Multiple sequence alignment - TraesCS1A01G270500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G270500 chr1A 100.000 3030 0 0 1 3030 464793523 464796552 0.000000e+00 5596.0
1 TraesCS1A01G270500 chr1A 100.000 692 0 0 3337 4028 464796859 464797550 0.000000e+00 1279.0
2 TraesCS1A01G270500 chr1A 93.258 89 6 0 3381 3469 563757768 563757856 9.080000e-27 132.0
3 TraesCS1A01G270500 chr1D 90.524 1889 102 34 1135 3012 365540236 365542058 0.000000e+00 2425.0
4 TraesCS1A01G270500 chr1D 93.214 560 20 3 3481 4026 365542188 365542743 0.000000e+00 808.0
5 TraesCS1A01G270500 chr1D 87.006 354 19 10 7 352 365536790 365537124 1.370000e-99 374.0
6 TraesCS1A01G270500 chr1D 91.406 128 6 2 368 495 365537304 365537426 1.920000e-38 171.0
7 TraesCS1A01G270500 chr1D 87.500 96 3 3 1044 1130 365540108 365540203 7.120000e-18 102.0
8 TraesCS1A01G270500 chr1B 88.370 1221 72 24 1044 2255 489198568 489199727 0.000000e+00 1404.0
9 TraesCS1A01G270500 chr1B 92.683 533 32 2 2239 2770 489199889 489200415 0.000000e+00 761.0
10 TraesCS1A01G270500 chr1B 91.927 545 26 8 1 528 489134065 489134608 0.000000e+00 747.0
11 TraesCS1A01G270500 chr1B 96.591 440 15 0 3587 4026 489201313 489201752 0.000000e+00 730.0
12 TraesCS1A01G270500 chr1B 96.347 219 5 1 2794 3012 489200410 489200625 1.380000e-94 357.0
13 TraesCS1A01G270500 chr1B 78.133 407 74 8 647 1043 551184700 551185101 1.120000e-60 244.0
14 TraesCS1A01G270500 chr1B 79.339 363 63 10 667 1024 635436780 635437135 1.120000e-60 244.0
15 TraesCS1A01G270500 chr1B 95.745 47 2 0 3343 3389 489200830 489200876 4.320000e-10 76.8
16 TraesCS1A01G270500 chrUn 80.526 380 65 8 649 1024 286248458 286248832 2.370000e-72 283.0
17 TraesCS1A01G270500 chrUn 80.526 380 65 8 649 1024 291302315 291301941 2.370000e-72 283.0
18 TraesCS1A01G270500 chrUn 80.157 383 65 7 647 1024 2576669 2576293 3.970000e-70 276.0
19 TraesCS1A01G270500 chr3B 80.526 380 65 8 649 1024 5451529 5451903 2.370000e-72 283.0
20 TraesCS1A01G270500 chr3B 79.896 383 66 7 647 1024 554961155 554961531 1.840000e-68 270.0
21 TraesCS1A01G270500 chr4B 79.634 383 67 9 647 1024 654981850 654982226 8.580000e-67 265.0
22 TraesCS1A01G270500 chr4B 90.099 101 8 2 3380 3480 483511816 483511718 3.270000e-26 130.0
23 TraesCS1A01G270500 chr6B 79.427 384 66 11 647 1024 76215377 76215753 3.990000e-65 259.0
24 TraesCS1A01G270500 chr6B 92.553 94 7 0 3384 3477 76149745 76149838 7.020000e-28 135.0
25 TraesCS1A01G270500 chr5D 94.318 88 5 0 3388 3475 532592460 532592547 7.020000e-28 135.0
26 TraesCS1A01G270500 chr5D 92.473 93 5 2 3385 3476 128577584 128577675 9.080000e-27 132.0
27 TraesCS1A01G270500 chr5D 92.391 92 7 0 3381 3472 310276624 310276715 9.080000e-27 132.0
28 TraesCS1A01G270500 chr7D 90.196 102 8 2 3381 3480 270505868 270505969 9.080000e-27 132.0
29 TraesCS1A01G270500 chr5B 92.473 93 5 2 3385 3476 140965926 140966017 9.080000e-27 132.0
30 TraesCS1A01G270500 chr2B 92.391 92 7 0 3381 3472 494265176 494265085 9.080000e-27 132.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G270500 chr1A 464793523 464797550 4027 False 3437.50 5596 100.0000 1 4028 2 chr1A.!!$F2 4027
1 TraesCS1A01G270500 chr1D 365536790 365542743 5953 False 776.00 2425 89.9300 7 4026 5 chr1D.!!$F1 4019
2 TraesCS1A01G270500 chr1B 489134065 489134608 543 False 747.00 747 91.9270 1 528 1 chr1B.!!$F1 527
3 TraesCS1A01G270500 chr1B 489198568 489201752 3184 False 665.76 1404 93.9472 1044 4026 5 chr1B.!!$F4 2982

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
582 953 0.035534 TCTTTGCATCAGCGGGCTTA 60.036 50.0 0.00 0.00 46.23 3.09 F
696 2854 0.039618 ATGGCGGGTGGTTTCATTCT 59.960 50.0 0.00 0.00 0.00 2.40 F
2224 4739 0.040157 CGTGTGCACCTCAAATGTGG 60.040 55.0 15.69 0.12 34.27 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2202 4717 0.386352 CATTTGAGGTGCACACGCTG 60.386 55.0 20.43 4.17 39.64 5.18 R
2513 5210 0.474184 ATATGAAGACAAGGGGGCCG 59.526 55.0 0.00 0.00 0.00 6.13 R
3975 7178 0.321671 TGTAGGGTCACAAGAGCAGC 59.678 55.0 0.00 0.00 43.97 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 2.109126 GCTGACAAGATGCCCGGTC 61.109 63.158 0.00 0.00 0.00 4.79
93 94 1.579429 GTCGCATGTTGGTGGTTCC 59.421 57.895 0.00 0.00 0.00 3.62
170 176 5.882557 ACTTCCCTGATTTGCTGTGTAATAG 59.117 40.000 0.00 0.00 0.00 1.73
207 213 2.548480 GTGGTCAGAAACTACACTTGGC 59.452 50.000 0.00 0.00 39.08 4.52
232 238 3.510719 CATGGTTTCATGTTTAAGCCGG 58.489 45.455 0.00 0.00 44.22 6.13
253 263 0.957395 TTGCTTGCTGCTAGCCTGTC 60.957 55.000 28.15 6.23 41.51 3.51
268 278 3.077359 GCCTGTCAATGCTCACTTTACT 58.923 45.455 0.00 0.00 0.00 2.24
270 280 3.369147 CCTGTCAATGCTCACTTTACTCG 59.631 47.826 0.00 0.00 0.00 4.18
274 284 5.805486 TGTCAATGCTCACTTTACTCGTATC 59.195 40.000 0.00 0.00 0.00 2.24
279 289 6.519679 TGCTCACTTTACTCGTATCCTTTA 57.480 37.500 0.00 0.00 0.00 1.85
280 295 6.327934 TGCTCACTTTACTCGTATCCTTTAC 58.672 40.000 0.00 0.00 0.00 2.01
298 313 1.308877 ACCCCCACTGGCTGAATAAT 58.691 50.000 0.00 0.00 0.00 1.28
304 319 1.331756 CACTGGCTGAATAATCGTGGC 59.668 52.381 0.00 0.00 0.00 5.01
305 320 0.583438 CTGGCTGAATAATCGTGGCG 59.417 55.000 0.00 0.00 32.50 5.69
356 373 7.735917 TGTGCTATGCCTAGAAATAATACAGT 58.264 34.615 0.00 0.00 0.00 3.55
359 376 8.531982 TGCTATGCCTAGAAATAATACAGTAGG 58.468 37.037 0.00 0.00 0.00 3.18
420 601 5.432157 CGTAAATAAGATCGTGGTTGATGC 58.568 41.667 0.00 0.00 0.00 3.91
502 692 2.939022 GTGCACTCTGTTCGCCAC 59.061 61.111 10.32 0.00 0.00 5.01
528 718 2.484594 GGAGCATTCTAGGTCTGCTTCC 60.485 54.545 13.44 12.10 45.79 3.46
529 719 1.488393 AGCATTCTAGGTCTGCTTCCC 59.512 52.381 8.28 0.00 43.44 3.97
530 720 1.488393 GCATTCTAGGTCTGCTTCCCT 59.512 52.381 5.25 0.00 33.15 4.20
531 721 2.484594 GCATTCTAGGTCTGCTTCCCTC 60.485 54.545 5.25 0.00 33.15 4.30
533 723 2.445682 TCTAGGTCTGCTTCCCTCTC 57.554 55.000 0.00 0.00 32.08 3.20
534 724 1.926665 TCTAGGTCTGCTTCCCTCTCT 59.073 52.381 0.00 0.00 32.08 3.10
535 725 2.031120 CTAGGTCTGCTTCCCTCTCTG 58.969 57.143 0.00 0.00 32.08 3.35
537 727 1.008206 AGGTCTGCTTCCCTCTCTGAT 59.992 52.381 0.00 0.00 0.00 2.90
571 942 2.227388 CTCTTCGGCAGTTTCTTTGCAT 59.773 45.455 0.00 0.00 43.28 3.96
577 948 1.973138 CAGTTTCTTTGCATCAGCGG 58.027 50.000 0.00 0.00 46.23 5.52
578 949 0.883833 AGTTTCTTTGCATCAGCGGG 59.116 50.000 0.00 0.00 46.23 6.13
579 950 0.733909 GTTTCTTTGCATCAGCGGGC 60.734 55.000 0.00 0.00 46.23 6.13
581 952 0.895100 TTCTTTGCATCAGCGGGCTT 60.895 50.000 0.00 0.00 46.23 4.35
582 953 0.035534 TCTTTGCATCAGCGGGCTTA 60.036 50.000 0.00 0.00 46.23 3.09
583 954 0.099436 CTTTGCATCAGCGGGCTTAC 59.901 55.000 0.00 0.00 46.23 2.34
584 955 0.607762 TTTGCATCAGCGGGCTTACA 60.608 50.000 0.00 0.00 46.23 2.41
585 956 0.607762 TTGCATCAGCGGGCTTACAA 60.608 50.000 0.00 0.00 46.23 2.41
586 957 0.607762 TGCATCAGCGGGCTTACAAA 60.608 50.000 0.00 0.00 46.23 2.83
587 958 0.525761 GCATCAGCGGGCTTACAAAA 59.474 50.000 0.00 0.00 0.00 2.44
589 960 2.801063 CATCAGCGGGCTTACAAAATG 58.199 47.619 0.00 0.00 0.00 2.32
591 962 0.798009 CAGCGGGCTTACAAAATGCG 60.798 55.000 0.00 0.00 0.00 4.73
596 2754 0.525761 GGCTTACAAAATGCGCAGGA 59.474 50.000 18.32 0.00 0.00 3.86
603 2761 1.402968 CAAAATGCGCAGGAGCTATGT 59.597 47.619 18.32 0.00 39.10 2.29
608 2766 0.524180 GCGCAGGAGCTATGTTTTGC 60.524 55.000 0.30 0.00 39.10 3.68
609 2767 0.804364 CGCAGGAGCTATGTTTTGCA 59.196 50.000 0.00 0.00 39.10 4.08
610 2768 1.202110 CGCAGGAGCTATGTTTTGCAG 60.202 52.381 0.00 0.00 39.10 4.41
611 2769 1.133790 GCAGGAGCTATGTTTTGCAGG 59.866 52.381 0.00 0.00 37.91 4.85
612 2770 2.715046 CAGGAGCTATGTTTTGCAGGA 58.285 47.619 0.00 0.00 0.00 3.86
613 2771 2.681848 CAGGAGCTATGTTTTGCAGGAG 59.318 50.000 0.00 0.00 0.00 3.69
615 2773 1.403323 GAGCTATGTTTTGCAGGAGCC 59.597 52.381 0.00 0.00 39.50 4.70
616 2774 1.176527 GCTATGTTTTGCAGGAGCCA 58.823 50.000 0.00 0.00 41.13 4.75
617 2775 1.753073 GCTATGTTTTGCAGGAGCCAT 59.247 47.619 0.00 0.00 41.13 4.40
618 2776 2.480759 GCTATGTTTTGCAGGAGCCATG 60.481 50.000 0.00 0.00 41.13 3.66
619 2777 1.636148 ATGTTTTGCAGGAGCCATGT 58.364 45.000 0.00 0.00 41.13 3.21
620 2778 1.412079 TGTTTTGCAGGAGCCATGTT 58.588 45.000 0.00 0.00 41.13 2.71
621 2779 1.761784 TGTTTTGCAGGAGCCATGTTT 59.238 42.857 0.00 0.00 41.13 2.83
622 2780 2.170187 TGTTTTGCAGGAGCCATGTTTT 59.830 40.909 0.00 0.00 41.13 2.43
623 2781 3.205338 GTTTTGCAGGAGCCATGTTTTT 58.795 40.909 0.00 0.00 41.13 1.94
645 2803 6.952773 TTTGACCAAACTTAGCATTACAGT 57.047 33.333 0.00 0.00 0.00 3.55
646 2804 8.453238 TTTTGACCAAACTTAGCATTACAGTA 57.547 30.769 0.00 0.00 0.00 2.74
647 2805 7.429636 TTGACCAAACTTAGCATTACAGTAC 57.570 36.000 0.00 0.00 0.00 2.73
648 2806 5.636121 TGACCAAACTTAGCATTACAGTACG 59.364 40.000 0.00 0.00 0.00 3.67
650 2808 5.172934 CCAAACTTAGCATTACAGTACGGA 58.827 41.667 0.00 0.00 0.00 4.69
651 2809 5.640357 CCAAACTTAGCATTACAGTACGGAA 59.360 40.000 0.00 0.00 0.00 4.30
652 2810 6.401796 CCAAACTTAGCATTACAGTACGGAAC 60.402 42.308 0.00 0.00 0.00 3.62
668 2826 3.455619 GGAACGTGTGCTAGATTTGTG 57.544 47.619 0.00 0.00 0.00 3.33
670 2828 2.543777 ACGTGTGCTAGATTTGTGGT 57.456 45.000 0.00 0.00 0.00 4.16
671 2829 2.846193 ACGTGTGCTAGATTTGTGGTT 58.154 42.857 0.00 0.00 0.00 3.67
672 2830 2.548057 ACGTGTGCTAGATTTGTGGTTG 59.452 45.455 0.00 0.00 0.00 3.77
673 2831 2.805671 CGTGTGCTAGATTTGTGGTTGA 59.194 45.455 0.00 0.00 0.00 3.18
674 2832 3.436704 CGTGTGCTAGATTTGTGGTTGAT 59.563 43.478 0.00 0.00 0.00 2.57
676 2834 3.758023 TGTGCTAGATTTGTGGTTGATGG 59.242 43.478 0.00 0.00 0.00 3.51
677 2835 4.009675 GTGCTAGATTTGTGGTTGATGGA 58.990 43.478 0.00 0.00 0.00 3.41
678 2836 4.641989 GTGCTAGATTTGTGGTTGATGGAT 59.358 41.667 0.00 0.00 0.00 3.41
679 2837 4.641541 TGCTAGATTTGTGGTTGATGGATG 59.358 41.667 0.00 0.00 0.00 3.51
681 2839 2.762327 AGATTTGTGGTTGATGGATGGC 59.238 45.455 0.00 0.00 0.00 4.40
684 2842 2.120909 GTGGTTGATGGATGGCGGG 61.121 63.158 0.00 0.00 0.00 6.13
685 2843 2.275418 GGTTGATGGATGGCGGGT 59.725 61.111 0.00 0.00 0.00 5.28
686 2844 2.120909 GGTTGATGGATGGCGGGTG 61.121 63.158 0.00 0.00 0.00 4.61
687 2845 2.120909 GTTGATGGATGGCGGGTGG 61.121 63.158 0.00 0.00 0.00 4.61
688 2846 2.611505 TTGATGGATGGCGGGTGGT 61.612 57.895 0.00 0.00 0.00 4.16
689 2847 2.148723 TTGATGGATGGCGGGTGGTT 62.149 55.000 0.00 0.00 0.00 3.67
690 2848 1.379843 GATGGATGGCGGGTGGTTT 60.380 57.895 0.00 0.00 0.00 3.27
691 2849 1.379843 ATGGATGGCGGGTGGTTTC 60.380 57.895 0.00 0.00 0.00 2.78
692 2850 2.034999 GGATGGCGGGTGGTTTCA 59.965 61.111 0.00 0.00 0.00 2.69
693 2851 1.379843 GGATGGCGGGTGGTTTCAT 60.380 57.895 0.00 0.00 0.00 2.57
694 2852 0.970427 GGATGGCGGGTGGTTTCATT 60.970 55.000 0.00 0.00 0.00 2.57
696 2854 0.039618 ATGGCGGGTGGTTTCATTCT 59.960 50.000 0.00 0.00 0.00 2.40
697 2855 0.178975 TGGCGGGTGGTTTCATTCTT 60.179 50.000 0.00 0.00 0.00 2.52
699 2857 0.168128 GCGGGTGGTTTCATTCTTCG 59.832 55.000 0.00 0.00 0.00 3.79
703 2861 2.227194 GGTGGTTTCATTCTTCGGTGT 58.773 47.619 0.00 0.00 0.00 4.16
705 2863 3.139077 GTGGTTTCATTCTTCGGTGTCT 58.861 45.455 0.00 0.00 0.00 3.41
707 2865 4.753107 GTGGTTTCATTCTTCGGTGTCTTA 59.247 41.667 0.00 0.00 0.00 2.10
708 2866 4.994852 TGGTTTCATTCTTCGGTGTCTTAG 59.005 41.667 0.00 0.00 0.00 2.18
711 2869 4.092771 TCATTCTTCGGTGTCTTAGTCG 57.907 45.455 0.00 0.00 0.00 4.18
712 2870 3.504906 TCATTCTTCGGTGTCTTAGTCGT 59.495 43.478 0.00 0.00 0.00 4.34
713 2871 2.983402 TCTTCGGTGTCTTAGTCGTG 57.017 50.000 0.00 0.00 0.00 4.35
715 2873 3.079578 TCTTCGGTGTCTTAGTCGTGAT 58.920 45.455 0.00 0.00 0.00 3.06
716 2874 2.913777 TCGGTGTCTTAGTCGTGATG 57.086 50.000 0.00 0.00 0.00 3.07
717 2875 1.471287 TCGGTGTCTTAGTCGTGATGG 59.529 52.381 0.00 0.00 0.00 3.51
718 2876 1.469251 CGGTGTCTTAGTCGTGATGGG 60.469 57.143 0.00 0.00 0.00 4.00
720 2878 1.549170 GTGTCTTAGTCGTGATGGGGT 59.451 52.381 0.00 0.00 0.00 4.95
723 2881 0.537188 CTTAGTCGTGATGGGGTGCT 59.463 55.000 0.00 0.00 0.00 4.40
724 2882 1.754803 CTTAGTCGTGATGGGGTGCTA 59.245 52.381 0.00 0.00 0.00 3.49
726 2884 0.981183 AGTCGTGATGGGGTGCTAAA 59.019 50.000 0.00 0.00 0.00 1.85
727 2885 1.559682 AGTCGTGATGGGGTGCTAAAT 59.440 47.619 0.00 0.00 0.00 1.40
728 2886 1.940613 GTCGTGATGGGGTGCTAAATC 59.059 52.381 0.00 0.00 0.00 2.17
729 2887 1.837439 TCGTGATGGGGTGCTAAATCT 59.163 47.619 0.00 0.00 0.00 2.40
730 2888 3.035363 TCGTGATGGGGTGCTAAATCTA 58.965 45.455 0.00 0.00 0.00 1.98
731 2889 3.452990 TCGTGATGGGGTGCTAAATCTAA 59.547 43.478 0.00 0.00 0.00 2.10
732 2890 4.080807 TCGTGATGGGGTGCTAAATCTAAA 60.081 41.667 0.00 0.00 0.00 1.85
734 2892 5.193679 GTGATGGGGTGCTAAATCTAAAGT 58.806 41.667 0.00 0.00 0.00 2.66
736 2894 5.885912 TGATGGGGTGCTAAATCTAAAGTTC 59.114 40.000 0.00 0.00 0.00 3.01
737 2895 5.249780 TGGGGTGCTAAATCTAAAGTTCA 57.750 39.130 0.00 0.00 0.00 3.18
738 2896 5.636123 TGGGGTGCTAAATCTAAAGTTCAA 58.364 37.500 0.00 0.00 0.00 2.69
739 2897 6.252995 TGGGGTGCTAAATCTAAAGTTCAAT 58.747 36.000 0.00 0.00 0.00 2.57
740 2898 6.152661 TGGGGTGCTAAATCTAAAGTTCAATG 59.847 38.462 0.00 0.00 0.00 2.82
741 2899 6.405842 GGGGTGCTAAATCTAAAGTTCAATGG 60.406 42.308 0.00 0.00 0.00 3.16
742 2900 6.036470 GGTGCTAAATCTAAAGTTCAATGGC 58.964 40.000 0.00 0.00 0.00 4.40
743 2901 5.739161 GTGCTAAATCTAAAGTTCAATGGCG 59.261 40.000 0.00 0.00 0.00 5.69
744 2902 5.414454 TGCTAAATCTAAAGTTCAATGGCGT 59.586 36.000 0.00 0.00 0.00 5.68
745 2903 5.739161 GCTAAATCTAAAGTTCAATGGCGTG 59.261 40.000 0.00 0.00 0.00 5.34
746 2904 5.705609 AAATCTAAAGTTCAATGGCGTGT 57.294 34.783 0.00 0.00 0.00 4.49
747 2905 5.705609 AATCTAAAGTTCAATGGCGTGTT 57.294 34.783 0.00 0.00 0.00 3.32
748 2906 5.705609 ATCTAAAGTTCAATGGCGTGTTT 57.294 34.783 0.00 0.00 0.00 2.83
749 2907 6.811253 ATCTAAAGTTCAATGGCGTGTTTA 57.189 33.333 0.00 0.00 0.00 2.01
750 2908 6.236017 TCTAAAGTTCAATGGCGTGTTTAG 57.764 37.500 0.00 0.00 0.00 1.85
751 2909 3.915437 AAGTTCAATGGCGTGTTTAGG 57.085 42.857 0.00 0.00 0.00 2.69
752 2910 2.159382 AGTTCAATGGCGTGTTTAGGG 58.841 47.619 0.00 0.00 0.00 3.53
753 2911 1.883926 GTTCAATGGCGTGTTTAGGGT 59.116 47.619 0.00 0.00 0.00 4.34
754 2912 1.529226 TCAATGGCGTGTTTAGGGTG 58.471 50.000 0.00 0.00 0.00 4.61
755 2913 1.202830 TCAATGGCGTGTTTAGGGTGT 60.203 47.619 0.00 0.00 0.00 4.16
756 2914 1.611491 CAATGGCGTGTTTAGGGTGTT 59.389 47.619 0.00 0.00 0.00 3.32
757 2915 1.243902 ATGGCGTGTTTAGGGTGTTG 58.756 50.000 0.00 0.00 0.00 3.33
758 2916 1.284715 GGCGTGTTTAGGGTGTTGC 59.715 57.895 0.00 0.00 0.00 4.17
759 2917 1.284715 GCGTGTTTAGGGTGTTGCC 59.715 57.895 0.00 0.00 0.00 4.52
768 2926 2.836154 GGTGTTGCCCTGGTCTGA 59.164 61.111 0.00 0.00 0.00 3.27
769 2927 1.380302 GGTGTTGCCCTGGTCTGAT 59.620 57.895 0.00 0.00 0.00 2.90
770 2928 0.251341 GGTGTTGCCCTGGTCTGATT 60.251 55.000 0.00 0.00 0.00 2.57
771 2929 1.620822 GTGTTGCCCTGGTCTGATTT 58.379 50.000 0.00 0.00 0.00 2.17
772 2930 1.270550 GTGTTGCCCTGGTCTGATTTG 59.729 52.381 0.00 0.00 0.00 2.32
773 2931 1.133513 TGTTGCCCTGGTCTGATTTGT 60.134 47.619 0.00 0.00 0.00 2.83
774 2932 1.963515 GTTGCCCTGGTCTGATTTGTT 59.036 47.619 0.00 0.00 0.00 2.83
775 2933 1.909700 TGCCCTGGTCTGATTTGTTC 58.090 50.000 0.00 0.00 0.00 3.18
776 2934 1.144708 TGCCCTGGTCTGATTTGTTCA 59.855 47.619 0.00 0.00 0.00 3.18
777 2935 2.238521 GCCCTGGTCTGATTTGTTCAA 58.761 47.619 0.00 0.00 32.78 2.69
778 2936 2.827921 GCCCTGGTCTGATTTGTTCAAT 59.172 45.455 0.00 0.00 32.78 2.57
779 2937 4.016444 GCCCTGGTCTGATTTGTTCAATA 58.984 43.478 0.00 0.00 32.78 1.90
780 2938 4.462483 GCCCTGGTCTGATTTGTTCAATAA 59.538 41.667 0.00 0.00 32.78 1.40
781 2939 5.622233 GCCCTGGTCTGATTTGTTCAATAAC 60.622 44.000 0.00 0.00 32.78 1.89
782 2940 5.476599 CCCTGGTCTGATTTGTTCAATAACA 59.523 40.000 0.00 0.00 43.85 2.41
795 2953 7.759489 TGTTCAATAACAATGGCTTTACTCT 57.241 32.000 0.00 0.00 42.60 3.24
796 2954 8.177119 TGTTCAATAACAATGGCTTTACTCTT 57.823 30.769 0.00 0.00 42.60 2.85
797 2955 8.081633 TGTTCAATAACAATGGCTTTACTCTTG 58.918 33.333 0.00 0.00 42.60 3.02
798 2956 7.156876 TCAATAACAATGGCTTTACTCTTGG 57.843 36.000 0.00 0.00 0.00 3.61
799 2957 6.719370 TCAATAACAATGGCTTTACTCTTGGT 59.281 34.615 0.00 0.00 0.00 3.67
800 2958 4.853924 AACAATGGCTTTACTCTTGGTG 57.146 40.909 0.00 0.00 0.00 4.17
801 2959 4.098914 ACAATGGCTTTACTCTTGGTGA 57.901 40.909 0.00 0.00 0.00 4.02
815 2973 5.848406 CTCTTGGTGAGTCACTTTAGAAGT 58.152 41.667 22.18 0.00 39.00 3.01
816 2974 5.844004 TCTTGGTGAGTCACTTTAGAAGTC 58.156 41.667 22.18 3.56 40.46 3.01
817 2975 4.602340 TGGTGAGTCACTTTAGAAGTCC 57.398 45.455 22.18 2.83 40.46 3.85
818 2976 3.005472 TGGTGAGTCACTTTAGAAGTCCG 59.995 47.826 22.18 0.00 40.46 4.79
819 2977 2.987821 GTGAGTCACTTTAGAAGTCCGC 59.012 50.000 16.26 0.00 40.46 5.54
820 2978 2.626266 TGAGTCACTTTAGAAGTCCGCA 59.374 45.455 0.00 0.00 40.46 5.69
821 2979 3.069016 TGAGTCACTTTAGAAGTCCGCAA 59.931 43.478 0.00 0.00 40.46 4.85
822 2980 4.056050 GAGTCACTTTAGAAGTCCGCAAA 58.944 43.478 0.00 0.00 40.46 3.68
823 2981 4.058817 AGTCACTTTAGAAGTCCGCAAAG 58.941 43.478 0.00 0.00 40.46 2.77
824 2982 2.806244 TCACTTTAGAAGTCCGCAAAGC 59.194 45.455 0.00 0.00 40.46 3.51
825 2983 2.808543 CACTTTAGAAGTCCGCAAAGCT 59.191 45.455 0.00 0.00 40.46 3.74
826 2984 2.808543 ACTTTAGAAGTCCGCAAAGCTG 59.191 45.455 0.00 0.00 37.02 4.24
827 2985 1.156736 TTAGAAGTCCGCAAAGCTGC 58.843 50.000 0.00 0.00 45.75 5.25
840 2998 3.818387 CAAAGCTGCATATTAGCGATGG 58.182 45.455 1.02 0.00 45.61 3.51
841 2999 3.407424 AAGCTGCATATTAGCGATGGA 57.593 42.857 1.02 0.00 45.61 3.41
842 3000 3.407424 AGCTGCATATTAGCGATGGAA 57.593 42.857 1.02 0.00 45.61 3.53
843 3001 3.947868 AGCTGCATATTAGCGATGGAAT 58.052 40.909 1.02 0.00 45.61 3.01
844 3002 3.688185 AGCTGCATATTAGCGATGGAATG 59.312 43.478 1.02 0.00 45.61 2.67
845 3003 3.181503 GCTGCATATTAGCGATGGAATGG 60.182 47.826 0.00 0.00 37.31 3.16
846 3004 4.256110 CTGCATATTAGCGATGGAATGGA 58.744 43.478 0.00 0.00 37.31 3.41
847 3005 4.256110 TGCATATTAGCGATGGAATGGAG 58.744 43.478 0.00 0.00 37.31 3.86
848 3006 3.064545 GCATATTAGCGATGGAATGGAGC 59.935 47.826 0.00 0.00 0.00 4.70
849 3007 4.511527 CATATTAGCGATGGAATGGAGCT 58.488 43.478 0.00 0.00 41.45 4.09
850 3008 2.245159 TTAGCGATGGAATGGAGCTG 57.755 50.000 0.00 0.00 38.73 4.24
851 3009 0.250038 TAGCGATGGAATGGAGCTGC 60.250 55.000 0.00 0.00 38.73 5.25
852 3010 1.525535 GCGATGGAATGGAGCTGCT 60.526 57.895 6.82 0.00 0.00 4.24
853 3011 1.099879 GCGATGGAATGGAGCTGCTT 61.100 55.000 6.82 0.00 0.00 3.91
854 3012 0.942962 CGATGGAATGGAGCTGCTTC 59.057 55.000 6.82 0.96 0.00 3.86
855 3013 0.942962 GATGGAATGGAGCTGCTTCG 59.057 55.000 6.82 0.00 0.00 3.79
856 3014 0.543277 ATGGAATGGAGCTGCTTCGA 59.457 50.000 6.82 5.77 0.00 3.71
857 3015 0.324614 TGGAATGGAGCTGCTTCGAA 59.675 50.000 6.82 0.00 0.00 3.71
858 3016 0.729690 GGAATGGAGCTGCTTCGAAC 59.270 55.000 6.82 0.00 0.00 3.95
859 3017 1.677217 GGAATGGAGCTGCTTCGAACT 60.677 52.381 6.82 0.00 0.00 3.01
860 3018 1.663135 GAATGGAGCTGCTTCGAACTC 59.337 52.381 6.82 0.00 0.00 3.01
861 3019 0.459237 ATGGAGCTGCTTCGAACTCG 60.459 55.000 6.82 0.00 41.45 4.18
875 3033 2.752238 CTCGAGTGAGGAGGCGGT 60.752 66.667 3.62 0.00 38.65 5.68
876 3034 2.750637 TCGAGTGAGGAGGCGGTC 60.751 66.667 0.00 0.00 0.00 4.79
884 3042 3.635510 GGAGGCGGTCCATCTTCT 58.364 61.111 0.00 0.00 46.10 2.85
885 3043 1.908483 GGAGGCGGTCCATCTTCTT 59.092 57.895 0.00 0.00 46.10 2.52
886 3044 0.253327 GGAGGCGGTCCATCTTCTTT 59.747 55.000 0.00 0.00 46.10 2.52
887 3045 1.340114 GGAGGCGGTCCATCTTCTTTT 60.340 52.381 0.00 0.00 46.10 2.27
888 3046 2.437413 GAGGCGGTCCATCTTCTTTTT 58.563 47.619 0.00 0.00 33.74 1.94
889 3047 2.420372 GAGGCGGTCCATCTTCTTTTTC 59.580 50.000 0.00 0.00 33.74 2.29
890 3048 2.040412 AGGCGGTCCATCTTCTTTTTCT 59.960 45.455 0.00 0.00 33.74 2.52
891 3049 2.820197 GGCGGTCCATCTTCTTTTTCTT 59.180 45.455 0.00 0.00 0.00 2.52
892 3050 3.255888 GGCGGTCCATCTTCTTTTTCTTT 59.744 43.478 0.00 0.00 0.00 2.52
894 3052 4.798574 CGGTCCATCTTCTTTTTCTTTGG 58.201 43.478 0.00 0.00 0.00 3.28
898 3056 4.039124 TCCATCTTCTTTTTCTTTGGTGGC 59.961 41.667 0.00 0.00 0.00 5.01
899 3057 4.039609 CCATCTTCTTTTTCTTTGGTGGCT 59.960 41.667 0.00 0.00 0.00 4.75
902 3060 1.412343 TCTTTTTCTTTGGTGGCTGCC 59.588 47.619 12.87 12.87 0.00 4.85
921 3079 2.110213 TGGTGGTGCCGAAGACAC 59.890 61.111 0.00 0.00 41.21 3.67
922 3080 3.041940 GGTGGTGCCGAAGACACG 61.042 66.667 0.00 0.00 38.98 4.49
924 3082 2.279851 TGGTGCCGAAGACACGTG 60.280 61.111 15.48 15.48 38.98 4.49
925 3083 2.028484 GGTGCCGAAGACACGTGA 59.972 61.111 25.01 0.00 38.98 4.35
926 3084 2.308039 GGTGCCGAAGACACGTGAC 61.308 63.158 25.01 17.23 38.98 3.67
927 3085 1.590525 GTGCCGAAGACACGTGACA 60.591 57.895 25.01 5.47 0.00 3.58
928 3086 1.299850 TGCCGAAGACACGTGACAG 60.300 57.895 25.01 11.44 0.00 3.51
929 3087 1.007734 GCCGAAGACACGTGACAGA 60.008 57.895 25.01 0.00 0.00 3.41
930 3088 1.276145 GCCGAAGACACGTGACAGAC 61.276 60.000 25.01 10.36 0.00 3.51
939 3097 2.016704 CGTGACAGACGCTGGTGTC 61.017 63.158 10.80 6.21 42.21 3.67
941 3099 4.750460 GACAGACGCTGGTGTCAA 57.250 55.556 15.24 0.00 42.31 3.18
944 3102 1.301244 CAGACGCTGGTGTCAAGCT 60.301 57.895 15.24 0.00 41.41 3.74
946 3104 0.679505 AGACGCTGGTGTCAAGCTTA 59.320 50.000 15.24 0.00 41.41 3.09
949 3107 2.289547 GACGCTGGTGTCAAGCTTAAAA 59.710 45.455 0.00 0.00 38.75 1.52
950 3108 2.884639 ACGCTGGTGTCAAGCTTAAAAT 59.115 40.909 0.00 0.00 0.00 1.82
951 3109 3.236816 CGCTGGTGTCAAGCTTAAAATG 58.763 45.455 0.00 0.00 0.00 2.32
952 3110 3.304659 CGCTGGTGTCAAGCTTAAAATGT 60.305 43.478 0.00 0.00 0.00 2.71
953 3111 4.620982 GCTGGTGTCAAGCTTAAAATGTT 58.379 39.130 0.00 0.00 0.00 2.71
956 3114 6.293955 GCTGGTGTCAAGCTTAAAATGTTCTA 60.294 38.462 0.00 0.00 0.00 2.10
958 3116 7.816640 TGGTGTCAAGCTTAAAATGTTCTATC 58.183 34.615 0.00 0.00 0.00 2.08
960 3118 8.462016 GGTGTCAAGCTTAAAATGTTCTATCAT 58.538 33.333 0.00 0.00 0.00 2.45
961 3119 9.495754 GTGTCAAGCTTAAAATGTTCTATCATC 57.504 33.333 0.00 0.00 0.00 2.92
962 3120 9.453572 TGTCAAGCTTAAAATGTTCTATCATCT 57.546 29.630 0.00 0.00 0.00 2.90
982 3140 7.751732 TCATCTTTTCAGTTTTATCATGTCGG 58.248 34.615 0.00 0.00 0.00 4.79
983 3141 7.390440 TCATCTTTTCAGTTTTATCATGTCGGT 59.610 33.333 0.00 0.00 0.00 4.69
985 3143 5.873179 TTTCAGTTTTATCATGTCGGTCC 57.127 39.130 0.00 0.00 0.00 4.46
986 3144 4.819105 TCAGTTTTATCATGTCGGTCCT 57.181 40.909 0.00 0.00 0.00 3.85
987 3145 5.160607 TCAGTTTTATCATGTCGGTCCTT 57.839 39.130 0.00 0.00 0.00 3.36
988 3146 6.288941 TCAGTTTTATCATGTCGGTCCTTA 57.711 37.500 0.00 0.00 0.00 2.69
989 3147 6.103997 TCAGTTTTATCATGTCGGTCCTTAC 58.896 40.000 0.00 0.00 0.00 2.34
990 3148 5.872617 CAGTTTTATCATGTCGGTCCTTACA 59.127 40.000 0.00 0.00 0.00 2.41
991 3149 6.538742 CAGTTTTATCATGTCGGTCCTTACAT 59.461 38.462 0.00 1.78 36.78 2.29
998 3156 2.631062 TGTCGGTCCTTACATGACTTGT 59.369 45.455 0.00 0.00 42.62 3.16
999 3157 3.827876 TGTCGGTCCTTACATGACTTGTA 59.172 43.478 0.00 0.00 39.87 2.41
1001 3159 4.082354 GTCGGTCCTTACATGACTTGTACT 60.082 45.833 0.00 0.00 40.53 2.73
1002 3160 4.525487 TCGGTCCTTACATGACTTGTACTT 59.475 41.667 0.00 0.00 40.53 2.24
1003 3161 4.863131 CGGTCCTTACATGACTTGTACTTC 59.137 45.833 0.00 0.00 40.53 3.01
1004 3162 4.863131 GGTCCTTACATGACTTGTACTTCG 59.137 45.833 0.00 0.00 40.53 3.79
1009 3436 6.645415 CCTTACATGACTTGTACTTCGAACTT 59.355 38.462 0.00 0.00 40.53 2.66
1011 3438 8.511465 TTACATGACTTGTACTTCGAACTTAC 57.489 34.615 0.00 0.00 40.53 2.34
1014 3441 6.005583 TGACTTGTACTTCGAACTTACGAT 57.994 37.500 0.00 0.00 41.82 3.73
1018 3445 9.708222 GACTTGTACTTCGAACTTACGATATAA 57.292 33.333 0.00 0.00 41.82 0.98
1070 3547 3.510531 AGATCTGACGAGGGCATACTA 57.489 47.619 0.00 0.00 0.00 1.82
1119 3596 1.220749 CGGGGAAATCGGCAGAAGA 59.779 57.895 0.00 0.00 0.00 2.87
1132 3609 1.260561 GCAGAAGAAAAACGCGACTCA 59.739 47.619 15.93 0.00 0.00 3.41
1184 3689 2.974698 GCGCGATCCAATGGAGGG 60.975 66.667 12.10 4.67 34.05 4.30
1334 3839 4.948257 GGTACCCCGCGAGAAATT 57.052 55.556 8.23 0.00 0.00 1.82
1345 3850 0.919710 CGAGAAATTCCCCCTCCCTT 59.080 55.000 0.00 0.00 0.00 3.95
1359 3867 1.964933 CTCCCTTTCTCCCCGTCTATC 59.035 57.143 0.00 0.00 0.00 2.08
1544 4053 2.207924 GGGACGGGACAGACACAGT 61.208 63.158 0.00 0.00 0.00 3.55
1545 4054 0.896940 GGGACGGGACAGACACAGTA 60.897 60.000 0.00 0.00 0.00 2.74
1569 4078 4.400120 AGTAAATTTTGCCGGGAGTGTAA 58.600 39.130 2.18 0.00 0.00 2.41
1570 4079 3.934457 AAATTTTGCCGGGAGTGTAAG 57.066 42.857 2.18 0.00 0.00 2.34
1571 4080 2.579410 ATTTTGCCGGGAGTGTAAGT 57.421 45.000 2.18 0.00 0.00 2.24
1572 4081 1.600023 TTTTGCCGGGAGTGTAAGTG 58.400 50.000 2.18 0.00 0.00 3.16
1573 4082 0.250553 TTTGCCGGGAGTGTAAGTGG 60.251 55.000 2.18 0.00 0.00 4.00
1574 4083 2.119484 TTGCCGGGAGTGTAAGTGGG 62.119 60.000 2.18 0.00 0.00 4.61
1614 4123 4.764050 TGAGTTCCAACTTCTAACCACA 57.236 40.909 0.00 0.00 39.88 4.17
1635 4144 5.049828 ACAGCAGCTTTTGTCCAATTTTAC 58.950 37.500 0.00 0.00 0.00 2.01
1638 4147 5.985530 AGCAGCTTTTGTCCAATTTTACTTC 59.014 36.000 0.00 0.00 0.00 3.01
1644 4153 8.968242 GCTTTTGTCCAATTTTACTTCTAGTTG 58.032 33.333 0.00 0.00 0.00 3.16
1659 4168 8.311650 ACTTCTAGTTGTGTTTCATACATCAC 57.688 34.615 0.00 0.00 39.39 3.06
1664 4175 6.173339 AGTTGTGTTTCATACATCACTAGGG 58.827 40.000 0.00 0.00 39.39 3.53
1665 4176 6.013725 AGTTGTGTTTCATACATCACTAGGGA 60.014 38.462 0.00 0.00 39.39 4.20
1698 4209 2.163412 GTCCAGTTATTTGCGCAATCCA 59.837 45.455 25.64 9.94 0.00 3.41
1734 4245 9.226606 ACTCAATTCTTGGTATACGATTGAAAA 57.773 29.630 13.34 0.00 0.00 2.29
1787 4298 5.233083 TCAATTAGGGCATGATCCACTAG 57.767 43.478 0.00 0.00 0.00 2.57
1863 4374 2.165030 GCACATAACTGAATGCCAGCTT 59.835 45.455 0.00 0.00 46.81 3.74
1864 4375 3.367703 GCACATAACTGAATGCCAGCTTT 60.368 43.478 0.00 0.00 46.81 3.51
1865 4376 4.418392 CACATAACTGAATGCCAGCTTTC 58.582 43.478 10.44 10.44 46.81 2.62
1866 4377 4.157289 CACATAACTGAATGCCAGCTTTCT 59.843 41.667 16.36 2.91 46.81 2.52
1867 4378 4.157289 ACATAACTGAATGCCAGCTTTCTG 59.843 41.667 17.72 17.72 46.81 3.02
1868 4379 0.886563 ACTGAATGCCAGCTTTCTGC 59.113 50.000 18.67 0.00 46.81 4.26
1881 4392 3.962423 GCTTTCTGCTGCCATAGATTTC 58.038 45.455 0.00 0.00 38.95 2.17
1882 4393 3.631227 GCTTTCTGCTGCCATAGATTTCT 59.369 43.478 0.00 0.00 38.95 2.52
1883 4394 4.261114 GCTTTCTGCTGCCATAGATTTCTC 60.261 45.833 0.00 0.00 38.95 2.87
1884 4395 3.103447 TCTGCTGCCATAGATTTCTCG 57.897 47.619 0.00 0.00 0.00 4.04
1885 4396 2.695147 TCTGCTGCCATAGATTTCTCGA 59.305 45.455 0.00 0.00 0.00 4.04
1886 4397 3.132824 TCTGCTGCCATAGATTTCTCGAA 59.867 43.478 0.00 0.00 0.00 3.71
1887 4398 4.063689 CTGCTGCCATAGATTTCTCGAAT 58.936 43.478 0.00 0.00 0.00 3.34
1888 4399 5.011023 TCTGCTGCCATAGATTTCTCGAATA 59.989 40.000 0.00 0.00 0.00 1.75
1889 4400 4.991056 TGCTGCCATAGATTTCTCGAATAC 59.009 41.667 0.00 0.00 0.00 1.89
1916 4427 5.402568 GTGCTACCATAGATGTCGTATTGTG 59.597 44.000 0.00 0.00 0.00 3.33
1937 4448 2.128771 TGCCATTCTAGTTCTTGCCC 57.871 50.000 0.00 0.00 0.00 5.36
1941 4452 3.545703 CCATTCTAGTTCTTGCCCGAAT 58.454 45.455 0.00 0.00 0.00 3.34
1999 4510 1.091771 AGATTCGATGCCTTGGCACG 61.092 55.000 17.22 19.92 0.00 5.34
2023 4534 9.314321 ACGAAGATTAAACATTCAGAATATCGT 57.686 29.630 0.00 0.00 33.07 3.73
2049 4561 1.570803 TTGAAGGGCATTGAATGGGG 58.429 50.000 7.35 0.00 0.00 4.96
2058 4570 1.677576 CATTGAATGGGGACGATGTGG 59.322 52.381 0.00 0.00 0.00 4.17
2080 4592 7.174253 TGTGGGAAATTTAGCTTGTTACAGTAG 59.826 37.037 0.00 0.00 0.00 2.57
2081 4593 7.389607 GTGGGAAATTTAGCTTGTTACAGTAGA 59.610 37.037 0.00 0.00 0.00 2.59
2082 4594 7.389607 TGGGAAATTTAGCTTGTTACAGTAGAC 59.610 37.037 0.00 0.00 0.00 2.59
2083 4595 7.148289 GGGAAATTTAGCTTGTTACAGTAGACC 60.148 40.741 0.00 0.00 0.00 3.85
2084 4596 7.389607 GGAAATTTAGCTTGTTACAGTAGACCA 59.610 37.037 0.00 0.00 0.00 4.02
2085 4597 8.863872 AAATTTAGCTTGTTACAGTAGACCAT 57.136 30.769 0.00 0.00 0.00 3.55
2086 4598 9.953565 AAATTTAGCTTGTTACAGTAGACCATA 57.046 29.630 0.00 0.00 0.00 2.74
2092 4604 8.705594 AGCTTGTTACAGTAGACCATATAATGT 58.294 33.333 0.00 0.00 35.75 2.71
2093 4605 8.765219 GCTTGTTACAGTAGACCATATAATGTG 58.235 37.037 0.00 0.00 33.81 3.21
2094 4606 9.817809 CTTGTTACAGTAGACCATATAATGTGT 57.182 33.333 0.00 0.00 33.81 3.72
2095 4607 9.594478 TTGTTACAGTAGACCATATAATGTGTG 57.406 33.333 0.00 0.00 33.81 3.82
2096 4608 8.973182 TGTTACAGTAGACCATATAATGTGTGA 58.027 33.333 0.00 0.00 33.81 3.58
2097 4609 9.811995 GTTACAGTAGACCATATAATGTGTGAA 57.188 33.333 0.00 0.00 33.81 3.18
2154 4666 3.806521 ACGCAGAGAAAGCATGCTATAAG 59.193 43.478 23.00 10.28 37.81 1.73
2167 4682 8.147642 AGCATGCTATAAGCTAACAGTTTTAG 57.852 34.615 21.21 0.00 42.97 1.85
2169 4684 7.852945 GCATGCTATAAGCTAACAGTTTTAGTG 59.147 37.037 11.37 0.00 42.97 2.74
2212 4727 0.179097 TGTAGTTGTCAGCGTGTGCA 60.179 50.000 0.00 0.00 46.23 4.57
2221 4736 0.386352 CAGCGTGTGCACCTCAAATG 60.386 55.000 15.69 1.32 46.23 2.32
2224 4739 0.040157 CGTGTGCACCTCAAATGTGG 60.040 55.000 15.69 0.12 34.27 4.17
2305 5002 3.795688 TGAGAAGGACCAAATGAAGCT 57.204 42.857 0.00 0.00 0.00 3.74
2306 5003 3.415212 TGAGAAGGACCAAATGAAGCTG 58.585 45.455 0.00 0.00 0.00 4.24
2312 5009 5.121380 AGGACCAAATGAAGCTGATACAT 57.879 39.130 0.00 0.00 0.00 2.29
2332 5029 5.748402 ACATCAGGTTGCAATAAGATCTCA 58.252 37.500 0.59 0.00 0.00 3.27
2483 5180 0.098200 GCCGGAATTACTTTGACCGC 59.902 55.000 5.05 0.00 41.86 5.68
2496 5193 3.011760 GACCGCGCTGGAGTTTTCG 62.012 63.158 22.10 0.00 42.00 3.46
2513 5210 0.249573 TCGTCTCCGTTGTTTGGTCC 60.250 55.000 0.00 0.00 35.01 4.46
2564 5261 5.406477 CACCGTGGTTAGTAAAAGACCTTAC 59.594 44.000 0.00 0.00 34.52 2.34
2566 5263 5.406477 CCGTGGTTAGTAAAAGACCTTACAC 59.594 44.000 0.00 0.00 34.75 2.90
2576 5273 1.066136 GACCTTACACGTTCCGAAGC 58.934 55.000 0.00 0.00 0.00 3.86
2590 5287 1.332375 CCGAAGCAAACCTTTTCGTCA 59.668 47.619 5.33 0.00 41.39 4.35
2597 5294 6.575162 AGCAAACCTTTTCGTCAATTAGAT 57.425 33.333 0.00 0.00 0.00 1.98
2603 5300 5.705441 ACCTTTTCGTCAATTAGATTCTGCA 59.295 36.000 0.00 0.00 0.00 4.41
2644 5341 8.490355 CAGCTTTGTTTACAATCCAAATCTTTC 58.510 33.333 0.00 0.00 35.55 2.62
2677 5374 6.096987 TCCAGGTTAGCTCTCTTATTACACTG 59.903 42.308 0.00 0.00 0.00 3.66
2680 5377 5.520649 GGTTAGCTCTCTTATTACACTGTGC 59.479 44.000 7.90 0.00 0.00 4.57
2724 5421 1.440145 GCAGAACTAAGGCATCGGGC 61.440 60.000 0.00 0.00 43.74 6.13
2743 5440 1.056103 CTCGTCTTGCTCGTGACAAG 58.944 55.000 12.43 12.43 44.76 3.16
2756 5453 4.253685 TCGTGACAAGGAGGAATGATTTC 58.746 43.478 0.00 0.00 0.00 2.17
2761 5458 7.657354 CGTGACAAGGAGGAATGATTTCATATA 59.343 37.037 0.00 0.00 35.10 0.86
2781 5478 9.847224 TCATATACTATTTTGGAAGAAGGGAAC 57.153 33.333 0.00 0.00 0.00 3.62
2800 5498 5.273944 GGAACAGAGTGTTGAATTGTTGAC 58.726 41.667 0.00 0.00 41.28 3.18
2821 5519 3.584848 ACCTTAGTCAGTGCTTGGATCTT 59.415 43.478 0.00 0.00 0.00 2.40
2860 5558 5.941948 ACCAAGTACTGTAAATGCTTCAC 57.058 39.130 0.00 0.00 0.00 3.18
3397 6270 9.137459 AGTGATAAATATCATATACTCCCTCCG 57.863 37.037 6.41 0.00 43.82 4.63
3398 6271 8.915036 GTGATAAATATCATATACTCCCTCCGT 58.085 37.037 6.41 0.00 43.82 4.69
3403 6276 9.543231 AAATATCATATACTCCCTCCGTAAAGA 57.457 33.333 0.00 0.00 0.00 2.52
3404 6277 9.543231 AATATCATATACTCCCTCCGTAAAGAA 57.457 33.333 0.00 0.00 0.00 2.52
3405 6278 7.850935 ATCATATACTCCCTCCGTAAAGAAA 57.149 36.000 0.00 0.00 0.00 2.52
3406 6279 7.850935 TCATATACTCCCTCCGTAAAGAAAT 57.149 36.000 0.00 0.00 0.00 2.17
3407 6280 8.945195 TCATATACTCCCTCCGTAAAGAAATA 57.055 34.615 0.00 0.00 0.00 1.40
3408 6281 9.543231 TCATATACTCCCTCCGTAAAGAAATAT 57.457 33.333 0.00 0.00 0.00 1.28
3412 6285 7.909485 ACTCCCTCCGTAAAGAAATATAAGA 57.091 36.000 0.00 0.00 0.00 2.10
3413 6286 7.953752 ACTCCCTCCGTAAAGAAATATAAGAG 58.046 38.462 0.00 0.00 0.00 2.85
3414 6287 6.756221 TCCCTCCGTAAAGAAATATAAGAGC 58.244 40.000 0.00 0.00 0.00 4.09
3415 6288 6.325545 TCCCTCCGTAAAGAAATATAAGAGCA 59.674 38.462 0.00 0.00 0.00 4.26
3416 6289 7.016268 TCCCTCCGTAAAGAAATATAAGAGCAT 59.984 37.037 0.00 0.00 0.00 3.79
3417 6290 7.661847 CCCTCCGTAAAGAAATATAAGAGCATT 59.338 37.037 0.00 0.00 0.00 3.56
3418 6291 9.057089 CCTCCGTAAAGAAATATAAGAGCATTT 57.943 33.333 0.00 0.00 0.00 2.32
3446 6319 5.718724 ACTACTTTAGTGACCTAAACGCT 57.281 39.130 0.00 0.00 38.05 5.07
3447 6320 6.094193 ACTACTTTAGTGACCTAAACGCTT 57.906 37.500 0.00 0.00 38.05 4.68
3448 6321 6.519382 ACTACTTTAGTGACCTAAACGCTTT 58.481 36.000 0.00 0.00 38.05 3.51
3449 6322 6.988580 ACTACTTTAGTGACCTAAACGCTTTT 59.011 34.615 0.00 0.00 38.05 2.27
3450 6323 8.143835 ACTACTTTAGTGACCTAAACGCTTTTA 58.856 33.333 0.00 0.00 38.05 1.52
3451 6324 7.974482 ACTTTAGTGACCTAAACGCTTTTAT 57.026 32.000 0.00 0.00 38.05 1.40
3453 6326 9.662947 ACTTTAGTGACCTAAACGCTTTTATAT 57.337 29.630 0.00 0.00 38.05 0.86
3468 6341 9.841295 ACGCTTTTATATATTTTTACAGAGGGA 57.159 29.630 0.00 0.00 0.00 4.20
3603 6806 1.271379 TGCTTTAGGAACAGAGGGTGC 60.271 52.381 0.00 0.00 0.00 5.01
3782 6985 2.103537 TTAGCCTCTTAACAACCGCC 57.896 50.000 0.00 0.00 0.00 6.13
3787 6990 1.302993 TCTTAACAACCGCCTGGCC 60.303 57.895 14.12 0.00 39.70 5.36
3937 7140 0.699399 TGGATTTCTTAACGGGGGCA 59.301 50.000 0.00 0.00 0.00 5.36
3995 7198 1.270839 GCTGCTCTTGTGACCCTACAA 60.271 52.381 0.00 0.00 38.17 2.41
4026 7229 2.297315 CAGGCGCTACATTATCCTCTGA 59.703 50.000 7.64 0.00 0.00 3.27
4027 7230 2.560542 AGGCGCTACATTATCCTCTGAG 59.439 50.000 7.64 0.00 0.00 3.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 3.860641 TCGCTTGATTCTCATAACAGCA 58.139 40.909 0.00 0.00 0.00 4.41
63 64 1.002900 ACATGCGACGAAAACACTTGG 60.003 47.619 0.00 0.00 0.00 3.61
93 94 1.067060 TGCACCCGAATCAGATAGACG 59.933 52.381 0.00 0.00 0.00 4.18
170 176 7.043961 TCTGACCACAGATCTATCAACATAC 57.956 40.000 0.00 0.00 46.55 2.39
244 254 2.687700 AGTGAGCATTGACAGGCTAG 57.312 50.000 3.93 0.00 41.22 3.42
253 263 5.352284 AGGATACGAGTAAAGTGAGCATTG 58.648 41.667 0.00 0.00 46.39 2.82
268 278 2.112998 CAGTGGGGGTAAAGGATACGA 58.887 52.381 0.00 0.00 46.39 3.43
270 280 1.133884 GCCAGTGGGGGTAAAGGATAC 60.134 57.143 12.15 0.00 37.04 2.24
280 295 1.815408 CGATTATTCAGCCAGTGGGGG 60.815 57.143 12.15 0.00 37.04 5.40
298 313 0.730265 GATAAAACATGCCGCCACGA 59.270 50.000 0.00 0.00 0.00 4.35
304 319 5.046910 ACTGAAACAGATAAAACATGCCG 57.953 39.130 5.76 0.00 35.18 5.69
305 320 7.147976 AGAAACTGAAACAGATAAAACATGCC 58.852 34.615 5.76 0.00 35.18 4.40
366 547 9.265901 GAGTAACACAGTATAGCATCATCAAAT 57.734 33.333 0.00 0.00 0.00 2.32
420 601 2.827322 AGGAGAGCAGAGCATAGCATAG 59.173 50.000 0.00 0.00 0.00 2.23
502 692 0.249657 GACCTAGAATGCTCCAGCGG 60.250 60.000 0.00 0.00 45.83 5.52
534 724 6.516739 CCGAAGAGGCTGATTATACTATCA 57.483 41.667 0.00 0.00 33.66 2.15
571 942 0.525761 GCATTTTGTAAGCCCGCTGA 59.474 50.000 0.00 0.00 0.00 4.26
577 948 0.525761 TCCTGCGCATTTTGTAAGCC 59.474 50.000 12.24 0.00 0.00 4.35
578 949 1.900237 CTCCTGCGCATTTTGTAAGC 58.100 50.000 12.24 0.00 0.00 3.09
579 950 1.470098 AGCTCCTGCGCATTTTGTAAG 59.530 47.619 12.24 0.00 45.42 2.34
581 952 2.394930 TAGCTCCTGCGCATTTTGTA 57.605 45.000 12.24 0.00 45.42 2.41
582 953 1.402968 CATAGCTCCTGCGCATTTTGT 59.597 47.619 12.24 0.00 45.42 2.83
583 954 1.402968 ACATAGCTCCTGCGCATTTTG 59.597 47.619 12.24 0.00 45.42 2.44
584 955 1.755179 ACATAGCTCCTGCGCATTTT 58.245 45.000 12.24 0.00 45.42 1.82
585 956 1.755179 AACATAGCTCCTGCGCATTT 58.245 45.000 12.24 0.00 45.42 2.32
586 957 1.755179 AAACATAGCTCCTGCGCATT 58.245 45.000 12.24 0.00 45.42 3.56
587 958 1.402968 CAAAACATAGCTCCTGCGCAT 59.597 47.619 12.24 0.00 45.42 4.73
589 960 0.524180 GCAAAACATAGCTCCTGCGC 60.524 55.000 0.00 0.00 45.42 6.09
591 962 1.133790 CCTGCAAAACATAGCTCCTGC 59.866 52.381 0.00 0.00 40.05 4.85
596 2754 1.272092 TGGCTCCTGCAAAACATAGCT 60.272 47.619 0.00 0.00 41.91 3.32
603 2761 3.557228 AAAAACATGGCTCCTGCAAAA 57.443 38.095 0.00 0.00 41.91 2.44
620 2778 7.777095 ACTGTAATGCTAAGTTTGGTCAAAAA 58.223 30.769 0.00 0.00 31.33 1.94
621 2779 7.341445 ACTGTAATGCTAAGTTTGGTCAAAA 57.659 32.000 0.00 0.00 31.33 2.44
622 2780 6.952773 ACTGTAATGCTAAGTTTGGTCAAA 57.047 33.333 0.00 0.00 0.00 2.69
623 2781 6.146510 CGTACTGTAATGCTAAGTTTGGTCAA 59.853 38.462 0.00 0.00 0.00 3.18
624 2782 5.636121 CGTACTGTAATGCTAAGTTTGGTCA 59.364 40.000 0.00 0.00 0.00 4.02
626 2784 4.933400 CCGTACTGTAATGCTAAGTTTGGT 59.067 41.667 0.00 0.00 0.00 3.67
627 2785 5.172934 TCCGTACTGTAATGCTAAGTTTGG 58.827 41.667 0.00 0.00 0.00 3.28
629 2787 5.346822 CGTTCCGTACTGTAATGCTAAGTTT 59.653 40.000 0.00 0.00 0.00 2.66
631 2789 4.082571 ACGTTCCGTACTGTAATGCTAAGT 60.083 41.667 0.00 0.00 38.73 2.24
632 2790 4.264614 CACGTTCCGTACTGTAATGCTAAG 59.735 45.833 0.00 0.00 38.32 2.18
633 2791 4.168014 CACGTTCCGTACTGTAATGCTAA 58.832 43.478 0.00 0.00 38.32 3.09
634 2792 3.191162 ACACGTTCCGTACTGTAATGCTA 59.809 43.478 0.00 0.00 38.32 3.49
635 2793 2.029649 ACACGTTCCGTACTGTAATGCT 60.030 45.455 0.00 0.00 38.32 3.79
637 2795 2.091588 GCACACGTTCCGTACTGTAATG 59.908 50.000 0.00 0.00 38.32 1.90
638 2796 2.029649 AGCACACGTTCCGTACTGTAAT 60.030 45.455 0.00 0.00 38.32 1.89
641 2799 0.953727 TAGCACACGTTCCGTACTGT 59.046 50.000 0.00 0.00 38.32 3.55
642 2800 1.198408 TCTAGCACACGTTCCGTACTG 59.802 52.381 0.00 0.00 38.32 2.74
645 2803 3.247442 CAAATCTAGCACACGTTCCGTA 58.753 45.455 0.00 0.00 38.32 4.02
646 2804 2.066262 CAAATCTAGCACACGTTCCGT 58.934 47.619 0.00 0.00 42.36 4.69
647 2805 2.066262 ACAAATCTAGCACACGTTCCG 58.934 47.619 0.00 0.00 0.00 4.30
648 2806 2.159627 CCACAAATCTAGCACACGTTCC 59.840 50.000 0.00 0.00 0.00 3.62
650 2808 2.846193 ACCACAAATCTAGCACACGTT 58.154 42.857 0.00 0.00 0.00 3.99
651 2809 2.543777 ACCACAAATCTAGCACACGT 57.456 45.000 0.00 0.00 0.00 4.49
652 2810 2.805671 TCAACCACAAATCTAGCACACG 59.194 45.455 0.00 0.00 0.00 4.49
654 2812 3.758023 CCATCAACCACAAATCTAGCACA 59.242 43.478 0.00 0.00 0.00 4.57
655 2813 4.009675 TCCATCAACCACAAATCTAGCAC 58.990 43.478 0.00 0.00 0.00 4.40
656 2814 4.299586 TCCATCAACCACAAATCTAGCA 57.700 40.909 0.00 0.00 0.00 3.49
658 2816 4.037208 GCCATCCATCAACCACAAATCTAG 59.963 45.833 0.00 0.00 0.00 2.43
659 2817 3.953612 GCCATCCATCAACCACAAATCTA 59.046 43.478 0.00 0.00 0.00 1.98
660 2818 2.762327 GCCATCCATCAACCACAAATCT 59.238 45.455 0.00 0.00 0.00 2.40
661 2819 2.480073 CGCCATCCATCAACCACAAATC 60.480 50.000 0.00 0.00 0.00 2.17
663 2821 0.887247 CGCCATCCATCAACCACAAA 59.113 50.000 0.00 0.00 0.00 2.83
667 2825 2.275089 CCCGCCATCCATCAACCA 59.725 61.111 0.00 0.00 0.00 3.67
668 2826 2.120909 CACCCGCCATCCATCAACC 61.121 63.158 0.00 0.00 0.00 3.77
670 2828 2.148723 AACCACCCGCCATCCATCAA 62.149 55.000 0.00 0.00 0.00 2.57
671 2829 2.148723 AAACCACCCGCCATCCATCA 62.149 55.000 0.00 0.00 0.00 3.07
672 2830 1.379843 AAACCACCCGCCATCCATC 60.380 57.895 0.00 0.00 0.00 3.51
673 2831 1.379843 GAAACCACCCGCCATCCAT 60.380 57.895 0.00 0.00 0.00 3.41
674 2832 2.034999 GAAACCACCCGCCATCCA 59.965 61.111 0.00 0.00 0.00 3.41
676 2834 0.455815 GAATGAAACCACCCGCCATC 59.544 55.000 0.00 0.00 0.00 3.51
677 2835 0.039618 AGAATGAAACCACCCGCCAT 59.960 50.000 0.00 0.00 0.00 4.40
678 2836 0.178975 AAGAATGAAACCACCCGCCA 60.179 50.000 0.00 0.00 0.00 5.69
679 2837 0.526211 GAAGAATGAAACCACCCGCC 59.474 55.000 0.00 0.00 0.00 6.13
681 2839 0.802494 CCGAAGAATGAAACCACCCG 59.198 55.000 0.00 0.00 0.00 5.28
684 2842 3.139077 AGACACCGAAGAATGAAACCAC 58.861 45.455 0.00 0.00 0.00 4.16
685 2843 3.485463 AGACACCGAAGAATGAAACCA 57.515 42.857 0.00 0.00 0.00 3.67
686 2844 4.995487 ACTAAGACACCGAAGAATGAAACC 59.005 41.667 0.00 0.00 0.00 3.27
687 2845 5.164080 CGACTAAGACACCGAAGAATGAAAC 60.164 44.000 0.00 0.00 0.00 2.78
688 2846 4.921515 CGACTAAGACACCGAAGAATGAAA 59.078 41.667 0.00 0.00 0.00 2.69
689 2847 4.022589 ACGACTAAGACACCGAAGAATGAA 60.023 41.667 0.00 0.00 0.00 2.57
690 2848 3.504906 ACGACTAAGACACCGAAGAATGA 59.495 43.478 0.00 0.00 0.00 2.57
691 2849 3.608506 CACGACTAAGACACCGAAGAATG 59.391 47.826 0.00 0.00 0.00 2.67
692 2850 3.504906 TCACGACTAAGACACCGAAGAAT 59.495 43.478 0.00 0.00 0.00 2.40
693 2851 2.880268 TCACGACTAAGACACCGAAGAA 59.120 45.455 0.00 0.00 0.00 2.52
694 2852 2.497138 TCACGACTAAGACACCGAAGA 58.503 47.619 0.00 0.00 0.00 2.87
696 2854 2.094906 CCATCACGACTAAGACACCGAA 60.095 50.000 0.00 0.00 0.00 4.30
697 2855 1.471287 CCATCACGACTAAGACACCGA 59.529 52.381 0.00 0.00 0.00 4.69
699 2857 1.134788 CCCCATCACGACTAAGACACC 60.135 57.143 0.00 0.00 0.00 4.16
703 2861 0.535335 GCACCCCATCACGACTAAGA 59.465 55.000 0.00 0.00 0.00 2.10
705 2863 1.855295 TAGCACCCCATCACGACTAA 58.145 50.000 0.00 0.00 0.00 2.24
707 2865 0.981183 TTTAGCACCCCATCACGACT 59.019 50.000 0.00 0.00 0.00 4.18
708 2866 1.940613 GATTTAGCACCCCATCACGAC 59.059 52.381 0.00 0.00 0.00 4.34
711 2869 5.193679 ACTTTAGATTTAGCACCCCATCAC 58.806 41.667 0.00 0.00 0.00 3.06
712 2870 5.450818 ACTTTAGATTTAGCACCCCATCA 57.549 39.130 0.00 0.00 0.00 3.07
713 2871 5.885912 TGAACTTTAGATTTAGCACCCCATC 59.114 40.000 0.00 0.00 0.00 3.51
715 2873 5.249780 TGAACTTTAGATTTAGCACCCCA 57.750 39.130 0.00 0.00 0.00 4.96
716 2874 6.405842 CCATTGAACTTTAGATTTAGCACCCC 60.406 42.308 0.00 0.00 0.00 4.95
717 2875 6.564328 CCATTGAACTTTAGATTTAGCACCC 58.436 40.000 0.00 0.00 0.00 4.61
718 2876 6.036470 GCCATTGAACTTTAGATTTAGCACC 58.964 40.000 0.00 0.00 0.00 5.01
720 2878 5.414454 ACGCCATTGAACTTTAGATTTAGCA 59.586 36.000 0.00 0.00 0.00 3.49
723 2881 6.811253 ACACGCCATTGAACTTTAGATTTA 57.189 33.333 0.00 0.00 0.00 1.40
724 2882 5.705609 ACACGCCATTGAACTTTAGATTT 57.294 34.783 0.00 0.00 0.00 2.17
726 2884 5.705609 AAACACGCCATTGAACTTTAGAT 57.294 34.783 0.00 0.00 0.00 1.98
727 2885 5.180492 CCTAAACACGCCATTGAACTTTAGA 59.820 40.000 0.00 0.00 0.00 2.10
728 2886 5.390613 CCTAAACACGCCATTGAACTTTAG 58.609 41.667 0.00 0.00 0.00 1.85
729 2887 4.216687 CCCTAAACACGCCATTGAACTTTA 59.783 41.667 0.00 0.00 0.00 1.85
730 2888 3.005367 CCCTAAACACGCCATTGAACTTT 59.995 43.478 0.00 0.00 0.00 2.66
731 2889 2.556622 CCCTAAACACGCCATTGAACTT 59.443 45.455 0.00 0.00 0.00 2.66
732 2890 2.159382 CCCTAAACACGCCATTGAACT 58.841 47.619 0.00 0.00 0.00 3.01
734 2892 1.883275 CACCCTAAACACGCCATTGAA 59.117 47.619 0.00 0.00 0.00 2.69
736 2894 1.243902 ACACCCTAAACACGCCATTG 58.756 50.000 0.00 0.00 0.00 2.82
737 2895 1.611491 CAACACCCTAAACACGCCATT 59.389 47.619 0.00 0.00 0.00 3.16
738 2896 1.243902 CAACACCCTAAACACGCCAT 58.756 50.000 0.00 0.00 0.00 4.40
739 2897 1.448922 GCAACACCCTAAACACGCCA 61.449 55.000 0.00 0.00 0.00 5.69
740 2898 1.284715 GCAACACCCTAAACACGCC 59.715 57.895 0.00 0.00 0.00 5.68
741 2899 1.284715 GGCAACACCCTAAACACGC 59.715 57.895 0.00 0.00 0.00 5.34
751 2909 0.251341 AATCAGACCAGGGCAACACC 60.251 55.000 0.00 0.00 39.74 4.16
752 2910 1.270550 CAAATCAGACCAGGGCAACAC 59.729 52.381 0.00 0.00 39.74 3.32
753 2911 1.133513 ACAAATCAGACCAGGGCAACA 60.134 47.619 0.00 0.00 39.74 3.33
754 2912 1.620822 ACAAATCAGACCAGGGCAAC 58.379 50.000 0.00 0.00 0.00 4.17
755 2913 2.238521 GAACAAATCAGACCAGGGCAA 58.761 47.619 0.00 0.00 0.00 4.52
756 2914 1.144708 TGAACAAATCAGACCAGGGCA 59.855 47.619 0.00 0.00 33.04 5.36
757 2915 1.909700 TGAACAAATCAGACCAGGGC 58.090 50.000 0.00 0.00 33.04 5.19
758 2916 5.476599 TGTTATTGAACAAATCAGACCAGGG 59.523 40.000 0.00 0.00 42.66 4.45
759 2917 6.573664 TGTTATTGAACAAATCAGACCAGG 57.426 37.500 0.00 0.00 42.66 4.45
771 2929 7.759489 AGAGTAAAGCCATTGTTATTGAACA 57.241 32.000 0.00 0.00 43.94 3.18
772 2930 7.542130 CCAAGAGTAAAGCCATTGTTATTGAAC 59.458 37.037 0.00 0.00 36.00 3.18
773 2931 7.232534 ACCAAGAGTAAAGCCATTGTTATTGAA 59.767 33.333 0.00 0.00 0.00 2.69
774 2932 6.719370 ACCAAGAGTAAAGCCATTGTTATTGA 59.281 34.615 0.00 0.00 0.00 2.57
775 2933 6.808212 CACCAAGAGTAAAGCCATTGTTATTG 59.192 38.462 0.00 0.00 0.00 1.90
776 2934 6.719370 TCACCAAGAGTAAAGCCATTGTTATT 59.281 34.615 0.00 0.00 0.00 1.40
777 2935 6.245408 TCACCAAGAGTAAAGCCATTGTTAT 58.755 36.000 0.00 0.00 0.00 1.89
778 2936 5.626142 TCACCAAGAGTAAAGCCATTGTTA 58.374 37.500 0.00 0.00 0.00 2.41
779 2937 4.469657 TCACCAAGAGTAAAGCCATTGTT 58.530 39.130 0.00 0.00 0.00 2.83
780 2938 4.074970 CTCACCAAGAGTAAAGCCATTGT 58.925 43.478 0.00 0.00 39.62 2.71
781 2939 4.691860 CTCACCAAGAGTAAAGCCATTG 57.308 45.455 0.00 0.00 39.62 2.82
791 2949 5.364157 ACTTCTAAAGTGACTCACCAAGAGT 59.636 40.000 5.51 0.00 46.89 3.24
792 2950 5.848406 ACTTCTAAAGTGACTCACCAAGAG 58.152 41.667 5.51 0.00 44.60 2.85
793 2951 5.221461 GGACTTCTAAAGTGACTCACCAAGA 60.221 44.000 5.51 3.99 43.03 3.02
794 2952 4.991687 GGACTTCTAAAGTGACTCACCAAG 59.008 45.833 5.51 1.75 43.03 3.61
795 2953 4.500887 CGGACTTCTAAAGTGACTCACCAA 60.501 45.833 5.51 0.00 43.03 3.67
796 2954 3.005472 CGGACTTCTAAAGTGACTCACCA 59.995 47.826 5.51 0.00 43.03 4.17
797 2955 3.576648 CGGACTTCTAAAGTGACTCACC 58.423 50.000 5.51 0.00 43.03 4.02
798 2956 2.987821 GCGGACTTCTAAAGTGACTCAC 59.012 50.000 0.38 0.38 43.03 3.51
799 2957 2.626266 TGCGGACTTCTAAAGTGACTCA 59.374 45.455 0.00 0.00 43.03 3.41
800 2958 3.299340 TGCGGACTTCTAAAGTGACTC 57.701 47.619 0.00 0.00 43.03 3.36
801 2959 3.746045 TTGCGGACTTCTAAAGTGACT 57.254 42.857 0.00 0.00 43.03 3.41
802 2960 3.364068 GCTTTGCGGACTTCTAAAGTGAC 60.364 47.826 0.00 0.00 43.03 3.67
803 2961 2.806244 GCTTTGCGGACTTCTAAAGTGA 59.194 45.455 0.00 0.00 43.03 3.41
804 2962 2.808543 AGCTTTGCGGACTTCTAAAGTG 59.191 45.455 0.00 0.00 43.03 3.16
805 2963 2.808543 CAGCTTTGCGGACTTCTAAAGT 59.191 45.455 0.00 0.00 46.38 2.66
806 2964 2.413371 GCAGCTTTGCGGACTTCTAAAG 60.413 50.000 0.00 0.00 34.22 1.85
807 2965 1.535462 GCAGCTTTGCGGACTTCTAAA 59.465 47.619 0.00 0.00 0.00 1.85
808 2966 1.156736 GCAGCTTTGCGGACTTCTAA 58.843 50.000 0.00 0.00 0.00 2.10
809 2967 0.034756 TGCAGCTTTGCGGACTTCTA 59.965 50.000 0.00 0.00 37.69 2.10
810 2968 0.607489 ATGCAGCTTTGCGGACTTCT 60.607 50.000 0.00 0.00 37.69 2.85
811 2969 1.086696 TATGCAGCTTTGCGGACTTC 58.913 50.000 0.00 0.00 37.69 3.01
812 2970 1.755179 ATATGCAGCTTTGCGGACTT 58.245 45.000 0.00 0.00 37.69 3.01
813 2971 1.755179 AATATGCAGCTTTGCGGACT 58.245 45.000 0.00 0.00 37.69 3.85
814 2972 2.603173 GCTAATATGCAGCTTTGCGGAC 60.603 50.000 0.00 0.00 36.07 4.79
815 2973 1.603802 GCTAATATGCAGCTTTGCGGA 59.396 47.619 0.00 0.00 36.07 5.54
816 2974 1.661178 CGCTAATATGCAGCTTTGCGG 60.661 52.381 22.68 10.92 40.94 5.69
817 2975 1.261354 TCGCTAATATGCAGCTTTGCG 59.739 47.619 23.69 23.69 44.19 4.85
818 2976 3.231965 CATCGCTAATATGCAGCTTTGC 58.768 45.455 7.71 0.00 36.86 3.68
819 2977 3.499537 TCCATCGCTAATATGCAGCTTTG 59.500 43.478 7.71 5.37 36.86 2.77
820 2978 3.743521 TCCATCGCTAATATGCAGCTTT 58.256 40.909 7.71 0.00 36.86 3.51
821 2979 3.407424 TCCATCGCTAATATGCAGCTT 57.593 42.857 7.71 0.00 36.86 3.74
822 2980 3.407424 TTCCATCGCTAATATGCAGCT 57.593 42.857 7.71 0.00 36.86 4.24
823 2981 3.181503 CCATTCCATCGCTAATATGCAGC 60.182 47.826 0.00 0.41 35.61 5.25
824 2982 4.256110 TCCATTCCATCGCTAATATGCAG 58.744 43.478 0.00 0.00 0.00 4.41
825 2983 4.256110 CTCCATTCCATCGCTAATATGCA 58.744 43.478 0.00 0.00 0.00 3.96
826 2984 3.064545 GCTCCATTCCATCGCTAATATGC 59.935 47.826 0.00 0.00 0.00 3.14
827 2985 4.331992 CAGCTCCATTCCATCGCTAATATG 59.668 45.833 0.00 0.00 0.00 1.78
828 2986 4.511527 CAGCTCCATTCCATCGCTAATAT 58.488 43.478 0.00 0.00 0.00 1.28
829 2987 3.866066 GCAGCTCCATTCCATCGCTAATA 60.866 47.826 0.00 0.00 0.00 0.98
830 2988 2.775890 CAGCTCCATTCCATCGCTAAT 58.224 47.619 0.00 0.00 0.00 1.73
831 2989 1.811558 GCAGCTCCATTCCATCGCTAA 60.812 52.381 0.00 0.00 0.00 3.09
832 2990 0.250038 GCAGCTCCATTCCATCGCTA 60.250 55.000 0.00 0.00 0.00 4.26
833 2991 1.525535 GCAGCTCCATTCCATCGCT 60.526 57.895 0.00 0.00 0.00 4.93
834 2992 1.099879 AAGCAGCTCCATTCCATCGC 61.100 55.000 0.00 0.00 0.00 4.58
835 2993 0.942962 GAAGCAGCTCCATTCCATCG 59.057 55.000 0.00 0.00 0.00 3.84
836 2994 0.942962 CGAAGCAGCTCCATTCCATC 59.057 55.000 0.00 0.00 0.00 3.51
837 2995 0.543277 TCGAAGCAGCTCCATTCCAT 59.457 50.000 0.00 0.00 0.00 3.41
838 2996 0.324614 TTCGAAGCAGCTCCATTCCA 59.675 50.000 0.00 0.00 0.00 3.53
839 2997 0.729690 GTTCGAAGCAGCTCCATTCC 59.270 55.000 0.00 0.00 0.00 3.01
840 2998 1.663135 GAGTTCGAAGCAGCTCCATTC 59.337 52.381 0.00 0.00 0.00 2.67
841 2999 1.731720 GAGTTCGAAGCAGCTCCATT 58.268 50.000 0.00 0.00 0.00 3.16
842 3000 0.459237 CGAGTTCGAAGCAGCTCCAT 60.459 55.000 0.00 0.00 43.02 3.41
843 3001 1.080501 CGAGTTCGAAGCAGCTCCA 60.081 57.895 0.00 0.00 43.02 3.86
844 3002 1.213013 TCGAGTTCGAAGCAGCTCC 59.787 57.895 0.00 0.00 46.30 4.70
845 3003 4.870305 TCGAGTTCGAAGCAGCTC 57.130 55.556 0.00 0.25 46.30 4.09
854 3012 1.137825 GCCTCCTCACTCGAGTTCG 59.862 63.158 17.26 9.61 37.59 3.95
855 3013 1.137825 CGCCTCCTCACTCGAGTTC 59.862 63.158 17.26 0.00 37.59 3.01
856 3014 2.344203 CCGCCTCCTCACTCGAGTT 61.344 63.158 17.26 0.00 37.59 3.01
857 3015 2.752238 CCGCCTCCTCACTCGAGT 60.752 66.667 13.58 13.58 37.59 4.18
858 3016 2.752238 ACCGCCTCCTCACTCGAG 60.752 66.667 11.84 11.84 39.16 4.04
859 3017 2.750637 GACCGCCTCCTCACTCGA 60.751 66.667 0.00 0.00 0.00 4.04
860 3018 3.827898 GGACCGCCTCCTCACTCG 61.828 72.222 0.00 0.00 35.89 4.18
861 3019 2.022240 GATGGACCGCCTCCTCACTC 62.022 65.000 0.00 0.00 40.26 3.51
862 3020 2.039624 ATGGACCGCCTCCTCACT 59.960 61.111 0.00 0.00 40.26 3.41
863 3021 1.617947 AAGATGGACCGCCTCCTCAC 61.618 60.000 0.00 0.00 40.26 3.51
864 3022 1.306141 AAGATGGACCGCCTCCTCA 60.306 57.895 0.00 0.00 40.26 3.86
865 3023 1.045911 AGAAGATGGACCGCCTCCTC 61.046 60.000 0.00 0.00 40.26 3.71
866 3024 0.618968 AAGAAGATGGACCGCCTCCT 60.619 55.000 0.00 0.00 40.26 3.69
867 3025 0.253327 AAAGAAGATGGACCGCCTCC 59.747 55.000 0.00 0.00 39.97 4.30
868 3026 2.115343 AAAAGAAGATGGACCGCCTC 57.885 50.000 0.00 0.00 34.31 4.70
869 3027 2.040412 AGAAAAAGAAGATGGACCGCCT 59.960 45.455 0.00 0.00 34.31 5.52
870 3028 2.437413 AGAAAAAGAAGATGGACCGCC 58.563 47.619 0.00 0.00 0.00 6.13
871 3029 4.229876 CAAAGAAAAAGAAGATGGACCGC 58.770 43.478 0.00 0.00 0.00 5.68
872 3030 4.278419 ACCAAAGAAAAAGAAGATGGACCG 59.722 41.667 0.00 0.00 0.00 4.79
873 3031 5.509670 CCACCAAAGAAAAAGAAGATGGACC 60.510 44.000 0.00 0.00 0.00 4.46
874 3032 5.532557 CCACCAAAGAAAAAGAAGATGGAC 58.467 41.667 0.00 0.00 0.00 4.02
875 3033 4.039124 GCCACCAAAGAAAAAGAAGATGGA 59.961 41.667 0.00 0.00 0.00 3.41
876 3034 4.039609 AGCCACCAAAGAAAAAGAAGATGG 59.960 41.667 0.00 0.00 0.00 3.51
877 3035 4.986659 CAGCCACCAAAGAAAAAGAAGATG 59.013 41.667 0.00 0.00 0.00 2.90
878 3036 4.502087 GCAGCCACCAAAGAAAAAGAAGAT 60.502 41.667 0.00 0.00 0.00 2.40
879 3037 3.181476 GCAGCCACCAAAGAAAAAGAAGA 60.181 43.478 0.00 0.00 0.00 2.87
880 3038 3.126073 GCAGCCACCAAAGAAAAAGAAG 58.874 45.455 0.00 0.00 0.00 2.85
881 3039 2.158971 GGCAGCCACCAAAGAAAAAGAA 60.159 45.455 6.55 0.00 0.00 2.52
882 3040 1.412343 GGCAGCCACCAAAGAAAAAGA 59.588 47.619 6.55 0.00 0.00 2.52
883 3041 1.869342 CGGCAGCCACCAAAGAAAAAG 60.869 52.381 13.30 0.00 0.00 2.27
884 3042 0.103937 CGGCAGCCACCAAAGAAAAA 59.896 50.000 13.30 0.00 0.00 1.94
885 3043 1.040339 ACGGCAGCCACCAAAGAAAA 61.040 50.000 13.30 0.00 0.00 2.29
886 3044 1.454847 ACGGCAGCCACCAAAGAAA 60.455 52.632 13.30 0.00 0.00 2.52
887 3045 2.192861 CACGGCAGCCACCAAAGAA 61.193 57.895 13.30 0.00 0.00 2.52
888 3046 2.594303 CACGGCAGCCACCAAAGA 60.594 61.111 13.30 0.00 0.00 2.52
889 3047 3.673484 CCACGGCAGCCACCAAAG 61.673 66.667 13.30 0.00 0.00 2.77
890 3048 4.514585 ACCACGGCAGCCACCAAA 62.515 61.111 13.30 0.00 0.00 3.28
902 3060 3.041940 GTCTTCGGCACCACCACG 61.042 66.667 0.00 0.00 39.03 4.94
910 3068 1.299850 CTGTCACGTGTCTTCGGCA 60.300 57.895 16.51 0.00 34.94 5.69
912 3070 0.997226 CGTCTGTCACGTGTCTTCGG 60.997 60.000 16.51 9.81 44.07 4.30
922 3080 0.529773 TTGACACCAGCGTCTGTCAC 60.530 55.000 11.49 0.00 45.05 3.67
924 3082 1.560860 GCTTGACACCAGCGTCTGTC 61.561 60.000 6.19 4.31 37.83 3.51
925 3083 1.595382 GCTTGACACCAGCGTCTGT 60.595 57.895 6.19 0.00 36.82 3.41
926 3084 0.882042 AAGCTTGACACCAGCGTCTG 60.882 55.000 0.00 0.52 36.82 3.51
927 3085 0.679505 TAAGCTTGACACCAGCGTCT 59.320 50.000 9.86 0.00 36.82 4.18
928 3086 1.508632 TTAAGCTTGACACCAGCGTC 58.491 50.000 9.86 0.00 36.40 5.19
929 3087 1.961793 TTTAAGCTTGACACCAGCGT 58.038 45.000 9.86 0.00 0.00 5.07
930 3088 3.236816 CATTTTAAGCTTGACACCAGCG 58.763 45.455 9.86 0.00 0.00 5.18
933 3091 7.446931 TGATAGAACATTTTAAGCTTGACACCA 59.553 33.333 9.86 0.00 0.00 4.17
934 3092 7.816640 TGATAGAACATTTTAAGCTTGACACC 58.183 34.615 9.86 0.00 0.00 4.16
935 3093 9.495754 GATGATAGAACATTTTAAGCTTGACAC 57.504 33.333 9.86 0.00 0.00 3.67
936 3094 9.453572 AGATGATAGAACATTTTAAGCTTGACA 57.546 29.630 9.86 0.00 0.00 3.58
956 3114 8.400947 CCGACATGATAAAACTGAAAAGATGAT 58.599 33.333 0.00 0.00 0.00 2.45
958 3116 7.530010 ACCGACATGATAAAACTGAAAAGATG 58.470 34.615 0.00 0.00 0.00 2.90
960 3118 6.148811 GGACCGACATGATAAAACTGAAAAGA 59.851 38.462 0.00 0.00 0.00 2.52
961 3119 6.149474 AGGACCGACATGATAAAACTGAAAAG 59.851 38.462 0.00 0.00 0.00 2.27
962 3120 6.001460 AGGACCGACATGATAAAACTGAAAA 58.999 36.000 0.00 0.00 0.00 2.29
964 3122 5.160607 AGGACCGACATGATAAAACTGAA 57.839 39.130 0.00 0.00 0.00 3.02
965 3123 4.819105 AGGACCGACATGATAAAACTGA 57.181 40.909 0.00 0.00 0.00 3.41
966 3124 5.872617 TGTAAGGACCGACATGATAAAACTG 59.127 40.000 0.00 0.00 0.00 3.16
967 3125 6.045072 TGTAAGGACCGACATGATAAAACT 57.955 37.500 0.00 0.00 0.00 2.66
968 3126 6.920569 ATGTAAGGACCGACATGATAAAAC 57.079 37.500 12.72 0.00 34.98 2.43
983 3141 5.970317 TCGAAGTACAAGTCATGTAAGGA 57.030 39.130 0.00 0.00 45.81 3.36
985 3143 7.639162 AAGTTCGAAGTACAAGTCATGTAAG 57.361 36.000 5.80 0.00 45.81 2.34
986 3144 7.324375 CGTAAGTTCGAAGTACAAGTCATGTAA 59.676 37.037 5.80 0.00 45.81 2.41
987 3145 6.798476 CGTAAGTTCGAAGTACAAGTCATGTA 59.202 38.462 5.80 0.00 43.63 2.29
988 3146 5.628193 CGTAAGTTCGAAGTACAAGTCATGT 59.372 40.000 5.80 0.00 46.36 3.21
989 3147 5.854866 TCGTAAGTTCGAAGTACAAGTCATG 59.145 40.000 5.80 0.00 36.89 3.07
990 3148 6.005583 TCGTAAGTTCGAAGTACAAGTCAT 57.994 37.500 5.80 0.00 36.89 3.06
991 3149 5.422666 TCGTAAGTTCGAAGTACAAGTCA 57.577 39.130 5.80 0.00 36.89 3.41
992 3150 9.708222 TTATATCGTAAGTTCGAAGTACAAGTC 57.292 33.333 5.80 0.00 42.99 3.01
1037 3464 3.428870 CGTCAGATCTACTGCACGTTTTT 59.571 43.478 0.00 0.00 45.38 1.94
1038 3465 2.987149 CGTCAGATCTACTGCACGTTTT 59.013 45.455 0.00 0.00 45.38 2.43
1039 3466 2.228103 TCGTCAGATCTACTGCACGTTT 59.772 45.455 0.00 0.00 45.38 3.60
1041 3468 1.398739 CTCGTCAGATCTACTGCACGT 59.601 52.381 0.00 0.00 45.38 4.49
1042 3469 1.268285 CCTCGTCAGATCTACTGCACG 60.268 57.143 0.00 0.00 45.38 5.34
1045 3513 0.031449 GCCCTCGTCAGATCTACTGC 59.969 60.000 0.00 0.00 45.38 4.40
1070 3547 2.299326 ACAGCTTTGATGCTTTCCCT 57.701 45.000 0.00 0.00 41.98 4.20
1109 3586 0.876777 TCGCGTTTTTCTTCTGCCGA 60.877 50.000 5.77 0.00 0.00 5.54
1119 3596 0.883370 GGGAGGTGAGTCGCGTTTTT 60.883 55.000 5.77 0.00 0.00 1.94
1329 3834 2.358300 GGAGAAAGGGAGGGGGAATTTC 60.358 54.545 0.00 0.00 0.00 2.17
1334 3839 2.459710 GGGAGAAAGGGAGGGGGA 59.540 66.667 0.00 0.00 0.00 4.81
1345 3850 3.399952 AGGAAAGATAGACGGGGAGAA 57.600 47.619 0.00 0.00 0.00 2.87
1359 3867 5.120363 GTCGTTAGTTAGCTCCAAAGGAAAG 59.880 44.000 0.00 0.00 0.00 2.62
1416 3925 1.236616 TGGAACGCCATCAAGCACAG 61.237 55.000 0.00 0.00 39.92 3.66
1544 4053 5.747342 ACACTCCCGGCAAAATTTACTATA 58.253 37.500 0.00 0.00 0.00 1.31
1545 4054 4.595986 ACACTCCCGGCAAAATTTACTAT 58.404 39.130 0.00 0.00 0.00 2.12
1569 4078 8.448008 TCATAAAGATAAAATCATAGCCCCACT 58.552 33.333 0.00 0.00 0.00 4.00
1570 4079 8.635765 TCATAAAGATAAAATCATAGCCCCAC 57.364 34.615 0.00 0.00 0.00 4.61
1571 4080 8.448008 ACTCATAAAGATAAAATCATAGCCCCA 58.552 33.333 0.00 0.00 0.00 4.96
1572 4081 8.870075 ACTCATAAAGATAAAATCATAGCCCC 57.130 34.615 0.00 0.00 0.00 5.80
1605 4114 2.878406 GACAAAAGCTGCTGTGGTTAGA 59.122 45.455 1.35 0.00 0.00 2.10
1614 4123 5.535753 AGTAAAATTGGACAAAAGCTGCT 57.464 34.783 0.00 0.00 0.00 4.24
1635 4144 8.539770 AGTGATGTATGAAACACAACTAGAAG 57.460 34.615 0.00 0.00 42.09 2.85
1638 4147 7.492669 CCCTAGTGATGTATGAAACACAACTAG 59.507 40.741 15.54 15.54 45.93 2.57
1644 4153 6.407202 ACTTCCCTAGTGATGTATGAAACAC 58.593 40.000 0.00 0.00 36.92 3.32
1659 4168 8.480133 AACTGGACTACATATTACTTCCCTAG 57.520 38.462 0.00 0.00 0.00 3.02
1665 4176 9.042008 CGCAAATAACTGGACTACATATTACTT 57.958 33.333 0.00 0.00 0.00 2.24
1690 4201 8.633075 AATTGAGTTATACAAAATGGATTGCG 57.367 30.769 0.00 0.00 33.52 4.85
1734 4245 9.388506 CTCCACATACTCATTTTTATCTTCAGT 57.611 33.333 0.00 0.00 0.00 3.41
1787 4298 1.214589 CTGCCTGCAATCAGCCAAC 59.785 57.895 2.42 0.00 44.83 3.77
1803 4314 4.141846 ACACCTAGACCAGTGATATTGCTG 60.142 45.833 4.15 1.76 37.43 4.41
1863 4374 3.132824 TCGAGAAATCTATGGCAGCAGAA 59.867 43.478 5.77 0.00 0.00 3.02
1864 4375 2.695147 TCGAGAAATCTATGGCAGCAGA 59.305 45.455 4.28 4.28 0.00 4.26
1865 4376 3.103447 TCGAGAAATCTATGGCAGCAG 57.897 47.619 0.00 0.00 0.00 4.24
1866 4377 3.541996 TTCGAGAAATCTATGGCAGCA 57.458 42.857 0.00 0.00 0.00 4.41
1867 4378 5.233988 AGTATTCGAGAAATCTATGGCAGC 58.766 41.667 0.00 0.00 0.00 5.25
1868 4379 6.703607 ACAAGTATTCGAGAAATCTATGGCAG 59.296 38.462 0.00 0.00 0.00 4.85
1869 4380 6.479990 CACAAGTATTCGAGAAATCTATGGCA 59.520 38.462 0.00 0.00 0.00 4.92
1870 4381 6.564873 GCACAAGTATTCGAGAAATCTATGGC 60.565 42.308 0.00 0.00 0.00 4.40
1871 4382 6.703607 AGCACAAGTATTCGAGAAATCTATGG 59.296 38.462 0.00 0.00 0.00 2.74
1872 4383 7.706281 AGCACAAGTATTCGAGAAATCTATG 57.294 36.000 0.00 0.00 0.00 2.23
1873 4384 7.868415 GGTAGCACAAGTATTCGAGAAATCTAT 59.132 37.037 0.00 0.00 0.00 1.98
1874 4385 7.147966 TGGTAGCACAAGTATTCGAGAAATCTA 60.148 37.037 0.00 0.00 0.00 1.98
1875 4386 6.043411 GGTAGCACAAGTATTCGAGAAATCT 58.957 40.000 0.00 0.00 0.00 2.40
1876 4387 5.810587 TGGTAGCACAAGTATTCGAGAAATC 59.189 40.000 0.00 0.00 0.00 2.17
1877 4388 5.730550 TGGTAGCACAAGTATTCGAGAAAT 58.269 37.500 0.00 0.00 0.00 2.17
1878 4389 5.142061 TGGTAGCACAAGTATTCGAGAAA 57.858 39.130 0.00 0.00 0.00 2.52
1879 4390 4.794278 TGGTAGCACAAGTATTCGAGAA 57.206 40.909 0.00 0.00 0.00 2.87
1880 4391 5.826208 TCTATGGTAGCACAAGTATTCGAGA 59.174 40.000 0.00 0.00 0.00 4.04
1881 4392 6.073327 TCTATGGTAGCACAAGTATTCGAG 57.927 41.667 0.00 0.00 0.00 4.04
1882 4393 6.040504 ACATCTATGGTAGCACAAGTATTCGA 59.959 38.462 0.00 0.00 0.00 3.71
1883 4394 6.216569 ACATCTATGGTAGCACAAGTATTCG 58.783 40.000 0.00 0.00 0.00 3.34
1884 4395 6.363626 CGACATCTATGGTAGCACAAGTATTC 59.636 42.308 0.00 0.00 0.00 1.75
1885 4396 6.183360 ACGACATCTATGGTAGCACAAGTATT 60.183 38.462 0.00 0.00 0.00 1.89
1886 4397 5.302059 ACGACATCTATGGTAGCACAAGTAT 59.698 40.000 0.00 0.00 0.00 2.12
1887 4398 4.643334 ACGACATCTATGGTAGCACAAGTA 59.357 41.667 0.00 0.00 0.00 2.24
1888 4399 3.447586 ACGACATCTATGGTAGCACAAGT 59.552 43.478 0.00 0.00 0.00 3.16
1889 4400 4.046938 ACGACATCTATGGTAGCACAAG 57.953 45.455 0.00 0.00 0.00 3.16
1916 4427 2.164422 GGGCAAGAACTAGAATGGCAAC 59.836 50.000 0.00 0.00 39.84 4.17
1937 4448 8.424731 GCAATTTTGTCAAACCTTAACTATTCG 58.575 33.333 0.00 0.00 0.00 3.34
1941 4452 6.913673 GTCGCAATTTTGTCAAACCTTAACTA 59.086 34.615 0.00 0.00 0.00 2.24
2023 4534 6.408320 CCCATTCAATGCCCTTCAATTCATTA 60.408 38.462 0.00 0.00 0.00 1.90
2049 4561 4.156008 ACAAGCTAAATTTCCCACATCGTC 59.844 41.667 0.00 0.00 0.00 4.20
2058 4570 7.389607 TGGTCTACTGTAACAAGCTAAATTTCC 59.610 37.037 0.00 0.00 0.00 3.13
2080 4592 9.559958 CACTTTTCTTTCACACATTATATGGTC 57.440 33.333 0.00 0.00 33.60 4.02
2081 4593 8.028938 GCACTTTTCTTTCACACATTATATGGT 58.971 33.333 0.00 0.00 33.60 3.55
2082 4594 8.028354 TGCACTTTTCTTTCACACATTATATGG 58.972 33.333 0.00 0.00 33.60 2.74
2083 4595 8.969121 TGCACTTTTCTTTCACACATTATATG 57.031 30.769 0.00 0.00 0.00 1.78
2084 4596 9.630098 CTTGCACTTTTCTTTCACACATTATAT 57.370 29.630 0.00 0.00 0.00 0.86
2085 4597 8.081633 CCTTGCACTTTTCTTTCACACATTATA 58.918 33.333 0.00 0.00 0.00 0.98
2086 4598 6.925165 CCTTGCACTTTTCTTTCACACATTAT 59.075 34.615 0.00 0.00 0.00 1.28
2087 4599 6.272318 CCTTGCACTTTTCTTTCACACATTA 58.728 36.000 0.00 0.00 0.00 1.90
2088 4600 5.111293 CCTTGCACTTTTCTTTCACACATT 58.889 37.500 0.00 0.00 0.00 2.71
2089 4601 4.685924 CCTTGCACTTTTCTTTCACACAT 58.314 39.130 0.00 0.00 0.00 3.21
2090 4602 3.675775 GCCTTGCACTTTTCTTTCACACA 60.676 43.478 0.00 0.00 0.00 3.72
2091 4603 2.860136 GCCTTGCACTTTTCTTTCACAC 59.140 45.455 0.00 0.00 0.00 3.82
2092 4604 2.760092 AGCCTTGCACTTTTCTTTCACA 59.240 40.909 0.00 0.00 0.00 3.58
2093 4605 3.443099 AGCCTTGCACTTTTCTTTCAC 57.557 42.857 0.00 0.00 0.00 3.18
2094 4606 4.460263 TCTAGCCTTGCACTTTTCTTTCA 58.540 39.130 0.00 0.00 0.00 2.69
2095 4607 5.215903 GTTCTAGCCTTGCACTTTTCTTTC 58.784 41.667 0.00 0.00 0.00 2.62
2096 4608 4.644685 TGTTCTAGCCTTGCACTTTTCTTT 59.355 37.500 0.00 0.00 0.00 2.52
2097 4609 4.207165 TGTTCTAGCCTTGCACTTTTCTT 58.793 39.130 0.00 0.00 0.00 2.52
2098 4610 3.817647 CTGTTCTAGCCTTGCACTTTTCT 59.182 43.478 0.00 0.00 0.00 2.52
2154 4666 5.061179 TCCCAAGTCACTAAAACTGTTAGC 58.939 41.667 0.00 0.00 0.00 3.09
2202 4717 0.386352 CATTTGAGGTGCACACGCTG 60.386 55.000 20.43 4.17 39.64 5.18
2237 4752 6.071672 TGCAAATTATGGCTTAAAGCTGTACA 60.072 34.615 0.00 0.00 41.99 2.90
2305 5002 7.512130 AGATCTTATTGCAACCTGATGTATCA 58.488 34.615 0.00 0.00 35.16 2.15
2306 5003 7.658982 TGAGATCTTATTGCAACCTGATGTATC 59.341 37.037 0.00 4.60 0.00 2.24
2312 5009 5.188434 CCTTGAGATCTTATTGCAACCTGA 58.812 41.667 0.00 0.00 0.00 3.86
2350 5047 8.051535 ACCAATCAGAATGTCAGTAGATCAAAT 58.948 33.333 0.00 0.00 37.40 2.32
2496 5193 2.231820 CGGACCAAACAACGGAGAC 58.768 57.895 0.00 0.00 0.00 3.36
2513 5210 0.474184 ATATGAAGACAAGGGGGCCG 59.526 55.000 0.00 0.00 0.00 6.13
2576 5273 7.061094 GCAGAATCTAATTGACGAAAAGGTTTG 59.939 37.037 0.00 0.00 0.00 2.93
2603 5300 3.665745 AAGCTGAACCGCAAATTGATT 57.334 38.095 0.00 0.00 0.00 2.57
2615 5312 7.653311 AGATTTGGATTGTAAACAAAGCTGAAC 59.347 33.333 6.37 0.00 45.61 3.18
2644 5341 0.608640 AGCTAACCTGGAACCGTCAG 59.391 55.000 0.00 0.00 0.00 3.51
2724 5421 1.056103 CTTGTCACGAGCAAGACGAG 58.944 55.000 10.00 0.00 44.29 4.18
2756 5453 9.627123 TGTTCCCTTCTTCCAAAATAGTATATG 57.373 33.333 0.00 0.00 0.00 1.78
2761 5458 6.183361 ACTCTGTTCCCTTCTTCCAAAATAGT 60.183 38.462 0.00 0.00 0.00 2.12
2781 5478 5.505173 AAGGTCAACAATTCAACACTCTG 57.495 39.130 0.00 0.00 0.00 3.35
2800 5498 3.902881 AGATCCAAGCACTGACTAAGG 57.097 47.619 0.00 0.00 0.00 2.69
2821 5519 0.750850 GGTAACTGCGCATCCCTCTA 59.249 55.000 12.24 0.00 0.00 2.43
3336 6209 4.040339 AGAAAATAACCTTTGCACTTGGGG 59.960 41.667 0.00 0.00 0.00 4.96
3337 6210 4.990426 CAGAAAATAACCTTTGCACTTGGG 59.010 41.667 0.00 0.00 0.00 4.12
3338 6211 5.600696 ACAGAAAATAACCTTTGCACTTGG 58.399 37.500 0.00 0.00 0.00 3.61
3339 6212 6.363357 GCTACAGAAAATAACCTTTGCACTTG 59.637 38.462 0.00 0.00 0.00 3.16
3340 6213 6.447162 GCTACAGAAAATAACCTTTGCACTT 58.553 36.000 0.00 0.00 0.00 3.16
3341 6214 5.334879 CGCTACAGAAAATAACCTTTGCACT 60.335 40.000 0.00 0.00 0.00 4.40
3389 6262 6.869388 GCTCTTATATTTCTTTACGGAGGGAG 59.131 42.308 0.00 0.00 0.00 4.30
3390 6263 6.325545 TGCTCTTATATTTCTTTACGGAGGGA 59.674 38.462 0.00 0.00 0.00 4.20
3391 6264 6.522054 TGCTCTTATATTTCTTTACGGAGGG 58.478 40.000 0.00 0.00 0.00 4.30
3392 6265 8.608844 AATGCTCTTATATTTCTTTACGGAGG 57.391 34.615 0.00 0.00 0.00 4.30
3424 6297 5.718724 AGCGTTTAGGTCACTAAAGTAGT 57.281 39.130 0.53 0.00 46.69 2.73
3425 6298 7.417496 AAAAGCGTTTAGGTCACTAAAGTAG 57.583 36.000 0.00 0.00 46.69 2.57
3427 6300 7.974482 ATAAAAGCGTTTAGGTCACTAAAGT 57.026 32.000 10.55 0.00 46.69 2.66
3442 6315 9.841295 TCCCTCTGTAAAAATATATAAAAGCGT 57.159 29.630 0.00 0.00 0.00 5.07
3457 6330 9.499479 CGTACTTATATCTACTCCCTCTGTAAA 57.501 37.037 0.00 0.00 0.00 2.01
3458 6331 8.654997 ACGTACTTATATCTACTCCCTCTGTAA 58.345 37.037 0.00 0.00 0.00 2.41
3459 6332 8.200024 ACGTACTTATATCTACTCCCTCTGTA 57.800 38.462 0.00 0.00 0.00 2.74
3460 6333 7.077050 ACGTACTTATATCTACTCCCTCTGT 57.923 40.000 0.00 0.00 0.00 3.41
3516 6399 1.832883 TTGCTTGTTCTGGTGTGTGT 58.167 45.000 0.00 0.00 0.00 3.72
3517 6400 2.937469 TTTGCTTGTTCTGGTGTGTG 57.063 45.000 0.00 0.00 0.00 3.82
3518 6401 3.784338 CATTTTGCTTGTTCTGGTGTGT 58.216 40.909 0.00 0.00 0.00 3.72
3519 6402 2.540931 GCATTTTGCTTGTTCTGGTGTG 59.459 45.455 0.00 0.00 40.96 3.82
3618 6821 4.569943 TGACATGCTACTTCTCCAAGTTC 58.430 43.478 0.00 0.00 40.16 3.01
3739 6942 6.899393 AGAAATTGTGATGTTTCTGCCTAA 57.101 33.333 0.04 0.00 41.67 2.69
3782 6985 0.967380 AGGAATTCTTTGCCGGCCAG 60.967 55.000 26.77 20.20 0.00 4.85
3787 6990 3.503748 AGAAGTTCAGGAATTCTTTGCCG 59.496 43.478 5.50 0.00 28.99 5.69
3791 6994 9.674068 GTATAGGAAGAAGTTCAGGAATTCTTT 57.326 33.333 5.61 0.00 41.95 2.52
3937 7140 5.240183 CACAGATAAAATCCGAGATGCCATT 59.760 40.000 0.00 0.00 0.00 3.16
3975 7178 0.321671 TGTAGGGTCACAAGAGCAGC 59.678 55.000 0.00 0.00 43.97 5.25


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.