>input_sequence_80399
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-------------------------------------------------------ATGGAATCTACACCCTCTTCTGCAA
GCTGCGAGGCCAGGATGTTCAGAACGCCAACAATGCCTCCAAATTCAGGTTTCAGGTCCTCTCCAGCGACGAACTCCTGC
ACCACGTTGTCCACCTCGATCAGGCTGCACCCCGGGGTCTTCTTCATGCTCCTGCTCCTTATTGACTTCCTCGTGCTCGC
GACCTCGCTCCACCGCCTCGCCGCGGCGTACACGTTGGCCAGCATGACTAGGTTGCCGACGTCGTCTGGTTCCAGCGCGA
CGAGCCGCTCGGCAGCCACCACGGCCGTGTCGACATCGCCGTGGCTTCGGCATGCGCTGAGCATTGAGCCCCATATCTTC
GCATCGGCAGGAAATGGCATGTCCAGTATGAGATTGAGAGCACGCACGATTTGTCCTGACCGACCGAGGAGGTCGACGAT
GCAGCCATAG----------------------------------------------------------------------
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>chr1A_1_TraesCS1A01G274700
GACAATGTCGTCATCTATGTTGGGTGAAAACATCCTAACCGTCTGCTCCAAATGCATACACACCGCAACAAACATCAGCC
GATGTTCCAATCATTGTACACAAGACCACTTCTGGAGACAGTG--TGGTATATAGCCTGCAAAGGAGATGAATTTTAACC
GTTAAACACCATGTCAACTCTACAGT--CATGGCGAGCATAATAAAGTAGACGATCACATCCTTATAAATGTACTAAACT
TATGTAAAATTTCATCTAACCGGTGACCATATATGTTGACAACATTGTGAGGTGGATATAAGTTTGATGCAATACCATGA
GTACCTAGGTGATGAAGAAAGCGAACCACAATCTATCTGGACCACAAGCATTTGGGCTTCCTTTTCTTAAGGGCCGCCAT
TACACGCCTCCGTCAATTTTTTAGTTGTTTCTCCCAATAGGAGAAATTCTTCCAGTGTTCTATCCTTTTTTTTCTTTAGG
ATTTGCGGAGTTCTAACATCTGAACA--------ACAGATTTTCAGAGTGTTTCCTACGAAAGAAGCAGTAAATCACAGT
TCCCAAATTGCTCATCTGAATTAGGGCTTCTTTTATTCACGGGATTTTAAAAGCGCGGGAATAGGAAAACATAGGCTGGG
AATGTCATGCTCATCTCAATCTTACAGAATTTTTGATTGTTTGGTTGCATCATAGGAAAAACAAAGAATTCTTTCGAAGA
GGTTTTGAGTGGATGCTATAAATCCCATGAAAAAAAGTACAAAGAAATCCTTAGAAAAAAATTCTATAGGGTTCAATCCT
GTGAATCAAACAACCAACATTGAAAAAAATCCGAATTTTTTTTTGAGAGCAAATTCCTAAAATTTCTAATCCTCCAAAAT
GCCTATGAAAATACTTGGAATCAAAGGAGCCCTTAATCTGCTTCACTTTGCTAATCACATTCACAACAACACATGTGCAA
TGGTCAGAACACAATAGCA---GACATATTTGCATCAACAAAACAATCTGAATCGATGGAATCTACACCCTCTTCTGCAA
GCTGCGAGGCCAGGATGTTCAGAACGCCAACAATGCCTCCAAATTCAGGTTTCAGGTCCTCTCCAGCGACGAACTCCTGC
ACCACGTTGTCCACCTCGATCAGGCTGCACCCCGGGGTCTTCTTCATGCTCCTGCTCCTTATTGACTTCCTCGTGCTCGC
GACCTCGCTCCACCGCCTCGCCGCGGCGTACACGTTGGCCAGCATGACTAGGTTGCCGACGTCGTCTGGTTCCAGCGCGA
CGAGCCGCTCGGCAGCCACCACGGCCGTGTCGACATCGCCGTGGCTTCGGCATGCGCTGAGCATTGAGCCCCATATCTTC
GCATCGGCAGGAAATGGCATGTCCAGTATGAGATTGAGAGCACGCACGATTTGTCCTGACCGACCGAGGAGGTCGACGAT
GCAGCCATAGTGCTCGACGCCAGGTTCGATGCCATAAGCGTCCTTCATGCGGTCGAAGTAGTCCAGCCCTTCGTCCAGGA
GCCCGGCGTGGGAGCAGGCTGACAGGAGCCCGACAAATGTGATGCCGTTGGGCCTCACCTTCCCCTCCCTCTCCATATCC
ACGAACAACAGGACCGCCTCCTTTGCTCTCCCATGCGCCGCAAGGCCGCTGATCATCGTGCTCCACGAGATGACATCCTT
CTCGTCCATACCGTCGAACAGCTGGAGTGCTTGGTCGATGCATCCGCACTTCGCGTACATCTCCATCAGCGCATTGCATA
CGTATGTCTTGCGCAGCATTCGGTGCCTGTTACAGTAGGCGTATATCCACCTGCCTAGCTCCAGGGCTCCGAGCTGGGCG
CACGCCGGCAACACCGCGACGATGCTCACGTCGTCCGGCTCAAAGCCTTCCATTTGCATCAACCGGAACGCCTCGACGGC
GCCCGAGAAGTCCCCCGCTGCCGTGTACCCGGACACCATTGCAGTCCAGGAAACGATGGTCTTCTCAGGCATGGAGTTGA
ATAACGCCCTCGCTTTCCTCATCTGACCCAGCCTCGCGTGCGCCGATATAACCGTGTTCCAAGTGACCGCATCCCTCTCC
TGCATTCCGTCGAACACCTTGCGCGCGAGCGACAGATCGCCGGCGCGCGTGTACATCTCGATCATGGAGTTCTCCACGAC
GGCGTTGCACTCGCACCCGGACCTCACCACGTGCGCGTGCACCTGCTTGCCCAGTTCGAGGGCCGCCAGGCCGCCGCAAG
CCTTGAGCAGGAACGGGTACGTGAACCGGTCGCCGCCGGGGCAACCAGTCGACGGAAATGGGCGGCACCTCAGCATGCGA
ACGTACACCGCGACCGCCTCCCGGTGCAGGTGGTTCTGGGCGTAGGCCTTGATCATGGCGTTGTGCAGGTGTAGGTTGGG
CTCGTGCACCTGGGCGAACACCCGCGCGGCGTGCGCGGTGCGGCCGTGGG
>chr1D_1
GACAATGTCGTCATCTATGTTGGGTAAAAACATCCTGACCGTCTGCTCCAAATGCGTACACACCGCAATAAACAGTGGCC
GATGTTCCAGTCGTTATACTACATAAGACCATGTCCAACGTAGGCTGGTATATAGCCTGCAAAGGAGATGAATTTTAACC
ATTAAACACCATGTCAACTCTACATAGCCATGGCGAGCATAATAAAGTAGACGACCGCATCCATATAAATG-ACTAAAGT
TATGTAAAATTTGATCTAACCAGTGACCATATAAGTTGACAACATTGTGAGGTGGATATAAGATTGATGCAATACCACGA
GTACCTAGGCGATGAAGAAAGTGGACCACAATCTATTTGGACTACACGCATTTGGGCTTCCTTTTCTAAAGGGCCGCCGT
TACACGCCTCCATCAATTTTTGAGTTGTTTCTTCCAATAGCAGAAATTCTTCTAGAGTTCTAAC--TTTTTTTCTTTAGG
ATTTGCGGAGTTCTAACATCTGAACACTCAACAGACAGATGTTCAGAGAATTTCCTATTAAAGAAGCAACAAATCACAGT
TACCGAACTGCTCATTTGAATT----------------------------------------------------------
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>chr1B_929
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------------------------------------------------------------TCACAATAACGCATGTGCAA
TGGTCAGCACCGATCAATTGTGGACATATTAACATCAACAAAACAACCTGGATCGATGAAATCTACACCCTCCTCTGCAA
GCTGCGAGGCCAGGATGTCCAGAACGCCAACAAGGCCTCCAAATTCAGGTTTCAGGTCTTCTCCAGCGACGAACTCCTGC
ACCACGTTGTCCACCTCGATCAGGCTGCACCCCGGGGTCTTCTTCATGCTCCTGCTCCTTATCGTCTTCCTCGTGCTTGC
AACCTCGCTCCACTGCCTCGCCGCGGCGTACACGTTGGCTAGCATGACGAGGTTGCCAACGTCGTCTGGTTCCAGTGCGA
CAAGCCGCTCGGCAGCAACCACGGCCGTGTCGACATCTCCGTGGCTTCGGCATGCGCTGAGCATTGAGCCCCATATCTTC
GCATCGGCAGGAACTGGCATGTCTACTATGAGATTCAGAGCACGCACGATTTGTCCTGACCGGCCGAGGAGGTCGACGAC
GCAGCCATAGTGCTCGACGCCAGGTTCGATGCCATAAACTTCCTTCATGCGGTCGAAGTAGTTCAGCCCTTCGTCCAGGA
GCCCGGCGTGGGAGCAGGCTGACAGGAGCCCGACGAATGTGATGCCGTTGGGCCTCACCTTCCCCTCCCTCTCCATATCC
ACGAACAACAGGACCGCCTCCTTTGCTCTCCCATGCGCCGCAAGGCCGTTGATCATCGTGCTCCATGAGATGACATCCTT
CTCCTCCATACCGTCGAACAGCTGGAGTGCTTGGTCGATGCATCCGCACCTTGCGTACATCTCCATCAGTGCATTGCATA
CGTATGTCTCGCGCAGCATTCTGTGCCTGTTACAGTAGGCGTATATCCACCTGCCTAGCTCCAGGGCTCCCAGTTGGGCA
CACGCCGGCAACACCGCGACGATGCTTACGTCGTCCGGTTCAAAGCCTTCCATTTGCATTGACTGGAACGCCTCGACGGC
GCCAGAGAAGTCCCCCGCTGTCGTGTACCCGGACACCAGTGCAGTCCAGGAAACGATCGTCTTCTCCGGCATGGAGTTGA
ATAGTGCCCTCGCTTTCCTCATCTGACCCAGCCTCGCATGCGCCGATATAACAGTGTTCCAAGTGACCGCATCCCTCTCC
TGCATTCCGTCGAACACCTTGCGGGCGAGCGACAGATCGCCGGCGCGCGTGTACATCTCGATCATGGAGTTCTGCACGAC
GGCGTTGCACTCGCACCCGGACCTCACCACGTGAGCGTGCACCTGCTTGCCCAGTCCGAGCGCCGCCAGGCCGCCGCAAG
CCTTGAGCAGGAACGGGTACGTGAACCGGTCGCCGGCGGCACAAGCAGTCGACGGAAATGGGCGGCACCTCAGCATGCGA
ATGTACACCGCGACCGCCTCGCGGTGCAGGTGGTTCTGGGCGTAGGCCTTGATCATGGCGTTGTGCAGGTGTAGGTTGGG
CTCGCGCACCTGGTCGAACACCCGCGCGGCGTGTGCGGTGCGGCCGTGGG
>SNPs
-------------------------S----------S------------------S------------S-----SSS---
---------S--S--S---SSS-S-SS--SSSSSSSS--SSS--------------------------------------
S-----------------------SS----------------------------S-S-----S--------S------S-
------------S--------S-----------S----------------------------S--------------S--
---------S-----------S-S------------S-----S---S--------------------S----------S-
-----------S---------S----------S-------S-----------S--S------S-SS--------------
----------------------------------------S-------SS-------SS---------SS----------
-S--S--S-------S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S---S---------
-------S--SS-SS-SSS-----------SS--------------S---S-------S-------------S-------
------------------S--------------S------------------------S---------------------
--------------------------------------------------------------S-S------------S--
S------------S-------------------------S--------S--------S-----------------S----
-S--------------S--------------------S------------------------------------------
-------------S---------S-S---------S--------------------------S----------------S
-------------------------------------S-S----------------------S-----------------
----------------------------------S---------------------------------------------
------------------------------------------------S----------------S--------------
---S---------------------------------------------S-S-----------------S----------
---------S-----------S------------------------------------------------S--S-----S
--------------------------S-----------S--------------------SS--S----------------
---S----------------S-----------------S------------------S--------S-------------
---SS--------------------------------S--------------S---------------------------
-----------------------S-------------------------------------------------S------
---------------------------------S---------------------S----S-------------------
-----------------------------------S---SS---S-----------------------------------
-S------------------S-----------------------------------------------------------
----S--------S-------------------S----------------
>forward_631
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---------------------------------------------------AGCGCGGGAATAGGAAAACA---------
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>reverse_2281
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----------------------------------------GCAACCAGTCGACGGAAATG--------------------
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