Multiple sequence alignment - TraesCS1A01G265500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G265500 chr1A 100.000 2560 0 0 1 2560 461046711 461049270 0.000000e+00 4728
1 TraesCS1A01G265500 chr1A 83.977 1061 144 22 613 1662 460966921 460967966 0.000000e+00 994
2 TraesCS1A01G265500 chr1D 90.937 1953 157 13 303 2245 361487163 361489105 0.000000e+00 2608
3 TraesCS1A01G265500 chr1D 82.654 1055 148 21 624 1662 361212979 361214014 0.000000e+00 902
4 TraesCS1A01G265500 chr1D 79.695 852 133 25 971 1795 361205105 361205943 1.710000e-161 579
5 TraesCS1A01G265500 chr1D 91.156 294 17 5 5 297 361401149 361401434 8.590000e-105 390
6 TraesCS1A01G265500 chr1D 85.942 313 22 4 2248 2560 361489147 361489437 5.320000e-82 315
7 TraesCS1A01G265500 chr1B 95.299 1638 72 3 2 1638 484216495 484218128 0.000000e+00 2593
8 TraesCS1A01G265500 chr1B 94.631 1639 71 4 2 1638 484149508 484151131 0.000000e+00 2523
9 TraesCS1A01G265500 chr1B 89.747 712 60 6 1638 2339 484225796 484226504 0.000000e+00 898
10 TraesCS1A01G265500 chr1B 90.015 671 57 4 1676 2339 484158830 484159497 0.000000e+00 859
11 TraesCS1A01G265500 chr1B 77.883 841 151 29 835 1662 484213747 484214565 8.230000e-135 490
12 TraesCS1A01G265500 chr1B 77.765 841 152 29 835 1662 484146760 484147578 3.830000e-133 484
13 TraesCS1A01G265500 chr1B 88.125 320 20 11 987 1302 483903967 483904272 5.210000e-97 364


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G265500 chr1A 461046711 461049270 2559 False 4728.0 4728 100.0000 1 2560 1 chr1A.!!$F2 2559
1 TraesCS1A01G265500 chr1A 460966921 460967966 1045 False 994.0 994 83.9770 613 1662 1 chr1A.!!$F1 1049
2 TraesCS1A01G265500 chr1D 361487163 361489437 2274 False 1461.5 2608 88.4395 303 2560 2 chr1D.!!$F4 2257
3 TraesCS1A01G265500 chr1D 361212979 361214014 1035 False 902.0 902 82.6540 624 1662 1 chr1D.!!$F2 1038
4 TraesCS1A01G265500 chr1D 361205105 361205943 838 False 579.0 579 79.6950 971 1795 1 chr1D.!!$F1 824
5 TraesCS1A01G265500 chr1B 484213747 484218128 4381 False 1541.5 2593 86.5910 2 1662 2 chr1B.!!$F5 1660
6 TraesCS1A01G265500 chr1B 484146760 484151131 4371 False 1503.5 2523 86.1980 2 1662 2 chr1B.!!$F4 1660
7 TraesCS1A01G265500 chr1B 484225796 484226504 708 False 898.0 898 89.7470 1638 2339 1 chr1B.!!$F3 701
8 TraesCS1A01G265500 chr1B 484158830 484159497 667 False 859.0 859 90.0150 1676 2339 1 chr1B.!!$F2 663

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
989 3747 0.322456 AGATTGGCAAGTAAGGCGCA 60.322 50.0 10.83 0.0 36.77 6.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2458 5285 0.326927 CTTCCCTGGGCGAAGGTTTA 59.673 55.0 8.22 0.0 35.34 2.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 2787 5.925969 GGGAATTGTTCATGTCAAACGAAAT 59.074 36.000 9.29 0.00 0.00 2.17
48 2796 5.697178 TCATGTCAAACGAAATCGAGGTAAA 59.303 36.000 10.16 0.00 43.02 2.01
118 2866 9.591792 CTCTTTATTCATGTCACAGAGTCATTA 57.408 33.333 0.00 0.00 0.00 1.90
125 2873 7.260603 TCATGTCACAGAGTCATTACATACAG 58.739 38.462 0.00 0.00 0.00 2.74
216 2964 4.706842 TCCTAATCCCAAGCCATAGAAC 57.293 45.455 0.00 0.00 0.00 3.01
306 3054 5.927281 TTACCCTGTCACACCTATTAGTC 57.073 43.478 0.00 0.00 0.00 2.59
378 3126 1.842562 AGCATAGGCCAGTTGTGAGAT 59.157 47.619 5.01 0.00 42.56 2.75
514 3263 5.686753 TGTGTTTGTGGTACTTAGGTTGAT 58.313 37.500 0.00 0.00 0.00 2.57
555 3304 1.106944 TCGATGATGCTAGCGGTCCA 61.107 55.000 10.77 5.47 0.00 4.02
689 3440 5.332743 ACATGTATCCATTTGGTCCAGTTT 58.667 37.500 0.00 0.00 36.34 2.66
724 3475 2.512515 GGCGAGAGGTGGTGCATC 60.513 66.667 0.00 0.00 0.00 3.91
748 3499 6.037500 TCAGCTATGTGCAAGATACATTTGAC 59.962 38.462 0.00 0.00 45.94 3.18
760 3511 2.073816 ACATTTGACGATCGTGTTCCC 58.926 47.619 28.12 11.40 0.00 3.97
773 3524 2.483013 CGTGTTCCCAGAGTTCTTCACA 60.483 50.000 0.00 0.00 0.00 3.58
835 3586 2.205074 CGTAACAATGAGCTAGGCCTG 58.795 52.381 17.99 6.68 0.00 4.85
875 3630 6.314400 GTCTAATGATTGCCAATTTGCATGTT 59.686 34.615 4.87 1.70 41.70 2.71
940 3697 4.876107 GTGTGTCGAACTTTATCATCCCAT 59.124 41.667 0.00 0.00 0.00 4.00
963 3721 1.672030 CCAGTTGATGGCACGCTGA 60.672 57.895 9.88 0.00 43.83 4.26
989 3747 0.322456 AGATTGGCAAGTAAGGCGCA 60.322 50.000 10.83 0.00 36.77 6.09
1039 3797 0.738389 AACTCTGGCCAACAACAACG 59.262 50.000 7.01 0.00 0.00 4.10
1087 3846 8.474025 CACAACCTAAAGAGATAAGTGAGAGAT 58.526 37.037 0.00 0.00 0.00 2.75
1335 4101 1.949257 GCGTGCAGCCAACTACTTT 59.051 52.632 0.00 0.00 40.81 2.66
1392 4158 1.007422 GTTGATGTATGTGACGACGCG 60.007 52.381 3.53 3.53 0.00 6.01
1401 4167 2.506217 GACGACGCGCATCCTCAA 60.506 61.111 5.73 0.00 0.00 3.02
1468 4234 1.303317 AAGATGTTCCGGTGTGCCC 60.303 57.895 0.00 0.00 0.00 5.36
1536 4304 2.833631 ACTAACCGGTTCAACTCAGG 57.166 50.000 26.16 7.42 0.00 3.86
1537 4305 1.270678 ACTAACCGGTTCAACTCAGGC 60.271 52.381 26.16 0.00 0.00 4.85
1544 4312 0.954452 GTTCAACTCAGGCCACAAGG 59.046 55.000 5.01 0.00 38.23 3.61
1630 4399 1.792301 CCTCACAATGCACGCTGAG 59.208 57.895 8.69 8.69 0.00 3.35
1705 4486 6.150318 TCTTCGAGACTAAGATGTTGTTGTC 58.850 40.000 0.00 0.00 0.00 3.18
1734 4515 1.112113 GGTGCTCGTTCTATCCTCCA 58.888 55.000 0.00 0.00 0.00 3.86
1743 4524 6.706270 GCTCGTTCTATCCTCCATGAATAAAA 59.294 38.462 0.00 0.00 0.00 1.52
1755 4543 8.819974 CCTCCATGAATAAAATTAATTGTGTGC 58.180 33.333 0.39 0.00 0.00 4.57
1797 4585 5.173664 TGTTCATGTCACACAAATTTTGCA 58.826 33.333 9.04 0.00 0.00 4.08
1822 4610 6.875076 AGCAACTAGTGTCTAAATATCGGTT 58.125 36.000 0.00 0.00 0.00 4.44
1864 4652 4.314740 AACTCGTATCATCCTGCTCTTC 57.685 45.455 0.00 0.00 0.00 2.87
1891 4679 6.580788 TCATTTCTTTGCCAGAATTCAAACA 58.419 32.000 8.44 0.00 41.42 2.83
1896 4684 7.994425 TCTTTGCCAGAATTCAAACACTATA 57.006 32.000 8.44 0.00 0.00 1.31
1907 4695 9.937175 GAATTCAAACACTATATCTGCTAAACC 57.063 33.333 0.00 0.00 0.00 3.27
1929 4717 5.351465 ACCGTTATTAACATTCAGAGTGCTG 59.649 40.000 7.31 0.00 43.67 4.41
1956 4744 7.788867 AGGCTATATGTGGCTCTATCTTCATAT 59.211 37.037 0.00 0.00 35.30 1.78
2006 4794 8.649973 ATTTCATTGGATCTACTTTCGTCTAC 57.350 34.615 0.00 0.00 0.00 2.59
2062 4850 0.678395 TCACGTGTACCGCCCTTAAA 59.322 50.000 16.51 0.00 41.42 1.52
2063 4851 0.792031 CACGTGTACCGCCCTTAAAC 59.208 55.000 7.58 0.00 41.42 2.01
2064 4852 0.681175 ACGTGTACCGCCCTTAAACT 59.319 50.000 0.00 0.00 41.42 2.66
2124 4912 1.557371 TCATACATCCAAGAACGGGCA 59.443 47.619 0.00 0.00 0.00 5.36
2130 4918 1.815421 CCAAGAACGGGCATCCTCG 60.815 63.158 0.00 0.00 0.00 4.63
2146 4934 2.158885 TCCTCGTCAATGGACAACAACA 60.159 45.455 0.13 0.00 44.54 3.33
2149 4937 2.611751 TCGTCAATGGACAACAACAGTG 59.388 45.455 0.13 0.00 44.54 3.66
2170 4958 2.987821 GACAAGAAGCTTGACGAGGTAC 59.012 50.000 2.10 0.00 34.30 3.34
2270 5097 1.491670 CTTGGGTAGATGTCATCGCG 58.508 55.000 0.00 0.00 0.00 5.87
2285 5112 4.266739 GTCATCGCGTGAACATATTGTGTA 59.733 41.667 5.77 0.00 41.14 2.90
2321 5148 5.559770 TGGATGCAAGACATGTTCTTCTTA 58.440 37.500 0.00 0.00 43.23 2.10
2349 5176 4.080526 ACCTTGGAAGTATGATGTGGGTAC 60.081 45.833 0.00 0.00 0.00 3.34
2350 5177 4.164221 CCTTGGAAGTATGATGTGGGTACT 59.836 45.833 0.00 0.00 0.00 2.73
2374 5201 4.065423 ACATAAAGTTGCGATGAACACG 57.935 40.909 0.00 0.00 0.00 4.49
2383 5210 0.295763 CGATGAACACGACGATGCTG 59.704 55.000 0.00 0.00 0.00 4.41
2390 5217 0.249031 CACGACGATGCTGCCATAGA 60.249 55.000 0.00 0.00 0.00 1.98
2394 5221 0.107456 ACGATGCTGCCATAGAAGGG 59.893 55.000 0.00 0.00 0.00 3.95
2410 5237 2.214920 GGGAGGACAAGGTCACCGT 61.215 63.158 0.00 0.00 33.73 4.83
2414 5241 1.668151 GGACAAGGTCACCGTGCTC 60.668 63.158 10.05 6.73 36.49 4.26
2444 5271 2.350522 CAAGGTCGATCTCAACCCTTG 58.649 52.381 12.61 12.61 44.29 3.61
2445 5272 1.938585 AGGTCGATCTCAACCCTTGA 58.061 50.000 0.00 0.00 36.11 3.02
2446 5273 2.472029 AGGTCGATCTCAACCCTTGAT 58.528 47.619 0.00 0.00 39.30 2.57
2447 5274 2.169352 AGGTCGATCTCAACCCTTGATG 59.831 50.000 0.00 0.00 39.30 3.07
2448 5275 2.093447 GGTCGATCTCAACCCTTGATGT 60.093 50.000 0.00 0.00 39.30 3.06
2449 5276 3.600388 GTCGATCTCAACCCTTGATGTT 58.400 45.455 0.00 0.00 39.30 2.71
2450 5277 3.619038 GTCGATCTCAACCCTTGATGTTC 59.381 47.826 0.00 0.00 39.30 3.18
2451 5278 3.260632 TCGATCTCAACCCTTGATGTTCA 59.739 43.478 0.00 0.00 39.30 3.18
2452 5279 4.002982 CGATCTCAACCCTTGATGTTCAA 58.997 43.478 0.00 0.00 39.30 2.69
2453 5280 4.142816 CGATCTCAACCCTTGATGTTCAAC 60.143 45.833 0.00 0.00 39.30 3.18
2454 5281 3.138304 TCTCAACCCTTGATGTTCAACG 58.862 45.455 0.00 0.00 39.30 4.10
2455 5282 2.878406 CTCAACCCTTGATGTTCAACGT 59.122 45.455 0.00 0.00 39.30 3.99
2456 5283 4.062293 CTCAACCCTTGATGTTCAACGTA 58.938 43.478 0.00 0.00 39.30 3.57
2457 5284 4.647611 TCAACCCTTGATGTTCAACGTAT 58.352 39.130 0.00 0.00 34.08 3.06
2458 5285 5.067273 TCAACCCTTGATGTTCAACGTATT 58.933 37.500 0.00 0.00 34.08 1.89
2459 5286 6.231951 TCAACCCTTGATGTTCAACGTATTA 58.768 36.000 0.00 0.00 34.08 0.98
2460 5287 6.711194 TCAACCCTTGATGTTCAACGTATTAA 59.289 34.615 0.00 0.00 34.08 1.40
2461 5288 7.228906 TCAACCCTTGATGTTCAACGTATTAAA 59.771 33.333 0.00 0.00 34.08 1.52
2462 5289 6.905578 ACCCTTGATGTTCAACGTATTAAAC 58.094 36.000 0.00 0.00 32.21 2.01
2463 5290 6.072342 ACCCTTGATGTTCAACGTATTAAACC 60.072 38.462 0.00 0.00 32.21 3.27
2464 5291 6.150474 CCCTTGATGTTCAACGTATTAAACCT 59.850 38.462 0.00 0.00 32.21 3.50
2465 5292 7.308951 CCCTTGATGTTCAACGTATTAAACCTT 60.309 37.037 0.00 0.00 32.21 3.50
2466 5293 7.749126 CCTTGATGTTCAACGTATTAAACCTTC 59.251 37.037 0.00 0.00 32.21 3.46
2467 5294 6.823531 TGATGTTCAACGTATTAAACCTTCG 58.176 36.000 0.00 0.00 0.00 3.79
2468 5295 5.021120 TGTTCAACGTATTAAACCTTCGC 57.979 39.130 0.00 0.00 0.00 4.70
2469 5296 4.083908 TGTTCAACGTATTAAACCTTCGCC 60.084 41.667 0.00 0.00 0.00 5.54
2470 5297 3.002102 TCAACGTATTAAACCTTCGCCC 58.998 45.455 0.00 0.00 0.00 6.13
2471 5298 2.743126 CAACGTATTAAACCTTCGCCCA 59.257 45.455 0.00 0.00 0.00 5.36
2472 5299 2.624636 ACGTATTAAACCTTCGCCCAG 58.375 47.619 0.00 0.00 0.00 4.45
2473 5300 1.937899 CGTATTAAACCTTCGCCCAGG 59.062 52.381 0.00 0.00 40.23 4.45
2492 5319 0.744771 GGAAGTGGCCCGAAGATGAC 60.745 60.000 0.00 0.00 0.00 3.06
2496 5323 2.514824 GGCCCGAAGATGACTGCC 60.515 66.667 0.00 0.00 0.00 4.85
2504 5331 2.734809 CGAAGATGACTGCCAGAGAGTG 60.735 54.545 0.00 0.00 0.00 3.51
2516 5343 3.535561 CCAGAGAGTGTCAACAACAAGT 58.464 45.455 0.00 0.00 40.31 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 5.835819 TGAACAATTCCCTTTCCAATACACA 59.164 36.000 0.00 0.00 0.00 3.72
3 4 6.339587 TGAACAATTCCCTTTCCAATACAC 57.660 37.500 0.00 0.00 0.00 2.90
5 6 6.935167 ACATGAACAATTCCCTTTCCAATAC 58.065 36.000 0.00 0.00 0.00 1.89
39 2787 9.021807 CCTTATCACCTTATAGATTTACCTCGA 57.978 37.037 0.00 0.00 0.00 4.04
83 2831 6.094048 GTGACATGAATAAAGAGCTGCCTTAA 59.906 38.462 0.00 0.00 0.00 1.85
125 2873 2.662596 TGGTCGCATCCAGGACAC 59.337 61.111 0.00 0.00 34.87 3.67
306 3054 0.107456 AGGCGGATCACTGCTATTGG 59.893 55.000 0.00 0.00 46.53 3.16
514 3263 6.819649 TCGACTTAGACAAAAGAAAACCTCAA 59.180 34.615 0.00 0.00 0.00 3.02
651 3400 6.093495 TGGATACATGTAAAGCTTAAGTGTGC 59.907 38.462 10.14 0.00 46.17 4.57
689 3440 2.693591 CGCCTCCTTGAGTATAGGACAA 59.306 50.000 0.00 0.00 36.88 3.18
724 3475 6.197276 GTCAAATGTATCTTGCACATAGCTG 58.803 40.000 0.00 0.00 45.94 4.24
748 3499 1.202582 AGAACTCTGGGAACACGATCG 59.797 52.381 14.88 14.88 35.60 3.69
760 3511 9.605275 TCCATCTATATTTTGTGAAGAACTCTG 57.395 33.333 0.00 0.00 0.00 3.35
835 3586 5.437060 TCATTAGACTTGTAGGCCAAATCC 58.563 41.667 5.01 0.00 29.51 3.01
875 3630 8.366401 ACACATATTTTTCCACATGTTCAATGA 58.634 29.630 0.00 0.00 29.31 2.57
940 3697 0.888736 CGTGCCATCAACTGGGTGAA 60.889 55.000 0.00 0.00 46.06 3.18
963 3721 4.526970 CCTTACTTGCCAATCTACCATGT 58.473 43.478 0.00 0.00 0.00 3.21
989 3747 6.428159 CACCTCTATTTATAGGCGCAGATTTT 59.572 38.462 10.83 0.00 36.24 1.82
1039 3797 8.942338 TGTGAGTGGAATACTATGTTGTAATC 57.058 34.615 0.00 0.00 40.53 1.75
1087 3846 9.187455 GTTGATTTTAAGGTTTTCGAGCAAATA 57.813 29.630 0.00 0.00 0.00 1.40
1315 4081 0.817634 AAGTAGTTGGCTGCACGCAA 60.818 50.000 0.50 0.00 41.67 4.85
1335 4101 2.100584 GCATTTGTCACAACACTTGGGA 59.899 45.455 0.00 0.00 41.69 4.37
1430 4196 4.624364 CACGGCCTGTCTGCACCA 62.624 66.667 0.00 0.00 0.00 4.17
1468 4234 1.307355 TTGATGGTGGAGCGCATGTG 61.307 55.000 11.47 0.66 0.00 3.21
1537 4305 2.644992 GCGGAACAAGCCTTGTGG 59.355 61.111 11.51 5.10 44.59 4.17
1544 4312 5.008712 AGCTTTTATTATAGGCGGAACAAGC 59.991 40.000 0.00 0.00 34.43 4.01
1578 4346 4.201851 GCATAAACACGATGACAATGCTCT 60.202 41.667 0.00 0.00 36.27 4.09
1630 4399 4.085055 CGACCGACAATAGTACATGCATTC 60.085 45.833 0.00 0.00 0.00 2.67
1734 4515 7.706179 CGGAGGCACACAATTAATTTTATTCAT 59.294 33.333 0.00 0.00 0.00 2.57
1743 4524 5.968528 TTAAACGGAGGCACACAATTAAT 57.031 34.783 0.00 0.00 0.00 1.40
1755 4543 4.766404 ACAAATGCTCTTTAAACGGAGG 57.234 40.909 6.60 0.00 0.00 4.30
1797 4585 6.875076 ACCGATATTTAGACACTAGTTGCTT 58.125 36.000 0.00 0.00 0.00 3.91
1848 4636 8.313292 AGAAATGATAGAAGAGCAGGATGATAC 58.687 37.037 0.00 0.00 39.69 2.24
1853 4641 6.262720 GCAAAGAAATGATAGAAGAGCAGGAT 59.737 38.462 0.00 0.00 0.00 3.24
1896 4684 8.500753 TGAATGTTAATAACGGTTTAGCAGAT 57.499 30.769 0.00 0.00 0.00 2.90
1907 4695 6.647212 TCAGCACTCTGAATGTTAATAACG 57.353 37.500 0.00 0.00 45.69 3.18
1929 4717 5.420421 TGAAGATAGAGCCACATATAGCCTC 59.580 44.000 0.00 0.00 0.00 4.70
1999 4787 4.865925 CCGTATTTCCATTTGTGTAGACGA 59.134 41.667 0.00 0.00 0.00 4.20
2006 4794 6.362283 GTGTTTCTTCCGTATTTCCATTTGTG 59.638 38.462 0.00 0.00 0.00 3.33
2089 4877 0.468214 TATGAGAGTGAGAGCGGGGG 60.468 60.000 0.00 0.00 0.00 5.40
2124 4912 3.074412 GTTGTTGTCCATTGACGAGGAT 58.926 45.455 0.00 0.00 44.86 3.24
2130 4918 3.376859 TGTCACTGTTGTTGTCCATTGAC 59.623 43.478 0.00 0.00 40.00 3.18
2146 4934 2.546795 CCTCGTCAAGCTTCTTGTCACT 60.547 50.000 0.00 0.00 0.00 3.41
2149 4937 2.156343 ACCTCGTCAAGCTTCTTGTC 57.844 50.000 0.00 0.98 0.00 3.18
2235 5023 5.367945 ACCCAAGGAAAGCGATTTATAGA 57.632 39.130 0.00 0.00 0.00 1.98
2285 5112 8.523915 TGTCTTGCATCCATATTAACAAGATT 57.476 30.769 6.54 0.00 43.64 2.40
2321 5148 5.711976 CCACATCATACTTCCAAGGTTTTCT 59.288 40.000 0.00 0.00 0.00 2.52
2349 5176 7.043656 TCGTGTTCATCGCAACTTTATGTATAG 60.044 37.037 0.00 0.00 0.00 1.31
2350 5177 6.752815 TCGTGTTCATCGCAACTTTATGTATA 59.247 34.615 0.00 0.00 0.00 1.47
2362 5189 1.682867 GCATCGTCGTGTTCATCGCA 61.683 55.000 0.00 0.00 0.00 5.10
2374 5201 1.506493 CCTTCTATGGCAGCATCGTC 58.494 55.000 0.00 0.00 0.00 4.20
2383 5210 1.141858 CCTTGTCCTCCCTTCTATGGC 59.858 57.143 0.00 0.00 0.00 4.40
2390 5217 1.481056 CGGTGACCTTGTCCTCCCTT 61.481 60.000 0.00 0.00 0.00 3.95
2394 5221 1.668151 GCACGGTGACCTTGTCCTC 60.668 63.158 13.29 0.00 0.00 3.71
2410 5237 3.564262 CCTTGAAGAGGCATGAGCA 57.436 52.632 0.00 0.00 44.61 4.26
2444 5271 5.731263 GCGAAGGTTTAATACGTTGAACATC 59.269 40.000 0.00 0.00 36.00 3.06
2445 5272 5.391203 GGCGAAGGTTTAATACGTTGAACAT 60.391 40.000 0.00 0.00 36.00 2.71
2446 5273 4.083908 GGCGAAGGTTTAATACGTTGAACA 60.084 41.667 0.00 0.00 36.00 3.18
2447 5274 4.397382 GGCGAAGGTTTAATACGTTGAAC 58.603 43.478 0.00 0.00 35.13 3.18
2448 5275 3.436359 GGGCGAAGGTTTAATACGTTGAA 59.564 43.478 0.00 0.00 35.13 2.69
2449 5276 3.002102 GGGCGAAGGTTTAATACGTTGA 58.998 45.455 0.00 0.00 35.13 3.18
2450 5277 2.743126 TGGGCGAAGGTTTAATACGTTG 59.257 45.455 0.00 0.00 35.13 4.10
2451 5278 3.004862 CTGGGCGAAGGTTTAATACGTT 58.995 45.455 0.00 0.00 37.54 3.99
2452 5279 2.624636 CTGGGCGAAGGTTTAATACGT 58.375 47.619 0.00 0.00 0.00 3.57
2453 5280 1.937899 CCTGGGCGAAGGTTTAATACG 59.062 52.381 0.00 0.00 32.17 3.06
2454 5281 2.092807 TCCCTGGGCGAAGGTTTAATAC 60.093 50.000 8.22 0.00 35.34 1.89
2455 5282 2.198336 TCCCTGGGCGAAGGTTTAATA 58.802 47.619 8.22 0.00 35.34 0.98
2456 5283 0.996583 TCCCTGGGCGAAGGTTTAAT 59.003 50.000 8.22 0.00 35.34 1.40
2457 5284 0.772384 TTCCCTGGGCGAAGGTTTAA 59.228 50.000 8.22 0.00 35.34 1.52
2458 5285 0.326927 CTTCCCTGGGCGAAGGTTTA 59.673 55.000 8.22 0.00 35.34 2.01
2459 5286 1.074951 CTTCCCTGGGCGAAGGTTT 59.925 57.895 8.22 0.00 35.34 3.27
2460 5287 2.154074 ACTTCCCTGGGCGAAGGTT 61.154 57.895 16.19 0.00 40.90 3.50
2461 5288 2.529389 ACTTCCCTGGGCGAAGGT 60.529 61.111 16.19 1.06 40.90 3.50
2462 5289 2.045926 CACTTCCCTGGGCGAAGG 60.046 66.667 16.19 0.46 40.90 3.46
2463 5290 2.045926 CCACTTCCCTGGGCGAAG 60.046 66.667 8.22 10.27 42.06 3.79
2464 5291 4.344865 GCCACTTCCCTGGGCGAA 62.345 66.667 8.22 0.00 38.04 4.70
2469 5296 3.628646 CTTCGGGCCACTTCCCTGG 62.629 68.421 4.39 0.00 44.30 4.45
2470 5297 1.915078 ATCTTCGGGCCACTTCCCTG 61.915 60.000 4.39 0.00 44.30 4.45
2471 5298 1.616628 ATCTTCGGGCCACTTCCCT 60.617 57.895 4.39 0.00 44.30 4.20
2472 5299 1.452108 CATCTTCGGGCCACTTCCC 60.452 63.158 4.39 0.00 43.02 3.97
2473 5300 0.744771 GTCATCTTCGGGCCACTTCC 60.745 60.000 4.39 0.00 0.00 3.46
2492 5319 1.869767 GTTGTTGACACTCTCTGGCAG 59.130 52.381 8.58 8.58 39.90 4.85
2496 5323 4.747108 CCTACTTGTTGTTGACACTCTCTG 59.253 45.833 0.00 0.00 38.18 3.35
2504 5331 7.376615 ACTACTATGTCCTACTTGTTGTTGAC 58.623 38.462 0.00 0.00 32.96 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.