785 798 4.383850 TGTTGGTTGTTTGATTCACAGG 57.616 40.909 0.00 0.00 0.00 4.00
786 799 6.041511 TCAATGTTGGTTGTTTGATTCACAG 58.958 36.000 0.00 0.00 0.00 3.66
787 800 5.970592 TCAATGTTGGTTGTTTGATTCACA 58.029 33.333 0.00 0.00 0.00 3.58
788 801 6.900568 TTCAATGTTGGTTGTTTGATTCAC 57.099 33.333 0.00 0.00 0.00 3.18
789 802 7.912056 TTTTCAATGTTGGTTGTTTGATTCA 57.088 28.000 0.00 0.00 0.00 2.57
836 849 9.534565 GGAGGATTAGAAATTTTAGGAATTTGC 57.465 33.333 1.82 0.00 30.68 3.68
843 856 9.317936 GCATTTTGGAGGATTAGAAATTTTAGG 57.682 33.333 0.00 0.00 0.00 2.69
844 857 9.317936 GGCATTTTGGAGGATTAGAAATTTTAG 57.682 33.333 0.00 0.00 0.00 1.85
845 858 9.045745 AGGCATTTTGGAGGATTAGAAATTTTA 57.954 29.630 0.00 0.00 0.00 1.52
846 859 7.921304 AGGCATTTTGGAGGATTAGAAATTTT 58.079 30.769 0.00 0.00 0.00 1.82
847 860 7.500629 AGGCATTTTGGAGGATTAGAAATTT 57.499 32.000 0.00 0.00 0.00 1.82
848 861 8.645110 CATAGGCATTTTGGAGGATTAGAAATT 58.355 33.333 0.00 0.00 0.00 1.82
849 862 8.006564 TCATAGGCATTTTGGAGGATTAGAAAT 58.993 33.333 0.00 0.00 0.00 2.17
850 863 7.353525 TCATAGGCATTTTGGAGGATTAGAAA 58.646 34.615 0.00 0.00 0.00 2.52
851 864 6.910191 TCATAGGCATTTTGGAGGATTAGAA 58.090 36.000 0.00 0.00 0.00 2.10
852 865 6.514012 TCATAGGCATTTTGGAGGATTAGA 57.486 37.500 0.00 0.00 0.00 2.10
853 866 7.587037 TTTCATAGGCATTTTGGAGGATTAG 57.413 36.000 0.00 0.00 0.00 1.73
854 867 7.969690 TTTTCATAGGCATTTTGGAGGATTA 57.030 32.000 0.00 0.00 0.00 1.75
855 868 6.872585 TTTTCATAGGCATTTTGGAGGATT 57.127 33.333 0.00 0.00 0.00 3.01
856 869 7.786464 AGTATTTTCATAGGCATTTTGGAGGAT 59.214 33.333 0.00 0.00 0.00 3.24
857 870 7.125391 AGTATTTTCATAGGCATTTTGGAGGA 58.875 34.615 0.00 0.00 0.00 3.71
858 871 7.352079 AGTATTTTCATAGGCATTTTGGAGG 57.648 36.000 0.00 0.00 0.00 4.30
859 872 7.707893 CCAAGTATTTTCATAGGCATTTTGGAG 59.292 37.037 0.00 0.00 33.74 3.86
860 873 7.398618 TCCAAGTATTTTCATAGGCATTTTGGA 59.601 33.333 0.00 0.00 37.45 3.53
861 874 7.555087 TCCAAGTATTTTCATAGGCATTTTGG 58.445 34.615 0.00 0.00 33.31 3.28
862 875 9.603921 ATTCCAAGTATTTTCATAGGCATTTTG 57.396 29.630 0.00 0.00 0.00 2.44
863 876 9.822185 GATTCCAAGTATTTTCATAGGCATTTT 57.178 29.630 0.00 0.00 0.00 1.82
864 877 8.980596 TGATTCCAAGTATTTTCATAGGCATTT 58.019 29.630 0.00 0.00 0.00 2.32
865 878 8.537728 TGATTCCAAGTATTTTCATAGGCATT 57.462 30.769 0.00 0.00 0.00 3.56
866 879 8.537728 TTGATTCCAAGTATTTTCATAGGCAT 57.462 30.769 0.00 0.00 0.00 4.40
867 880 7.953005 TTGATTCCAAGTATTTTCATAGGCA 57.047 32.000 0.00 0.00 0.00 4.75
868 881 7.922811 CCTTTGATTCCAAGTATTTTCATAGGC 59.077 37.037 0.00 0.00 33.23 3.93
869 882 9.189156 TCCTTTGATTCCAAGTATTTTCATAGG 57.811 33.333 0.00 0.00 35.15 2.57
871 884 8.686334 GCTCCTTTGATTCCAAGTATTTTCATA 58.314 33.333 0.00 0.00 33.23 2.15
872 885 7.364144 GGCTCCTTTGATTCCAAGTATTTTCAT 60.364 37.037 0.00 0.00 33.23 2.57
873 886 6.071391 GGCTCCTTTGATTCCAAGTATTTTCA 60.071 38.462 0.00 0.00 33.23 2.69
874 887 6.333416 GGCTCCTTTGATTCCAAGTATTTTC 58.667 40.000 0.00 0.00 33.23 2.29
875 888 5.187772 GGGCTCCTTTGATTCCAAGTATTTT 59.812 40.000 0.00 0.00 33.23 1.82
876 889 4.711846 GGGCTCCTTTGATTCCAAGTATTT 59.288 41.667 0.00 0.00 33.23 1.40
877 890 4.017130 AGGGCTCCTTTGATTCCAAGTATT 60.017 41.667 0.00 0.00 33.23 1.89
878 891 3.529319 AGGGCTCCTTTGATTCCAAGTAT 59.471 43.478 0.00 0.00 33.23 2.12
879 892 2.919602 AGGGCTCCTTTGATTCCAAGTA 59.080 45.455 0.00 0.00 33.23 2.24
880 893 1.713078 AGGGCTCCTTTGATTCCAAGT 59.287 47.619 0.00 0.00 33.23 3.16
881 894 2.521547 AGGGCTCCTTTGATTCCAAG 57.478 50.000 0.00 0.00 33.23 3.61
882 895 2.999185 AAGGGCTCCTTTGATTCCAA 57.001 45.000 0.99 0.00 41.69 3.53
883 896 4.230502 AGATTAAGGGCTCCTTTGATTCCA 59.769 41.667 11.15 0.00 41.69 3.53
884 897 4.582240 CAGATTAAGGGCTCCTTTGATTCC 59.418 45.833 11.15 0.00 41.69 3.01
885 898 4.037327 GCAGATTAAGGGCTCCTTTGATTC 59.963 45.833 11.15 5.05 41.69 2.52
886 899 3.956848 GCAGATTAAGGGCTCCTTTGATT 59.043 43.478 11.15 0.00 41.69 2.57
887 900 3.203934 AGCAGATTAAGGGCTCCTTTGAT 59.796 43.478 11.15 6.91 41.69 2.57
888 901 2.578021 AGCAGATTAAGGGCTCCTTTGA 59.422 45.455 11.15 2.95 41.69 2.69
889 902 3.010200 AGCAGATTAAGGGCTCCTTTG 57.990 47.619 11.15 5.67 41.69 2.77
890 903 3.010584 TGAAGCAGATTAAGGGCTCCTTT 59.989 43.478 11.15 0.00 41.69 3.11
891 904 2.578021 TGAAGCAGATTAAGGGCTCCTT 59.422 45.455 10.76 10.76 46.63 3.36
892 905 2.092699 GTGAAGCAGATTAAGGGCTCCT 60.093 50.000 0.00 0.00 36.76 3.69
893 906 2.092699 AGTGAAGCAGATTAAGGGCTCC 60.093 50.000 0.00 0.00 36.76 4.70
894 907 3.274095 AGTGAAGCAGATTAAGGGCTC 57.726 47.619 0.00 0.00 36.76 4.70
895 908 3.728385 AAGTGAAGCAGATTAAGGGCT 57.272 42.857 0.00 0.00 40.14 5.19
896 909 3.674410 GCAAAGTGAAGCAGATTAAGGGC 60.674 47.826 0.00 0.00 0.00 5.19
897 910 3.760684 AGCAAAGTGAAGCAGATTAAGGG 59.239 43.478 0.00 0.00 0.00 3.95
898 911 6.500684 TTAGCAAAGTGAAGCAGATTAAGG 57.499 37.500 0.00 0.00 0.00 2.69
899 912 7.695618 GTGATTAGCAAAGTGAAGCAGATTAAG 59.304 37.037 0.00 0.00 0.00 1.85
900 913 7.174772 TGTGATTAGCAAAGTGAAGCAGATTAA 59.825 33.333 0.00 0.00 0.00 1.40
901 914 6.654582 TGTGATTAGCAAAGTGAAGCAGATTA 59.345 34.615 0.00 0.00 0.00 1.75
902 915 5.474532 TGTGATTAGCAAAGTGAAGCAGATT 59.525 36.000 0.00 0.00 0.00 2.40
903 916 5.005740 TGTGATTAGCAAAGTGAAGCAGAT 58.994 37.500 0.00 0.00 0.00 2.90
904 917 4.388485 TGTGATTAGCAAAGTGAAGCAGA 58.612 39.130 0.00 0.00 0.00 4.26
905 918 4.754372 TGTGATTAGCAAAGTGAAGCAG 57.246 40.909 0.00 0.00 0.00 4.24
906 919 5.241285 TGAATGTGATTAGCAAAGTGAAGCA 59.759 36.000 0.00 0.00 0.00 3.91
907 920 5.570589 GTGAATGTGATTAGCAAAGTGAAGC 59.429 40.000 0.00 0.00 0.00 3.86
908 921 6.671190 TGTGAATGTGATTAGCAAAGTGAAG 58.329 36.000 0.00 0.00 0.00 3.02
909 922 6.631971 TGTGAATGTGATTAGCAAAGTGAA 57.368 33.333 0.00 0.00 0.00 3.18
910 923 6.039159 TGTTGTGAATGTGATTAGCAAAGTGA 59.961 34.615 0.00 0.00 0.00 3.41
911 924 6.207928 TGTTGTGAATGTGATTAGCAAAGTG 58.792 36.000 0.00 0.00 0.00 3.16
912 925 6.389830 TGTTGTGAATGTGATTAGCAAAGT 57.610 33.333 0.00 0.00 0.00 2.66
913 926 6.696583 TGTTGTTGTGAATGTGATTAGCAAAG 59.303 34.615 0.00 0.00 0.00 2.77
914 927 6.475076 GTGTTGTTGTGAATGTGATTAGCAAA 59.525 34.615 0.00 0.00 0.00 3.68
915 928 5.976534 GTGTTGTTGTGAATGTGATTAGCAA 59.023 36.000 0.00 0.00 0.00 3.91
916 929 5.067023 TGTGTTGTTGTGAATGTGATTAGCA 59.933 36.000 0.00 0.00 0.00 3.49
917 930 5.518812 TGTGTTGTTGTGAATGTGATTAGC 58.481 37.500 0.00 0.00 0.00 3.09
918 931 7.113825 CACATGTGTTGTTGTGAATGTGATTAG 59.886 37.037 18.03 0.00 44.81 1.73
919 932 6.916932 CACATGTGTTGTTGTGAATGTGATTA 59.083 34.615 18.03 0.00 44.81 1.75
920 933 5.749588 CACATGTGTTGTTGTGAATGTGATT 59.250 36.000 18.03 0.00 44.81 2.57
921 934 5.283294 CACATGTGTTGTTGTGAATGTGAT 58.717 37.500 18.03 0.00 44.81 3.06
922 935 4.670347 CACATGTGTTGTTGTGAATGTGA 58.330 39.130 18.03 0.00 44.81 3.58
923 936 3.243410 GCACATGTGTTGTTGTGAATGTG 59.757 43.478 26.01 8.79 44.74 3.21
924 937 3.119209 TGCACATGTGTTGTTGTGAATGT 60.119 39.130 26.01 0.00 44.74 2.71
925 938 3.445857 TGCACATGTGTTGTTGTGAATG 58.554 40.909 26.01 0.00 44.74 2.67
926 939 3.797451 TGCACATGTGTTGTTGTGAAT 57.203 38.095 26.01 0.00 44.74 2.57
927 940 3.582714 TTGCACATGTGTTGTTGTGAA 57.417 38.095 26.01 5.00 44.74 3.18
934 947 2.293955 TCTGACCATTGCACATGTGTTG 59.706 45.455 26.01 19.52 0.00 3.33
938 951 2.294233 GTGTTCTGACCATTGCACATGT 59.706 45.455 0.00 0.00 0.00 3.21
955 968 6.513806 TGCAAATATGTCTGCTATTGTGTT 57.486 33.333 6.34 0.00 39.38 3.32
958 971 6.947644 TGATGCAAATATGTCTGCTATTGT 57.052 33.333 0.00 0.00 39.38 2.71
959 972 7.197703 TGTTGATGCAAATATGTCTGCTATTG 58.802 34.615 0.00 0.00 39.38 1.90
961 974 6.947644 TGTTGATGCAAATATGTCTGCTAT 57.052 33.333 0.00 0.34 39.38 2.97
962 975 6.756299 TTGTTGATGCAAATATGTCTGCTA 57.244 33.333 0.00 0.00 39.38 3.49
964 977 6.145858 TGTTTTGTTGATGCAAATATGTCTGC 59.854 34.615 0.00 0.00 38.05 4.26
965 978 7.640616 TGTTTTGTTGATGCAAATATGTCTG 57.359 32.000 0.00 0.00 38.05 3.51
966 979 8.836268 ATTGTTTTGTTGATGCAAATATGTCT 57.164 26.923 0.00 0.00 38.05 3.41
975 991 5.630264 CGATTCAGATTGTTTTGTTGATGCA 59.370 36.000 0.00 0.00 0.00 3.96
976 992 5.858049 TCGATTCAGATTGTTTTGTTGATGC 59.142 36.000 0.00 0.00 0.00 3.91
991 1007 4.039245 GGGTGTAGATTCCATCGATTCAGA 59.961 45.833 0.00 0.00 0.00 3.27
995 1011 4.227197 AGAGGGTGTAGATTCCATCGATT 58.773 43.478 0.00 0.00 39.17 3.34
1003 1019 3.895232 TGCAGAAGAGGGTGTAGATTC 57.105 47.619 0.00 0.00 0.00 2.52
1017 1033 3.052082 GCCTCGCAGCTTGCAGAA 61.052 61.111 8.52 0.00 45.36 3.02
1043 1059 1.956043 GGCATTGTTGGCGTTCTGA 59.044 52.632 0.00 0.00 38.79 3.27
1058 1074 2.892852 CTGAAACCTGAATTTGGAGGCA 59.107 45.455 5.58 0.79 31.90 4.75
1083 1099 1.137825 GGAGTTCGTCGCTGGAGAG 59.862 63.158 0.00 0.00 0.00 3.20
1167 1183 2.258591 GCGAGCACGAGGAAGTCA 59.741 61.111 8.01 0.00 42.66 3.41
1169 1185 3.362797 TCGCGAGCACGAGGAAGT 61.363 61.111 3.71 0.00 42.66 3.01
1224 1240 0.108186 TCGGCAACCTAGTCATGCTG 60.108 55.000 12.04 12.04 45.61 4.41
1242 1258 1.733399 GCTGGAACCAGACGACGTC 60.733 63.158 22.96 20.25 46.30 4.34
1368 1384 2.793790 GCGTGCTCTCAATCTCATACTG 59.206 50.000 0.00 0.00 0.00 2.74
1370 1386 2.537625 GTGCGTGCTCTCAATCTCATAC 59.462 50.000 0.00 0.00 0.00 2.39
1380 1396 0.093705 GACAAATCGTGCGTGCTCTC 59.906 55.000 0.00 0.00 0.00 3.20
1424 1440 1.153568 GTCGAGCACTATGGCTGCA 60.154 57.895 0.50 0.00 45.99 4.41
1462 1478 3.554692 CGACCGCATGAAGGACGC 61.555 66.667 16.05 5.28 39.62 5.19
1464 1480 0.389948 ACTTCGACCGCATGAAGGAC 60.390 55.000 13.65 7.24 44.59 3.85
1487 1503 3.003173 TCCTGGACGAAGGGCTGG 61.003 66.667 0.00 0.00 37.96 4.85
1668 1684 0.172803 AGCTGTTCGACGGTATGGAC 59.827 55.000 0.00 0.00 0.00 4.02
1714 1730 1.536072 GCTGATGGAGATGTACGCGAA 60.536 52.381 15.93 0.00 0.00 4.70
1716 1732 1.271446 CGCTGATGGAGATGTACGCG 61.271 60.000 3.53 3.53 0.00 6.01
1851 1867 2.355363 TTTGAGCCGGACGACGTG 60.355 61.111 5.05 0.00 42.24 4.49
1863 1879 3.056393 TGATGCAAATGGAAGGCTTTGAG 60.056 43.478 0.00 0.00 34.93 3.02
1884 1900 3.110178 GTCGAGGCGTTCCGGTTG 61.110 66.667 0.00 0.00 37.47 3.77
1885 1901 4.712425 CGTCGAGGCGTTCCGGTT 62.712 66.667 0.00 0.00 37.47 4.44
1908 1924 4.821589 GCAGCGGGGGACTTCTCG 62.822 72.222 0.00 0.00 0.00 4.04
1943 1959 1.522668 CATCGTTTCCTGGACTGCAA 58.477 50.000 0.00 0.00 0.00 4.08
1962 1978 0.908198 ACTCCATGCCTGAGAAGACC 59.092 55.000 4.68 0.00 33.95 3.85
1971 1987 2.017049 GCGTTATTCAACTCCATGCCT 58.983 47.619 0.00 0.00 32.09 4.75
1988 2004 2.579684 GATGAGGAAAGCGAGGGCGT 62.580 60.000 0.00 0.00 46.35 5.68
1989 2005 1.884926 GATGAGGAAAGCGAGGGCG 60.885 63.158 0.00 0.00 46.35 6.13
2022 2038 0.872881 ACACGGTTATATCGGCGCAC 60.873 55.000 10.83 0.00 0.00 5.34
2037 2053 1.227999 ATGCGGTCACTTGGAACACG 61.228 55.000 0.00 0.00 39.29 4.49
2264 2280 0.953960 ATTTCCGTCGACTGGTTGCC 60.954 55.000 20.62 0.00 0.00 4.52
2265 2281 0.165944 CATTTCCGTCGACTGGTTGC 59.834 55.000 20.62 0.00 0.00 4.17
2269 2285 2.106683 GCCCATTTCCGTCGACTGG 61.107 63.158 14.70 16.06 0.00 4.00
2325 2341 2.669569 CAGAACCACCTGCACCGG 60.670 66.667 0.00 0.00 0.00 5.28
2389 2405 4.947147 GGTGTTCGCCCAGGTGCA 62.947 66.667 0.00 0.00 0.00 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.