Multiple sequence alignment - TraesCS1A01G257100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G257100 chr1A 100.000 2766 0 0 1 2766 449513442 449510677 0.000000e+00 5108.0
1 TraesCS1A01G257100 chr1A 84.000 150 21 2 381 530 354418095 354418241 1.030000e-29 141.0
2 TraesCS1A01G257100 chr1A 81.690 142 20 5 1593 1731 27387766 27387628 2.250000e-21 113.0
3 TraesCS1A01G257100 chr6B 93.300 2194 80 25 1 2181 142707517 142705378 0.000000e+00 3175.0
4 TraesCS1A01G257100 chr6B 80.326 981 136 29 998 1956 9812766 9811821 0.000000e+00 689.0
5 TraesCS1A01G257100 chr6B 84.667 150 20 2 381 530 132812513 132812659 2.220000e-31 147.0
6 TraesCS1A01G257100 chr6B 84.667 150 20 2 381 530 132822137 132822283 2.220000e-31 147.0
7 TraesCS1A01G257100 chr6B 81.690 142 20 5 1593 1731 2165097 2165235 2.250000e-21 113.0
8 TraesCS1A01G257100 chr5B 92.984 2195 79 25 1 2182 703111681 703109549 0.000000e+00 3131.0
9 TraesCS1A01G257100 chr4A 91.103 843 63 4 1349 2181 145877630 145878470 0.000000e+00 1131.0
10 TraesCS1A01G257100 chr4A 72.797 522 113 24 1220 1730 649161392 649160889 1.720000e-32 150.0
11 TraesCS1A01G257100 chr1D 92.334 587 39 3 2181 2766 349079543 349078962 0.000000e+00 830.0
12 TraesCS1A01G257100 chr7B 78.644 885 150 25 990 1853 162084411 162085277 4.030000e-153 551.0
13 TraesCS1A01G257100 chr4B 78.530 517 81 20 1220 1731 5933260 5932769 2.070000e-81 313.0
14 TraesCS1A01G257100 chr7D 83.978 181 27 2 170 349 267043260 267043081 3.660000e-39 172.0
15 TraesCS1A01G257100 chr7D 83.673 147 22 2 384 530 267042507 267042363 1.340000e-28 137.0
16 TraesCS1A01G257100 chr7D 82.394 142 19 5 1593 1731 359514169 359514031 4.840000e-23 119.0
17 TraesCS1A01G257100 chrUn 85.034 147 19 2 384 530 334025779 334025636 2.220000e-31 147.0
18 TraesCS1A01G257100 chr6A 84.667 150 20 2 381 530 564679100 564679246 2.220000e-31 147.0
19 TraesCS1A01G257100 chr3B 81.667 180 29 3 1009 1186 697618987 697619164 2.220000e-31 147.0
20 TraesCS1A01G257100 chr6D 78.704 216 38 6 139 349 319349266 319349478 1.340000e-28 137.0
21 TraesCS1A01G257100 chr5D 80.282 142 22 5 1593 1731 42308705 42308567 4.870000e-18 102.0
22 TraesCS1A01G257100 chr2A 94.231 52 3 0 2130 2181 761182483 761182432 2.280000e-11 80.5
23 TraesCS1A01G257100 chr5A 100.000 28 0 0 2147 2174 1191561 1191534 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G257100 chr1A 449510677 449513442 2765 True 5108 5108 100.000 1 2766 1 chr1A.!!$R2 2765
1 TraesCS1A01G257100 chr6B 142705378 142707517 2139 True 3175 3175 93.300 1 2181 1 chr6B.!!$R2 2180
2 TraesCS1A01G257100 chr6B 9811821 9812766 945 True 689 689 80.326 998 1956 1 chr6B.!!$R1 958
3 TraesCS1A01G257100 chr5B 703109549 703111681 2132 True 3131 3131 92.984 1 2182 1 chr5B.!!$R1 2181
4 TraesCS1A01G257100 chr4A 145877630 145878470 840 False 1131 1131 91.103 1349 2181 1 chr4A.!!$F1 832
5 TraesCS1A01G257100 chr1D 349078962 349079543 581 True 830 830 92.334 2181 2766 1 chr1D.!!$R1 585
6 TraesCS1A01G257100 chr7B 162084411 162085277 866 False 551 551 78.644 990 1853 1 chr7B.!!$F1 863

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
55 56 2.042686 TTGCAAAGATGGATAGCGCT 57.957 45.0 17.26 17.26 0.0 5.92 F
1492 1512 1.893544 TCGCCGACCCAACAATTTTA 58.106 45.0 0.00 0.00 0.0 1.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1744 1776 1.134946 CATTTTTCCCTCGCATGTCCC 59.865 52.381 0.00 0.0 0.00 4.46 R
2396 2439 0.037419 TGATCGCTGCTGCAACTGTA 60.037 50.000 16.29 0.0 39.64 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 2.042686 TTGCAAAGATGGATAGCGCT 57.957 45.000 17.26 17.26 0.00 5.92
97 98 2.420568 TATCCGGTCAGTCCCACGC 61.421 63.158 0.00 0.00 0.00 5.34
133 134 4.115516 CCCATCGTCAGTCACAATTAGAG 58.884 47.826 0.00 0.00 0.00 2.43
157 158 3.696051 CACCTTACATGCTTATGGTTGCT 59.304 43.478 0.00 0.00 29.16 3.91
278 279 4.732355 GCGAGTGAGATTCTGAGAGGTAAC 60.732 50.000 0.00 0.00 0.00 2.50
383 384 3.690460 AGAAAGACATCAATGGTCCACC 58.310 45.455 0.00 0.00 35.89 4.61
394 395 5.745227 TCAATGGTCCACCTTCTTTCTATC 58.255 41.667 0.00 0.00 36.82 2.08
425 426 8.712228 AACAGGAAGGTCTCAATTTTCTTATT 57.288 30.769 0.00 0.00 0.00 1.40
537 540 4.857509 AGAAGTGATCTTATCTACCCGC 57.142 45.455 0.00 0.00 33.39 6.13
538 541 4.215908 AGAAGTGATCTTATCTACCCGCA 58.784 43.478 0.00 0.00 33.39 5.69
539 542 4.649674 AGAAGTGATCTTATCTACCCGCAA 59.350 41.667 0.00 0.00 33.39 4.85
540 543 5.128827 AGAAGTGATCTTATCTACCCGCAAA 59.871 40.000 0.00 0.00 33.39 3.68
541 544 5.353394 AGTGATCTTATCTACCCGCAAAA 57.647 39.130 0.00 0.00 0.00 2.44
542 545 5.741011 AGTGATCTTATCTACCCGCAAAAA 58.259 37.500 0.00 0.00 0.00 1.94
582 585 8.797350 TTTATGAATTTCTCAGATTGCTCTCA 57.203 30.769 0.00 0.00 37.52 3.27
583 586 8.975663 TTATGAATTTCTCAGATTGCTCTCAT 57.024 30.769 0.00 0.00 37.52 2.90
665 668 4.133078 GCTTCATAGGTATCTTGCAGCTT 58.867 43.478 0.00 0.00 0.00 3.74
699 702 5.588246 TGAACACACTCACTGCTGAATTTAA 59.412 36.000 0.00 0.00 0.00 1.52
862 865 4.636249 CATCCTGGTAGGCATTTAGTCTC 58.364 47.826 0.00 0.00 34.61 3.36
914 917 3.082698 CAACATGTTGTCACACCCTTG 57.917 47.619 27.08 0.97 35.03 3.61
919 922 5.136828 ACATGTTGTCACACCCTTGAAATA 58.863 37.500 0.00 0.00 35.03 1.40
924 927 3.010420 GTCACACCCTTGAAATAGAGGC 58.990 50.000 0.00 0.00 0.00 4.70
1066 1071 4.593206 ACGAAGGGATTTGATAGGCAGATA 59.407 41.667 0.00 0.00 0.00 1.98
1179 1184 3.665745 AATGAGATTGTTTGGCGCTTT 57.334 38.095 7.64 0.00 0.00 3.51
1206 1211 7.011576 CCAGAGAGAATGAAGATTGATTCAGTG 59.988 40.741 7.37 0.00 42.20 3.66
1447 1466 5.033589 AGGTTTGCCATCAATCACAAAAA 57.966 34.783 0.00 0.00 34.10 1.94
1492 1512 1.893544 TCGCCGACCCAACAATTTTA 58.106 45.000 0.00 0.00 0.00 1.52
1494 1514 2.820787 TCGCCGACCCAACAATTTTATT 59.179 40.909 0.00 0.00 0.00 1.40
1624 1656 4.859629 AAAACTCTCCGCATAAATCGAC 57.140 40.909 0.00 0.00 0.00 4.20
1657 1689 8.084073 AGATTCAACATGAAATTCAAATGACGT 58.916 29.630 0.00 0.00 40.12 4.34
1658 1690 8.592105 ATTCAACATGAAATTCAAATGACGTT 57.408 26.923 0.00 0.00 40.12 3.99
1687 1719 8.561738 TTTTTCATAGGTACTCTTTGGCTAAG 57.438 34.615 2.06 2.06 41.75 2.18
1725 1757 3.882888 TCAGAAGATGAAACCACCAACAC 59.117 43.478 0.00 0.00 34.02 3.32
1737 1769 4.335416 ACCACCAACACAGAGATTATTGG 58.665 43.478 0.00 0.00 44.48 3.16
1744 1776 3.879295 ACACAGAGATTATTGGGCAATCG 59.121 43.478 0.00 0.00 37.45 3.34
1815 1847 8.615211 CAAGAATAATGCTGCACAAGAATACTA 58.385 33.333 3.57 0.00 0.00 1.82
1944 1985 8.836268 ACAAACTCACGTTATTACTATTTCCA 57.164 30.769 0.00 0.00 31.86 3.53
2010 2051 6.560003 TTGTGAAGTCTATGGGTGATATGT 57.440 37.500 0.00 0.00 0.00 2.29
2023 2064 5.163343 TGGGTGATATGTACTTTACAGAGCC 60.163 44.000 0.00 0.00 42.77 4.70
2030 2071 9.291664 GATATGTACTTTACAGAGCCGATTATC 57.708 37.037 0.00 0.00 42.77 1.75
2045 2086 8.366671 AGCCGATTATCTGTATTTTACTTCAC 57.633 34.615 0.00 0.00 0.00 3.18
2047 2088 9.472361 GCCGATTATCTGTATTTTACTTCACTA 57.528 33.333 0.00 0.00 0.00 2.74
2164 2207 2.560119 AAAATCCCGCAGCAACGCA 61.560 52.632 0.00 0.00 0.00 5.24
2191 2234 7.344134 GGGGTATCAACTAGTTCCATAAGTTT 58.656 38.462 4.77 0.00 31.21 2.66
2221 2264 3.140814 GCGGAGGGGGTGCAAATC 61.141 66.667 0.00 0.00 0.00 2.17
2240 2283 2.388735 TCTGCACGGTATCATCCTTCT 58.611 47.619 0.00 0.00 0.00 2.85
2243 2286 2.499693 TGCACGGTATCATCCTTCTGAA 59.500 45.455 0.00 0.00 0.00 3.02
2260 2303 6.127619 CCTTCTGAAGGTGAGTGAAAACTTTT 60.128 38.462 25.13 0.00 43.95 2.27
2286 2329 1.843368 CATCCCACAATGGAGCTTGT 58.157 50.000 0.00 0.00 40.96 3.16
2306 2349 2.584418 CGAGGGCATGTCGAGCAG 60.584 66.667 0.00 0.00 39.92 4.24
2313 2356 1.265568 GCATGTCGAGCAGCAAATTG 58.734 50.000 0.00 0.00 0.00 2.32
2348 2391 0.977395 GTAGTGCCAGACCTCCTTGT 59.023 55.000 0.00 0.00 0.00 3.16
2349 2392 1.066787 GTAGTGCCAGACCTCCTTGTC 60.067 57.143 0.00 0.00 35.43 3.18
2415 2458 0.037419 TACAGTTGCAGCAGCGATCA 60.037 50.000 2.55 0.00 46.23 2.92
2471 2514 5.221028 CGGCAGTCCATAATCTATTTTGCAA 60.221 40.000 0.00 0.00 0.00 4.08
2483 2526 2.949451 TTTTGCAACAACGTCCACAT 57.051 40.000 0.00 0.00 0.00 3.21
2504 2547 7.540055 CCACATGAAGAATTTCACTTTAGCTTC 59.460 37.037 0.00 0.00 45.54 3.86
2507 2550 4.686839 AGAATTTCACTTTAGCTTCCGC 57.313 40.909 0.00 0.00 0.00 5.54
2509 2552 2.561478 TTTCACTTTAGCTTCCGCCT 57.439 45.000 0.00 0.00 36.60 5.52
2510 2553 2.561478 TTCACTTTAGCTTCCGCCTT 57.439 45.000 0.00 0.00 36.60 4.35
2511 2554 3.688694 TTCACTTTAGCTTCCGCCTTA 57.311 42.857 0.00 0.00 36.60 2.69
2536 2580 3.866703 TCCAAACACTATCCAACACCA 57.133 42.857 0.00 0.00 0.00 4.17
2537 2581 4.171878 TCCAAACACTATCCAACACCAA 57.828 40.909 0.00 0.00 0.00 3.67
2565 2609 5.488919 AGGGATCCTTGTCTTGAACTGAATA 59.511 40.000 12.58 0.00 0.00 1.75
2603 2647 4.335594 GGCTGAGTAGTTGTTGTTTGAAGT 59.664 41.667 0.00 0.00 0.00 3.01
2604 2648 5.526111 GGCTGAGTAGTTGTTGTTTGAAGTA 59.474 40.000 0.00 0.00 0.00 2.24
2605 2649 6.037830 GGCTGAGTAGTTGTTGTTTGAAGTAA 59.962 38.462 0.00 0.00 0.00 2.24
2606 2650 7.126398 GCTGAGTAGTTGTTGTTTGAAGTAAG 58.874 38.462 0.00 0.00 0.00 2.34
2616 2660 6.657541 TGTTGTTTGAAGTAAGAGTCCAAACT 59.342 34.615 16.34 3.73 43.89 2.66
2624 2668 8.871125 TGAAGTAAGAGTCCAAACTAGAGAATT 58.129 33.333 0.00 0.00 35.28 2.17
2632 2676 6.903534 AGTCCAAACTAGAGAATTATCCTCCA 59.096 38.462 0.00 0.00 32.59 3.86
2647 2691 3.511477 TCCTCCATGCTAGGAAGGATAC 58.489 50.000 8.77 0.00 40.23 2.24
2663 2707 3.890147 AGGATACCAGATTGTACCGACTC 59.110 47.826 0.00 0.00 37.17 3.36
2670 2714 3.927142 CAGATTGTACCGACTCCACTTTC 59.073 47.826 0.00 0.00 0.00 2.62
2694 2738 5.405571 CGTCCATAAACATAGGAAATCCTCG 59.594 44.000 4.96 1.33 44.77 4.63
2696 2740 6.647067 GTCCATAAACATAGGAAATCCTCGAG 59.353 42.308 5.13 5.13 44.77 4.04
2716 2760 3.461061 AGTGTAGCAACATCATCCATCG 58.539 45.455 0.00 0.00 38.08 3.84
2740 2784 6.073548 CGTATTTAAACCTCTCATCCATCTGC 60.074 42.308 0.00 0.00 0.00 4.26
2741 2785 2.725221 AAACCTCTCATCCATCTGCC 57.275 50.000 0.00 0.00 0.00 4.85
2750 2794 0.463204 ATCCATCTGCCGTCAGTGAG 59.537 55.000 0.00 0.00 41.10 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 5.773575 TGCGTACAAAATTGCCTTAAATGA 58.226 33.333 0.00 0.00 0.00 2.57
12 13 3.923461 GCATGCGTACAAAATTGCCTTAA 59.077 39.130 0.00 0.00 0.00 1.85
13 14 3.192422 AGCATGCGTACAAAATTGCCTTA 59.808 39.130 13.01 0.00 30.00 2.69
14 15 2.029110 AGCATGCGTACAAAATTGCCTT 60.029 40.909 13.01 0.00 30.00 4.35
133 134 4.438744 GCAACCATAAGCATGTAAGGTGTC 60.439 45.833 0.00 0.00 0.00 3.67
191 192 8.504812 AAAAACAGAGGTAAACAATGCAAAAT 57.495 26.923 0.00 0.00 0.00 1.82
278 279 6.563422 TGGAATGTGTTTGAGAGAACAAAAG 58.437 36.000 0.00 0.00 40.86 2.27
363 364 3.690460 AGGTGGACCATTGATGTCTTTC 58.310 45.455 0.00 0.00 38.89 2.62
383 384 7.361286 CCTTCCTGTTTTTCCGATAGAAAGAAG 60.361 40.741 0.00 0.00 45.11 2.85
394 395 2.846193 TGAGACCTTCCTGTTTTTCCG 58.154 47.619 0.00 0.00 0.00 4.30
554 557 9.629878 AGAGCAATCTGAGAAATTCATAAAGAT 57.370 29.630 0.00 0.00 34.68 2.40
555 558 9.107177 GAGAGCAATCTGAGAAATTCATAAAGA 57.893 33.333 0.00 0.00 34.68 2.52
556 559 8.890718 TGAGAGCAATCTGAGAAATTCATAAAG 58.109 33.333 0.00 0.00 34.68 1.85
557 560 8.797350 TGAGAGCAATCTGAGAAATTCATAAA 57.203 30.769 0.00 0.00 34.68 1.40
576 579 3.740321 CGAGCTCCTTTTGATATGAGAGC 59.260 47.826 8.47 1.65 45.50 4.09
582 585 3.802948 ACGTCGAGCTCCTTTTGATAT 57.197 42.857 8.47 0.00 0.00 1.63
583 586 3.587797 AACGTCGAGCTCCTTTTGATA 57.412 42.857 8.47 0.00 0.00 2.15
665 668 3.501828 GTGAGTGTGTTCATACCAATGCA 59.498 43.478 0.00 0.00 32.76 3.96
675 678 2.689553 TTCAGCAGTGAGTGTGTTCA 57.310 45.000 0.00 0.00 32.98 3.18
699 702 7.716560 TGCATATGCTCATCAAGTGTAACTAAT 59.283 33.333 27.13 0.00 45.26 1.73
824 827 4.202440 CCAGGATGCCTTGAAGTAGATCAT 60.202 45.833 0.00 0.00 31.97 2.45
825 828 3.135348 CCAGGATGCCTTGAAGTAGATCA 59.865 47.826 0.00 0.00 31.97 2.92
826 829 3.135530 ACCAGGATGCCTTGAAGTAGATC 59.864 47.826 0.00 0.00 31.97 2.75
862 865 2.794981 CGAGGGTGCTCATTACTACGTG 60.795 54.545 0.00 0.00 0.00 4.49
914 917 8.594550 TGTATTATCCTAACTGGCCTCTATTTC 58.405 37.037 3.32 0.00 35.26 2.17
919 922 6.824958 TTTGTATTATCCTAACTGGCCTCT 57.175 37.500 3.32 0.00 35.26 3.69
969 972 6.037610 GGAACACATTCTCTAATAGTGGCTTG 59.962 42.308 0.00 0.00 34.98 4.01
1179 1184 7.092979 ACTGAATCAATCTTCATTCTCTCTGGA 60.093 37.037 0.00 0.00 34.76 3.86
1513 1533 3.500448 TGTTTGCATCCTCTGGTGTAA 57.500 42.857 0.00 0.00 0.00 2.41
1624 1656 4.764679 TTTCATGTTGAATCTGAACCGG 57.235 40.909 0.00 0.00 36.11 5.28
1687 1719 6.492007 TCTTCTGAAAGTTCAATGCTCATC 57.508 37.500 0.00 0.00 36.64 2.92
1725 1757 2.816087 CCCGATTGCCCAATAATCTCTG 59.184 50.000 0.00 0.00 33.44 3.35
1737 1769 2.513666 TCGCATGTCCCGATTGCC 60.514 61.111 0.00 0.00 32.76 4.52
1744 1776 1.134946 CATTTTTCCCTCGCATGTCCC 59.865 52.381 0.00 0.00 0.00 4.46
1815 1847 6.269315 TGTCGTTCATGTTGCTAAAAACAAT 58.731 32.000 0.00 0.00 42.98 2.71
1905 1946 6.073222 ACGTGAGTTTGTCAGGATTACAATTC 60.073 38.462 1.95 0.00 46.40 2.17
2047 2088 9.401058 CCATCAAGGTTAATAGATTTGAGAACT 57.599 33.333 0.00 0.00 32.00 3.01
2128 2169 7.445402 CGGGATTTTGTAGAGGATAATTGATGT 59.555 37.037 0.00 0.00 0.00 3.06
2164 2207 2.823959 TGGAACTAGTTGATACCCCGT 58.176 47.619 14.14 0.00 0.00 5.28
2191 2234 0.739462 CCTCCGCGTACATTGCTTGA 60.739 55.000 4.92 0.00 0.00 3.02
2221 2264 2.101415 TCAGAAGGATGATACCGTGCAG 59.899 50.000 0.00 0.00 34.73 4.41
2260 2303 1.430853 TCCATTGTGGGATGGTGGAAA 59.569 47.619 4.02 0.00 45.53 3.13
2262 2305 0.625316 CTCCATTGTGGGATGGTGGA 59.375 55.000 4.02 0.00 45.53 4.02
2277 2320 3.059982 CCCTCGACACAAGCTCCA 58.940 61.111 0.00 0.00 0.00 3.86
2278 2321 2.435059 GCCCTCGACACAAGCTCC 60.435 66.667 0.00 0.00 0.00 4.70
2286 2329 2.885113 CTCGACATGCCCTCGACA 59.115 61.111 3.03 0.00 35.26 4.35
2306 2349 0.681175 AGCTCCACCAACCAATTTGC 59.319 50.000 0.00 0.00 33.34 3.68
2313 2356 1.348036 ACTACTTCAGCTCCACCAACC 59.652 52.381 0.00 0.00 0.00 3.77
2348 2391 2.702478 CTCATCCTCTTGTGCCCTATGA 59.298 50.000 0.00 0.00 0.00 2.15
2349 2392 2.224475 CCTCATCCTCTTGTGCCCTATG 60.224 54.545 0.00 0.00 0.00 2.23
2396 2439 0.037419 TGATCGCTGCTGCAACTGTA 60.037 50.000 16.29 0.00 39.64 2.74
2415 2458 2.707791 ACATCGGAACTGGGATCATCAT 59.292 45.455 0.00 0.00 0.00 2.45
2425 2468 3.914312 ACAGACTACAACATCGGAACTG 58.086 45.455 0.00 0.00 0.00 3.16
2430 2473 1.909376 CCGACAGACTACAACATCGG 58.091 55.000 0.00 0.00 42.69 4.18
2471 2514 4.578516 TGAAATTCTTCATGTGGACGTTGT 59.421 37.500 0.00 0.00 36.62 3.32
2483 2526 6.241207 CGGAAGCTAAAGTGAAATTCTTCA 57.759 37.500 0.00 0.00 39.30 3.02
2504 2547 3.081804 AGTGTTTGGAAGATTAAGGCGG 58.918 45.455 0.00 0.00 0.00 6.13
2507 2550 7.393234 TGTTGGATAGTGTTTGGAAGATTAAGG 59.607 37.037 0.00 0.00 0.00 2.69
2509 2552 7.175990 GGTGTTGGATAGTGTTTGGAAGATTAA 59.824 37.037 0.00 0.00 0.00 1.40
2510 2553 6.657541 GGTGTTGGATAGTGTTTGGAAGATTA 59.342 38.462 0.00 0.00 0.00 1.75
2511 2554 5.476945 GGTGTTGGATAGTGTTTGGAAGATT 59.523 40.000 0.00 0.00 0.00 2.40
2536 2580 7.348274 TCAGTTCAAGACAAGGATCCCTATATT 59.652 37.037 8.55 0.00 31.13 1.28
2537 2581 6.846505 TCAGTTCAAGACAAGGATCCCTATAT 59.153 38.462 8.55 0.00 31.13 0.86
2603 2647 9.716556 AGGATAATTCTCTAGTTTGGACTCTTA 57.283 33.333 0.00 0.00 37.33 2.10
2604 2648 8.616799 AGGATAATTCTCTAGTTTGGACTCTT 57.383 34.615 0.00 0.00 37.33 2.85
2605 2649 7.289084 GGAGGATAATTCTCTAGTTTGGACTCT 59.711 40.741 0.00 0.00 37.33 3.24
2606 2650 7.070074 TGGAGGATAATTCTCTAGTTTGGACTC 59.930 40.741 0.00 0.00 37.33 3.36
2616 2660 6.805150 TCCTAGCATGGAGGATAATTCTCTA 58.195 40.000 0.00 0.00 38.22 2.43
2624 2668 3.923273 TCCTTCCTAGCATGGAGGATA 57.077 47.619 8.36 0.00 42.75 2.59
2632 2676 4.910304 ACAATCTGGTATCCTTCCTAGCAT 59.090 41.667 0.00 0.00 0.00 3.79
2647 2691 1.825474 AGTGGAGTCGGTACAATCTGG 59.175 52.381 0.00 0.00 0.00 3.86
2694 2738 3.492383 CGATGGATGATGTTGCTACACTC 59.508 47.826 2.28 3.78 37.03 3.51
2696 2740 3.198068 ACGATGGATGATGTTGCTACAC 58.802 45.455 2.28 0.00 37.03 2.90
2716 2760 6.205658 GGCAGATGGATGAGAGGTTTAAATAC 59.794 42.308 0.00 0.00 0.00 1.89
2740 2784 2.099756 TCTATCATGCACTCACTGACGG 59.900 50.000 0.00 0.00 0.00 4.79
2741 2785 3.427161 TCTATCATGCACTCACTGACG 57.573 47.619 0.00 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.