>input_sequence_39105
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-------------------------------------CTTCG--------------------------------------
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-----------------------------------------------------------------------AACTTACGA
TATAAATGAGTATTACGATGAAAAAAAAC-----------------------------------------GTGCAGTAGA
TCTGACGAGGGCATA---------CTAGGGAAAGCATCAAAGCTGTACACCGCGCAACGGGGAAATCGGCAGAAGAAAAA
CGCGACTCAC----------------------------CTCCCTCTGCGGCAGCCCGCACTCCGCCGCCGCGCGCGATCC
AATGGAGGGGGTGCAGGCGGCCGTGACGGCGCACCTGGACCAGGTGTCGGGCCTCGTCCAGGCGCTCTCCTCCGAGCTCC
GCAGCGGGATCGGCCCCGCCGCCGACAGCCTGCTCGCCTTCGTCCGCGCCGTCGACTGGACGGTACCCCGCGAGAAATTC
CCCCTCCCTTTC---TCCCCGTCTATCTTTCCTTTGGAGCTAACTAACGACTCGC-GTCGCCGCGTGTCCAGGAGCCATG
GCTGCTGTGCTTGATGGCGTTCCACGCGGGCCTGCTGCTGACGGCCGTCGGGCTGAGGAGGAATGCCAACCTGCAGTTCT
TCTTCTTGTTTCTTGCTTGTGAGTTCTCATCTCTGGGACGGGACAGACACAGTATAGTAAATTTTGCCGGGAGTGTAAGT
GGGGCTATGATTTTATCTTTATGAGTTCCAACTTCTAACCACAGCAGCTTTTGTCCAATTTTACTTCTAGTTGTGTTTCA
TACATCAC--TAGGGAAGTAATATGTAGTCCAGTTATTTGCGCAATCCATTTTGTATAACTCAATTCTTGGTATACGATT
GAAAACTGAAGATAAAAATGAGTATGTGGAGGTTTTCAATTAGGGCATGATCCACTAGTTGGCTGATTGCAGGCAGCAAT
ATCACTGGTCTAGGTGTATCTCGCTACCTTCGGCACATAACTGAATGCCAGCTTTCTGCTGCCATAGATTTCTCGAATAC
TTGTGCTACCATAGATGTCGTATTGTGTTGCCATTCTAGTTCTTGCCCGAATAGTTAAGGTTTGACAAAATTGCGACATT
GCCTTATCTAAGATTCGATGCCTTGGCACGAAGATTAAACATTCAGAATATCGTAATGAATTG-AAGGGCATTGAATGGG
GACGATGTGGGAAATTTAGCTTGTTACAGTAGACCATATAATGTGTGAAAGAAAAGTGCAAGGCTAGAACAGCTTATAGT
ATGACGCAGAGAAAGCATGCTATAAG---CTAACAGTTTTAGTGACTTGGGAAAAATTCCGTGGAATTGTAGTTGTCAGC
GTGTGCACCTCAAATGTGGTTTAATTTTTTTT------------------------------------------------
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------------------------------------------------------GTACAGCTTTAAGCCATAATTTGCAA
CACAAGTAATTTCTAGTGTTTTGAGAAGGACCAAATGAAGCTGATACATCAGGTTGCAATAAGATCTCAAGGGCAGGCAC
CTGGCCATTTGATCTACTGACATTCTGATTGGTTCCACGGTTTCCTGTTTGCAGATTCAGGGGTGTATCTAGCTGAAAAG
ATAAACATCTACCTAGCAGAGCACTGGAAGATCTTCGCCAGCCGGAATTACTTTGACCGCGCTGGAGTTTTCGTCTCCGT
TGTTTGGTCCGGCCCCCTTGTCTTCATATCTATCGTCACCGTGGTTAGTAAAAGACCTTACACGTTCCGAAGCAAACCTT
TTCGTCAATTAGATTCTGCAATCAATTTGCGGTTCAGCTTTGTTTACAATCCAAATCTTTCTGACGGTTCCAGGTTAGCT
CTCTTATTACACTGTGCCAGTTAATGGTGAAATGGAAGAGAGCAGAACTAAGGCATCGGGCTCGTCTTGCTCGTGACAAG
GAGGAATGATTTCATATACTATTTTGGAAGAAGGGAAC-AGAGTGTTGAATTGTTGACCTTAGTCAGTGCTTGGATCTTA
GAGGGATGCGCAGTTACCAAGTACTGTAAATGCTTCACCTGCTATCAGCATAGCATGTA----ATCTTCAGCTGCTCTTT
CTTAGTAGTGTATTTCTATTATTCTCTGGGGTCATCAACTTCGGTAATGGTTAGGTATGCAGAAAACTAGATAGATGTTG
TATCTGGCTCCATCCTGTTTTATTTGTAGCT-------------------------------------------------
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------------------------------------------AAAACCACACATCGATAC--------------------
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>chr1A_1_TraesCS1A01G270500
GATTTGCTGTTATGAGAATCAAGCGAAAGTAAGAGAAAAAGAAATGCTGACAAGATGCCCGGTCCAAGTGTTTTCGTCGC
ATGTTGGTGGTTCCGTCTATCTGATTCGGGTGCACAGCAGCTCATTTGTAAG--AAAAAACTC---AAGACACTTCCCTG
ATTTGCTGTGTAATAGTATGTTGATAGATCTGTGGTCAGAAACTACACTTGGCTTACATGGTTTCATGTTTAAGCCGGC-
---TTGCTTGCTGCTAGCCTGTCAATGCTCACTTTACTCGTATCCTTTA-----CCCCCACTGGCTGAATAATCGTGGCG
GCAT--GTTTTATCTGTTTCAGTTTCTTGTGCTATGCCTAGAAATAATACAGTAGGA---AAATA---------------
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------------------------------------------------------------------ATTTGATGATGCTA
TACTGTGTTACTCCGTGCGTAAATAAGATCGTGGTTGATGCTATGCTATGCTCTGCTCTCCTTGTCTGTCTGCCGGCGGA
GTGTCTGGCGTGGTGCTCTTGAGGCGTGCACTCTGTTCG---------CCACCGCTGGAGCATTCTAGGTCTGCTTCCCT
CTCTGAT-------------------------------------------------------------------------
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----------------------------AGTATAATCAGCCTCTTCGGCAGTTTCTTTGCATCAGCGGGCTTACAAAATG
CG------------------------------------------------------------------------------
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-----------------------------CAGGAGCTATGTTTTGCAGGAGCCATGTTTTTTGACCAAACTTAGCATTAC
AGTACGGAACGTGTGCTAGATTTGTGGTTGATGGATGGCGGGTGGTTTCATTCTTCGGTGTCTTAGTCGTGATGGGGTGC
TAAATCTAAAGTTCAATGGCGTGTTTAGGGTGTTGCCCTGGTCTGATTTGTTCAATAACAATGGCTTTACTCTTGGTGAG
TCACTTTAGAAGTCCGCAAAGCTGCATATTAGCGATGGAATGGAGCTGCTTCGAACTCGAGTGAGGAGGCGGTCCATCTT
CTTTTTCTTTGGTGGCTGCCGTGGTGGTGCCGAAGACACGTGACAGACGCTGGTGTCAAGCTTAAAATGTTCTATCATCT
TTTCAGTTTTATCATGTCGGTCCTTACATGACTTGTACTTCG--------------------------------------
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-----------------------------------------------------------------------AACTTACGA
TATAAATGAGTATTACGATGAAAAAAAAC-----------------------------------------GTGCAGTAGA
TCTGACGAGGGCATA---------CTAGGGAAAGCATCAAAGCTGTACACCGCGCAACGGGGAAATCGGCAGAAGAAAAA
CGCGACTCAC----------------------------CTCCCTCTGCGGCAGCCCGCACTCCGCCGCCGCGCGCGATCC
AATGGAGGGGGTGCAGGCGGCCGTGACGGCGCACCTGGACCAGGTGTCGGGCCTCGTCCAGGCGCTCTCCTCCGAGCTCC
GCAGCGGGATCGGCCCCGCCGCCGACAGCCTGCTCGCCTTCGTCCGCGCCGTCGACTGGACGGTACCCCGCGAGAAATTC
CCCCTCCCTTTC---TCCCCGTCTATCTTTCCTTTGGAGCTAACTAACGACTCGC-GTCGCCGCGTGTCCAGGAGCCATG
GCTGCTGTGCTTGATGGCGTTCCACGCGGGCCTGCTGCTGACGGCCGTCGGGCTGAGGAGGAATGCCAACCTGCAGTTCT
TCTTCTTGTTTCTTGCTTGTGAGTTCTCATCTCTGGGACGGGACAGACACAGTATAGTAAATTTTGCCGGGAGTGTAAGT
GGGGCTATGATTTTATCTTTATGAGTTCCAACTTCTAACCACAGCAGCTTTTGTCCAATTTTACTTCTAGTTGTGTTTCA
TACATCAC--TAGGGAAGTAATATGTAGTCCAGTTATTTGCGCAATCCATTTTGTATAACTCAATTCTTGGTATACGATT
GAAAACTGAAGATAAAAATGAGTATGTGGAGGTTTTCAATTAGGGCATGATCCACTAGTTGGCTGATTGCAGGCAGCAAT
ATCACTGGTCTAGGTGTATCTCGCTACCTTCGGCACATAACTGAATGCCAGCTTTCTGCTGCCATAGATTTCTCGAATAC
TTGTGCTACCATAGATGTCGTATTGTGTTGCCATTCTAGTTCTTGCCCGAATAGTTAAGGTTTGACAAAATTGCGACATT
GCCTTATCTAAGATTCGATGCCTTGGCACGAAGATTAAACATTCAGAATATCGTAATGAATTG-AAGGGCATTGAATGGG
GACGATGTGGGAAATTTAGCTTGTTACAGTAGACCATATAATGTGTGAAAGAAAAGTGCAAGGCTAGAACAGCTTATAGT
ATGACGCAGAGAAAGCATGCTATAAG---CTAACAGTTTTAGTGACTTGGGAAAAATTCCGTGGAATTGTAGTTGTCAGC
GTGTGCACCTCAAATGTGGTTTAATTTTTTTT------------------------------------------------
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------------------------------------------------------GTACAGCTTTAAGCCATAATTTGCAA
CACAAGTAATTTCTAGTGTTTTGAGAAGGACCAAATGAAGCTGATACATCAGGTTGCAATAAGATCTCAAGGGCAGGCAC
CTGGCCATTTGATCTACTGACATTCTGATTGGTTCCACGGTTTCCTGTTTGCAGATTCAGGGGTGTATCTAGCTGAAAAG
ATAAACATCTACCTAGCAGAGCACTGGAAGATCTTCGCCAGCCGGAATTACTTTGACCGCGCTGGAGTTTTCGTCTCCGT
TGTTTGGTCCGGCCCCCTTGTCTTCATATCTATCGTCACCGTGGTTAGTAAAAGACCTTACACGTTCCGAAGCAAACCTT
TTCGTCAATTAGATTCTGCAATCAATTTGCGGTTCAGCTTTGTTTACAATCCAAATCTTTCTGACGGTTCCAGGTTAGCT
CTCTTATTACACTGTGCCAGTTAATGGTGAAATGGAAGAGAGCAGAACTAAGGCATCGGGCTCGTCTTGCTCGTGACAAG
GAGGAATGATTTCATATACTATTTTGGAAGAAGGGAAC-AGAGTGTTGAATTGTTGACCTTAGTCAGTGCTTGGATCTTA
GAGGGATGCGCAGTTACCAAGTACTGTAAATGCTTCACCTGCTATCAGCATAGCATGTA----ATCTTCAGCTGCTCTTT
CTTAGTAGTGTATTTCTATTATTCTCTGGGGTCATCAACTTCGGTAATGGTTAGGTATGCAGAAAACTAGATAGATGTTG
TATCTGGCTCCATCCTGTTTTATTTGTAGCT-------------------------------------------------
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------------------------------------------AAAACCACACATCGATACATNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCAAGTGCAAAGGTTATTTTCTGTAGCGAG
ATGAGTGATAAATATCATATACTCCCTCCGTAAAGAAATATAAGAGCATTTAGATCACTACTTTAGTGACCTAAACGCTT
TTATATATTTTTACAGAGGGAGTAGATATAAGTA-------CGTATAATATAAGAAGCTCAGAATAGG---AGAAAAAAC
ACACACCAGAACAAGCAAAATGCAGGGAGGTCTTTACTACTACTTCTGTTCCTAAATGTTTA------------------
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------------------------------------------------AACTGC--------------TTTAGGAACAGA
GGGTGCAATTCCTAAAACAGGAACTTGGAGAAGTAGCATGTCAACTTGACCTTTTATTATTTCCTTTCAGCACTGATGGA
CAAATATGTGCATCAGTGGTTATTGCCAGAATTTTACATATTACAAGCGAAACAAATTTGTTTAGGCAGAAACATCACAA
TTTCTTTAGCCTCTTAACAACCGCCTGGCCGGCAAAGAATTCCTGAACTTCTTCCTATACAAGAAAAAACCTAGGGCACC
GAGCAAGGGCCAAGATGTTACCACAGCAATGTAAGCCAGCCACCAGACCGACCTCCCCTGGGATCGAATGAGCTGGTTAA
TGGATTTCTTAACGGGGGCAATGGCATCTCGGATTTTATCTGTGGAGAGCTCTTCTCGCTGCTCTTGTGACCCTACAAGG
CCTTGGGCAGGCGCTACATTATCCTCTGAG
>chr1B_1
GATTCGCTGTTACGAGAATCAAGCGAAAGTAAGAAAAAAGGAGATGCTGACAAGATGCCCGGTGCAAGTGTTTTCGTCGC
ATGTTGGTGGTTCAGTCTATCTGATTCGGGTGCACAGCAGCTCATTTGTAAG--AAAAAACTCAAGAAGACACTTCCCTG
ATTTGCTGTGTAATACTATGTTGATAGATCTGTGGTCAGAAACTACACTTGGTTTACATGGTTTCATGTTTAAGCAGCCG
GCTTTGCTTGCTGTTAGCCTGTTGATGTTCACTTTACGCATAT-CCTTCACCCCACCCCACTGGCTGAATAACCGTGGTA
GCATATGTTTTATTTGTTTCAGTTGCTTGTGCTATGCCTAGAAATAATACAGCAGAAAATAAATA---------------
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------------------------------------------------------------------GTTTGATGATGCTA
TACCGTGTTACTCCGTGCGTAAATAAGATCGTGGTTGATGGTATGCTATGCTCTGCTCTCCTTGTCTGTCTGCCGGCGGA
TTGTCTGGCGTGGTGCTCTTGAGGCGTGCACTCTGTTCG---------CCATCGCTGGAGCATTCTAGGTCTGCTTC---
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>chr1D_7
CTGG------TATGAGAATCAAGCGAAAGTAAGAGAAAAAGAAATGCTGACAAGATGCCCGGTGAAAGTGTTTTCGTCGC
AGGTTGGT---TCAGTCTATCTGATTCGGGTACACAGCAGCTCATTTGTAAGGAAAAAAACTCAAGAAGACGCTTCCCTG
ATTTGCTGTGTAA---TATGTTGATAGATCTGTGGTCAGAAACTACACTTGGATTACATGGTTTCATGTTTAAGCAGCCG
GCTT-GCTTGCTGTTAGCCTGTTAATGCTCACTTTACGCATAT-CTTTT-----ACCCCACTGGCAGCATAG--------
------GTTTTATCTGCTTCAGTTTTTTGTGCTGTGCCTGGAAATAATCGAAAATACTCCCTCCGTTCCTAAATATAAGT
CTTTGTAGAGCTTTCATTATGAACACATACGGATGTATATAGATGTATATAGATGTATTTTAAGTGTAGATTCATTCATT
TTGCTCCGTATGTAGTCCACCTAGTGGAATCTCTACAAAGACTTGTATTTAGCAACGGAGGGAGTGGTTTGATGATGCTA
TACTGTGTTACTCCGTGTGTAAATAACATGGTGGTTG-----ATGCTATGCTATGCTCTCGTTGTCTGTCTGCCGGCGGA
GTGACTGGCGTGGTGCTCTTGAGGAGTGCACTCTGCTCTGGCTTCCCTCCATCGCTGTAGCATTCTAAGGTTTGACCAAG
TTTCTAGAAAAAAAACATATACAGCTAGAATATTAAAATACATATCTTTAGACACATCACAAGACGTACTTTCATATTGT
ATATATTTGGTATGCTAGATATAATTAGATTTCTCTATAAACTTGATCAAAGTTTGTATAATTTGACTTTTCAAAAAATC
TATATGCACTACATTACAAAACGGAGGGAGTATAATCATCCTCTTCGGCAGTTTCTTTGCACCAGCGCTATGTTTTTGTT
CAAGCTGCCCTAATTGACAGTTTCTTTTTCGCACGGCCGTACTTTTTGAGGCAATATTTTGACGAATTTGACCTTAAACT
GTTTTTGAAAATACTTCACACCGCTGATCCTTTTGTGCAGCGCCCGACTACAAGATGTTGCACTCAACTGTGCAACTCGT
TACAGCTAGGCGCTGCACAGTGTAGTGCAGTGCCTAGTCGTCGGGCGCTGCACAGTTGCGGCGTCTGAGTGTTAGGTCAG
TGGCGGAGCTTGAGCCAAATATATGGGGGGCCATGGGCTGGAGGGGGGACAAACCTAGCTATTTCAGCTGTTTAAAGTGG
AAAATAGGCCTAATACAAAGAAATATATACAAAGAAAATTTGTGAGGGGGGGGGGGCATGGCCCAGGTTGCCCCTCATGA
AGCTCGGTCACTGTGTTAGGCGCTGCACAGTAGAGTGCAGCGCCTTGCTGTCAGACGCTGCACATTAGGGGTTAGCTGGG
TGAAAAAAAAATCAGTTTAGCTAATGAAATAGGTCATACTAACTGATACCTAACCCATCATCTGGTCTACGGCTCCCCCC
CTCCCGCGTCGCTCCCGCTTAGGCGACTCGGGTGGGTCTCCAACCCTAGCCGCCCCCGCTCCCGAATCCACCTTCCCTCA
CCCCGCCGCTGCCGCCGGAGGACGCCGTCGGGATGCGCCCGGGGGCCGACGGCGGTGGCGGGGATCCTCCTCTCTCACGG
GTGGTGAGGAGCCCTTGTGCGTGCGGAGGCGCGGCAGATCTGGCGGCGGCGGTGGCTGGCNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGCGGCGGCGGGCGGCGGCT
TGCCTGGCTCGGGCAGCGGTGACTTATACTGTGGCAGCGCGTCATCCGGCTTTGGATCGGCGGCGGCGTGGAAGGCCTGG
TGGGCGGCTTGGCGGCACCTTCGGTCAGATCTTTTCTGGCCGGTGCAGCCGGCGGTGGTGGTCATCTCTTCCGTCAGATG
TGGTCGCCCTGAGGCTGGGTTTTCGGATCTCCAGATCCGTCATCTAGTACCGGCTGTGAGTCGGAGAGACATAGTTGCCA
GTGAAAACCGAGCCGGCGGCGGGCGATGGCGGAGTTCTGCGTCGTTACCTTGATGAAGGCATCGTCATGTGATTACTGTC
GACCCACTCGTACTGCTCTAGGGGAAACCCTAGGATTTGGTCTTCCAGATCGGACGATGACGGCACTGCGGTGTCCTTTC
TCTCTTAGGAGCATCATTTGTGAAGCAGCGCTGGAAGTCAGAGGCAGGAGGTGGAGTGGCTTCGTCTTCCACGGAGCTTC
AGTGGAGATGTCAAGTCATGCCTGACCGACAGGTGCTATGCTTTGTCATGCCTGGTCGGCAGGTGCTACGCACGACTTCA
AGCTGTGTCGGCTGGTGGTACTTGGCGGCATGGTGCTGAGGTGTACCGGTGGCGACCGTGACGTGCTCAGCAGTTCGCGC
GCAGGGAGGTGGTGCC----------------------------------------------------------------
--------------------------------------------------------------------------------
----------GTTGGACGCTGTGGTGGCGTCGAAGACAGCTAGACCGGGCAAAGTTGATGCGTCAATACAGCTCTGAAGA
TGGAGTGATGGCAGTTGGCAGCGGCGGCCTCTGAGAGCGCGCCGGACCGGTGTGTGCCCCATACCCGGCAAGTGGCTTGG
TTGGGCCCTCAGGTCTTAGATGTTAGCCTTGGCTGTGAGATTTGTGGTATTAGGCCCGGACTATAAGCATCCCTTCATCA
ACTGGATAGGAGTTGCGACAGATGTTGCCTAGACGGTGTCTTCAGACTTACTGTTGTATTTCTTTGTAAGGTCTTTTGTG
AATAATTAATAAAGTGGCTGCATGCATCGCCCAGATACAGAGGCAGGGGGTCTTCCTTCTTTTCTAAAAGAAACTAATGA
AATAGGTTTGTCTTGAGGTCAAATTTATGCCTTTTGCCTTTTTTTGACATCCATGGGGATGCTCTTCCCAGTACAGTAGA
TCTGACGAGGGCATATACTTGGTACTTGGGAAAGCATCAAAGCTGTACACCGCGCAACGGGGAAAACGGCAGAAGGAAAA
CGCGACCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCGGCAACCCGCACTCCGCCGCCGCGCGCGATCC
AATGGAGGAGGTGCAGGCGGCCGTGACGGCGCACCTGGACCAGGTGTCAGGCCTCGTGCAGGCGCTCTCCTCCGAGCTCC
GCAGCGGGATCGGCCCCGCCGCCGACAGCCTGCTCGCCTTCGTCCGCGCCGTCGACTGGACGGTACCCCGCGAAAAAT--
---CTCCCTCTC---TCCCCGTCTATTTTTCCTTCGGAGCTAACTAACGATTCGC-GTCGCCGCGTGTTCAGGAGCCATG
GCTGGTGTGCTTGATGGCATTCCACGCGGGCCTGCTGCTGACGGCCGTCGGGCTGAGGAGGAATGCCAACCTGCAGTTCT
TCTTCTTGTTTCTTGCTTGTGAGTTCTCATCTCTGGGACAGGACAGACACAGACTTGTAAATTTTACCGGGAGTGTG---
---GCTATGA-------TTTATGAGTTCCAACTACTAACCAAGGCAGCTTTTGTCCAATTTTGGCTTTACTAATGTTTCA
TATCACTATATAGGAGAGCAGTATGTAGTCCAGTTATTCGTGCAGTCCGTTTTGTATAACTCAATTCTTAGTATA-GATT
GAAACCTGAAGATAAAAATGAGTATGTGGAGGTTTTCAATTAGGGCATGATCCACTAATTGGCTCATTGCAGGTAGCAAT
ATCGCTGGTCTAGGTGTATCTCGCTACCTTCGGCACATAACTGAATGCCAGCT---------------------------
TTGTGCTACCATAGATGTCGTATTGTATTGCCGCTCTAGTTCTTGCCACAAGAGTTAAGGTTTGACAAAATTGTGACATT
GCCTTATCTAAGATTCGATGCCTTGGCACAAAGATTAAACATTCAGAATATCGCAATGAATTG-AAGGGCATTGAATGGG
AACGATGTGAGAAATTCAGCTTGTTACAGTA-------------------GAAAAGTGCTAGGCTAGAACAGCTTATAGT
ATGACGCAGAGAAAGCATGCTATAAACTACTAACAGTTTTAATTACTTGGGAAAAATTCCGTGGAACTGTAGTTGTTAGC
ATGTGCTCCTCAACTTTGCTTTAATTTTTAGC------------------------------------------------
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------------------------------------------------------GTACAGCTTTAAGCCATAATTTGCAA
CACAAGTAATTTCTAGTGTTTTGAGAAGGACCAAATGAAGCCAATACAGCAGGTTGCAATAAGATCTCTAGGGCAGGCAC
CTGGCCTTTTGATCTACTGACATTCTGATTGGTTCCACGGTTTCCTGTTTGCAGATTCAGGGGTGTATCTAGCTGAAAAG
ATAAACATCTACCTAGCAGAGCACTGGAAGATCTTCGCCAGCCGGAATTACTTTGACCGTGCTGGAGTTTTCATCTCCGT
TGTTTGGTCTGGCCCCCTTGTCTTCATATCTATCGTCACCGTGGTTAGTAAAAGACCTTATATGTTCCGAAGTAAACCTT
TTCGTCTATTAGAGTCTGCGATCAATTTGCGATTCAGCTTTGTTTACAATCCAAATCTTTTTGACGGTTCCAGGTTAGCT
CTCTTATGACACTATGTCAGTTAATGGTGAAATGGAAGAGAGCAGAACTAAGGCATCGGGGTCGTCTTGCTCGTGACAAA
GAGGAATGATTTAATATCCTATTTTGGAAGAAGGGAAGTAGAGTGTTGAATTGTTGATCTTAGTCAGTGCTTGGATCTCA
GAGGGATGCGCAGTTACCAAGTACTGTAAATGCTTCATCTGCTATCAGCATAGCATGTACTCCATCTTCAGCTGCTCTTT
CTTAGTAGTGTATTTCTATTATTCCCTGGGGTCATCAACTTGGGTAATGGTTAGGTATACGGAAAACTAGATAGATGTTG
TATCTGGCTCCATCCTGTTTTATTTGTAGCTAACCCGACGATGTAAGTTTGTTTGATATCTG------------------
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---------------------------GTATGATACATCTGCAAAACCACACATCGATACATTTTTT-CCCTTTTTT---
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------------------------------------------------------ATGCAAAGGTTATTTTCTGTAGCGAA
ATGAGTGCTAAATATCATATGGATA-------------------------------------------------------
--------------------------------TA-------AGTATAATATAAGAAGCTCCGAATAGA---AAAAATA--
--ACACCAGAACAAGCAAAATGCAGGGAGGTCTTTACTACTACTTCTGTTCCTAAATGTTTA------------------
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------------------------------------------------AACTGCCAGATCGTCTTATATTTAGGAACAAA
GGGTGTAATTCCTAAAACATAAACTTGGAGGAGTAGCATGCCAACTTGACCTTTTATTATTTCCTTTCAGCACTGATGGA
CAAATATGTGCATCAGTGGTTATTGCCAGAATTTTACATATTACAAGCGAAACAAATTTGTGTAGGCAGAAACATCACAA
TTTCTTTAGCCTCTTAACAACCGCTTGGCTGGCGAAGAATTCCTGAACTTCTTCCTATACAAGAAAAAACCTAGGGTACC
GAGCAAGGGCCAAGATGTTACCACAGCAATGTAAGCCAGCCACCAGACCGACCTCCCCTGGGATCGAATGAGCTGGTTAA
TGGATTTCTTAACGGGGGCGATGGCATCTCGGATTTTATCTGTGGAGAGCTCTTCTCTCTGCTCTTGTGACCCTACAGGG
CCTTGGGCAGACGGTTCATTATCCTCTG--
>chr1B_1044
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----------------------------------------------------------------------GTACAGTAGA
TCTGACGAGGGCATG---------CTTGGGAAAGCATCAAAGCTGTACACCGCGCAACGGGGAAAACGGCAGAAGGAAGA
CGCGACTCGC----------------------------CTCCCTCTGCGGCAGCCAGCGCTCCGCCGCCGCGCGCGATCC
AATGGAGGAGGTGCAGGCGGCATTCACGGCGCACCTGGACCAGGTGTCGGGCCTCGTCCAGGCGCTCTCCTCCGAGCTCC
GCAGCGGGATCGGCCCCGCCGCCGACAGCCTGCTCGCCTTCGTCCGCGCCGTCGACTGGACGGTACCCCGCGAAAAATCC
CCCCTCCCTGTCTGTTCCCCCTGTATTTTTCCTTTGGAACTAACTAACGGCTCGCGGTCGCCGCGTGTCCAGGAGCCATG
GCTGATGTGCTTGATGGCGTTCCACGCGGGCCTGCTGCTGACGGCCGTCGGGCTGAGGAGGAATGCCAACCTGCAGTTCT
TCTTCTTGTTTCTTGCTTGTGAGTTCTCATCTCTGGGACGGGACAGACC------AGTAATTTTTGCCGGGAGTGGA---
---GCTATGATTTTATCTTTATGAGTTCCAACTACTAACCACGGCAGCTTTTGTCCAATTTTAGTTTTAGTTATGTTTCA
TACATCAAC--AGCAGAGTAATATGTAGTCCAGCTATTTGTGCAATCCGTTTTGTATAACTCAATTCTTAGTATAAGATT
GAAACCTGAAGATAAAGGTGAGTATGTGGAGGTTTTCAATTAGGGCATGATCCACTGATTGGCTGATTGCAGTTAGCAAT
ATCACTGCTCTAGGTGTGTCTCGCTACCTTTGGCACATAACTGAATGCCAGCT---------------------------
TCGTGCTACCATAGATGTCGTATTGTATTGCCATTCTAGTTCTTGCCAGAAGAGTTAAGGTTTGACAAAATTGCGACATT
GCCTTGTCTAATATTCGATGCCTTGGCACAAAGATTAAACATTCAGAATATCGCAATGAATTTTAAGGGCGTTGAATGGG
AACGATGTGAGAAATTTAGCTTGCTAC---A-------------------GAAAAGTGCAAGGCTAGAACAGCTTATAGT
ATGATGCAGAGAAAGCATGCTATAAA---CTAACAGTTTTAATTACTTGGGAAAAAATATGTGGAATTGTAGTTGTTAGC
GTGTGCTCCTCAAATTTGCTTTAAATTTCTTATTTTGTACAGCTTTAAGCCATTTGGGCGAGACAACATAAAAACTAGCC
ATTCTTTTGGGTATGAAACCCATTTGGGCGAGAGTAGTACCAGGATGGGTGACCTCCTGGGAAGTCCTCGTGAAAGGGTT
TCATATCTAGCCTACCCCAACTTGTTTGGGATAAAAGGCTTCGTAAGTAAGTAAGTACAACTTTAAGCCATAATTTGCAA
CACAAGTAATTTCTAGTGTTTTGAGAAGGACCAAATGAAGCCAATACAGCAGGTTGCAACAAGATCTCCAGGGCAGGCAC
CTGGCCTTTCGATCTACAGACATTCTAATTGGTTCCACGGTTTCCTGTTTGCAGATTCAGGGGTGTATCTAGCTGAAAAG
ATAAACATCTACCTAGCAGAGCACTGGAAGGTCTTCGCCAGCCGGAATTACTTTGACCGTGCTGGAGTTTTCATCTCCGT
TGTTTGGTCTGGCCCCCTTGTCTTCATATCTATCGTCACCGTGGTTAGTAAAAGATCTTATATGTTCCGAAGTAAACCTT
TTCGTCTATTAGAGTCTGC------TTTGCGATTCAGCTTTGTTTACAATCCAAATCTTTTTGATGGTTCCAGGTTAGCT
CTCTTATTACACTATGTCAGTTAATGGTGAAATGGAAGAGAGCAGAACTAAGGCATCGGGTTCGTCTTGCTCATGACAAA
GAGGAGTGATTTAATATCCTG-----------------------------TTGTTGATCTTAGTCAGTGCTTGGATCTCA
GAGGGATGCGCAGTTACCAAGTACTGTAAATCCTTCATCTGCTATCAGCATAGCATGTA----ATCTTCAGCTGCTCTTT
CTTAGTAGTGTATTTCTATTATTCTCTGGGGTCATCAACTTCGGTAATGGTTAGGTATGCAGAAGACTAGATAGATGTTG
TATCTGGCTCCATCCT---TTATTTGTAGCTAACCTGACGATGTAAGTTTGTTCGATATTTGGTACTCCCTCCGTCCGAA
AATACTTGTCATCAAAATGGATAAAAATGGATGGATCTAGAATTAATATACATCTAGGTACATCTCCTTTTATTCATTTT
GATGACAAGTATTTTCGGACAGAGGGAGTATGATACATCTGTGAAACCACACATCGATACATTTCCCCCCCTTTTTT---
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------------------------------------------------------GTGCAAAGGTTATTTTCTGTAGCGAG
ATGAGTTATAAATATCGTATAGATA-------------------------------------------------------
--------------------------------TATAAGTAGAGTATAATATAAGAAGCTCGGAATAGGAAGAAAAAAA--
--ACACCAGAACAAGCAAAATACGTGGAGGTCTTTCCTACTACTTCTGTTCCTAAATGTTTATGCCTCCTTTGGTTTGGA
GGAATTATGCAGGAATTCTATAGGATGGGATTTCTGTAAGAATTCCTTTACAGCCGTTTGGTTTGTAGGAATAGAATCAT
ATTCATATGAACGAATTCTTCCTATCCTTCACATTTCATTGGAAAATAAAAATTAGCCTAGACTCGATGAAAAAAATCCT
ATGATGTGAACCAAAGAGCATCTCTTTTTCTATTCCTATTCATAGGATTTGAGATGCATGTCATCTCATTTTCTATGACT
TCCCTATTCCTATGATTTTCCTACCCTATGAACCAAAGGAGGCCTTAAAACTGCCAGAACGTCTTATATTTAGGAACAGA
GGGTGTAATTCCTAAAACAGAAACTTGGAGAAGTAGCATGTCAACTTGACCTTTTATTATTTCCTTTTAGCACTGATGGA
CAAATATGTGCATCAGTGGTTATTGCCAGAATTTTACATATTACAAGCGAAACAAATTTGTGTAGGCAGAAATATCACAA
TTTCTTTAGCCTCTTAACAACCGCTTGGCTGGCGAAGAATTCCTGAACTTCTTCCTATACAAGAAAAAACCTATGGCACC
GAGCAAGGGCCAAGATGTTACCACAGCAATGTACGCCAGCCACCAGACCGACCTCCCCTGGGATCGAATGAGCTGGTTAA
TGGATTTCTTAACGGGGGCGATGGCATCTCGGATTTTATCTGTGGAGAGCTCTTCTCTCTGCTCTTGTGACCCTACAGGG
CCTTGGGCAGACGGTACATTATCCTCTG--
>SNPs
----S----------------------------------------------------------S----------------
-------------S------------------------------------------------------------------
---------------S------------------------------------S----------------------S-S--
-------------S--------S--------------S-S---S----S-----S-----------------S-----SS
----------------------------------------------------S--S------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------S-------------
----------------------------------------S---------------------------------------
---------------------------------------------------S-------------------------SSS
S-SSS-S-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------S----------------------S-----SSS-SSSSSSS-S
-S------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------S------S----SSSSSS-SSSSSSSSSS-SS-S-SSSSS-SS--SS
--SSSS-SSS-SSS-SSSS-S---SS-SSSSS-SSSS-S--SSSSSSSSSSS-SS-S---S-S-SS--SSS-SSSS-S--
SS-SSSSSSS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS-S---SS--S-------S-S--------SS-SSSSSSS--SSSSS-S-S--S-S--SSSSS--S-S-SSS
-SSSSSSS-SSSSS-SSSSSS-SSSSSSSSSSSS-SS-SSSS--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------S-S--
S---SS-SS--S--SS-S-S---SSS-SS-------------------------------------------S-------
--------------------------S--------------------------------------S---------S----
--------S-----------------------------------------------------------------------
--------S-----------------------------------------------------------------------
-------------------------------------------------------------------------S----S-
---------S----------------S-----------------------------------------------------
----S---------------------------------------------------------------------------
----------------------------------------------------SS-----------------------SSS
SSS------------------------------S--------S--------------------S--S-----S-------
-------S------SS------------------------S-------S--------------------S-----S----
----S----------------------------------------------------S---------------S------
-----------------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSS
--------------------------S--------------------S---S----------------------------
-----------------------------S-----------------------S--------------------------
S--------S---------------------SSSSSSSSSSSSSSSSSSS------------------------------
-------------------------S---------------S-S--------------------------------S---
------S--------S--S------------S------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------SS-----S-------------------S-----------
------S-------------------------------------------------------------------------
-----------------------------------------------------------S------------S-------
---------S--------------------------------------------------S-S---------S-------
------S------S-----S-----------S----------------------------S-------------------
-------------S--S-------------------------------------------S------------------S
------------S----S-------------------S-------------------S--------------------S-
-------------------------------------S------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------SSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------
---------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S------------------S-----------S-----SS
SS------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----S--------------S-----------------------------------------------------------
-------------------------------------------------------------S------------------
------------------------S----S---S----------------------------------------------
--------------------------------------------------------------------------------
-------------------S-------------------------------------S-------------------S--
----------S--S--------------SS
>forward_953
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------TCTTTGCATCAGCGGGCTTA-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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------------------------------
>reverse_4717
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------CAGC
GTGTGCACCTCAAATG----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------
>forward_2854
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------ATGGCGGGTGGTTTCATTCT--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------
>reverse_5210
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------CGGCCCCCTTGTCTTCATAT---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------
>forward_4739
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------C
GTGTGCACCTCAAATGTGG-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------
>reverse_7178
--------------------------------------------------------------------------------
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---------------------------------------------------------GCTGCTCTTGTGACCCTACA---
------------------------------
