AutoCloner

Multiple sequence alignment - TraesCS1A01G265900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1A01G265900	chr1A	100.000	1657	0	0	1	1657	461371799	461373455	0.000000e+00	3061
1	TraesCS1A01G265900	chr1A	100.000	505	0	0	1889	2393	461373687	461374191	0.000000e+00	933
2	TraesCS1A01G265900	chr1A	82.244	811	110	24	772	1564	461351132	461351926	0.000000e+00	669
3	TraesCS1A01G265900	chr1B	88.270	1671	125	38	2	1613	484375346	484377004	0.000000e+00	1934
4	TraesCS1A01G265900	chr1B	83.223	602	73	21	980	1564	484360514	484361104	5.860000e-146	527
5	TraesCS1A01G265900	chr1B	81.651	218	27	8	548	761	484352637	484352845	4.090000e-38	169
6	TraesCS1A01G265900	chr1D	89.771	743	36	11	404	1120	361913893	361914621	0.000000e+00	915
7	TraesCS1A01G265900	chr1D	81.243	853	112	36	784	1606	361844719	361845553	0.000000e+00	645
8	TraesCS1A01G265900	chr1D	91.572	439	23	8	1119	1548	361914666	361915099	5.700000e-166	593
9	TraesCS1A01G265900	chr1D	89.781	411	27	9	1	402	361913330	361913734	1.640000e-141	512
10	TraesCS1A01G265900	chr1D	85.375	506	57	8	1901	2390	427708743	427708239	2.120000e-140	508
11	TraesCS1A01G265900	chr1D	88.669	353	38	2	2042	2392	124564166	124564518	1.700000e-116	429
12	TraesCS1A01G265900	chr1D	84.545	220	25	7	1908	2122	468744914	468744699	2.410000e-50	209
13	TraesCS1A01G265900	chr7D	88.668	503	50	5	1895	2390	618289564	618289062	7.320000e-170	606
14	TraesCS1A01G265900	chr7D	86.982	507	49	9	1902	2392	519786824	519787329	2.690000e-154	555
15	TraesCS1A01G265900	chr2A	87.952	498	46	5	1908	2392	30069391	30068895	2.060000e-160	575
16	TraesCS1A01G265900	chr2A	76.071	280	51	12	1	270	383249016	383249289	5.370000e-27	132
17	TraesCS1A01G265900	chr4D	87.160	514	46	11	1892	2392	467642484	467641978	1.240000e-157	566
18	TraesCS1A01G265900	chr7B	86.693	511	52	12	1889	2392	4916451	4916952	9.670000e-154	553
19	TraesCS1A01G265900	chr7B	80.723	498	68	16	1895	2376	734055413	734055898	1.750000e-96	363
20	TraesCS1A01G265900	chr7B	75.564	266	45	13	30	284	104249397	104249141	1.940000e-21	113
21	TraesCS1A01G265900	chr2D	86.471	510	51	9	1889	2392	583220073	583220570	5.820000e-151	544
22	TraesCS1A01G265900	chr2D	78.571	182	26	11	30	202	16578558	16578381	9.050000e-20	108
23	TraesCS1A01G265900	chr6D	86.869	495	51	8	1908	2390	168299625	168299133	2.090000e-150	542
24	TraesCS1A01G265900	chr5D	86.627	501	48	13	1899	2392	106805285	106804797	9.740000e-149	536
25	TraesCS1A01G265900	chr5D	76.972	317	52	12	1197	1497	517521472	517521161	6.850000e-36	161
26	TraesCS1A01G265900	chr2B	85.907	518	54	10	1889	2390	702714969	702715483	3.500000e-148	534
27	TraesCS1A01G265900	chr2B	78.571	182	30	8	108	284	345610444	345610267	6.990000e-21	111
28	TraesCS1A01G265900	chr2B	74.643	280	55	13	16	284	224336557	224336283	2.510000e-20	110
29	TraesCS1A01G265900	chr4A	84.837	521	58	13	1889	2392	697891366	697891882	2.750000e-139	505
30	TraesCS1A01G265900	chr3A	86.232	414	45	5	1984	2386	568385473	568385885	2.820000e-119	438
31	TraesCS1A01G265900	chr5B	81.818	198	30	3	1208	1399	650045964	650045767	6.850000e-36	161
32	TraesCS1A01G265900	chr5A	80.838	167	22	8	108	270	31018858	31019018	3.230000e-24	122
33	TraesCS1A01G265900	chr5A	75.926	216	45	7	74	284	452926750	452926537	1.170000e-18	104

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1A01G265900	chr1A	461371799	461374191	2392	False	1997.000000	3061	100.000000	1	2393	2	chr1A.!!$F2	2392
1	TraesCS1A01G265900	chr1A	461351132	461351926	794	False	669.000000	669	82.244000	772	1564	1	chr1A.!!$F1	792
2	TraesCS1A01G265900	chr1B	484375346	484377004	1658	False	1934.000000	1934	88.270000	2	1613	1	chr1B.!!$F3	1611
3	TraesCS1A01G265900	chr1B	484360514	484361104	590	False	527.000000	527	83.223000	980	1564	1	chr1B.!!$F2	584
4	TraesCS1A01G265900	chr1D	361913330	361915099	1769	False	673.333333	915	90.374667	1	1548	3	chr1D.!!$F3	1547
5	TraesCS1A01G265900	chr1D	361844719	361845553	834	False	645.000000	645	81.243000	784	1606	1	chr1D.!!$F2	822
6	TraesCS1A01G265900	chr1D	427708239	427708743	504	True	508.000000	508	85.375000	1901	2390	1	chr1D.!!$R1	489
7	TraesCS1A01G265900	chr7D	618289062	618289564	502	True	606.000000	606	88.668000	1895	2390	1	chr7D.!!$R1	495
8	TraesCS1A01G265900	chr7D	519786824	519787329	505	False	555.000000	555	86.982000	1902	2392	1	chr7D.!!$F1	490
9	TraesCS1A01G265900	chr4D	467641978	467642484	506	True	566.000000	566	87.160000	1892	2392	1	chr4D.!!$R1	500
10	TraesCS1A01G265900	chr7B	4916451	4916952	501	False	553.000000	553	86.693000	1889	2392	1	chr7B.!!$F1	503
11	TraesCS1A01G265900	chr2B	702714969	702715483	514	False	534.000000	534	85.907000	1889	2390	1	chr2B.!!$F1	501
12	TraesCS1A01G265900	chr4A	697891366	697891882	516	False	505.000000	505	84.837000	1889	2392	1	chr4A.!!$F1	503

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
460	645	1.382522	ATAGTCCTTGCGTTGCCATG	58.617	50.0	0.0	0.0	0.0	3.66	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1614	1960	0.250553	CGAGAGGCGAGAGGAGGTAT	60.251	60.0	0.0	0.0	44.57	2.73	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
61	62	9.998106	ATAGTTGCGTTCCTATTGATTTACTAT	57.002	29.630	0.00	0.00	0.00	2.12
103	110	6.963049	AAACATAAGTCATAAGACCACGAC	57.037	37.500	0.00	0.00	46.15	4.34
238	246	7.201427	CCGACGTAAGATAAAATTTTCGGTACA	60.201	37.037	6.72	0.00	38.90	2.90
286	296	7.732222	AAAATAGATGGGGCAAAGAATACAA	57.268	32.000	0.00	0.00	0.00	2.41
412	584	9.554724	GGGCACATAATGTCGTATATTATTTTG	57.445	33.333	0.00	0.00	31.63	2.44
460	645	1.382522	ATAGTCCTTGCGTTGCCATG	58.617	50.000	0.00	0.00	0.00	3.66
480	665	8.680903	TGCCATGTTTTGTTTCATAATTTTTGT	58.319	25.926	0.00	0.00	0.00	2.83
508	693	1.446445	CACCGTCGGAACCGCATAA	60.446	57.895	20.51	0.00	39.59	1.90
523	708	3.181483	CCGCATAAGGGTTCGTAGTAACT	60.181	47.826	0.00	0.00	0.00	2.24
533	731	4.864247	GGTTCGTAGTAACTAAAATCGCCA	59.136	41.667	0.00	0.00	0.00	5.69
546	744	8.608844	ACTAAAATCGCCATCCTAGAAATTAG	57.391	34.615	0.00	0.00	0.00	1.73
616	831	4.814294	ATCGACCCACCGCTTCGC	62.814	66.667	0.00	0.00	32.70	4.70
633	848	1.591158	TCGCCGCGAATAGAAATTGTC	59.409	47.619	14.27	0.00	31.06	3.18
743	958	3.925379	AGCCGCCTTTAAAGAAAAATGG	58.075	40.909	16.98	9.25	0.00	3.16
745	960	3.926527	GCCGCCTTTAAAGAAAAATGGAG	59.073	43.478	16.98	0.75	0.00	3.86
827	1047	4.332828	ACAAGTTTATCCCAAGCACCTAC	58.667	43.478	0.00	0.00	0.00	3.18
972	1204	1.544691	GTAGACAGGACAAGGCGAGAA	59.455	52.381	0.00	0.00	0.00	2.87
999	1234	4.280929	TGCTAGAGAAGTGTAGAAGCAACA	59.719	41.667	0.00	0.00	35.70	3.33
1068	1303	2.239654	GGTCATGGGAATCCTCTCACAA	59.760	50.000	0.00	0.00	33.85	3.33
1136	1446	8.830201	TTTTAGCTTTGACATGCATTTGTTAT	57.170	26.923	0.00	0.00	0.00	1.89
1230	1552	1.490693	CGAAGTGCTGCGACAACTGT	61.491	55.000	0.00	0.00	0.00	3.55
1402	1724	4.428209	CAAGAAGTACTGATCGCTCATGT	58.572	43.478	0.00	0.00	0.00	3.21
1417	1743	5.643348	TCGCTCATGTTCAATAAGATGTTGT	59.357	36.000	0.00	0.00	37.57	3.32
1423	1749	4.699735	TGTTCAATAAGATGTTGTGCCGAT	59.300	37.500	0.00	0.00	0.00	4.18
1435	1761	4.697828	TGTTGTGCCGATAATAAAAGCTCA	59.302	37.500	0.00	0.00	0.00	4.26
1559	1899	1.101049	AACCTGTTGTTGCTCCGTGG	61.101	55.000	0.00	0.00	35.31	4.94
1566	1906	0.613260	TGTTGCTCCGTGGATAAGCT	59.387	50.000	0.00	0.00	36.96	3.74
1584	1930	7.442364	GGATAAGCTCTTGTATCAGTTTATGCA	59.558	37.037	5.69	0.00	35.55	3.96
1626	1972	9.712305	ATAAAATATTTGTCATACCTCCTCTCG	57.288	33.333	0.39	0.00	0.00	4.04
1627	1973	2.961526	TTTGTCATACCTCCTCTCGC	57.038	50.000	0.00	0.00	0.00	5.03
1628	1974	1.112113	TTGTCATACCTCCTCTCGCC	58.888	55.000	0.00	0.00	0.00	5.54
1629	1975	0.259065	TGTCATACCTCCTCTCGCCT	59.741	55.000	0.00	0.00	0.00	5.52
1630	1976	0.955905	GTCATACCTCCTCTCGCCTC	59.044	60.000	0.00	0.00	0.00	4.70
1631	1977	0.847373	TCATACCTCCTCTCGCCTCT	59.153	55.000	0.00	0.00	0.00	3.69
1632	1978	1.202830	TCATACCTCCTCTCGCCTCTC	60.203	57.143	0.00	0.00	0.00	3.20
1633	1979	0.250553	ATACCTCCTCTCGCCTCTCG	60.251	60.000	0.00	0.00	40.15	4.04
1634	1980	1.624479	TACCTCCTCTCGCCTCTCGT	61.624	60.000	0.00	0.00	39.67	4.18
1635	1981	2.477176	CCTCCTCTCGCCTCTCGTG	61.477	68.421	0.00	0.00	39.67	4.35
1636	1982	1.747367	CTCCTCTCGCCTCTCGTGT	60.747	63.158	0.00	0.00	39.67	4.49
1637	1983	1.711060	CTCCTCTCGCCTCTCGTGTC	61.711	65.000	0.00	0.00	39.67	3.67
1638	1984	2.401592	CTCTCGCCTCTCGTGTCG	59.598	66.667	0.00	0.00	39.67	4.35
1639	1985	3.726631	CTCTCGCCTCTCGTGTCGC	62.727	68.421	0.00	0.00	39.67	5.19
1640	1986	4.838486	CTCGCCTCTCGTGTCGCC	62.838	72.222	0.00	0.00	39.67	5.54
1642	1988	4.838486	CGCCTCTCGTGTCGCCTC	62.838	72.222	0.00	0.00	0.00	4.70
1643	1989	4.500116	GCCTCTCGTGTCGCCTCC	62.500	72.222	0.00	0.00	0.00	4.30
1644	1990	3.827898	CCTCTCGTGTCGCCTCCC	61.828	72.222	0.00	0.00	0.00	4.30
1645	1991	2.752238	CTCTCGTGTCGCCTCCCT	60.752	66.667	0.00	0.00	0.00	4.20
1646	1992	2.750637	TCTCGTGTCGCCTCCCTC	60.751	66.667	0.00	0.00	0.00	4.30
1647	1993	3.062466	CTCGTGTCGCCTCCCTCA	61.062	66.667	0.00	0.00	0.00	3.86
1648	1994	3.343788	CTCGTGTCGCCTCCCTCAC	62.344	68.421	0.00	0.00	0.00	3.51
1649	1995	4.778415	CGTGTCGCCTCCCTCACG	62.778	72.222	0.00	0.00	45.10	4.35
1650	1996	4.436998	GTGTCGCCTCCCTCACGG	62.437	72.222	0.00	0.00	0.00	4.94
1651	1997	4.671590	TGTCGCCTCCCTCACGGA	62.672	66.667	0.00	0.00	38.83	4.69
1652	1998	4.131088	GTCGCCTCCCTCACGGAC	62.131	72.222	0.00	0.00	34.86	4.79
1655	2001	4.131088	GCCTCCCTCACGGACGAC	62.131	72.222	0.00	0.00	34.86	4.34
1656	2002	2.361357	CCTCCCTCACGGACGACT	60.361	66.667	0.00	0.00	34.86	4.18
2035	2389	3.095347	GCCCAGATCCGTGGAGGTC	62.095	68.421	2.56	0.00	40.44	3.85
2175	2547	1.302993	CCATTGGTCCGTCCGGTTT	60.303	57.895	0.00	0.00	39.52	3.27
2178	2550	2.103339	ATTGGTCCGTCCGGTTTCGT	62.103	55.000	0.00	0.00	39.52	3.85
2260	2635	3.296709	GATCTGGACGCGGTGGTGT	62.297	63.158	12.47	0.00	40.22	4.16
2300	2682	1.550179	CGGAGCTCCAGGGGTATCATA	60.550	57.143	31.67	0.00	35.14	2.15
2342	2724	1.831736	AGTTTGTGCTAGCTCCGGTAT	59.168	47.619	17.23	0.00	0.00	2.73
2366	2748	0.035343	AGACTGTCGTCATCTCCCGA	60.035	55.000	1.52	0.00	42.73	5.14
2371	2753	0.318275	GTCGTCATCTCCCGATGCTC	60.318	60.000	0.00	0.00	45.32	4.26
2392	2774	4.916293	GCATGGATCTGGCGGCGA	62.916	66.667	12.98	5.15	0.00	5.54

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
83	90	5.651530	ACTGTCGTGGTCTTATGACTTATG	58.348	41.667	8.51	4.67	42.54	1.90
174	182	9.136952	GAACGTAAGAAAATACACATCAGTAGT	57.863	33.333	0.00	0.00	43.62	2.73
175	183	9.355215	AGAACGTAAGAAAATACACATCAGTAG	57.645	33.333	0.00	0.00	43.62	2.57
176	184	9.701098	AAGAACGTAAGAAAATACACATCAGTA	57.299	29.630	0.00	0.00	43.62	2.74
247	255	7.667219	CCCATCTATTTTAATATCACTGCACCT	59.333	37.037	0.00	0.00	0.00	4.00
270	278	3.364549	CCAGATTGTATTCTTTGCCCCA	58.635	45.455	0.00	0.00	0.00	4.96
286	296	7.727186	ACATAAATGCTTATTCATCACCCAGAT	59.273	33.333	0.00	0.00	37.48	2.90
368	381	2.696187	GCCCTGGGCGGAAAAATAATAA	59.304	45.455	24.16	0.00	39.62	1.40
372	385	4.347865	GCCCTGGGCGGAAAAATA	57.652	55.556	24.16	0.00	39.62	1.40
412	584	8.677300	TGTAAGATGATCTAACAAAGGAATTGC	58.323	33.333	0.00	0.00	43.13	3.56
451	636	5.896922	TTATGAAACAAAACATGGCAACG	57.103	34.783	0.00	0.00	42.51	4.10
480	665	1.068417	CCGACGGTGTGGAAGTTGA	59.932	57.895	5.48	0.00	0.00	3.18
508	693	5.105063	GCGATTTTAGTTACTACGAACCCT	58.895	41.667	4.66	0.00	0.00	4.34
523	708	8.974060	AACTAATTTCTAGGATGGCGATTTTA	57.026	30.769	0.00	0.00	0.00	1.52
533	731	8.989131	TGTACCTAGCAAACTAATTTCTAGGAT	58.011	33.333	19.82	11.66	41.88	3.24
546	744	3.006537	TCACCTCAGTGTACCTAGCAAAC	59.993	47.826	0.00	0.00	44.83	2.93
589	787	1.933853	GGTGGGTCGATTGATTCTTCG	59.066	52.381	0.00	4.00	36.72	3.79
616	831	4.616181	AAAGGACAATTTCTATTCGCGG	57.384	40.909	6.13	0.00	0.00	6.46
633	848	9.284968	AGGATTATTCGGTTATGTATGAAAAGG	57.715	33.333	0.00	0.00	0.00	3.11
743	958	0.815734	TGGCTAGCTTGGACGTACTC	59.184	55.000	15.72	0.00	0.00	2.59
745	960	0.806492	GCTGGCTAGCTTGGACGTAC	60.806	60.000	15.78	0.00	46.57	3.67
778	998	1.272147	CCTGGCTAGCTTGGACCTTTT	60.272	52.381	15.72	0.00	0.00	2.27
779	999	0.329596	CCTGGCTAGCTTGGACCTTT	59.670	55.000	15.72	0.00	0.00	3.11
780	1000	0.547712	TCCTGGCTAGCTTGGACCTT	60.548	55.000	20.03	0.00	0.00	3.50
781	1001	0.980231	CTCCTGGCTAGCTTGGACCT	60.980	60.000	20.03	0.00	0.00	3.85
782	1002	1.268283	ACTCCTGGCTAGCTTGGACC	61.268	60.000	20.03	2.81	0.00	4.46
827	1047	0.322456	ACATTGTGATCGTGGTGGGG	60.322	55.000	0.00	0.00	0.00	4.96
925	1154	6.923508	CGTAGAATGATGGTTTATGCTGTAGA	59.076	38.462	0.00	0.00	0.00	2.59
972	1204	5.011125	TGCTTCTACACTTCTCTAGCAAAGT	59.989	40.000	0.00	4.32	36.16	2.66
999	1234	1.202582	ACGAGCGTGCTACTCTTCATT	59.797	47.619	0.00	0.00	31.71	2.57
1068	1303	2.209064	ATCAGCACGTACCGTTCGCT	62.209	55.000	0.00	0.00	39.13	4.93
1143	1453	3.283751	CGGGGGTGCAATCAAATTAGTA	58.716	45.455	0.00	0.00	0.00	1.82
1174	1488	5.632764	CACGGACACATGCAATCAATTTTTA	59.367	36.000	0.00	0.00	0.00	1.52
1175	1489	4.448395	CACGGACACATGCAATCAATTTTT	59.552	37.500	0.00	0.00	0.00	1.94
1176	1490	3.989167	CACGGACACATGCAATCAATTTT	59.011	39.130	0.00	0.00	0.00	1.82
1179	1493	1.135315	GCACGGACACATGCAATCAAT	60.135	47.619	0.00	0.00	41.65	2.57
1230	1552	1.688187	GGCCCCCGAGAAGAACCTA	60.688	63.158	0.00	0.00	0.00	3.08
1402	1724	6.993786	TTATCGGCACAACATCTTATTGAA	57.006	33.333	0.00	0.00	0.00	2.69
1417	1743	4.756642	CCATCTGAGCTTTTATTATCGGCA	59.243	41.667	0.00	0.00	0.00	5.69
1435	1761	1.992277	AGCTCCGCTCAACCCATCT	60.992	57.895	0.00	0.00	30.62	2.90
1448	1774	0.865769	CGTACAACCACAACAGCTCC	59.134	55.000	0.00	0.00	0.00	4.70
1453	1779	0.727970	GTGCACGTACAACCACAACA	59.272	50.000	0.00	0.00	0.00	3.33
1559	1899	8.370493	TGCATAAACTGATACAAGAGCTTATC	57.630	34.615	0.00	0.00	0.00	1.75
1566	1906	7.337689	AGCAGAAATGCATAAACTGATACAAGA	59.662	33.333	22.81	0.00	37.25	3.02
1606	1952	3.321111	GGCGAGAGGAGGTATGACAAATA	59.679	47.826	0.00	0.00	0.00	1.40
1613	1959	1.243902	GAGAGGCGAGAGGAGGTATG	58.756	60.000	0.00	0.00	0.00	2.39
1614	1960	0.250553	CGAGAGGCGAGAGGAGGTAT	60.251	60.000	0.00	0.00	44.57	2.73
1615	1961	1.146485	CGAGAGGCGAGAGGAGGTA	59.854	63.158	0.00	0.00	44.57	3.08
1616	1962	2.124487	CGAGAGGCGAGAGGAGGT	60.124	66.667	0.00	0.00	44.57	3.85
1617	1963	2.124487	ACGAGAGGCGAGAGGAGG	60.124	66.667	0.00	0.00	44.57	4.30
1618	1964	1.711060	GACACGAGAGGCGAGAGGAG	61.711	65.000	0.00	0.00	44.57	3.69
1619	1965	1.745864	GACACGAGAGGCGAGAGGA	60.746	63.158	0.00	0.00	44.57	3.71
1620	1966	2.795297	GACACGAGAGGCGAGAGG	59.205	66.667	0.00	0.00	44.57	3.69
1621	1967	2.401592	CGACACGAGAGGCGAGAG	59.598	66.667	0.00	0.00	44.57	3.20
1622	1968	3.800863	GCGACACGAGAGGCGAGA	61.801	66.667	6.70	0.00	44.57	4.04
1623	1969	4.838486	GGCGACACGAGAGGCGAG	62.838	72.222	6.70	0.00	44.57	5.03
1626	1972	4.500116	GGAGGCGACACGAGAGGC	62.500	72.222	0.00	0.00	0.00	4.70
1627	1973	3.827898	GGGAGGCGACACGAGAGG	61.828	72.222	0.00	0.00	0.00	3.69
1628	1974	2.752238	AGGGAGGCGACACGAGAG	60.752	66.667	0.00	0.00	0.00	3.20
1629	1975	2.750637	GAGGGAGGCGACACGAGA	60.751	66.667	0.00	0.00	0.00	4.04
1630	1976	3.062466	TGAGGGAGGCGACACGAG	61.062	66.667	0.00	0.00	0.00	4.18
1631	1977	3.371063	GTGAGGGAGGCGACACGA	61.371	66.667	0.00	0.00	0.00	4.35
1632	1978	4.778415	CGTGAGGGAGGCGACACG	62.778	72.222	0.00	0.00	46.78	4.49
1890	2236	0.614979	GGGCACAGGAGGAGTCACTA	60.615	60.000	0.00	0.00	0.00	2.74
1979	2325	2.197324	CGGGAGAGAGGGGAGAGG	59.803	72.222	0.00	0.00	0.00	3.69
2016	2370	3.083349	CCTCCACGGATCTGGGCA	61.083	66.667	6.47	0.00	33.16	5.36
2159	2531	1.375013	CGAAACCGGACGGACCAAT	60.375	57.895	18.80	0.00	38.90	3.16
2168	2540	2.662070	GGGATGGGACGAAACCGGA	61.662	63.158	9.46	0.00	0.00	5.14
2175	2547	1.832608	CAGATCCGGGATGGGACGA	60.833	63.158	15.70	0.00	39.34	4.20
2178	2550	1.766059	CACCAGATCCGGGATGGGA	60.766	63.158	24.09	0.00	41.17	4.37
2371	2753	3.646976	CGCCAGATCCATGCAGCG	61.647	66.667	0.00	0.00	37.39	5.18

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.