Multiple sequence alignment - TraesCS1A01G257700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G257700 chr1A 100.000 3245 0 0 1 3245 449808186 449804942 0.000000e+00 5993.0
1 TraesCS1A01G257700 chr1A 82.911 790 126 5 1462 2248 449754728 449753945 0.000000e+00 702.0
2 TraesCS1A01G257700 chr1A 88.032 376 28 12 1027 1401 449755100 449754741 2.310000e-116 429.0
3 TraesCS1A01G257700 chr1A 83.607 122 14 5 2938 3057 95287724 95287841 3.420000e-20 110.0
4 TraesCS1A01G257700 chr1D 89.495 2199 153 36 225 2375 349473340 349471172 0.000000e+00 2710.0
5 TraesCS1A01G257700 chr1D 82.554 791 118 11 1462 2242 349444427 349443647 0.000000e+00 678.0
6 TraesCS1A01G257700 chr1D 87.467 375 32 9 1027 1401 349444799 349444440 5.010000e-113 418.0
7 TraesCS1A01G257700 chr1D 82.828 198 32 2 1 197 349473530 349473334 3.330000e-40 176.0
8 TraesCS1A01G257700 chr1D 90.083 121 9 2 3127 3245 118942104 118941985 1.560000e-33 154.0
9 TraesCS1A01G257700 chr1D 88.618 123 9 4 3127 3245 132649031 132648910 9.380000e-31 145.0
10 TraesCS1A01G257700 chr1D 72.619 252 46 14 2789 3035 460184495 460184728 9.720000e-06 62.1
11 TraesCS1A01G257700 chr1B 93.094 1535 88 10 900 2433 470966171 470964654 0.000000e+00 2231.0
12 TraesCS1A01G257700 chr1B 83.146 356 38 10 515 855 470966523 470966175 4.070000e-79 305.0
13 TraesCS1A01G257700 chr1B 92.500 160 10 1 2482 2641 470964440 470964283 9.060000e-56 228.0
14 TraesCS1A01G257700 chr1B 87.755 49 4 1 2846 2892 264765948 264765996 4.520000e-04 56.5
15 TraesCS1A01G257700 chrUn 83.985 793 115 7 1462 2248 7179605 7178819 0.000000e+00 750.0
16 TraesCS1A01G257700 chrUn 85.246 122 11 5 2938 3056 5424378 5424495 5.690000e-23 119.0
17 TraesCS1A01G257700 chrUn 79.545 88 15 3 2793 2877 108605079 108605166 3.500000e-05 60.2
18 TraesCS1A01G257700 chr5A 80.870 230 27 11 2832 3053 487327945 487328165 7.200000e-37 165.0
19 TraesCS1A01G257700 chr6A 81.731 208 26 7 2851 3053 40224121 40223921 2.590000e-36 163.0
20 TraesCS1A01G257700 chr6A 89.344 122 9 3 3127 3245 383698524 383698644 2.020000e-32 150.0
21 TraesCS1A01G257700 chr5B 79.487 234 35 13 2479 2707 18063797 18064022 1.560000e-33 154.0
22 TraesCS1A01G257700 chr4A 89.344 122 9 3 3127 3245 62884119 62884239 2.020000e-32 150.0
23 TraesCS1A01G257700 chr3D 89.344 122 9 3 3127 3245 446363802 446363682 2.020000e-32 150.0
24 TraesCS1A01G257700 chr3D 89.256 121 9 3 3128 3245 325106037 325105918 7.250000e-32 148.0
25 TraesCS1A01G257700 chr3D 76.136 264 40 16 2791 3047 552780950 552780703 2.050000e-22 117.0
26 TraesCS1A01G257700 chr3A 88.525 122 10 3 3127 3245 508300326 508300446 9.380000e-31 145.0
27 TraesCS1A01G257700 chr3A 74.368 277 48 18 2791 3057 689110301 689110038 2.660000e-16 97.1
28 TraesCS1A01G257700 chr7D 88.525 122 9 4 3128 3245 92945313 92945433 3.370000e-30 143.0
29 TraesCS1A01G257700 chr7D 88.525 122 9 4 3128 3245 181186485 181186365 3.370000e-30 143.0
30 TraesCS1A01G257700 chr7B 78.125 224 33 12 2791 3004 40289631 40289848 9.450000e-26 128.0
31 TraesCS1A01G257700 chr7B 97.059 34 0 1 2792 2825 36505348 36505316 4.520000e-04 56.5
32 TraesCS1A01G257700 chr2D 76.727 275 35 15 2791 3057 381867114 381866861 3.400000e-25 126.0
33 TraesCS1A01G257700 chr2D 87.879 99 6 3 2947 3044 476807829 476807922 9.520000e-21 111.0
34 TraesCS1A01G257700 chr2D 82.171 129 19 3 2549 2676 15196001 15196126 1.230000e-19 108.0
35 TraesCS1A01G257700 chr2D 82.308 130 10 10 2923 3050 391105360 391105478 2.060000e-17 100.0
36 TraesCS1A01G257700 chr2B 77.612 201 30 11 2917 3106 701356398 701356202 1.230000e-19 108.0
37 TraesCS1A01G257700 chr5D 76.526 213 36 11 2852 3057 393910591 393910796 1.590000e-18 104.0
38 TraesCS1A01G257700 chr5D 76.847 203 26 14 2933 3123 443628609 443628802 9.580000e-16 95.3
39 TraesCS1A01G257700 chr2A 78.916 166 25 9 2852 3011 765171432 765171271 1.590000e-18 104.0
40 TraesCS1A01G257700 chr2A 81.395 129 20 3 2549 2676 17251534 17251659 5.730000e-18 102.0
41 TraesCS1A01G257700 chr7A 87.671 73 7 2 2940 3012 546271225 546271295 2.070000e-12 84.2
42 TraesCS1A01G257700 chr6D 91.228 57 2 3 2682 2738 53541997 53542050 1.250000e-09 75.0
43 TraesCS1A01G257700 chr6B 81.000 100 10 6 2791 2884 167027845 167027941 1.620000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G257700 chr1A 449804942 449808186 3244 True 5993.000000 5993 100.0000 1 3245 1 chr1A.!!$R1 3244
1 TraesCS1A01G257700 chr1A 449753945 449755100 1155 True 565.500000 702 85.4715 1027 2248 2 chr1A.!!$R2 1221
2 TraesCS1A01G257700 chr1D 349471172 349473530 2358 True 1443.000000 2710 86.1615 1 2375 2 chr1D.!!$R4 2374
3 TraesCS1A01G257700 chr1D 349443647 349444799 1152 True 548.000000 678 85.0105 1027 2242 2 chr1D.!!$R3 1215
4 TraesCS1A01G257700 chr1B 470964283 470966523 2240 True 921.333333 2231 89.5800 515 2641 3 chr1B.!!$R1 2126
5 TraesCS1A01G257700 chrUn 7178819 7179605 786 True 750.000000 750 83.9850 1462 2248 1 chrUn.!!$R1 786

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
237 238 0.036952 CCTCATCCAGCACGTGAAGT 60.037 55.0 22.23 0.0 0.0 3.01 F
804 895 0.306840 CGATCGCGCTGGAGTAGTTA 59.693 55.0 5.56 0.0 0.0 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1624 1718 0.171903 GAGAACACACATGCCATGGC 59.828 55.0 30.54 30.54 42.35 4.40 R
2648 2914 0.106918 TCCGCACAACTTGGGACTTT 60.107 50.0 0.00 0.00 40.70 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 8.605354 TTTAACAGTACACTAATGACGTATCG 57.395 34.615 0.00 0.00 0.00 2.92
47 48 6.908870 ACAGTACACTAATGACGTATCGTA 57.091 37.500 0.00 0.00 41.37 3.43
88 89 6.396829 AGATTAATTACAAGAAGCATGCCC 57.603 37.500 15.66 6.84 0.00 5.36
89 90 5.302823 AGATTAATTACAAGAAGCATGCCCC 59.697 40.000 15.66 6.43 0.00 5.80
91 92 0.679640 TTACAAGAAGCATGCCCCGG 60.680 55.000 15.66 0.00 0.00 5.73
94 95 0.179020 CAAGAAGCATGCCCCGGATA 60.179 55.000 15.66 0.00 0.00 2.59
95 96 0.179018 AAGAAGCATGCCCCGGATAC 60.179 55.000 15.66 0.00 0.00 2.24
112 113 1.990799 TACGAACATTCAGGCAGACG 58.009 50.000 0.00 0.00 0.00 4.18
144 145 3.746940 GCCTTACACCAACTCCAAACTA 58.253 45.455 0.00 0.00 0.00 2.24
150 151 2.806244 CACCAACTCCAAACTAGGAACG 59.194 50.000 0.00 0.00 37.20 3.95
151 152 2.436911 ACCAACTCCAAACTAGGAACGT 59.563 45.455 0.00 0.00 37.20 3.99
166 167 3.830755 AGGAACGTTAAGCTAACTCCTCA 59.169 43.478 0.00 0.00 38.33 3.86
168 169 4.553323 GAACGTTAAGCTAACTCCTCACA 58.447 43.478 0.00 0.00 36.54 3.58
174 175 6.073222 CGTTAAGCTAACTCCTCACAAATTGT 60.073 38.462 0.00 0.00 36.54 2.71
195 196 4.566987 GTTGTAAACCACCAAAACCAACA 58.433 39.130 0.00 0.00 42.21 3.33
196 197 4.189639 TGTAAACCACCAAAACCAACAC 57.810 40.909 0.00 0.00 0.00 3.32
197 198 2.772077 AAACCACCAAAACCAACACC 57.228 45.000 0.00 0.00 0.00 4.16
198 199 0.906066 AACCACCAAAACCAACACCC 59.094 50.000 0.00 0.00 0.00 4.61
199 200 1.324005 ACCACCAAAACCAACACCCG 61.324 55.000 0.00 0.00 0.00 5.28
200 201 1.324005 CCACCAAAACCAACACCCGT 61.324 55.000 0.00 0.00 0.00 5.28
201 202 0.533032 CACCAAAACCAACACCCGTT 59.467 50.000 0.00 0.00 35.01 4.44
202 203 1.066787 CACCAAAACCAACACCCGTTT 60.067 47.619 0.00 0.00 33.69 3.60
203 204 1.624312 ACCAAAACCAACACCCGTTTT 59.376 42.857 0.00 0.00 41.61 2.43
204 205 2.272678 CCAAAACCAACACCCGTTTTC 58.727 47.619 0.00 0.00 39.53 2.29
205 206 2.272678 CAAAACCAACACCCGTTTTCC 58.727 47.619 0.00 0.00 39.53 3.13
206 207 1.855295 AAACCAACACCCGTTTTCCT 58.145 45.000 0.00 0.00 31.13 3.36
207 208 1.395635 AACCAACACCCGTTTTCCTC 58.604 50.000 0.00 0.00 31.13 3.71
208 209 0.466739 ACCAACACCCGTTTTCCTCC 60.467 55.000 0.00 0.00 31.13 4.30
209 210 0.466555 CCAACACCCGTTTTCCTCCA 60.467 55.000 0.00 0.00 31.13 3.86
210 211 0.666374 CAACACCCGTTTTCCTCCAC 59.334 55.000 0.00 0.00 31.13 4.02
211 212 0.549469 AACACCCGTTTTCCTCCACT 59.451 50.000 0.00 0.00 28.09 4.00
212 213 0.108019 ACACCCGTTTTCCTCCACTC 59.892 55.000 0.00 0.00 0.00 3.51
213 214 0.107831 CACCCGTTTTCCTCCACTCA 59.892 55.000 0.00 0.00 0.00 3.41
214 215 0.396811 ACCCGTTTTCCTCCACTCAG 59.603 55.000 0.00 0.00 0.00 3.35
215 216 0.955919 CCCGTTTTCCTCCACTCAGC 60.956 60.000 0.00 0.00 0.00 4.26
216 217 0.250295 CCGTTTTCCTCCACTCAGCA 60.250 55.000 0.00 0.00 0.00 4.41
217 218 1.593196 CGTTTTCCTCCACTCAGCAA 58.407 50.000 0.00 0.00 0.00 3.91
218 219 1.264288 CGTTTTCCTCCACTCAGCAAC 59.736 52.381 0.00 0.00 0.00 4.17
219 220 1.609072 GTTTTCCTCCACTCAGCAACC 59.391 52.381 0.00 0.00 0.00 3.77
220 221 1.140312 TTTCCTCCACTCAGCAACCT 58.860 50.000 0.00 0.00 0.00 3.50
221 222 0.687354 TTCCTCCACTCAGCAACCTC 59.313 55.000 0.00 0.00 0.00 3.85
222 223 0.471780 TCCTCCACTCAGCAACCTCA 60.472 55.000 0.00 0.00 0.00 3.86
223 224 0.617413 CCTCCACTCAGCAACCTCAT 59.383 55.000 0.00 0.00 0.00 2.90
224 225 1.406614 CCTCCACTCAGCAACCTCATC 60.407 57.143 0.00 0.00 0.00 2.92
227 228 1.678123 CCACTCAGCAACCTCATCCAG 60.678 57.143 0.00 0.00 0.00 3.86
237 238 0.036952 CCTCATCCAGCACGTGAAGT 60.037 55.000 22.23 0.00 0.00 3.01
247 248 3.036026 ACGTGAAGTGATAGCGCAG 57.964 52.632 11.47 0.00 0.00 5.18
249 250 1.336887 ACGTGAAGTGATAGCGCAGTT 60.337 47.619 11.47 0.00 34.28 3.16
250 251 1.059692 CGTGAAGTGATAGCGCAGTTG 59.940 52.381 11.47 0.00 31.86 3.16
272 273 1.601903 TGACATTTGTTGCGTCACTCC 59.398 47.619 0.00 0.00 34.83 3.85
282 283 1.202440 TGCGTCACTCCGTTAAACACT 60.202 47.619 0.00 0.00 0.00 3.55
284 285 2.861360 GCGTCACTCCGTTAAACACTCT 60.861 50.000 0.00 0.00 0.00 3.24
289 290 5.924825 GTCACTCCGTTAAACACTCTAACAT 59.075 40.000 0.00 0.00 30.96 2.71
293 294 7.383029 CACTCCGTTAAACACTCTAACATTACA 59.617 37.037 0.00 0.00 30.96 2.41
296 297 7.596248 TCCGTTAAACACTCTAACATTACACTC 59.404 37.037 0.00 0.00 30.96 3.51
300 301 7.964604 AAACACTCTAACATTACACTCCTTC 57.035 36.000 0.00 0.00 0.00 3.46
305 306 8.258007 CACTCTAACATTACACTCCTTCCATAA 58.742 37.037 0.00 0.00 0.00 1.90
309 310 9.838339 CTAACATTACACTCCTTCCATAAAGAT 57.162 33.333 0.00 0.00 37.12 2.40
317 318 5.103771 ACTCCTTCCATAAAGATCAAGCCAT 60.104 40.000 0.00 0.00 37.12 4.40
342 349 2.145397 ATGTGTCGAAGCCTCTCCTA 57.855 50.000 0.00 0.00 0.00 2.94
347 354 2.303175 GTCGAAGCCTCTCCTATCTGT 58.697 52.381 0.00 0.00 0.00 3.41
352 359 1.050988 GCCTCTCCTATCTGTGCCCA 61.051 60.000 0.00 0.00 0.00 5.36
360 367 3.266772 TCCTATCTGTGCCCATGAAGTTT 59.733 43.478 0.00 0.00 0.00 2.66
369 376 2.682269 GCCCATGAAGTTTCTCCTCTCC 60.682 54.545 0.00 0.00 0.00 3.71
370 377 2.092699 CCCATGAAGTTTCTCCTCTCCC 60.093 54.545 0.00 0.00 0.00 4.30
371 378 2.843113 CCATGAAGTTTCTCCTCTCCCT 59.157 50.000 0.00 0.00 0.00 4.20
372 379 3.370315 CCATGAAGTTTCTCCTCTCCCTG 60.370 52.174 0.00 0.00 0.00 4.45
373 380 3.260269 TGAAGTTTCTCCTCTCCCTGA 57.740 47.619 0.00 0.00 0.00 3.86
374 381 3.587498 TGAAGTTTCTCCTCTCCCTGAA 58.413 45.455 0.00 0.00 0.00 3.02
375 382 3.580458 TGAAGTTTCTCCTCTCCCTGAAG 59.420 47.826 0.00 0.00 0.00 3.02
376 383 3.551635 AGTTTCTCCTCTCCCTGAAGA 57.448 47.619 0.00 0.00 0.00 2.87
379 386 1.388174 TCTCCTCTCCCTGAAGACCT 58.612 55.000 0.00 0.00 0.00 3.85
380 387 1.006519 TCTCCTCTCCCTGAAGACCTG 59.993 57.143 0.00 0.00 0.00 4.00
382 389 1.433199 TCCTCTCCCTGAAGACCTGAA 59.567 52.381 0.00 0.00 0.00 3.02
388 395 0.320771 CCTGAAGACCTGAACCACCG 60.321 60.000 0.00 0.00 0.00 4.94
393 400 3.148084 ACCTGAACCACCGGTCAG 58.852 61.111 2.59 9.35 33.12 3.51
394 401 2.358737 CCTGAACCACCGGTCAGC 60.359 66.667 2.59 0.00 33.12 4.26
435 462 0.917333 GGGGGTCCCACACCTTATGA 60.917 60.000 10.98 0.00 42.75 2.15
443 470 3.137544 TCCCACACCTTATGACACACTTT 59.862 43.478 0.00 0.00 0.00 2.66
455 483 4.102649 TGACACACTTTCGAGCATATACG 58.897 43.478 0.00 0.00 0.00 3.06
459 487 3.116300 CACTTTCGAGCATATACGCACT 58.884 45.455 0.00 0.00 0.00 4.40
461 489 3.551890 ACTTTCGAGCATATACGCACTTG 59.448 43.478 0.00 0.00 0.00 3.16
465 493 1.787155 GAGCATATACGCACTTGGACG 59.213 52.381 0.00 0.00 0.00 4.79
478 506 4.671766 GCACTTGGACGGAATATGTTTGAC 60.672 45.833 0.00 0.00 0.00 3.18
482 510 3.433957 TGGACGGAATATGTTTGACGTTG 59.566 43.478 0.00 0.00 34.43 4.10
483 511 3.434299 GGACGGAATATGTTTGACGTTGT 59.566 43.478 0.00 0.00 34.43 3.32
484 512 4.435121 GGACGGAATATGTTTGACGTTGTC 60.435 45.833 0.00 0.00 34.43 3.18
485 513 3.434299 ACGGAATATGTTTGACGTTGTCC 59.566 43.478 0.00 0.00 0.00 4.02
499 527 1.040646 TTGTCCTCGTCTTGCAGACT 58.959 50.000 12.45 0.00 42.92 3.24
510 538 3.361724 GTCTTGCAGACTCGTAAAACACG 60.362 47.826 8.50 0.00 42.78 4.49
581 609 2.169832 GCCTGTGCTTCACTGTAAGA 57.830 50.000 0.00 0.00 35.11 2.10
598 626 5.119694 TGTAAGACACACAAATACTGCACA 58.880 37.500 0.00 0.00 30.04 4.57
692 747 2.045926 GCCTCAACATCTGGCCGT 60.046 61.111 0.00 0.00 40.71 5.68
804 895 0.306840 CGATCGCGCTGGAGTAGTTA 59.693 55.000 5.56 0.00 0.00 2.24
937 1028 3.717400 ATCTAGAGCAGAATTTCGCGA 57.283 42.857 3.71 3.71 36.67 5.87
999 1090 1.616628 ACTCCCCTTCCCTTCGCAT 60.617 57.895 0.00 0.00 0.00 4.73
1024 1118 3.507009 CGTCGGAGGGACCTCGTC 61.507 72.222 11.97 4.56 42.99 4.20
1029 1123 3.507009 GAGGGACCTCGTCGTCGG 61.507 72.222 2.05 0.00 37.69 4.79
1050 1144 2.047274 CGGGGCAAGAAGAGCGAA 60.047 61.111 0.00 0.00 0.00 4.70
1110 1204 3.075641 GAGGACCTCCCCGACCAC 61.076 72.222 10.74 0.00 36.42 4.16
1129 1223 0.673437 CCTCTTCGAGCTCATCCTCC 59.327 60.000 15.40 0.00 0.00 4.30
1532 1626 1.437986 CGGAGGATCTGGACGGAAC 59.562 63.158 0.00 0.00 38.01 3.62
1656 1750 2.285368 TTCTCCACGGGCAGGGAT 60.285 61.111 0.00 0.00 31.57 3.85
1801 1898 1.291877 CGTTCTTGCCCTTGACGAGG 61.292 60.000 1.08 1.08 45.86 4.63
1965 2065 2.264480 CATCCGGGCAGTGACGAA 59.736 61.111 0.00 0.00 0.00 3.85
1975 2075 1.354040 CAGTGACGAAGATGAGTGGC 58.646 55.000 0.00 0.00 0.00 5.01
1994 2094 2.295602 TGCTGGAGATGCAGCTGGA 61.296 57.895 23.96 14.45 44.19 3.86
2107 2207 1.153939 CTGACACCGAGCGAGAAGG 60.154 63.158 0.00 0.00 0.00 3.46
2115 2215 1.214589 GAGCGAGAAGGCGTGGTTA 59.785 57.895 0.00 0.00 38.18 2.85
2245 2345 1.383803 GGCAGGGAGAGGAGGTGAT 60.384 63.158 0.00 0.00 0.00 3.06
2246 2346 1.694133 GGCAGGGAGAGGAGGTGATG 61.694 65.000 0.00 0.00 0.00 3.07
2247 2347 0.689080 GCAGGGAGAGGAGGTGATGA 60.689 60.000 0.00 0.00 0.00 2.92
2284 2384 1.073025 ATGGCTGCCGACTTTGTCA 59.927 52.632 14.98 0.00 32.09 3.58
2285 2385 0.322816 ATGGCTGCCGACTTTGTCAT 60.323 50.000 14.98 0.00 32.09 3.06
2286 2386 0.955428 TGGCTGCCGACTTTGTCATC 60.955 55.000 14.98 0.00 32.09 2.92
2287 2387 0.955428 GGCTGCCGACTTTGTCATCA 60.955 55.000 1.35 0.00 32.09 3.07
2288 2388 1.089920 GCTGCCGACTTTGTCATCAT 58.910 50.000 0.00 0.00 32.09 2.45
2290 2390 2.286294 GCTGCCGACTTTGTCATCATAG 59.714 50.000 0.00 0.00 32.09 2.23
2291 2391 2.279741 TGCCGACTTTGTCATCATAGC 58.720 47.619 0.00 0.00 32.09 2.97
2292 2392 2.279741 GCCGACTTTGTCATCATAGCA 58.720 47.619 0.00 0.00 32.09 3.49
2293 2393 2.286294 GCCGACTTTGTCATCATAGCAG 59.714 50.000 0.00 0.00 32.09 4.24
2294 2394 3.785486 CCGACTTTGTCATCATAGCAGA 58.215 45.455 0.00 0.00 32.09 4.26
2295 2395 3.553511 CCGACTTTGTCATCATAGCAGAC 59.446 47.826 0.00 0.00 32.09 3.51
2360 2460 5.754543 TTTCAAAAGGTTATCCGTTTCGT 57.245 34.783 1.25 0.00 41.91 3.85
2391 2491 7.701539 TGGAACAGATTTGCACTATTTGTAT 57.298 32.000 5.04 0.00 0.00 2.29
2392 2492 8.121305 TGGAACAGATTTGCACTATTTGTATT 57.879 30.769 5.04 0.00 0.00 1.89
2441 2670 0.538287 ACTCTGTTCTTTGGGCCAGC 60.538 55.000 6.23 0.00 0.00 4.85
2448 2677 1.216178 CTTTGGGCCAGCCGATTTG 59.784 57.895 6.23 0.00 36.85 2.32
2464 2693 3.851403 CGATTTGTTATTGGGCTGAAACG 59.149 43.478 0.00 0.00 0.00 3.60
2544 2810 6.642733 ATAGGGGTATATTCAGGATGTTGG 57.357 41.667 0.00 0.00 37.40 3.77
2564 2830 9.679661 ATGTTGGATGAGTGTAAAATGTATACA 57.320 29.630 8.27 8.27 0.00 2.29
2662 2928 9.357161 TGTACATATTAAAAAGTCCCAAGTTGT 57.643 29.630 1.45 0.00 0.00 3.32
2663 2929 9.620660 GTACATATTAAAAAGTCCCAAGTTGTG 57.379 33.333 1.45 0.00 0.00 3.33
2664 2930 7.151976 ACATATTAAAAAGTCCCAAGTTGTGC 58.848 34.615 1.45 0.00 0.00 4.57
2665 2931 2.577449 AAAAAGTCCCAAGTTGTGCG 57.423 45.000 1.45 0.00 0.00 5.34
2666 2932 0.744281 AAAAGTCCCAAGTTGTGCGG 59.256 50.000 1.45 0.00 0.00 5.69
2667 2933 0.106918 AAAGTCCCAAGTTGTGCGGA 60.107 50.000 1.45 0.00 0.00 5.54
2668 2934 0.106918 AAGTCCCAAGTTGTGCGGAA 60.107 50.000 1.45 0.00 30.95 4.30
2669 2935 0.535102 AGTCCCAAGTTGTGCGGAAG 60.535 55.000 1.45 0.00 30.95 3.46
2670 2936 0.818040 GTCCCAAGTTGTGCGGAAGT 60.818 55.000 1.45 0.00 30.95 3.01
2671 2937 0.106918 TCCCAAGTTGTGCGGAAGTT 60.107 50.000 1.45 0.00 0.00 2.66
2672 2938 0.744281 CCCAAGTTGTGCGGAAGTTT 59.256 50.000 1.45 0.00 0.00 2.66
2673 2939 1.136110 CCCAAGTTGTGCGGAAGTTTT 59.864 47.619 1.45 0.00 0.00 2.43
2674 2940 2.418060 CCCAAGTTGTGCGGAAGTTTTT 60.418 45.455 1.45 0.00 0.00 1.94
2704 2970 9.566432 AGTGTTTGTTTCATTCTTCTATCTTCT 57.434 29.630 0.00 0.00 0.00 2.85
2726 2992 8.652810 TTCTTAAAGGGTAATACTAATGACGC 57.347 34.615 0.00 0.00 30.91 5.19
2727 2993 8.015185 TCTTAAAGGGTAATACTAATGACGCT 57.985 34.615 0.00 0.00 40.62 5.07
2728 2994 9.135189 TCTTAAAGGGTAATACTAATGACGCTA 57.865 33.333 0.00 0.00 38.50 4.26
2729 2995 9.754382 CTTAAAGGGTAATACTAATGACGCTAA 57.246 33.333 0.00 0.00 38.50 3.09
2732 2998 8.828688 AAGGGTAATACTAATGACGCTAATTC 57.171 34.615 0.00 0.00 38.50 2.17
2733 2999 7.959175 AGGGTAATACTAATGACGCTAATTCA 58.041 34.615 0.00 0.00 37.85 2.57
2734 3000 8.594550 AGGGTAATACTAATGACGCTAATTCAT 58.405 33.333 0.00 0.00 37.85 2.57
2735 3001 9.216117 GGGTAATACTAATGACGCTAATTCATT 57.784 33.333 3.98 3.98 44.24 2.57
2740 3006 7.948278 ACTAATGACGCTAATTCATTCTACC 57.052 36.000 1.86 0.00 41.73 3.18
2741 3007 7.727181 ACTAATGACGCTAATTCATTCTACCT 58.273 34.615 1.86 0.00 41.73 3.08
2742 3008 7.868415 ACTAATGACGCTAATTCATTCTACCTC 59.132 37.037 1.86 0.00 41.73 3.85
2743 3009 5.854010 TGACGCTAATTCATTCTACCTCT 57.146 39.130 0.00 0.00 0.00 3.69
2744 3010 6.222038 TGACGCTAATTCATTCTACCTCTT 57.778 37.500 0.00 0.00 0.00 2.85
2745 3011 6.273825 TGACGCTAATTCATTCTACCTCTTC 58.726 40.000 0.00 0.00 0.00 2.87
2746 3012 6.127451 TGACGCTAATTCATTCTACCTCTTCA 60.127 38.462 0.00 0.00 0.00 3.02
2747 3013 6.821388 ACGCTAATTCATTCTACCTCTTCAT 58.179 36.000 0.00 0.00 0.00 2.57
2748 3014 7.275920 ACGCTAATTCATTCTACCTCTTCATT 58.724 34.615 0.00 0.00 0.00 2.57
2749 3015 7.770897 ACGCTAATTCATTCTACCTCTTCATTT 59.229 33.333 0.00 0.00 0.00 2.32
2750 3016 8.616076 CGCTAATTCATTCTACCTCTTCATTTT 58.384 33.333 0.00 0.00 0.00 1.82
2751 3017 9.943163 GCTAATTCATTCTACCTCTTCATTTTC 57.057 33.333 0.00 0.00 0.00 2.29
2760 3026 9.847224 TTCTACCTCTTCATTTTCTTAAGTGTT 57.153 29.630 1.63 0.00 0.00 3.32
2761 3027 9.273016 TCTACCTCTTCATTTTCTTAAGTGTTG 57.727 33.333 1.63 0.00 0.00 3.33
2762 3028 7.277174 ACCTCTTCATTTTCTTAAGTGTTGG 57.723 36.000 1.63 0.00 0.00 3.77
2763 3029 6.833933 ACCTCTTCATTTTCTTAAGTGTTGGT 59.166 34.615 1.63 0.00 0.00 3.67
2764 3030 7.996644 ACCTCTTCATTTTCTTAAGTGTTGGTA 59.003 33.333 1.63 0.00 0.00 3.25
2765 3031 9.014297 CCTCTTCATTTTCTTAAGTGTTGGTAT 57.986 33.333 1.63 0.00 0.00 2.73
2767 3033 9.567776 TCTTCATTTTCTTAAGTGTTGGTATCA 57.432 29.630 1.63 0.00 0.00 2.15
2780 3046 7.886338 AGTGTTGGTATCATTTTCTTTCTTCC 58.114 34.615 0.00 0.00 0.00 3.46
2781 3047 7.505585 AGTGTTGGTATCATTTTCTTTCTTCCA 59.494 33.333 0.00 0.00 0.00 3.53
2782 3048 8.306761 GTGTTGGTATCATTTTCTTTCTTCCAT 58.693 33.333 0.00 0.00 0.00 3.41
2783 3049 9.527157 TGTTGGTATCATTTTCTTTCTTCCATA 57.473 29.630 0.00 0.00 0.00 2.74
2786 3052 9.189156 TGGTATCATTTTCTTTCTTCCATAAGG 57.811 33.333 0.00 0.00 33.22 2.69
2787 3053 8.138074 GGTATCATTTTCTTTCTTCCATAAGGC 58.862 37.037 0.00 0.00 33.22 4.35
2788 3054 6.530019 TCATTTTCTTTCTTCCATAAGGCC 57.470 37.500 0.00 0.00 33.22 5.19
2789 3055 6.015918 TCATTTTCTTTCTTCCATAAGGCCA 58.984 36.000 5.01 0.00 33.22 5.36
2790 3056 6.669154 TCATTTTCTTTCTTCCATAAGGCCAT 59.331 34.615 5.01 0.00 33.22 4.40
2791 3057 7.838696 TCATTTTCTTTCTTCCATAAGGCCATA 59.161 33.333 5.01 0.00 33.22 2.74
2792 3058 8.477256 CATTTTCTTTCTTCCATAAGGCCATAA 58.523 33.333 5.01 0.00 33.22 1.90
2793 3059 7.645058 TTTCTTTCTTCCATAAGGCCATAAG 57.355 36.000 5.01 0.00 33.22 1.73
2794 3060 5.694995 TCTTTCTTCCATAAGGCCATAAGG 58.305 41.667 5.01 3.71 33.22 2.69
2795 3061 4.453480 TTCTTCCATAAGGCCATAAGGG 57.547 45.455 5.01 3.95 40.85 3.95
2796 3062 3.403322 TCTTCCATAAGGCCATAAGGGT 58.597 45.455 5.01 0.00 39.65 4.34
2797 3063 4.572978 TCTTCCATAAGGCCATAAGGGTA 58.427 43.478 5.01 0.00 39.65 3.69
2798 3064 4.979039 TCTTCCATAAGGCCATAAGGGTAA 59.021 41.667 5.01 0.00 39.65 2.85
2799 3065 5.615261 TCTTCCATAAGGCCATAAGGGTAAT 59.385 40.000 5.01 0.00 39.65 1.89
2800 3066 6.795507 TCTTCCATAAGGCCATAAGGGTAATA 59.204 38.462 5.01 0.00 39.65 0.98
2801 3067 7.464265 TCTTCCATAAGGCCATAAGGGTAATAT 59.536 37.037 5.01 0.00 39.65 1.28
2802 3068 7.208064 TCCATAAGGCCATAAGGGTAATATC 57.792 40.000 5.01 0.00 39.65 1.63
2803 3069 6.738086 TCCATAAGGCCATAAGGGTAATATCA 59.262 38.462 5.01 0.00 39.65 2.15
2804 3070 7.240828 TCCATAAGGCCATAAGGGTAATATCAA 59.759 37.037 5.01 0.00 39.65 2.57
2805 3071 8.061304 CCATAAGGCCATAAGGGTAATATCAAT 58.939 37.037 5.01 0.00 39.65 2.57
2806 3072 8.906867 CATAAGGCCATAAGGGTAATATCAATG 58.093 37.037 5.01 0.00 39.65 2.82
2807 3073 5.264395 AGGCCATAAGGGTAATATCAATGC 58.736 41.667 5.01 0.00 39.65 3.56
2808 3074 4.402474 GGCCATAAGGGTAATATCAATGCC 59.598 45.833 0.00 0.00 39.65 4.40
2809 3075 5.016173 GCCATAAGGGTAATATCAATGCCA 58.984 41.667 0.00 0.00 39.65 4.92
2810 3076 5.105756 GCCATAAGGGTAATATCAATGCCAC 60.106 44.000 0.00 0.00 39.65 5.01
2811 3077 6.248433 CCATAAGGGTAATATCAATGCCACT 58.752 40.000 0.00 0.00 0.00 4.00
2812 3078 7.402054 CCATAAGGGTAATATCAATGCCACTA 58.598 38.462 0.00 0.00 0.00 2.74
2813 3079 7.888021 CCATAAGGGTAATATCAATGCCACTAA 59.112 37.037 0.00 0.00 0.00 2.24
2814 3080 9.466497 CATAAGGGTAATATCAATGCCACTAAT 57.534 33.333 0.00 0.00 0.00 1.73
2816 3082 8.782137 AAGGGTAATATCAATGCCACTAATTT 57.218 30.769 0.00 0.00 0.00 1.82
2817 3083 9.875708 AAGGGTAATATCAATGCCACTAATTTA 57.124 29.630 0.00 0.00 0.00 1.40
2871 3137 8.553459 AGTGCCACTATTATATGTATTCTTGC 57.447 34.615 0.00 0.00 0.00 4.01
2872 3138 8.156820 AGTGCCACTATTATATGTATTCTTGCA 58.843 33.333 0.00 0.00 0.00 4.08
2873 3139 8.950210 GTGCCACTATTATATGTATTCTTGCAT 58.050 33.333 0.00 0.00 32.52 3.96
2908 3174 8.506140 ACATAATTTATGCGTAAATCATGTGC 57.494 30.769 28.15 0.00 43.06 4.57
2909 3175 8.134261 ACATAATTTATGCGTAAATCATGTGCA 58.866 29.630 28.15 10.10 43.06 4.57
2910 3176 8.966194 CATAATTTATGCGTAAATCATGTGCAA 58.034 29.630 21.27 4.15 39.09 4.08
2911 3177 7.824704 AATTTATGCGTAAATCATGTGCAAA 57.175 28.000 21.27 0.00 39.09 3.68
2912 3178 7.824704 ATTTATGCGTAAATCATGTGCAAAA 57.175 28.000 16.57 0.00 36.06 2.44
2913 3179 7.824704 TTTATGCGTAAATCATGTGCAAAAT 57.175 28.000 7.03 0.00 39.26 1.82
2914 3180 7.824704 TTATGCGTAAATCATGTGCAAAATT 57.175 28.000 0.00 0.00 39.26 1.82
2915 3181 6.724694 ATGCGTAAATCATGTGCAAAATTT 57.275 29.167 0.00 0.00 39.26 1.82
2916 3182 6.536731 TGCGTAAATCATGTGCAAAATTTT 57.463 29.167 0.00 0.00 31.69 1.82
2917 3183 6.952743 TGCGTAAATCATGTGCAAAATTTTT 58.047 28.000 0.00 0.00 31.69 1.94
2918 3184 7.068341 TGCGTAAATCATGTGCAAAATTTTTC 58.932 30.769 0.00 0.00 31.69 2.29
2919 3185 7.068341 GCGTAAATCATGTGCAAAATTTTTCA 58.932 30.769 0.00 0.00 0.00 2.69
2920 3186 7.745594 GCGTAAATCATGTGCAAAATTTTTCAT 59.254 29.630 6.54 6.81 0.00 2.57
2921 3187 9.596677 CGTAAATCATGTGCAAAATTTTTCATT 57.403 25.926 6.54 0.00 0.00 2.57
2979 3245 7.096884 CTTCTTAAAGGGTAATACCAAAGCC 57.903 40.000 12.03 0.00 41.02 4.35
2980 3246 6.142259 TCTTAAAGGGTAATACCAAAGCCA 57.858 37.500 12.03 0.00 41.02 4.75
2981 3247 5.947566 TCTTAAAGGGTAATACCAAAGCCAC 59.052 40.000 12.03 0.00 41.02 5.01
2982 3248 4.397919 AAAGGGTAATACCAAAGCCACT 57.602 40.909 12.03 0.00 41.02 4.00
2983 3249 5.523883 AAAGGGTAATACCAAAGCCACTA 57.476 39.130 12.03 0.00 41.02 2.74
2984 3250 5.523883 AAGGGTAATACCAAAGCCACTAA 57.476 39.130 12.03 0.00 41.02 2.24
2985 3251 5.727243 AGGGTAATACCAAAGCCACTAAT 57.273 39.130 12.03 0.00 41.02 1.73
2986 3252 6.087276 AGGGTAATACCAAAGCCACTAATT 57.913 37.500 12.03 0.00 41.02 1.40
2987 3253 6.127101 AGGGTAATACCAAAGCCACTAATTC 58.873 40.000 12.03 0.00 41.02 2.17
2988 3254 5.889289 GGGTAATACCAAAGCCACTAATTCA 59.111 40.000 12.03 0.00 41.02 2.57
2989 3255 6.549736 GGGTAATACCAAAGCCACTAATTCAT 59.450 38.462 12.03 0.00 41.02 2.57
2990 3256 7.069455 GGGTAATACCAAAGCCACTAATTCATT 59.931 37.037 12.03 0.00 41.02 2.57
2991 3257 8.135529 GGTAATACCAAAGCCACTAATTCATTC 58.864 37.037 4.24 0.00 38.42 2.67
2992 3258 7.961326 AATACCAAAGCCACTAATTCATTCT 57.039 32.000 0.00 0.00 0.00 2.40
2993 3259 7.961326 ATACCAAAGCCACTAATTCATTCTT 57.039 32.000 0.00 0.00 0.00 2.52
2994 3260 6.272822 ACCAAAGCCACTAATTCATTCTTC 57.727 37.500 0.00 0.00 0.00 2.87
2995 3261 5.185828 ACCAAAGCCACTAATTCATTCTTCC 59.814 40.000 0.00 0.00 0.00 3.46
2996 3262 5.420104 CCAAAGCCACTAATTCATTCTTCCT 59.580 40.000 0.00 0.00 0.00 3.36
2997 3263 6.071165 CCAAAGCCACTAATTCATTCTTCCTT 60.071 38.462 0.00 0.00 0.00 3.36
2998 3264 7.122650 CCAAAGCCACTAATTCATTCTTCCTTA 59.877 37.037 0.00 0.00 0.00 2.69
2999 3265 7.872113 AAGCCACTAATTCATTCTTCCTTAG 57.128 36.000 0.00 0.00 0.00 2.18
3000 3266 7.200434 AGCCACTAATTCATTCTTCCTTAGA 57.800 36.000 0.00 0.00 0.00 2.10
3001 3267 7.633789 AGCCACTAATTCATTCTTCCTTAGAA 58.366 34.615 0.00 0.00 46.50 2.10
3002 3268 8.109634 AGCCACTAATTCATTCTTCCTTAGAAA 58.890 33.333 0.00 0.00 45.62 2.52
3003 3269 8.739972 GCCACTAATTCATTCTTCCTTAGAAAA 58.260 33.333 0.00 0.00 45.62 2.29
3136 3402 8.894409 TTTTGCTTCATTGTAAATATCAGACG 57.106 30.769 0.00 0.00 0.00 4.18
3137 3403 6.603237 TGCTTCATTGTAAATATCAGACGG 57.397 37.500 0.00 0.00 0.00 4.79
3138 3404 6.345298 TGCTTCATTGTAAATATCAGACGGA 58.655 36.000 0.00 0.00 0.00 4.69
3139 3405 6.821160 TGCTTCATTGTAAATATCAGACGGAA 59.179 34.615 0.00 0.00 0.00 4.30
3140 3406 7.335673 TGCTTCATTGTAAATATCAGACGGAAA 59.664 33.333 0.00 0.00 0.00 3.13
3141 3407 7.640240 GCTTCATTGTAAATATCAGACGGAAAC 59.360 37.037 0.00 0.00 0.00 2.78
3142 3408 7.548196 TCATTGTAAATATCAGACGGAAACC 57.452 36.000 0.00 0.00 0.00 3.27
3143 3409 7.106890 TCATTGTAAATATCAGACGGAAACCA 58.893 34.615 0.00 0.00 0.00 3.67
3144 3410 7.608376 TCATTGTAAATATCAGACGGAAACCAA 59.392 33.333 0.00 0.00 0.00 3.67
3145 3411 7.931578 TTGTAAATATCAGACGGAAACCAAT 57.068 32.000 0.00 0.00 0.00 3.16
3146 3412 7.931578 TGTAAATATCAGACGGAAACCAATT 57.068 32.000 0.00 0.00 0.00 2.32
3147 3413 7.981142 TGTAAATATCAGACGGAAACCAATTC 58.019 34.615 0.00 0.00 37.31 2.17
3148 3414 5.734855 AATATCAGACGGAAACCAATTCG 57.265 39.130 0.00 0.00 39.05 3.34
3149 3415 2.823924 TCAGACGGAAACCAATTCGA 57.176 45.000 0.00 0.00 39.05 3.71
3150 3416 3.328382 TCAGACGGAAACCAATTCGAT 57.672 42.857 0.00 0.00 39.05 3.59
3151 3417 3.000041 TCAGACGGAAACCAATTCGATG 59.000 45.455 0.00 0.00 39.05 3.84
3152 3418 2.095853 CAGACGGAAACCAATTCGATGG 59.904 50.000 3.43 3.43 46.38 3.51
3153 3419 2.027561 AGACGGAAACCAATTCGATGGA 60.028 45.455 12.02 0.00 43.54 3.41
3154 3420 2.745281 GACGGAAACCAATTCGATGGAA 59.255 45.455 12.02 0.00 43.54 3.53
3155 3421 3.150767 ACGGAAACCAATTCGATGGAAA 58.849 40.909 12.02 0.00 43.54 3.13
3156 3422 3.057806 ACGGAAACCAATTCGATGGAAAC 60.058 43.478 12.02 2.68 43.54 2.78
3157 3423 3.672241 CGGAAACCAATTCGATGGAAACC 60.672 47.826 12.02 9.64 43.54 3.27
3158 3424 3.257127 GGAAACCAATTCGATGGAAACCA 59.743 43.478 12.02 0.00 43.54 3.67
3159 3425 4.485163 GAAACCAATTCGATGGAAACCAG 58.515 43.478 12.02 0.00 43.54 4.00
3160 3426 3.154827 ACCAATTCGATGGAAACCAGT 57.845 42.857 12.02 0.00 43.54 4.00
3161 3427 2.819608 ACCAATTCGATGGAAACCAGTG 59.180 45.455 12.02 0.00 43.54 3.66
3162 3428 3.081061 CCAATTCGATGGAAACCAGTGA 58.919 45.455 0.00 0.00 43.54 3.41
3163 3429 3.505680 CCAATTCGATGGAAACCAGTGAA 59.494 43.478 0.00 0.00 43.54 3.18
3164 3430 4.022416 CCAATTCGATGGAAACCAGTGAAA 60.022 41.667 0.00 0.00 43.54 2.69
3165 3431 5.508825 CCAATTCGATGGAAACCAGTGAAAA 60.509 40.000 0.00 0.00 43.54 2.29
3166 3432 5.782893 ATTCGATGGAAACCAGTGAAAAA 57.217 34.783 10.07 0.00 36.75 1.94
3167 3433 4.561735 TCGATGGAAACCAGTGAAAAAC 57.438 40.909 0.00 0.00 36.75 2.43
3168 3434 3.316868 TCGATGGAAACCAGTGAAAAACC 59.683 43.478 0.00 0.00 36.75 3.27
3169 3435 3.067461 CGATGGAAACCAGTGAAAAACCA 59.933 43.478 0.00 0.00 36.75 3.67
3170 3436 4.620982 GATGGAAACCAGTGAAAAACCAG 58.379 43.478 0.00 0.00 36.75 4.00
3171 3437 3.702792 TGGAAACCAGTGAAAAACCAGA 58.297 40.909 0.00 0.00 0.00 3.86
3172 3438 4.090090 TGGAAACCAGTGAAAAACCAGAA 58.910 39.130 0.00 0.00 0.00 3.02
3173 3439 4.159506 TGGAAACCAGTGAAAAACCAGAAG 59.840 41.667 0.00 0.00 0.00 2.85
3174 3440 4.401202 GGAAACCAGTGAAAAACCAGAAGA 59.599 41.667 0.00 0.00 0.00 2.87
3175 3441 5.105513 GGAAACCAGTGAAAAACCAGAAGAA 60.106 40.000 0.00 0.00 0.00 2.52
3176 3442 5.993748 AACCAGTGAAAAACCAGAAGAAA 57.006 34.783 0.00 0.00 0.00 2.52
3177 3443 5.993748 ACCAGTGAAAAACCAGAAGAAAA 57.006 34.783 0.00 0.00 0.00 2.29
3178 3444 5.965922 ACCAGTGAAAAACCAGAAGAAAAG 58.034 37.500 0.00 0.00 0.00 2.27
3179 3445 5.714806 ACCAGTGAAAAACCAGAAGAAAAGA 59.285 36.000 0.00 0.00 0.00 2.52
3180 3446 6.381133 ACCAGTGAAAAACCAGAAGAAAAGAT 59.619 34.615 0.00 0.00 0.00 2.40
3181 3447 7.559897 ACCAGTGAAAAACCAGAAGAAAAGATA 59.440 33.333 0.00 0.00 0.00 1.98
3182 3448 8.579863 CCAGTGAAAAACCAGAAGAAAAGATAT 58.420 33.333 0.00 0.00 0.00 1.63
3183 3449 9.971922 CAGTGAAAAACCAGAAGAAAAGATATT 57.028 29.630 0.00 0.00 0.00 1.28
3238 3504 7.636150 CAGGATGTTAAGAGGATGATGTTTT 57.364 36.000 0.00 0.00 0.00 2.43
3239 3505 8.737168 CAGGATGTTAAGAGGATGATGTTTTA 57.263 34.615 0.00 0.00 0.00 1.52
3240 3506 9.347240 CAGGATGTTAAGAGGATGATGTTTTAT 57.653 33.333 0.00 0.00 0.00 1.40
3241 3507 9.927081 AGGATGTTAAGAGGATGATGTTTTATT 57.073 29.630 0.00 0.00 0.00 1.40
3242 3508 9.956720 GGATGTTAAGAGGATGATGTTTTATTG 57.043 33.333 0.00 0.00 0.00 1.90
3243 3509 9.455847 GATGTTAAGAGGATGATGTTTTATTGC 57.544 33.333 0.00 0.00 0.00 3.56
3244 3510 7.771183 TGTTAAGAGGATGATGTTTTATTGCC 58.229 34.615 0.00 0.00 0.00 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 5.808042 ACGATACGTCATTAGTGTACTGT 57.192 39.130 0.00 0.00 33.69 3.55
25 26 8.778141 AAATACGATACGTCATTAGTGTACTG 57.222 34.615 0.00 0.00 41.54 2.74
26 27 9.793252 AAAAATACGATACGTCATTAGTGTACT 57.207 29.630 0.00 0.00 41.54 2.73
60 61 9.525409 GCATGCTTCTTGTAATTAATCTTCAAT 57.475 29.630 11.37 0.00 0.00 2.57
62 63 7.416664 GGGCATGCTTCTTGTAATTAATCTTCA 60.417 37.037 18.92 0.00 0.00 3.02
67 68 4.037923 CGGGGCATGCTTCTTGTAATTAAT 59.962 41.667 18.92 0.00 0.00 1.40
82 83 0.250295 ATGTTCGTATCCGGGGCATG 60.250 55.000 0.00 0.00 33.95 4.06
83 84 0.472471 AATGTTCGTATCCGGGGCAT 59.528 50.000 0.00 0.00 33.95 4.40
85 86 0.179067 TGAATGTTCGTATCCGGGGC 60.179 55.000 0.00 0.00 33.95 5.80
88 89 1.217882 GCCTGAATGTTCGTATCCGG 58.782 55.000 0.00 0.00 33.95 5.14
89 90 1.860950 CTGCCTGAATGTTCGTATCCG 59.139 52.381 0.00 0.00 0.00 4.18
91 92 2.535984 CGTCTGCCTGAATGTTCGTATC 59.464 50.000 0.00 0.00 0.00 2.24
94 95 1.291877 GCGTCTGCCTGAATGTTCGT 61.292 55.000 0.00 0.00 33.98 3.85
95 96 1.421485 GCGTCTGCCTGAATGTTCG 59.579 57.895 0.00 0.00 33.98 3.95
144 145 3.830755 TGAGGAGTTAGCTTAACGTTCCT 59.169 43.478 2.82 0.74 42.60 3.36
150 151 7.203255 ACAATTTGTGAGGAGTTAGCTTAAC 57.797 36.000 0.15 0.00 38.94 2.01
151 152 7.284489 ACAACAATTTGTGAGGAGTTAGCTTAA 59.716 33.333 2.13 0.00 44.66 1.85
174 175 4.562963 GGTGTTGGTTTTGGTGGTTTACAA 60.563 41.667 0.00 0.00 0.00 2.41
188 189 1.395635 GAGGAAAACGGGTGTTGGTT 58.604 50.000 0.00 0.00 38.62 3.67
192 193 0.549469 AGTGGAGGAAAACGGGTGTT 59.451 50.000 0.00 0.00 40.98 3.32
193 194 0.108019 GAGTGGAGGAAAACGGGTGT 59.892 55.000 0.00 0.00 0.00 4.16
194 195 0.107831 TGAGTGGAGGAAAACGGGTG 59.892 55.000 0.00 0.00 0.00 4.61
195 196 0.396811 CTGAGTGGAGGAAAACGGGT 59.603 55.000 0.00 0.00 0.00 5.28
196 197 0.955919 GCTGAGTGGAGGAAAACGGG 60.956 60.000 0.00 0.00 0.00 5.28
197 198 0.250295 TGCTGAGTGGAGGAAAACGG 60.250 55.000 0.00 0.00 0.00 4.44
198 199 1.264288 GTTGCTGAGTGGAGGAAAACG 59.736 52.381 0.00 0.00 0.00 3.60
199 200 1.609072 GGTTGCTGAGTGGAGGAAAAC 59.391 52.381 0.00 0.00 0.00 2.43
200 201 1.494721 AGGTTGCTGAGTGGAGGAAAA 59.505 47.619 0.00 0.00 0.00 2.29
201 202 1.072331 GAGGTTGCTGAGTGGAGGAAA 59.928 52.381 0.00 0.00 0.00 3.13
202 203 0.687354 GAGGTTGCTGAGTGGAGGAA 59.313 55.000 0.00 0.00 0.00 3.36
203 204 0.471780 TGAGGTTGCTGAGTGGAGGA 60.472 55.000 0.00 0.00 0.00 3.71
204 205 0.617413 ATGAGGTTGCTGAGTGGAGG 59.383 55.000 0.00 0.00 0.00 4.30
205 206 1.406614 GGATGAGGTTGCTGAGTGGAG 60.407 57.143 0.00 0.00 0.00 3.86
206 207 0.615331 GGATGAGGTTGCTGAGTGGA 59.385 55.000 0.00 0.00 0.00 4.02
207 208 0.325933 TGGATGAGGTTGCTGAGTGG 59.674 55.000 0.00 0.00 0.00 4.00
208 209 1.735386 CTGGATGAGGTTGCTGAGTG 58.265 55.000 0.00 0.00 0.00 3.51
209 210 0.035630 GCTGGATGAGGTTGCTGAGT 60.036 55.000 0.00 0.00 0.00 3.41
210 211 0.035725 TGCTGGATGAGGTTGCTGAG 60.036 55.000 0.00 0.00 0.00 3.35
211 212 0.321919 GTGCTGGATGAGGTTGCTGA 60.322 55.000 0.00 0.00 0.00 4.26
212 213 1.642037 CGTGCTGGATGAGGTTGCTG 61.642 60.000 0.00 0.00 0.00 4.41
213 214 1.376424 CGTGCTGGATGAGGTTGCT 60.376 57.895 0.00 0.00 0.00 3.91
214 215 1.672356 ACGTGCTGGATGAGGTTGC 60.672 57.895 0.00 0.00 0.00 4.17
215 216 0.320683 TCACGTGCTGGATGAGGTTG 60.321 55.000 11.67 0.00 0.00 3.77
216 217 0.396435 TTCACGTGCTGGATGAGGTT 59.604 50.000 11.67 0.00 0.00 3.50
217 218 0.036952 CTTCACGTGCTGGATGAGGT 60.037 55.000 11.67 0.00 0.00 3.85
218 219 0.036952 ACTTCACGTGCTGGATGAGG 60.037 55.000 11.67 0.00 0.00 3.86
219 220 1.073964 CACTTCACGTGCTGGATGAG 58.926 55.000 11.67 2.52 36.72 2.90
220 221 0.678950 TCACTTCACGTGCTGGATGA 59.321 50.000 11.67 7.16 43.46 2.92
221 222 1.730501 ATCACTTCACGTGCTGGATG 58.269 50.000 11.67 4.80 43.46 3.51
222 223 2.739932 GCTATCACTTCACGTGCTGGAT 60.740 50.000 11.67 12.89 43.46 3.41
223 224 1.404181 GCTATCACTTCACGTGCTGGA 60.404 52.381 11.67 6.09 43.46 3.86
224 225 1.002366 GCTATCACTTCACGTGCTGG 58.998 55.000 11.67 5.70 43.46 4.85
227 228 1.345176 GCGCTATCACTTCACGTGC 59.655 57.895 11.67 0.00 43.46 5.34
237 238 0.320050 TGTCACCAACTGCGCTATCA 59.680 50.000 9.73 0.00 0.00 2.15
238 239 1.656652 ATGTCACCAACTGCGCTATC 58.343 50.000 9.73 0.00 0.00 2.08
243 244 2.118683 CAACAAATGTCACCAACTGCG 58.881 47.619 0.00 0.00 0.00 5.18
247 248 2.116366 GACGCAACAAATGTCACCAAC 58.884 47.619 0.00 0.00 32.91 3.77
249 250 1.383523 TGACGCAACAAATGTCACCA 58.616 45.000 0.00 0.00 37.69 4.17
272 273 7.597743 AGGAGTGTAATGTTAGAGTGTTTAACG 59.402 37.037 0.00 0.00 34.51 3.18
282 283 9.042450 TCTTTATGGAAGGAGTGTAATGTTAGA 57.958 33.333 0.00 0.00 35.98 2.10
284 285 9.832445 GATCTTTATGGAAGGAGTGTAATGTTA 57.168 33.333 0.00 0.00 35.98 2.41
289 290 6.823689 GCTTGATCTTTATGGAAGGAGTGTAA 59.176 38.462 0.00 0.00 35.98 2.41
293 294 4.228210 TGGCTTGATCTTTATGGAAGGAGT 59.772 41.667 0.00 0.00 35.98 3.85
296 297 4.280174 CCATGGCTTGATCTTTATGGAAGG 59.720 45.833 0.00 0.00 37.79 3.46
300 301 2.298163 GGCCATGGCTTGATCTTTATGG 59.702 50.000 34.70 0.00 41.60 2.74
305 306 1.760613 CATTGGCCATGGCTTGATCTT 59.239 47.619 34.70 11.28 41.60 2.40
309 310 0.542467 ACACATTGGCCATGGCTTGA 60.542 50.000 34.70 21.07 41.60 3.02
317 318 1.971167 GGCTTCGACACATTGGCCA 60.971 57.895 0.00 0.00 39.38 5.36
342 349 3.350833 GAGAAACTTCATGGGCACAGAT 58.649 45.455 0.00 0.00 0.00 2.90
347 354 1.988107 AGAGGAGAAACTTCATGGGCA 59.012 47.619 0.00 0.00 0.00 5.36
352 359 3.796111 TCAGGGAGAGGAGAAACTTCAT 58.204 45.455 0.00 0.00 0.00 2.57
360 367 1.006519 CAGGTCTTCAGGGAGAGGAGA 59.993 57.143 0.00 0.00 32.40 3.71
369 376 0.320771 CGGTGGTTCAGGTCTTCAGG 60.321 60.000 0.00 0.00 0.00 3.86
370 377 0.320771 CCGGTGGTTCAGGTCTTCAG 60.321 60.000 0.00 0.00 0.00 3.02
371 378 1.052124 ACCGGTGGTTCAGGTCTTCA 61.052 55.000 6.12 0.00 40.44 3.02
372 379 1.752833 ACCGGTGGTTCAGGTCTTC 59.247 57.895 6.12 0.00 40.44 2.87
373 380 3.981313 ACCGGTGGTTCAGGTCTT 58.019 55.556 6.12 0.00 40.44 3.01
376 383 3.148084 CTGACCGGTGGTTCAGGT 58.852 61.111 14.63 0.00 46.68 4.00
393 400 2.823829 GATCAATGGACACGCCCGC 61.824 63.158 0.00 0.00 34.97 6.13
394 401 2.180204 GGATCAATGGACACGCCCG 61.180 63.158 0.00 0.00 34.97 6.13
397 404 1.209128 CTACGGATCAATGGACACGC 58.791 55.000 0.00 0.00 0.00 5.34
435 462 2.858344 GCGTATATGCTCGAAAGTGTGT 59.142 45.455 9.78 0.00 0.00 3.72
443 470 1.679153 TCCAAGTGCGTATATGCTCGA 59.321 47.619 17.56 5.02 35.36 4.04
455 483 3.438781 TCAAACATATTCCGTCCAAGTGC 59.561 43.478 0.00 0.00 0.00 4.40
459 487 3.666274 ACGTCAAACATATTCCGTCCAA 58.334 40.909 0.00 0.00 0.00 3.53
461 489 3.434299 ACAACGTCAAACATATTCCGTCC 59.566 43.478 0.00 0.00 0.00 4.79
465 493 4.201685 CGAGGACAACGTCAAACATATTCC 60.202 45.833 0.00 0.00 33.68 3.01
478 506 0.318699 TCTGCAAGACGAGGACAACG 60.319 55.000 0.00 0.00 38.67 4.10
510 538 2.512515 GCAGGACCAGTCATCCGC 60.513 66.667 0.00 0.00 41.52 5.54
512 540 1.028868 GCTTGCAGGACCAGTCATCC 61.029 60.000 0.00 0.00 36.38 3.51
517 545 1.303888 CATGGCTTGCAGGACCAGT 60.304 57.895 15.09 4.24 36.78 4.00
571 599 5.465390 GCAGTATTTGTGTGTCTTACAGTGA 59.535 40.000 0.00 0.00 40.69 3.41
577 605 6.685527 TTTGTGCAGTATTTGTGTGTCTTA 57.314 33.333 0.00 0.00 0.00 2.10
581 609 7.038154 ACTATTTTGTGCAGTATTTGTGTGT 57.962 32.000 0.00 0.00 0.00 3.72
666 721 0.329596 GATGTTGAGGCCAGGGACTT 59.670 55.000 5.01 0.00 34.60 3.01
692 747 1.336440 CGTCCATGTCAACAAGCCAAA 59.664 47.619 0.00 0.00 0.00 3.28
728 819 1.280066 GCAATGCACCATTTAAGGCG 58.720 50.000 0.00 0.00 31.05 5.52
745 836 2.434185 AAAGATTCGAGCGGCGCA 60.434 55.556 35.02 14.17 40.61 6.09
750 841 0.802222 TCCGCTGAAAGATTCGAGCG 60.802 55.000 20.03 20.03 46.65 5.03
804 895 3.883180 GGCGTGTGGCGTGTTGTT 61.883 61.111 0.00 0.00 44.92 2.83
893 984 2.809861 AAGATCGCCACAGCCCACAG 62.810 60.000 0.00 0.00 34.57 3.66
894 985 2.894257 AAGATCGCCACAGCCCACA 61.894 57.895 0.00 0.00 34.57 4.17
895 986 2.045926 AAGATCGCCACAGCCCAC 60.046 61.111 0.00 0.00 34.57 4.61
896 987 2.046023 CAAGATCGCCACAGCCCA 60.046 61.111 0.00 0.00 34.57 5.36
897 988 1.244019 AAACAAGATCGCCACAGCCC 61.244 55.000 0.00 0.00 34.57 5.19
975 1066 4.097361 GGGAAGGGGAGTGGCGTC 62.097 72.222 0.00 0.00 0.00 5.19
976 1067 4.658786 AGGGAAGGGGAGTGGCGT 62.659 66.667 0.00 0.00 0.00 5.68
999 1090 3.214123 CCCTCCGACGACGCCATA 61.214 66.667 0.64 0.00 38.29 2.74
1008 1099 3.507009 CGACGAGGTCCCTCCGAC 61.507 72.222 7.75 3.43 41.99 4.79
1048 1142 7.035612 TCTTTCTTCTTCTTGTTTTTGGCTTC 58.964 34.615 0.00 0.00 0.00 3.86
1050 1144 6.406288 CCTCTTTCTTCTTCTTGTTTTTGGCT 60.406 38.462 0.00 0.00 0.00 4.75
1057 1151 3.142174 CGGCCTCTTTCTTCTTCTTGTT 58.858 45.455 0.00 0.00 0.00 2.83
1058 1152 2.551071 CCGGCCTCTTTCTTCTTCTTGT 60.551 50.000 0.00 0.00 0.00 3.16
1059 1153 2.079925 CCGGCCTCTTTCTTCTTCTTG 58.920 52.381 0.00 0.00 0.00 3.02
1093 1187 3.075641 GTGGTCGGGGAGGTCCTC 61.076 72.222 10.78 10.78 35.95 3.71
1238 1332 3.437795 CGACGTACGGGACCTGCT 61.438 66.667 21.06 0.00 38.46 4.24
1282 1376 3.471806 GGGGACGAAGAGGGGCTC 61.472 72.222 0.00 0.00 0.00 4.70
1284 1378 3.471806 GAGGGGACGAAGAGGGGC 61.472 72.222 0.00 0.00 0.00 5.80
1491 1585 0.189822 AGAGGATCCCCTGGTAGAGC 59.810 60.000 8.55 0.00 44.53 4.09
1624 1718 0.171903 GAGAACACACATGCCATGGC 59.828 55.000 30.54 30.54 42.35 4.40
1854 1951 2.954868 CGCGAGGTCCGTATGTGC 60.955 66.667 0.00 0.00 41.15 4.57
1965 2065 0.616964 TCTCCAGCAGCCACTCATCT 60.617 55.000 0.00 0.00 0.00 2.90
2059 2159 0.179200 CTGGTATTCGCCGCAACAAC 60.179 55.000 0.00 0.00 0.00 3.32
2107 2207 2.094417 GCTCAACAGAGAATAACCACGC 59.906 50.000 0.00 0.00 0.00 5.34
2115 2215 2.611473 CGTGTCCAGCTCAACAGAGAAT 60.611 50.000 0.00 0.00 0.00 2.40
2218 2318 1.129917 CTCTCCCTGCCATGATCAGT 58.870 55.000 0.09 0.00 0.00 3.41
2245 2345 4.159244 TGACAATCAGGCATCATCATCA 57.841 40.909 0.00 0.00 0.00 3.07
2246 2346 4.082733 CCATGACAATCAGGCATCATCATC 60.083 45.833 0.00 0.00 44.97 2.92
2247 2347 3.826729 CCATGACAATCAGGCATCATCAT 59.173 43.478 0.00 0.00 44.97 2.45
2284 2384 4.081406 CCTCTCTGCTAGTCTGCTATGAT 58.919 47.826 0.00 0.00 0.00 2.45
2285 2385 3.137360 TCCTCTCTGCTAGTCTGCTATGA 59.863 47.826 0.00 0.00 0.00 2.15
2286 2386 3.485394 TCCTCTCTGCTAGTCTGCTATG 58.515 50.000 0.00 0.00 0.00 2.23
2287 2387 3.498481 CCTCCTCTCTGCTAGTCTGCTAT 60.498 52.174 0.00 0.00 0.00 2.97
2288 2388 2.158682 CCTCCTCTCTGCTAGTCTGCTA 60.159 54.545 0.00 0.00 0.00 3.49
2290 2390 1.032014 CCTCCTCTCTGCTAGTCTGC 58.968 60.000 0.00 0.00 0.00 4.26
2291 2391 2.023673 CACCTCCTCTCTGCTAGTCTG 58.976 57.143 0.00 0.00 0.00 3.51
2292 2392 1.919654 TCACCTCCTCTCTGCTAGTCT 59.080 52.381 0.00 0.00 0.00 3.24
2293 2393 2.428544 TCACCTCCTCTCTGCTAGTC 57.571 55.000 0.00 0.00 0.00 2.59
2294 2394 2.243478 TCATCACCTCCTCTCTGCTAGT 59.757 50.000 0.00 0.00 0.00 2.57
2295 2395 2.622942 GTCATCACCTCCTCTCTGCTAG 59.377 54.545 0.00 0.00 0.00 3.42
2406 2506 1.676006 AGAGTGAAGCAAAAACACGGG 59.324 47.619 0.00 0.00 39.19 5.28
2441 2670 4.173256 GTTTCAGCCCAATAACAAATCGG 58.827 43.478 0.00 0.00 0.00 4.18
2448 2677 2.939460 ATGCGTTTCAGCCCAATAAC 57.061 45.000 0.00 0.00 36.02 1.89
2464 2693 1.522258 CAAACAGGCAACACGAAATGC 59.478 47.619 0.00 0.00 41.82 3.56
2473 2702 5.671742 AAAAATGCATACAAACAGGCAAC 57.328 34.783 0.00 0.00 40.02 4.17
2511 2777 8.881262 CCTGAATATACCCCTATAAACAGACTT 58.119 37.037 0.00 0.00 31.12 3.01
2512 2778 8.239478 TCCTGAATATACCCCTATAAACAGACT 58.761 37.037 0.00 0.00 31.12 3.24
2513 2779 8.431910 TCCTGAATATACCCCTATAAACAGAC 57.568 38.462 0.00 0.00 31.12 3.51
2514 2780 9.046846 CATCCTGAATATACCCCTATAAACAGA 57.953 37.037 0.00 0.00 31.12 3.41
2515 2781 8.826765 ACATCCTGAATATACCCCTATAAACAG 58.173 37.037 0.00 0.00 0.00 3.16
2516 2782 8.751215 ACATCCTGAATATACCCCTATAAACA 57.249 34.615 0.00 0.00 0.00 2.83
2637 2903 9.620660 CACAACTTGGGACTTTTTAATATGTAC 57.379 33.333 0.00 0.00 0.00 2.90
2641 2907 6.386654 CGCACAACTTGGGACTTTTTAATAT 58.613 36.000 0.00 0.00 40.70 1.28
2642 2908 5.278561 CCGCACAACTTGGGACTTTTTAATA 60.279 40.000 0.00 0.00 40.70 0.98
2643 2909 4.500716 CCGCACAACTTGGGACTTTTTAAT 60.501 41.667 0.00 0.00 40.70 1.40
2644 2910 3.181485 CCGCACAACTTGGGACTTTTTAA 60.181 43.478 0.00 0.00 40.70 1.52
2645 2911 2.359531 CCGCACAACTTGGGACTTTTTA 59.640 45.455 0.00 0.00 40.70 1.52
2646 2912 1.136110 CCGCACAACTTGGGACTTTTT 59.864 47.619 0.00 0.00 40.70 1.94
2647 2913 0.744281 CCGCACAACTTGGGACTTTT 59.256 50.000 0.00 0.00 40.70 2.27
2648 2914 0.106918 TCCGCACAACTTGGGACTTT 60.107 50.000 0.00 0.00 40.70 2.66
2649 2915 0.106918 TTCCGCACAACTTGGGACTT 60.107 50.000 0.00 0.00 40.70 3.01
2650 2916 0.535102 CTTCCGCACAACTTGGGACT 60.535 55.000 0.00 0.00 40.70 3.85
2651 2917 0.818040 ACTTCCGCACAACTTGGGAC 60.818 55.000 0.00 0.00 40.70 4.46
2652 2918 0.106918 AACTTCCGCACAACTTGGGA 60.107 50.000 0.00 0.00 40.70 4.37
2653 2919 0.744281 AAACTTCCGCACAACTTGGG 59.256 50.000 0.00 0.00 37.91 4.12
2654 2920 2.577449 AAAACTTCCGCACAACTTGG 57.423 45.000 0.00 0.00 0.00 3.61
2678 2944 9.566432 AGAAGATAGAAGAATGAAACAAACACT 57.434 29.630 0.00 0.00 0.00 3.55
2700 2966 8.762426 GCGTCATTAGTATTACCCTTTAAGAAG 58.238 37.037 0.00 0.00 0.00 2.85
2701 2967 8.480501 AGCGTCATTAGTATTACCCTTTAAGAA 58.519 33.333 0.00 0.00 0.00 2.52
2702 2968 8.015185 AGCGTCATTAGTATTACCCTTTAAGA 57.985 34.615 0.00 0.00 0.00 2.10
2703 2969 9.754382 TTAGCGTCATTAGTATTACCCTTTAAG 57.246 33.333 0.00 0.00 0.00 1.85
2706 2972 9.269453 GAATTAGCGTCATTAGTATTACCCTTT 57.731 33.333 0.00 0.00 0.00 3.11
2707 2973 8.426489 TGAATTAGCGTCATTAGTATTACCCTT 58.574 33.333 0.00 0.00 0.00 3.95
2708 2974 7.959175 TGAATTAGCGTCATTAGTATTACCCT 58.041 34.615 0.00 0.00 0.00 4.34
2709 2975 8.773404 ATGAATTAGCGTCATTAGTATTACCC 57.227 34.615 0.00 0.00 31.54 3.69
2714 2980 9.640963 GGTAGAATGAATTAGCGTCATTAGTAT 57.359 33.333 7.61 0.65 43.96 2.12
2715 2981 8.857098 AGGTAGAATGAATTAGCGTCATTAGTA 58.143 33.333 7.61 2.47 43.96 1.82
2716 2982 7.727181 AGGTAGAATGAATTAGCGTCATTAGT 58.273 34.615 7.61 3.16 43.96 2.24
2717 2983 8.085296 AGAGGTAGAATGAATTAGCGTCATTAG 58.915 37.037 7.61 0.00 43.96 1.73
2718 2984 7.952671 AGAGGTAGAATGAATTAGCGTCATTA 58.047 34.615 7.61 0.00 43.96 1.90
2719 2985 6.821388 AGAGGTAGAATGAATTAGCGTCATT 58.179 36.000 7.42 7.42 46.03 2.57
2720 2986 6.412362 AGAGGTAGAATGAATTAGCGTCAT 57.588 37.500 0.00 0.00 37.31 3.06
2721 2987 5.854010 AGAGGTAGAATGAATTAGCGTCA 57.146 39.130 0.00 0.00 0.00 4.35
2722 2988 6.273825 TGAAGAGGTAGAATGAATTAGCGTC 58.726 40.000 0.00 0.00 0.00 5.19
2723 2989 6.222038 TGAAGAGGTAGAATGAATTAGCGT 57.778 37.500 0.00 0.00 0.00 5.07
2724 2990 7.721286 AATGAAGAGGTAGAATGAATTAGCG 57.279 36.000 0.00 0.00 0.00 4.26
2725 2991 9.943163 GAAAATGAAGAGGTAGAATGAATTAGC 57.057 33.333 0.00 0.00 0.00 3.09
2734 3000 9.847224 AACACTTAAGAAAATGAAGAGGTAGAA 57.153 29.630 10.09 0.00 0.00 2.10
2735 3001 9.273016 CAACACTTAAGAAAATGAAGAGGTAGA 57.727 33.333 10.09 0.00 0.00 2.59
2736 3002 8.507249 CCAACACTTAAGAAAATGAAGAGGTAG 58.493 37.037 10.09 0.00 0.00 3.18
2737 3003 7.996644 ACCAACACTTAAGAAAATGAAGAGGTA 59.003 33.333 10.09 0.00 0.00 3.08
2738 3004 6.833933 ACCAACACTTAAGAAAATGAAGAGGT 59.166 34.615 10.09 3.20 0.00 3.85
2739 3005 7.277174 ACCAACACTTAAGAAAATGAAGAGG 57.723 36.000 10.09 2.65 0.00 3.69
2741 3007 9.567776 TGATACCAACACTTAAGAAAATGAAGA 57.432 29.630 10.09 0.00 0.00 2.87
2754 3020 8.360390 GGAAGAAAGAAAATGATACCAACACTT 58.640 33.333 0.00 0.00 0.00 3.16
2755 3021 7.505585 TGGAAGAAAGAAAATGATACCAACACT 59.494 33.333 0.00 0.00 0.00 3.55
2756 3022 7.657336 TGGAAGAAAGAAAATGATACCAACAC 58.343 34.615 0.00 0.00 0.00 3.32
2757 3023 7.831691 TGGAAGAAAGAAAATGATACCAACA 57.168 32.000 0.00 0.00 0.00 3.33
2760 3026 9.189156 CCTTATGGAAGAAAGAAAATGATACCA 57.811 33.333 0.00 0.00 34.25 3.25
2761 3027 8.138074 GCCTTATGGAAGAAAGAAAATGATACC 58.862 37.037 0.00 0.00 34.25 2.73
2762 3028 8.138074 GGCCTTATGGAAGAAAGAAAATGATAC 58.862 37.037 0.00 0.00 34.25 2.24
2763 3029 7.838696 TGGCCTTATGGAAGAAAGAAAATGATA 59.161 33.333 3.32 0.00 34.25 2.15
2764 3030 6.669154 TGGCCTTATGGAAGAAAGAAAATGAT 59.331 34.615 3.32 0.00 34.25 2.45
2765 3031 6.015918 TGGCCTTATGGAAGAAAGAAAATGA 58.984 36.000 3.32 0.00 34.25 2.57
2766 3032 6.284891 TGGCCTTATGGAAGAAAGAAAATG 57.715 37.500 3.32 0.00 34.25 2.32
2767 3033 8.608185 TTATGGCCTTATGGAAGAAAGAAAAT 57.392 30.769 3.32 0.00 34.25 1.82
2768 3034 7.124147 CCTTATGGCCTTATGGAAGAAAGAAAA 59.876 37.037 20.41 0.00 34.25 2.29
2769 3035 6.607198 CCTTATGGCCTTATGGAAGAAAGAAA 59.393 38.462 20.41 0.00 34.25 2.52
2770 3036 6.129179 CCTTATGGCCTTATGGAAGAAAGAA 58.871 40.000 20.41 0.00 34.25 2.52
2771 3037 5.399038 CCCTTATGGCCTTATGGAAGAAAGA 60.399 44.000 24.60 0.00 34.25 2.52
2772 3038 4.829492 CCCTTATGGCCTTATGGAAGAAAG 59.171 45.833 24.60 8.73 34.25 2.62
2773 3039 4.231890 ACCCTTATGGCCTTATGGAAGAAA 59.768 41.667 24.60 0.21 37.83 2.52
2774 3040 3.791545 ACCCTTATGGCCTTATGGAAGAA 59.208 43.478 24.60 0.00 37.83 2.52
2775 3041 3.403322 ACCCTTATGGCCTTATGGAAGA 58.597 45.455 24.60 0.00 37.83 2.87
2776 3042 3.884037 ACCCTTATGGCCTTATGGAAG 57.116 47.619 24.60 14.88 37.83 3.46
2777 3043 5.941146 ATTACCCTTATGGCCTTATGGAA 57.059 39.130 24.60 15.53 37.83 3.53
2778 3044 6.738086 TGATATTACCCTTATGGCCTTATGGA 59.262 38.462 24.60 10.94 37.83 3.41
2779 3045 6.969043 TGATATTACCCTTATGGCCTTATGG 58.031 40.000 18.86 18.86 37.83 2.74
2780 3046 8.906867 CATTGATATTACCCTTATGGCCTTATG 58.093 37.037 3.32 4.34 37.83 1.90
2781 3047 7.561356 GCATTGATATTACCCTTATGGCCTTAT 59.439 37.037 3.32 0.00 37.83 1.73
2782 3048 6.889722 GCATTGATATTACCCTTATGGCCTTA 59.110 38.462 3.32 0.00 37.83 2.69
2783 3049 5.716703 GCATTGATATTACCCTTATGGCCTT 59.283 40.000 3.32 0.00 37.83 4.35
2784 3050 5.264395 GCATTGATATTACCCTTATGGCCT 58.736 41.667 3.32 0.00 37.83 5.19
2785 3051 4.402474 GGCATTGATATTACCCTTATGGCC 59.598 45.833 0.00 0.00 37.83 5.36
2786 3052 5.016173 TGGCATTGATATTACCCTTATGGC 58.984 41.667 0.00 0.00 37.83 4.40
2787 3053 6.248433 AGTGGCATTGATATTACCCTTATGG 58.752 40.000 0.00 0.00 41.37 2.74
2788 3054 8.862325 TTAGTGGCATTGATATTACCCTTATG 57.138 34.615 0.00 0.00 0.00 1.90
2790 3056 9.875708 AAATTAGTGGCATTGATATTACCCTTA 57.124 29.630 0.00 0.00 0.00 2.69
2791 3057 8.782137 AAATTAGTGGCATTGATATTACCCTT 57.218 30.769 0.00 0.00 0.00 3.95
2845 3111 9.003658 GCAAGAATACATATAATAGTGGCACTT 57.996 33.333 27.24 11.55 0.00 3.16
2846 3112 8.156820 TGCAAGAATACATATAATAGTGGCACT 58.843 33.333 25.34 25.34 0.00 4.40
2847 3113 8.322906 TGCAAGAATACATATAATAGTGGCAC 57.677 34.615 10.29 10.29 0.00 5.01
2885 3151 9.526713 TTTGCACATGATTTACGCATAAATTAT 57.473 25.926 0.00 0.00 40.42 1.28
2886 3152 8.917415 TTTGCACATGATTTACGCATAAATTA 57.083 26.923 0.00 0.00 40.42 1.40
2887 3153 7.824704 TTTGCACATGATTTACGCATAAATT 57.175 28.000 0.00 0.00 40.42 1.82
2888 3154 7.824704 TTTTGCACATGATTTACGCATAAAT 57.175 28.000 0.00 0.00 42.55 1.40
2889 3155 7.824704 ATTTTGCACATGATTTACGCATAAA 57.175 28.000 0.00 0.00 34.78 1.40
2890 3156 7.824704 AATTTTGCACATGATTTACGCATAA 57.175 28.000 0.00 0.73 31.67 1.90
2891 3157 7.824704 AAATTTTGCACATGATTTACGCATA 57.175 28.000 0.00 0.00 31.67 3.14
2892 3158 6.724694 AAATTTTGCACATGATTTACGCAT 57.275 29.167 0.00 0.00 31.67 4.73
2893 3159 6.536731 AAAATTTTGCACATGATTTACGCA 57.463 29.167 1.75 0.00 0.00 5.24
2894 3160 7.068341 TGAAAAATTTTGCACATGATTTACGC 58.932 30.769 7.56 0.00 0.00 4.42
2895 3161 9.596677 AATGAAAAATTTTGCACATGATTTACG 57.403 25.926 13.96 0.00 0.00 3.18
2901 3167 9.395707 GCAAATAATGAAAAATTTTGCACATGA 57.604 25.926 13.96 9.03 46.96 3.07
2955 3221 6.661805 TGGCTTTGGTATTACCCTTTAAGAAG 59.338 38.462 10.37 4.81 37.50 2.85
2956 3222 6.434965 GTGGCTTTGGTATTACCCTTTAAGAA 59.565 38.462 10.37 0.00 37.50 2.52
2957 3223 5.947566 GTGGCTTTGGTATTACCCTTTAAGA 59.052 40.000 10.37 0.00 37.50 2.10
2958 3224 5.949952 AGTGGCTTTGGTATTACCCTTTAAG 59.050 40.000 10.37 9.27 37.50 1.85
2959 3225 5.894653 AGTGGCTTTGGTATTACCCTTTAA 58.105 37.500 10.37 0.00 37.50 1.52
2960 3226 5.523883 AGTGGCTTTGGTATTACCCTTTA 57.476 39.130 10.37 0.00 37.50 1.85
2961 3227 4.397919 AGTGGCTTTGGTATTACCCTTT 57.602 40.909 10.37 0.00 37.50 3.11
2962 3228 5.523883 TTAGTGGCTTTGGTATTACCCTT 57.476 39.130 10.37 0.00 37.50 3.95
2963 3229 5.727243 ATTAGTGGCTTTGGTATTACCCT 57.273 39.130 10.37 1.22 37.50 4.34
2964 3230 5.889289 TGAATTAGTGGCTTTGGTATTACCC 59.111 40.000 10.37 0.00 37.50 3.69
2965 3231 7.582667 ATGAATTAGTGGCTTTGGTATTACC 57.417 36.000 5.87 5.87 39.22 2.85
2966 3232 8.903820 AGAATGAATTAGTGGCTTTGGTATTAC 58.096 33.333 0.00 0.00 0.00 1.89
2967 3233 9.474313 AAGAATGAATTAGTGGCTTTGGTATTA 57.526 29.630 0.00 0.00 0.00 0.98
2968 3234 7.961326 AGAATGAATTAGTGGCTTTGGTATT 57.039 32.000 0.00 0.00 0.00 1.89
2969 3235 7.068716 GGAAGAATGAATTAGTGGCTTTGGTAT 59.931 37.037 0.00 0.00 0.00 2.73
2970 3236 6.377146 GGAAGAATGAATTAGTGGCTTTGGTA 59.623 38.462 0.00 0.00 0.00 3.25
2971 3237 5.185828 GGAAGAATGAATTAGTGGCTTTGGT 59.814 40.000 0.00 0.00 0.00 3.67
2972 3238 5.420104 AGGAAGAATGAATTAGTGGCTTTGG 59.580 40.000 0.00 0.00 0.00 3.28
2973 3239 6.521151 AGGAAGAATGAATTAGTGGCTTTG 57.479 37.500 0.00 0.00 0.00 2.77
2974 3240 8.109634 TCTAAGGAAGAATGAATTAGTGGCTTT 58.890 33.333 0.00 0.00 0.00 3.51
2975 3241 7.633789 TCTAAGGAAGAATGAATTAGTGGCTT 58.366 34.615 0.00 0.00 0.00 4.35
2976 3242 7.200434 TCTAAGGAAGAATGAATTAGTGGCT 57.800 36.000 0.00 0.00 0.00 4.75
2977 3243 7.865706 TTCTAAGGAAGAATGAATTAGTGGC 57.134 36.000 0.00 0.00 39.36 5.01
3110 3376 9.340695 CGTCTGATATTTACAATGAAGCAAAAA 57.659 29.630 0.00 0.00 0.00 1.94
3111 3377 7.967854 CCGTCTGATATTTACAATGAAGCAAAA 59.032 33.333 0.00 0.00 0.00 2.44
3112 3378 7.335673 TCCGTCTGATATTTACAATGAAGCAAA 59.664 33.333 0.00 0.00 0.00 3.68
3113 3379 6.821160 TCCGTCTGATATTTACAATGAAGCAA 59.179 34.615 0.00 0.00 0.00 3.91
3114 3380 6.345298 TCCGTCTGATATTTACAATGAAGCA 58.655 36.000 0.00 0.00 0.00 3.91
3115 3381 6.844696 TCCGTCTGATATTTACAATGAAGC 57.155 37.500 0.00 0.00 0.00 3.86
3116 3382 8.122952 GGTTTCCGTCTGATATTTACAATGAAG 58.877 37.037 0.00 0.00 0.00 3.02
3117 3383 7.608376 TGGTTTCCGTCTGATATTTACAATGAA 59.392 33.333 0.00 0.00 0.00 2.57
3118 3384 7.106890 TGGTTTCCGTCTGATATTTACAATGA 58.893 34.615 0.00 0.00 0.00 2.57
3119 3385 7.315247 TGGTTTCCGTCTGATATTTACAATG 57.685 36.000 0.00 0.00 0.00 2.82
3120 3386 7.931578 TTGGTTTCCGTCTGATATTTACAAT 57.068 32.000 0.00 0.00 0.00 2.71
3121 3387 7.931578 ATTGGTTTCCGTCTGATATTTACAA 57.068 32.000 0.00 0.00 0.00 2.41
3122 3388 7.201574 CGAATTGGTTTCCGTCTGATATTTACA 60.202 37.037 0.00 0.00 0.00 2.41
3123 3389 7.010738 TCGAATTGGTTTCCGTCTGATATTTAC 59.989 37.037 0.00 0.00 0.00 2.01
3124 3390 7.042950 TCGAATTGGTTTCCGTCTGATATTTA 58.957 34.615 0.00 0.00 0.00 1.40
3125 3391 5.878116 TCGAATTGGTTTCCGTCTGATATTT 59.122 36.000 0.00 0.00 0.00 1.40
3126 3392 5.424757 TCGAATTGGTTTCCGTCTGATATT 58.575 37.500 0.00 0.00 0.00 1.28
3127 3393 5.018539 TCGAATTGGTTTCCGTCTGATAT 57.981 39.130 0.00 0.00 0.00 1.63
3128 3394 4.459390 TCGAATTGGTTTCCGTCTGATA 57.541 40.909 0.00 0.00 0.00 2.15
3129 3395 3.328382 TCGAATTGGTTTCCGTCTGAT 57.672 42.857 0.00 0.00 0.00 2.90
3130 3396 2.823924 TCGAATTGGTTTCCGTCTGA 57.176 45.000 0.00 0.00 0.00 3.27
3131 3397 2.095853 CCATCGAATTGGTTTCCGTCTG 59.904 50.000 0.00 0.00 31.74 3.51
3132 3398 2.027561 TCCATCGAATTGGTTTCCGTCT 60.028 45.455 5.00 0.00 38.01 4.18
3133 3399 2.352388 TCCATCGAATTGGTTTCCGTC 58.648 47.619 5.00 0.00 38.01 4.79
3134 3400 2.483014 TCCATCGAATTGGTTTCCGT 57.517 45.000 5.00 0.00 38.01 4.69
3135 3401 3.498082 GTTTCCATCGAATTGGTTTCCG 58.502 45.455 5.00 0.00 38.01 4.30
3136 3402 3.257127 TGGTTTCCATCGAATTGGTTTCC 59.743 43.478 5.00 6.59 38.01 3.13
3137 3403 4.022329 ACTGGTTTCCATCGAATTGGTTTC 60.022 41.667 5.00 0.00 38.01 2.78
3138 3404 3.895041 ACTGGTTTCCATCGAATTGGTTT 59.105 39.130 5.00 0.00 38.01 3.27
3139 3405 3.255642 CACTGGTTTCCATCGAATTGGTT 59.744 43.478 5.00 0.00 38.01 3.67
3140 3406 2.819608 CACTGGTTTCCATCGAATTGGT 59.180 45.455 5.00 0.00 38.01 3.67
3141 3407 3.081061 TCACTGGTTTCCATCGAATTGG 58.919 45.455 0.00 0.00 38.18 3.16
3142 3408 4.764679 TTCACTGGTTTCCATCGAATTG 57.235 40.909 0.00 0.00 30.82 2.32
3143 3409 5.782893 TTTTCACTGGTTTCCATCGAATT 57.217 34.783 0.00 0.00 30.82 2.17
3144 3410 5.508994 GGTTTTTCACTGGTTTCCATCGAAT 60.509 40.000 0.00 0.00 30.82 3.34
3145 3411 4.202070 GGTTTTTCACTGGTTTCCATCGAA 60.202 41.667 0.00 0.00 30.82 3.71
3146 3412 3.316868 GGTTTTTCACTGGTTTCCATCGA 59.683 43.478 0.00 0.00 30.82 3.59
3147 3413 3.067461 TGGTTTTTCACTGGTTTCCATCG 59.933 43.478 0.00 0.00 30.82 3.84
3148 3414 4.340950 TCTGGTTTTTCACTGGTTTCCATC 59.659 41.667 0.00 0.00 30.82 3.51
3149 3415 4.285863 TCTGGTTTTTCACTGGTTTCCAT 58.714 39.130 0.00 0.00 30.82 3.41
3150 3416 3.702792 TCTGGTTTTTCACTGGTTTCCA 58.297 40.909 0.00 0.00 0.00 3.53
3151 3417 4.401202 TCTTCTGGTTTTTCACTGGTTTCC 59.599 41.667 0.00 0.00 0.00 3.13
3152 3418 5.576447 TCTTCTGGTTTTTCACTGGTTTC 57.424 39.130 0.00 0.00 0.00 2.78
3153 3419 5.993748 TTCTTCTGGTTTTTCACTGGTTT 57.006 34.783 0.00 0.00 0.00 3.27
3154 3420 5.993748 TTTCTTCTGGTTTTTCACTGGTT 57.006 34.783 0.00 0.00 0.00 3.67
3155 3421 5.714806 TCTTTTCTTCTGGTTTTTCACTGGT 59.285 36.000 0.00 0.00 0.00 4.00
3156 3422 6.207691 TCTTTTCTTCTGGTTTTTCACTGG 57.792 37.500 0.00 0.00 0.00 4.00
3157 3423 9.971922 AATATCTTTTCTTCTGGTTTTTCACTG 57.028 29.630 0.00 0.00 0.00 3.66
3207 3473 9.927081 ATCATCCTCTTAACATCCTGTATTTTT 57.073 29.630 0.00 0.00 0.00 1.94
3208 3474 9.347240 CATCATCCTCTTAACATCCTGTATTTT 57.653 33.333 0.00 0.00 0.00 1.82
3209 3475 8.497745 ACATCATCCTCTTAACATCCTGTATTT 58.502 33.333 0.00 0.00 0.00 1.40
3210 3476 8.038862 ACATCATCCTCTTAACATCCTGTATT 57.961 34.615 0.00 0.00 0.00 1.89
3211 3477 7.623999 ACATCATCCTCTTAACATCCTGTAT 57.376 36.000 0.00 0.00 0.00 2.29
3212 3478 7.437713 AACATCATCCTCTTAACATCCTGTA 57.562 36.000 0.00 0.00 0.00 2.74
3213 3479 5.965033 ACATCATCCTCTTAACATCCTGT 57.035 39.130 0.00 0.00 0.00 4.00
3214 3480 7.636150 AAAACATCATCCTCTTAACATCCTG 57.364 36.000 0.00 0.00 0.00 3.86
3215 3481 9.927081 AATAAAACATCATCCTCTTAACATCCT 57.073 29.630 0.00 0.00 0.00 3.24
3216 3482 9.956720 CAATAAAACATCATCCTCTTAACATCC 57.043 33.333 0.00 0.00 0.00 3.51
3217 3483 9.455847 GCAATAAAACATCATCCTCTTAACATC 57.544 33.333 0.00 0.00 0.00 3.06
3218 3484 8.416329 GGCAATAAAACATCATCCTCTTAACAT 58.584 33.333 0.00 0.00 0.00 2.71
3219 3485 7.771183 GGCAATAAAACATCATCCTCTTAACA 58.229 34.615 0.00 0.00 0.00 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.