Multiple sequence alignment - TraesCS1A01G253000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G253000 chr1A 100.000 3941 0 0 1 3941 444258424 444254484 0.000000e+00 7278.0
1 TraesCS1A01G253000 chr1B 95.217 2676 63 20 761 3431 465976959 465979574 0.000000e+00 4172.0
2 TraesCS1A01G253000 chr1B 87.963 108 13 0 3814 3921 465979616 465979723 1.150000e-25 128.0
3 TraesCS1A01G253000 chr1D 95.013 2667 82 20 774 3436 344621160 344618541 0.000000e+00 4141.0
4 TraesCS1A01G253000 chr1D 88.654 379 28 2 1 370 344621878 344621506 7.770000e-122 448.0
5 TraesCS1A01G253000 chr1D 89.614 337 26 7 285 618 344621517 344621187 1.690000e-113 420.0
6 TraesCS1A01G253000 chr1D 92.500 200 14 1 3612 3810 290499503 290499702 6.450000e-73 285.0
7 TraesCS1A01G253000 chr1D 83.056 301 33 13 12 303 268460693 268460984 1.410000e-64 257.0
8 TraesCS1A01G253000 chr1D 88.288 111 13 0 3814 3924 344618484 344618374 2.470000e-27 134.0
9 TraesCS1A01G253000 chr1D 83.333 84 12 2 612 694 120019012 120019094 4.220000e-10 76.8
10 TraesCS1A01G253000 chr3B 85.455 385 42 6 1 371 599087565 599087181 4.780000e-104 388.0
11 TraesCS1A01G253000 chr3B 84.520 323 45 4 3477 3797 104033987 104034306 8.220000e-82 315.0
12 TraesCS1A01G253000 chr6D 85.759 316 29 7 1 302 89332468 89332155 1.770000e-83 320.0
13 TraesCS1A01G253000 chr6D 85.443 316 28 10 1 302 65354344 65354655 2.960000e-81 313.0
14 TraesCS1A01G253000 chr6D 84.024 338 38 7 3477 3810 127818243 127817918 1.060000e-80 311.0
15 TraesCS1A01G253000 chr6D 90.187 214 18 2 3598 3811 379593265 379593475 3.880000e-70 276.0
16 TraesCS1A01G253000 chr6D 90.909 154 10 3 3461 3612 98102171 98102322 1.860000e-48 204.0
17 TraesCS1A01G253000 chr6D 86.364 44 6 0 328 371 65354655 65354698 9.200000e-02 49.1
18 TraesCS1A01G253000 chr7D 85.714 315 26 11 1 302 65924458 65924766 8.220000e-82 315.0
19 TraesCS1A01G253000 chr7D 92.500 200 14 1 3612 3810 146519183 146519382 6.450000e-73 285.0
20 TraesCS1A01G253000 chr7D 81.132 318 36 14 1 302 555230295 555229986 2.370000e-57 233.0
21 TraesCS1A01G253000 chr7D 92.763 152 11 0 3461 3612 281125840 281125689 1.840000e-53 220.0
22 TraesCS1A01G253000 chr6B 85.443 316 27 11 1 302 140357089 140357399 1.060000e-80 311.0
23 TraesCS1A01G253000 chr6B 86.364 44 6 0 328 371 140357399 140357442 9.200000e-02 49.1
24 TraesCS1A01G253000 chr2B 83.090 343 53 5 3469 3807 38415785 38416126 1.380000e-79 307.0
25 TraesCS1A01G253000 chr2B 89.773 88 5 4 614 699 640491290 640491375 4.160000e-20 110.0
26 TraesCS1A01G253000 chr4D 81.472 394 45 8 1 380 39592614 39592235 8.280000e-77 298.0
27 TraesCS1A01G253000 chr4D 92.157 153 11 1 3461 3612 341704264 341704112 8.580000e-52 215.0
28 TraesCS1A01G253000 chr4D 91.503 153 10 2 3461 3612 63908117 63908267 1.440000e-49 207.0
29 TraesCS1A01G253000 chr7A 84.076 314 32 11 1 302 70311198 70311505 1.790000e-73 287.0
30 TraesCS1A01G253000 chr7A 86.301 73 9 1 622 694 714673852 714673781 1.170000e-10 78.7
31 TraesCS1A01G253000 chr2D 92.157 204 15 1 3611 3813 178434528 178434325 1.790000e-73 287.0
32 TraesCS1A01G253000 chr2D 90.909 77 7 0 615 691 527926360 527926436 1.940000e-18 104.0
33 TraesCS1A01G253000 chr2D 87.179 78 10 0 617 694 468980484 468980407 5.420000e-14 89.8
34 TraesCS1A01G253000 chr6A 81.510 384 34 12 1 372 83465113 83464755 8.340000e-72 281.0
35 TraesCS1A01G253000 chr6A 85.542 83 12 0 612 694 33259273 33259191 1.950000e-13 87.9
36 TraesCS1A01G253000 chr5D 91.584 202 14 3 3611 3810 215072490 215072290 3.880000e-70 276.0
37 TraesCS1A01G253000 chr5D 79.240 342 24 15 85 411 226518602 226518911 1.120000e-45 195.0
38 TraesCS1A01G253000 chr5D 80.242 248 33 12 109 345 283106061 283106303 5.240000e-39 172.0
39 TraesCS1A01G253000 chr4A 91.414 198 16 1 3614 3810 3838179 3837982 1.800000e-68 270.0
40 TraesCS1A01G253000 chr7B 83.737 289 31 7 1 275 557362858 557362572 3.910000e-65 259.0
41 TraesCS1A01G253000 chr3D 92.763 152 11 0 3461 3612 91417756 91417907 1.840000e-53 220.0
42 TraesCS1A01G253000 chr5B 90.909 154 13 1 3460 3612 58108 57955 5.160000e-49 206.0
43 TraesCS1A01G253000 chr5B 77.244 312 39 17 110 403 681183625 681183922 1.900000e-33 154.0
44 TraesCS1A01G253000 chr5B 90.141 71 7 0 624 694 229370261 229370191 4.190000e-15 93.5
45 TraesCS1A01G253000 chr5A 89.157 83 9 0 617 699 559036221 559036139 1.940000e-18 104.0
46 TraesCS1A01G253000 chr4B 87.179 78 10 0 617 694 164922160 164922237 5.420000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G253000 chr1A 444254484 444258424 3940 True 7278.00 7278 100.00000 1 3941 1 chr1A.!!$R1 3940
1 TraesCS1A01G253000 chr1B 465976959 465979723 2764 False 2150.00 4172 91.59000 761 3921 2 chr1B.!!$F1 3160
2 TraesCS1A01G253000 chr1D 344618374 344621878 3504 True 1285.75 4141 90.39225 1 3924 4 chr1D.!!$R1 3923

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
734 820 0.108945 CGGTAGACGGTTTCCAGACC 60.109 60.0 0.00 0.0 39.42 3.85 F
1422 1508 0.178975 ACATGCCTTTGGTTCGGGAA 60.179 50.0 0.00 0.0 0.00 3.97 F
1423 1509 0.527565 CATGCCTTTGGTTCGGGAAG 59.472 55.0 0.00 0.0 0.00 3.46 F
2754 2864 0.250338 GGGACGTGCAGAAGTTCCTT 60.250 55.0 9.96 0.0 33.23 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1696 1783 1.203001 TGGGAACAGCTTAACCCCTTG 60.203 52.381 14.02 0.0 41.44 3.61 R
2604 2714 1.224592 GGGCTTGTCGATGACCCAT 59.775 57.895 10.01 0.0 40.52 4.00 R
2775 2885 1.869767 CTTTCAGCTGATATGCGGTCC 59.130 52.381 19.04 0.0 38.13 4.46 R
3812 3967 0.107800 TTTGGGTCGACGTGTTGGAA 60.108 50.000 9.92 0.0 0.00 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 8.359642 GGCAATATTACTCTATTTTTGCCATGA 58.640 33.333 16.51 0.00 37.48 3.07
42 43 9.185192 GCAATATTACTCTATTTTTGCCATGAC 57.815 33.333 0.00 0.00 0.00 3.06
130 131 9.784531 TTTTCCATGGCAAATTTATTGTAAAGA 57.215 25.926 6.96 0.00 0.00 2.52
131 132 9.434420 TTTCCATGGCAAATTTATTGTAAAGAG 57.566 29.630 6.96 0.00 0.00 2.85
132 133 7.041107 TCCATGGCAAATTTATTGTAAAGAGC 58.959 34.615 6.96 0.00 0.00 4.09
133 134 6.817641 CCATGGCAAATTTATTGTAAAGAGCA 59.182 34.615 0.00 0.00 0.00 4.26
134 135 7.496591 CCATGGCAAATTTATTGTAAAGAGCAT 59.503 33.333 0.00 0.00 0.00 3.79
175 176 8.706492 AATATGATGCCAAGTTTACAAACATG 57.294 30.769 7.53 5.50 41.30 3.21
221 231 5.820423 TGGTATATACTTGTGTTCACATGGC 59.180 40.000 12.54 5.92 0.00 4.40
224 234 7.013274 GGTATATACTTGTGTTCACATGGCAAT 59.987 37.037 12.54 12.55 0.00 3.56
259 269 5.885449 TTCCATGGAAAACTCAAACCATT 57.115 34.783 25.13 0.00 40.55 3.16
268 278 4.853924 AACTCAAACCATTTCTGCGATT 57.146 36.364 0.00 0.00 0.00 3.34
270 280 2.919229 CTCAAACCATTTCTGCGATTGC 59.081 45.455 0.00 0.00 43.20 3.56
349 433 6.465948 AGAATGCTTTTATTCACATGGCAAA 58.534 32.000 0.00 0.00 39.08 3.68
355 439 7.228108 TGCTTTTATTCACATGGCAAATTTTCA 59.772 29.630 0.00 0.00 0.00 2.69
413 498 4.602995 TGGCTTTTATTTGTCACAACGTC 58.397 39.130 0.00 0.00 0.00 4.34
418 503 5.970140 TTTATTTGTCACAACGTCTTCGA 57.030 34.783 0.00 0.00 40.62 3.71
420 505 3.918258 TTTGTCACAACGTCTTCGAAG 57.082 42.857 19.35 19.35 40.62 3.79
463 548 8.889849 AACGTTCGATGAATATTAGGTTTTTG 57.110 30.769 0.00 0.00 0.00 2.44
542 628 5.649602 TTTTTCGCTTTTTACAAGGCATG 57.350 34.783 0.00 0.00 34.64 4.06
558 644 2.107204 GGCATGTAAGGAGGTGATGGAT 59.893 50.000 0.00 0.00 0.00 3.41
559 645 3.144506 GCATGTAAGGAGGTGATGGATG 58.855 50.000 0.00 0.00 0.00 3.51
567 653 0.745845 AGGTGATGGATGAGTTGCGC 60.746 55.000 0.00 0.00 0.00 6.09
569 655 0.654683 GTGATGGATGAGTTGCGCTC 59.345 55.000 9.73 1.40 44.36 5.03
579 665 3.276091 TTGCGCTCGGGTTGTGTG 61.276 61.111 9.73 0.00 0.00 3.82
614 700 1.801242 TTCGGGCTGATCCATCCTTA 58.199 50.000 0.00 0.00 36.21 2.69
615 701 1.342074 TCGGGCTGATCCATCCTTAG 58.658 55.000 0.00 0.00 36.21 2.18
616 702 1.051812 CGGGCTGATCCATCCTTAGT 58.948 55.000 0.00 0.00 36.21 2.24
617 703 2.158370 TCGGGCTGATCCATCCTTAGTA 60.158 50.000 0.00 0.00 36.21 1.82
618 704 2.028930 CGGGCTGATCCATCCTTAGTAC 60.029 54.545 0.00 0.00 36.21 2.73
619 705 3.243724 GGGCTGATCCATCCTTAGTACT 58.756 50.000 0.00 0.00 36.21 2.73
620 706 3.648545 GGGCTGATCCATCCTTAGTACTT 59.351 47.826 0.00 0.00 36.21 2.24
621 707 4.262678 GGGCTGATCCATCCTTAGTACTTC 60.263 50.000 0.00 0.00 36.21 3.01
622 708 4.591072 GGCTGATCCATCCTTAGTACTTCT 59.409 45.833 0.00 0.00 34.01 2.85
623 709 5.071115 GGCTGATCCATCCTTAGTACTTCTT 59.929 44.000 0.00 0.00 34.01 2.52
624 710 6.220201 GCTGATCCATCCTTAGTACTTCTTC 58.780 44.000 0.00 0.00 0.00 2.87
625 711 6.041523 GCTGATCCATCCTTAGTACTTCTTCT 59.958 42.308 0.00 0.00 0.00 2.85
626 712 7.353414 TGATCCATCCTTAGTACTTCTTCTG 57.647 40.000 0.00 0.00 0.00 3.02
627 713 6.897966 TGATCCATCCTTAGTACTTCTTCTGT 59.102 38.462 0.00 0.00 0.00 3.41
628 714 8.059461 TGATCCATCCTTAGTACTTCTTCTGTA 58.941 37.037 0.00 0.00 0.00 2.74
629 715 8.840200 ATCCATCCTTAGTACTTCTTCTGTAA 57.160 34.615 0.00 0.00 0.00 2.41
630 716 8.660295 TCCATCCTTAGTACTTCTTCTGTAAA 57.340 34.615 0.00 0.00 0.00 2.01
631 717 9.268282 TCCATCCTTAGTACTTCTTCTGTAAAT 57.732 33.333 0.00 0.00 0.00 1.40
632 718 9.892130 CCATCCTTAGTACTTCTTCTGTAAATT 57.108 33.333 0.00 0.00 0.00 1.82
677 763 9.692749 TCATTAAAATAGTAATCGAATCGCTCT 57.307 29.630 0.00 0.00 0.00 4.09
691 777 8.651200 TCGAATCGCTCTTATATTAGTTTACG 57.349 34.615 0.00 0.00 0.00 3.18
692 778 7.747799 TCGAATCGCTCTTATATTAGTTTACGG 59.252 37.037 0.00 0.00 0.00 4.02
693 779 7.747799 CGAATCGCTCTTATATTAGTTTACGGA 59.252 37.037 0.00 0.00 0.00 4.69
694 780 9.570488 GAATCGCTCTTATATTAGTTTACGGAT 57.430 33.333 0.00 0.00 0.00 4.18
697 783 9.440773 TCGCTCTTATATTAGTTTACGGATAGA 57.559 33.333 0.00 0.00 0.00 1.98
699 785 9.505995 GCTCTTATATTAGTTTACGGATAGAGC 57.494 37.037 0.00 0.00 35.52 4.09
706 792 5.099042 AGTTTACGGATAGAGCACCAAAT 57.901 39.130 0.00 0.00 0.00 2.32
711 797 7.724305 TTACGGATAGAGCACCAAATAAATC 57.276 36.000 0.00 0.00 0.00 2.17
714 800 5.107453 CGGATAGAGCACCAAATAAATCGTC 60.107 44.000 0.00 0.00 0.00 4.20
715 801 5.179555 GGATAGAGCACCAAATAAATCGTCC 59.820 44.000 0.00 0.00 0.00 4.79
719 805 2.937799 GCACCAAATAAATCGTCCGGTA 59.062 45.455 0.00 0.00 0.00 4.02
721 807 4.435425 CACCAAATAAATCGTCCGGTAGA 58.565 43.478 0.00 2.18 0.00 2.59
722 808 4.269363 CACCAAATAAATCGTCCGGTAGAC 59.731 45.833 0.00 0.00 42.54 2.59
733 819 3.413522 CGGTAGACGGTTTCCAGAC 57.586 57.895 0.00 0.00 39.42 3.51
734 820 0.108945 CGGTAGACGGTTTCCAGACC 60.109 60.000 0.00 0.00 39.42 3.85
735 821 1.264295 GGTAGACGGTTTCCAGACCT 58.736 55.000 0.00 0.00 37.56 3.85
736 822 1.067071 GGTAGACGGTTTCCAGACCTG 60.067 57.143 0.00 0.00 37.56 4.00
737 823 1.891150 GTAGACGGTTTCCAGACCTGA 59.109 52.381 0.00 0.00 37.56 3.86
738 824 0.680061 AGACGGTTTCCAGACCTGAC 59.320 55.000 0.00 0.00 37.56 3.51
739 825 0.680061 GACGGTTTCCAGACCTGACT 59.320 55.000 0.00 0.00 37.56 3.41
740 826 1.070289 GACGGTTTCCAGACCTGACTT 59.930 52.381 0.00 0.00 37.56 3.01
741 827 1.202651 ACGGTTTCCAGACCTGACTTG 60.203 52.381 0.00 0.00 37.56 3.16
742 828 1.239347 GGTTTCCAGACCTGACTTGC 58.761 55.000 0.00 0.00 36.73 4.01
743 829 0.868406 GTTTCCAGACCTGACTTGCG 59.132 55.000 0.00 0.00 0.00 4.85
744 830 0.250295 TTTCCAGACCTGACTTGCGG 60.250 55.000 0.00 0.00 0.00 5.69
745 831 2.731691 TTCCAGACCTGACTTGCGGC 62.732 60.000 0.00 0.00 0.00 6.53
746 832 2.031012 CAGACCTGACTTGCGGCA 59.969 61.111 0.00 0.00 0.00 5.69
747 833 1.597854 CAGACCTGACTTGCGGCAA 60.598 57.895 15.55 15.55 0.00 4.52
748 834 0.957395 CAGACCTGACTTGCGGCAAT 60.957 55.000 16.80 6.61 0.00 3.56
749 835 0.250901 AGACCTGACTTGCGGCAATT 60.251 50.000 16.80 10.93 0.00 2.32
750 836 1.003118 AGACCTGACTTGCGGCAATTA 59.997 47.619 16.80 4.82 0.00 1.40
751 837 2.017049 GACCTGACTTGCGGCAATTAT 58.983 47.619 16.80 4.91 0.00 1.28
752 838 2.017049 ACCTGACTTGCGGCAATTATC 58.983 47.619 16.80 14.08 0.00 1.75
753 839 1.003545 CCTGACTTGCGGCAATTATCG 60.004 52.381 16.80 6.61 0.00 2.92
754 840 1.003545 CTGACTTGCGGCAATTATCGG 60.004 52.381 16.80 14.48 0.00 4.18
755 841 0.317020 GACTTGCGGCAATTATCGGC 60.317 55.000 16.80 2.09 0.00 5.54
759 845 4.893241 CGGCAATTATCGGCGTTC 57.107 55.556 6.85 0.00 46.26 3.95
760 846 2.307363 CGGCAATTATCGGCGTTCT 58.693 52.632 6.85 0.00 46.26 3.01
761 847 0.655733 CGGCAATTATCGGCGTTCTT 59.344 50.000 6.85 0.00 46.26 2.52
762 848 1.862201 CGGCAATTATCGGCGTTCTTA 59.138 47.619 6.85 0.00 46.26 2.10
763 849 2.478894 CGGCAATTATCGGCGTTCTTAT 59.521 45.455 6.85 0.00 46.26 1.73
764 850 3.059188 CGGCAATTATCGGCGTTCTTATT 60.059 43.478 6.85 0.00 46.26 1.40
843 929 1.273327 CCGTATATCCCCGTAACCACC 59.727 57.143 0.00 0.00 0.00 4.61
1052 1138 1.755008 GGTCCTCCTCTCAGGTCCG 60.755 68.421 0.00 0.00 36.53 4.79
1229 1315 0.885196 TTTCGTTGCTATTGTGGGGC 59.115 50.000 0.00 0.00 0.00 5.80
1422 1508 0.178975 ACATGCCTTTGGTTCGGGAA 60.179 50.000 0.00 0.00 0.00 3.97
1423 1509 0.527565 CATGCCTTTGGTTCGGGAAG 59.472 55.000 0.00 0.00 0.00 3.46
1468 1554 4.823989 CCTTTATTCATCTGTTAGGCTGGG 59.176 45.833 0.00 0.00 0.00 4.45
1492 1578 7.551617 GGGTTTATGTGCATTACTGTTAGTACT 59.448 37.037 0.00 0.00 28.93 2.73
1603 1689 4.458295 AGGAGCTTCAAACATCAACAGATG 59.542 41.667 0.00 4.06 43.75 2.90
1658 1744 5.767168 GGAACTTGGAATCAGGAGAATATGG 59.233 44.000 0.00 0.00 0.00 2.74
1665 1751 5.545723 GGAATCAGGAGAATATGGAGGAGAA 59.454 44.000 0.00 0.00 0.00 2.87
1774 1863 9.719355 TTTAGATCAGTGTAAGCTTGTTATTGA 57.281 29.630 9.86 7.99 0.00 2.57
1828 1917 4.454504 CAGTGTTAACCTATTTGCGGTTCT 59.545 41.667 2.48 0.00 43.39 3.01
1829 1918 5.048991 CAGTGTTAACCTATTTGCGGTTCTT 60.049 40.000 2.48 0.00 43.39 2.52
1830 1919 6.148150 CAGTGTTAACCTATTTGCGGTTCTTA 59.852 38.462 2.48 0.00 43.39 2.10
1831 1920 6.711645 AGTGTTAACCTATTTGCGGTTCTTAA 59.288 34.615 2.48 0.00 43.39 1.85
1832 1921 7.019418 GTGTTAACCTATTTGCGGTTCTTAAG 58.981 38.462 2.48 0.00 43.39 1.85
1833 1922 6.935771 TGTTAACCTATTTGCGGTTCTTAAGA 59.064 34.615 0.00 0.00 43.39 2.10
1834 1923 7.608761 TGTTAACCTATTTGCGGTTCTTAAGAT 59.391 33.333 5.89 0.00 43.39 2.40
1835 1924 8.456471 GTTAACCTATTTGCGGTTCTTAAGATT 58.544 33.333 5.89 0.00 43.39 2.40
1836 1925 7.462571 AACCTATTTGCGGTTCTTAAGATTT 57.537 32.000 5.89 0.00 40.63 2.17
1837 1926 7.085052 ACCTATTTGCGGTTCTTAAGATTTC 57.915 36.000 5.89 0.53 0.00 2.17
1838 1927 6.657541 ACCTATTTGCGGTTCTTAAGATTTCA 59.342 34.615 5.89 0.00 0.00 2.69
1839 1928 7.339466 ACCTATTTGCGGTTCTTAAGATTTCAT 59.661 33.333 5.89 0.00 0.00 2.57
1840 1929 8.836413 CCTATTTGCGGTTCTTAAGATTTCATA 58.164 33.333 5.89 0.00 0.00 2.15
1841 1930 9.651718 CTATTTGCGGTTCTTAAGATTTCATAC 57.348 33.333 5.89 0.00 0.00 2.39
1842 1931 7.441890 TTTGCGGTTCTTAAGATTTCATACA 57.558 32.000 5.89 0.00 0.00 2.29
1843 1932 7.441890 TTGCGGTTCTTAAGATTTCATACAA 57.558 32.000 5.89 2.88 0.00 2.41
1844 1933 7.624360 TGCGGTTCTTAAGATTTCATACAAT 57.376 32.000 5.89 0.00 0.00 2.71
1845 1934 7.471721 TGCGGTTCTTAAGATTTCATACAATG 58.528 34.615 5.89 0.00 0.00 2.82
1846 1935 7.120579 TGCGGTTCTTAAGATTTCATACAATGT 59.879 33.333 5.89 0.00 0.00 2.71
1847 1936 7.429340 GCGGTTCTTAAGATTTCATACAATGTG 59.571 37.037 5.89 0.00 0.00 3.21
2209 2318 0.936297 GTTCAGGCTTGCGCAGTTTG 60.936 55.000 11.31 8.52 38.10 2.93
2233 2342 3.508845 ACACCACCTTTTGCACTATCT 57.491 42.857 0.00 0.00 0.00 1.98
2275 2384 2.136026 AGGGAGAGTGGAAAAGGTTGT 58.864 47.619 0.00 0.00 0.00 3.32
2604 2714 1.226859 GTACGACAGCAGCCGCATA 60.227 57.895 0.00 0.00 42.27 3.14
2754 2864 0.250338 GGGACGTGCAGAAGTTCCTT 60.250 55.000 9.96 0.00 33.23 3.36
2775 2885 3.804036 TGACACAAACCCAGAGTACAAG 58.196 45.455 0.00 0.00 0.00 3.16
2838 2948 2.992124 TTGTTGAGGAGACCGTTTCA 57.008 45.000 0.00 0.00 0.00 2.69
2946 3056 1.905215 AGCAGTGAGAACTAGCCATGT 59.095 47.619 0.00 0.00 0.00 3.21
2972 3082 2.050077 GCAAAACTGTCGCCTGCC 60.050 61.111 0.00 0.00 0.00 4.85
3006 3116 3.961408 TCCTACCTCATCTACCTTGAAGC 59.039 47.826 0.00 0.00 0.00 3.86
3023 3133 3.258372 TGAAGCTAGTCATCAAGTCGGTT 59.742 43.478 0.00 0.00 0.00 4.44
3024 3134 3.512033 AGCTAGTCATCAAGTCGGTTC 57.488 47.619 0.00 0.00 0.00 3.62
3025 3135 3.093057 AGCTAGTCATCAAGTCGGTTCT 58.907 45.455 0.00 0.00 0.00 3.01
3026 3136 3.129638 AGCTAGTCATCAAGTCGGTTCTC 59.870 47.826 0.00 0.00 0.00 2.87
3027 3137 3.129638 GCTAGTCATCAAGTCGGTTCTCT 59.870 47.826 0.00 0.00 0.00 3.10
3028 3138 3.859411 AGTCATCAAGTCGGTTCTCTC 57.141 47.619 0.00 0.00 0.00 3.20
3080 3190 3.614092 TCCAATGCACTGAATCTCTTCC 58.386 45.455 0.00 0.00 0.00 3.46
3136 3248 0.820871 CTCGAGAAGGGCTGTAGCTT 59.179 55.000 6.58 0.00 41.70 3.74
3137 3249 0.532573 TCGAGAAGGGCTGTAGCTTG 59.467 55.000 3.63 0.00 41.70 4.01
3191 3303 1.906574 TCCTTGAGTTTACCATCCGCT 59.093 47.619 0.00 0.00 0.00 5.52
3329 3441 0.877071 ATTCTGCACTGCGAAACCTG 59.123 50.000 10.81 0.00 0.00 4.00
3334 3446 2.343101 TGCACTGCGAAACCTGTATAC 58.657 47.619 0.00 0.00 0.00 1.47
3335 3447 2.028476 TGCACTGCGAAACCTGTATACT 60.028 45.455 4.17 0.00 0.00 2.12
3336 3448 2.603560 GCACTGCGAAACCTGTATACTC 59.396 50.000 4.17 0.00 0.00 2.59
3339 3451 3.119101 ACTGCGAAACCTGTATACTCCAG 60.119 47.826 4.17 5.53 0.00 3.86
3340 3452 3.093814 TGCGAAACCTGTATACTCCAGA 58.906 45.455 4.17 0.00 31.38 3.86
3343 3455 4.202121 GCGAAACCTGTATACTCCAGATGA 60.202 45.833 4.17 0.00 31.38 2.92
3344 3456 5.681437 GCGAAACCTGTATACTCCAGATGAA 60.681 44.000 4.17 0.00 31.38 2.57
3345 3457 5.980116 CGAAACCTGTATACTCCAGATGAAG 59.020 44.000 4.17 0.00 31.38 3.02
3346 3458 5.878406 AACCTGTATACTCCAGATGAAGG 57.122 43.478 4.17 1.74 31.38 3.46
3348 3460 3.900601 CCTGTATACTCCAGATGAAGGCT 59.099 47.826 4.17 0.00 31.38 4.58
3349 3461 4.262377 CCTGTATACTCCAGATGAAGGCTG 60.262 50.000 4.17 0.00 31.38 4.85
3350 3462 4.546674 TGTATACTCCAGATGAAGGCTGA 58.453 43.478 4.17 0.00 35.39 4.26
3353 3465 2.194859 ACTCCAGATGAAGGCTGACAT 58.805 47.619 7.07 7.07 35.39 3.06
3354 3466 3.378512 ACTCCAGATGAAGGCTGACATA 58.621 45.455 7.30 0.00 35.39 2.29
3355 3467 3.133721 ACTCCAGATGAAGGCTGACATAC 59.866 47.826 7.30 3.21 35.39 2.39
3356 3468 3.378512 TCCAGATGAAGGCTGACATACT 58.621 45.455 7.30 4.95 35.39 2.12
3357 3469 3.386078 TCCAGATGAAGGCTGACATACTC 59.614 47.826 7.30 0.00 35.39 2.59
3358 3470 3.494048 CCAGATGAAGGCTGACATACTCC 60.494 52.174 7.30 0.00 35.39 3.85
3359 3471 3.133542 CAGATGAAGGCTGACATACTCCA 59.866 47.826 7.30 0.00 35.39 3.86
3360 3472 3.776969 AGATGAAGGCTGACATACTCCAA 59.223 43.478 7.30 0.00 0.00 3.53
3361 3473 3.616956 TGAAGGCTGACATACTCCAAG 57.383 47.619 0.00 0.00 0.00 3.61
3362 3474 3.173151 TGAAGGCTGACATACTCCAAGA 58.827 45.455 0.00 0.00 0.00 3.02
3363 3475 3.776969 TGAAGGCTGACATACTCCAAGAT 59.223 43.478 0.00 0.00 0.00 2.40
3364 3476 4.225942 TGAAGGCTGACATACTCCAAGATT 59.774 41.667 0.00 0.00 0.00 2.40
3365 3477 4.414337 AGGCTGACATACTCCAAGATTC 57.586 45.455 0.00 0.00 0.00 2.52
3366 3478 4.036518 AGGCTGACATACTCCAAGATTCT 58.963 43.478 0.00 0.00 0.00 2.40
3393 3505 2.086610 ACCACAAATTCTGGCAAGGT 57.913 45.000 2.60 0.00 31.13 3.50
3395 3507 1.068333 CCACAAATTCTGGCAAGGTCG 60.068 52.381 0.00 0.00 0.00 4.79
3442 3597 5.469421 CAGATGAAGGCTCACATAAATCCTC 59.531 44.000 7.04 0.00 33.30 3.71
3446 3601 5.045651 TGAAGGCTCACATAAATCCTCAGAA 60.046 40.000 0.00 0.00 0.00 3.02
3457 3612 4.437682 AATCCTCAGAACAACTCCAACA 57.562 40.909 0.00 0.00 0.00 3.33
3458 3613 3.194005 TCCTCAGAACAACTCCAACAC 57.806 47.619 0.00 0.00 0.00 3.32
3459 3614 1.867233 CCTCAGAACAACTCCAACACG 59.133 52.381 0.00 0.00 0.00 4.49
3460 3615 1.867233 CTCAGAACAACTCCAACACGG 59.133 52.381 0.00 0.00 0.00 4.94
3461 3616 0.944386 CAGAACAACTCCAACACGGG 59.056 55.000 0.00 0.00 34.36 5.28
3462 3617 0.179029 AGAACAACTCCAACACGGGG 60.179 55.000 0.00 0.00 43.42 5.73
3463 3618 0.179040 GAACAACTCCAACACGGGGA 60.179 55.000 0.00 0.00 37.51 4.81
3471 3626 2.473070 TCCAACACGGGGAGAATATCA 58.527 47.619 0.00 0.00 34.36 2.15
3472 3627 3.045634 TCCAACACGGGGAGAATATCAT 58.954 45.455 0.00 0.00 34.36 2.45
3473 3628 4.228010 TCCAACACGGGGAGAATATCATA 58.772 43.478 0.00 0.00 34.36 2.15
3474 3629 4.039973 TCCAACACGGGGAGAATATCATAC 59.960 45.833 0.00 0.00 34.36 2.39
3475 3630 3.936372 ACACGGGGAGAATATCATACG 57.064 47.619 0.00 0.00 0.00 3.06
3476 3631 2.561419 ACACGGGGAGAATATCATACGG 59.439 50.000 0.00 0.00 0.00 4.02
3477 3632 2.823747 CACGGGGAGAATATCATACGGA 59.176 50.000 0.00 0.00 0.00 4.69
3478 3633 3.257375 CACGGGGAGAATATCATACGGAA 59.743 47.826 0.00 0.00 0.00 4.30
3479 3634 3.899360 ACGGGGAGAATATCATACGGAAA 59.101 43.478 0.00 0.00 0.00 3.13
3480 3635 4.243270 CGGGGAGAATATCATACGGAAAC 58.757 47.826 0.00 0.00 0.00 2.78
3481 3636 4.576879 GGGGAGAATATCATACGGAAACC 58.423 47.826 0.00 0.00 0.00 3.27
3482 3637 4.041198 GGGGAGAATATCATACGGAAACCA 59.959 45.833 0.00 0.00 0.00 3.67
3483 3638 5.455612 GGGGAGAATATCATACGGAAACCAA 60.456 44.000 0.00 0.00 0.00 3.67
3484 3639 6.238648 GGGAGAATATCATACGGAAACCAAT 58.761 40.000 0.00 0.00 0.00 3.16
3485 3640 7.391620 GGGAGAATATCATACGGAAACCAATA 58.608 38.462 0.00 0.00 0.00 1.90
3486 3641 8.047310 GGGAGAATATCATACGGAAACCAATAT 58.953 37.037 0.00 0.00 0.00 1.28
3487 3642 9.449719 GGAGAATATCATACGGAAACCAATATT 57.550 33.333 0.00 0.00 0.00 1.28
3493 3648 8.690203 ATCATACGGAAACCAATATTCAATGA 57.310 30.769 0.00 0.00 32.01 2.57
3494 3649 8.512966 TCATACGGAAACCAATATTCAATGAA 57.487 30.769 0.00 0.00 0.00 2.57
3495 3650 8.961634 TCATACGGAAACCAATATTCAATGAAA 58.038 29.630 0.00 0.00 0.00 2.69
3496 3651 9.579768 CATACGGAAACCAATATTCAATGAAAA 57.420 29.630 0.00 0.00 0.00 2.29
3499 3654 9.500785 ACGGAAACCAATATTCAATGAAAATTT 57.499 25.926 0.00 0.00 0.00 1.82
3500 3655 9.971744 CGGAAACCAATATTCAATGAAAATTTC 57.028 29.630 0.00 0.00 0.00 2.17
3501 3656 9.971744 GGAAACCAATATTCAATGAAAATTTCG 57.028 29.630 0.00 0.00 0.00 3.46
3504 3659 9.703892 AACCAATATTCAATGAAAATTTCGTGA 57.296 25.926 0.00 4.71 0.00 4.35
3505 3660 9.703892 ACCAATATTCAATGAAAATTTCGTGAA 57.296 25.926 19.81 19.81 39.26 3.18
3562 3717 8.429237 AAAAATGTGGGATGTTAATAAGGTGA 57.571 30.769 0.00 0.00 0.00 4.02
3563 3718 8.608185 AAAATGTGGGATGTTAATAAGGTGAT 57.392 30.769 0.00 0.00 0.00 3.06
3564 3719 7.587037 AATGTGGGATGTTAATAAGGTGATG 57.413 36.000 0.00 0.00 0.00 3.07
3565 3720 6.073447 TGTGGGATGTTAATAAGGTGATGT 57.927 37.500 0.00 0.00 0.00 3.06
3566 3721 6.489603 TGTGGGATGTTAATAAGGTGATGTT 58.510 36.000 0.00 0.00 0.00 2.71
3567 3722 6.951198 TGTGGGATGTTAATAAGGTGATGTTT 59.049 34.615 0.00 0.00 0.00 2.83
3568 3723 7.453126 TGTGGGATGTTAATAAGGTGATGTTTT 59.547 33.333 0.00 0.00 0.00 2.43
3569 3724 8.962679 GTGGGATGTTAATAAGGTGATGTTTTA 58.037 33.333 0.00 0.00 0.00 1.52
3570 3725 9.707957 TGGGATGTTAATAAGGTGATGTTTTAT 57.292 29.630 0.00 0.00 0.00 1.40
3609 3764 8.689251 TTCTAGTTGAGAAACATTACGAGATG 57.311 34.615 0.00 0.00 41.39 2.90
3610 3765 7.827701 TCTAGTTGAGAAACATTACGAGATGT 58.172 34.615 0.00 0.00 41.83 3.06
3611 3766 6.712241 AGTTGAGAAACATTACGAGATGTG 57.288 37.500 8.69 0.00 40.03 3.21
3612 3767 5.639506 AGTTGAGAAACATTACGAGATGTGG 59.360 40.000 8.69 0.00 40.03 4.17
3613 3768 3.932710 TGAGAAACATTACGAGATGTGGC 59.067 43.478 8.69 5.23 40.03 5.01
3614 3769 3.932710 GAGAAACATTACGAGATGTGGCA 59.067 43.478 8.69 0.00 40.03 4.92
3615 3770 3.684788 AGAAACATTACGAGATGTGGCAC 59.315 43.478 11.55 11.55 40.03 5.01
3616 3771 3.334583 AACATTACGAGATGTGGCACT 57.665 42.857 19.83 4.13 40.03 4.40
3617 3772 4.465632 AACATTACGAGATGTGGCACTA 57.534 40.909 19.83 5.69 40.03 2.74
3618 3773 4.672587 ACATTACGAGATGTGGCACTAT 57.327 40.909 19.83 10.53 38.75 2.12
3619 3774 5.023533 ACATTACGAGATGTGGCACTATT 57.976 39.130 19.83 3.49 38.75 1.73
3620 3775 5.428253 ACATTACGAGATGTGGCACTATTT 58.572 37.500 19.83 6.04 38.75 1.40
3621 3776 6.578944 ACATTACGAGATGTGGCACTATTTA 58.421 36.000 19.83 0.00 38.75 1.40
3622 3777 7.045416 ACATTACGAGATGTGGCACTATTTAA 58.955 34.615 19.83 8.91 38.75 1.52
3623 3778 6.897259 TTACGAGATGTGGCACTATTTAAC 57.103 37.500 19.83 0.00 0.00 2.01
3624 3779 4.827692 ACGAGATGTGGCACTATTTAACA 58.172 39.130 19.83 0.00 0.00 2.41
3625 3780 4.630069 ACGAGATGTGGCACTATTTAACAC 59.370 41.667 19.83 0.00 0.00 3.32
3626 3781 4.870426 CGAGATGTGGCACTATTTAACACT 59.130 41.667 19.83 3.33 33.44 3.55
3627 3782 5.220472 CGAGATGTGGCACTATTTAACACTG 60.220 44.000 19.83 0.00 33.44 3.66
3628 3783 5.804639 AGATGTGGCACTATTTAACACTGA 58.195 37.500 19.83 0.00 33.44 3.41
3629 3784 6.418101 AGATGTGGCACTATTTAACACTGAT 58.582 36.000 19.83 0.00 33.44 2.90
3630 3785 6.886459 AGATGTGGCACTATTTAACACTGATT 59.114 34.615 19.83 0.00 33.44 2.57
3631 3786 6.892658 TGTGGCACTATTTAACACTGATTT 57.107 33.333 19.83 0.00 33.44 2.17
3632 3787 7.283625 TGTGGCACTATTTAACACTGATTTT 57.716 32.000 19.83 0.00 33.44 1.82
3633 3788 7.144661 TGTGGCACTATTTAACACTGATTTTG 58.855 34.615 19.83 0.00 33.44 2.44
3634 3789 7.145323 GTGGCACTATTTAACACTGATTTTGT 58.855 34.615 11.13 0.00 0.00 2.83
3635 3790 7.326063 GTGGCACTATTTAACACTGATTTTGTC 59.674 37.037 11.13 0.00 0.00 3.18
3636 3791 7.230510 TGGCACTATTTAACACTGATTTTGTCT 59.769 33.333 0.00 0.00 0.00 3.41
3637 3792 8.082242 GGCACTATTTAACACTGATTTTGTCTT 58.918 33.333 0.00 0.00 0.00 3.01
3638 3793 9.463443 GCACTATTTAACACTGATTTTGTCTTT 57.537 29.630 0.00 0.00 0.00 2.52
3646 3801 8.579682 AACACTGATTTTGTCTTTTTCATAGC 57.420 30.769 0.00 0.00 0.00 2.97
3647 3802 7.945134 ACACTGATTTTGTCTTTTTCATAGCT 58.055 30.769 0.00 0.00 0.00 3.32
3648 3803 8.078596 ACACTGATTTTGTCTTTTTCATAGCTC 58.921 33.333 0.00 0.00 0.00 4.09
3649 3804 8.077991 CACTGATTTTGTCTTTTTCATAGCTCA 58.922 33.333 0.00 0.00 0.00 4.26
3650 3805 8.078596 ACTGATTTTGTCTTTTTCATAGCTCAC 58.921 33.333 0.00 0.00 0.00 3.51
3651 3806 7.939782 TGATTTTGTCTTTTTCATAGCTCACA 58.060 30.769 0.00 0.00 0.00 3.58
3652 3807 8.579006 TGATTTTGTCTTTTTCATAGCTCACAT 58.421 29.630 0.00 0.00 0.00 3.21
3653 3808 8.976986 ATTTTGTCTTTTTCATAGCTCACATC 57.023 30.769 0.00 0.00 0.00 3.06
3654 3809 7.750229 TTTGTCTTTTTCATAGCTCACATCT 57.250 32.000 0.00 0.00 0.00 2.90
3655 3810 6.974932 TGTCTTTTTCATAGCTCACATCTC 57.025 37.500 0.00 0.00 0.00 2.75
3656 3811 5.578336 TGTCTTTTTCATAGCTCACATCTCG 59.422 40.000 0.00 0.00 0.00 4.04
3657 3812 5.578727 GTCTTTTTCATAGCTCACATCTCGT 59.421 40.000 0.00 0.00 0.00 4.18
3658 3813 6.752351 GTCTTTTTCATAGCTCACATCTCGTA 59.248 38.462 0.00 0.00 0.00 3.43
3659 3814 7.275779 GTCTTTTTCATAGCTCACATCTCGTAA 59.724 37.037 0.00 0.00 0.00 3.18
3660 3815 7.981789 TCTTTTTCATAGCTCACATCTCGTAAT 59.018 33.333 0.00 0.00 0.00 1.89
3661 3816 7.468922 TTTTCATAGCTCACATCTCGTAATG 57.531 36.000 0.00 0.00 0.00 1.90
3662 3817 5.774498 TCATAGCTCACATCTCGTAATGT 57.226 39.130 0.00 0.53 40.49 2.71
3674 3829 8.373048 ACATCTCGTAATGTGTTTTAACTTGA 57.627 30.769 4.93 0.00 38.43 3.02
3675 3830 8.832521 ACATCTCGTAATGTGTTTTAACTTGAA 58.167 29.630 4.93 0.00 38.43 2.69
3676 3831 9.658475 CATCTCGTAATGTGTTTTAACTTGAAA 57.342 29.630 0.00 0.00 0.00 2.69
3712 3867 6.496338 AAAAACCATCATCCTCTTAACGTC 57.504 37.500 0.00 0.00 0.00 4.34
3713 3868 3.821421 ACCATCATCCTCTTAACGTCC 57.179 47.619 0.00 0.00 0.00 4.79
3714 3869 3.375699 ACCATCATCCTCTTAACGTCCT 58.624 45.455 0.00 0.00 0.00 3.85
3715 3870 4.543689 ACCATCATCCTCTTAACGTCCTA 58.456 43.478 0.00 0.00 0.00 2.94
3716 3871 4.341520 ACCATCATCCTCTTAACGTCCTAC 59.658 45.833 0.00 0.00 0.00 3.18
3717 3872 4.341235 CCATCATCCTCTTAACGTCCTACA 59.659 45.833 0.00 0.00 0.00 2.74
3718 3873 5.011125 CCATCATCCTCTTAACGTCCTACAT 59.989 44.000 0.00 0.00 0.00 2.29
3719 3874 6.463049 CCATCATCCTCTTAACGTCCTACATT 60.463 42.308 0.00 0.00 0.00 2.71
3720 3875 6.540438 TCATCCTCTTAACGTCCTACATTT 57.460 37.500 0.00 0.00 0.00 2.32
3721 3876 6.942976 TCATCCTCTTAACGTCCTACATTTT 58.057 36.000 0.00 0.00 0.00 1.82
3722 3877 7.391620 TCATCCTCTTAACGTCCTACATTTTT 58.608 34.615 0.00 0.00 0.00 1.94
3759 3914 8.835467 TGACACTTTAAAACATCTTTTTCTCG 57.165 30.769 0.00 0.00 31.74 4.04
3760 3915 8.455682 TGACACTTTAAAACATCTTTTTCTCGT 58.544 29.630 0.00 0.00 31.74 4.18
3761 3916 8.614994 ACACTTTAAAACATCTTTTTCTCGTG 57.385 30.769 0.00 0.00 31.74 4.35
3762 3917 7.700656 ACACTTTAAAACATCTTTTTCTCGTGG 59.299 33.333 0.00 0.00 31.74 4.94
3763 3918 7.700656 CACTTTAAAACATCTTTTTCTCGTGGT 59.299 33.333 0.00 0.00 31.74 4.16
3764 3919 8.248253 ACTTTAAAACATCTTTTTCTCGTGGTT 58.752 29.630 0.00 0.00 31.74 3.67
3765 3920 8.989653 TTTAAAACATCTTTTTCTCGTGGTTT 57.010 26.923 0.00 0.00 34.43 3.27
3766 3921 8.989653 TTAAAACATCTTTTTCTCGTGGTTTT 57.010 26.923 0.00 0.00 39.60 2.43
3767 3922 7.899178 AAAACATCTTTTTCTCGTGGTTTTT 57.101 28.000 0.00 0.00 34.61 1.94
3768 3923 8.989653 AAAACATCTTTTTCTCGTGGTTTTTA 57.010 26.923 0.00 0.00 34.61 1.52
3769 3924 9.594478 AAAACATCTTTTTCTCGTGGTTTTTAT 57.406 25.926 0.00 0.00 34.61 1.40
3770 3925 8.797266 AACATCTTTTTCTCGTGGTTTTTATC 57.203 30.769 0.00 0.00 0.00 1.75
3771 3926 7.075741 ACATCTTTTTCTCGTGGTTTTTATCG 58.924 34.615 0.00 0.00 0.00 2.92
3772 3927 5.992729 TCTTTTTCTCGTGGTTTTTATCGG 58.007 37.500 0.00 0.00 0.00 4.18
3773 3928 5.528320 TCTTTTTCTCGTGGTTTTTATCGGT 59.472 36.000 0.00 0.00 0.00 4.69
3774 3929 5.754543 TTTTCTCGTGGTTTTTATCGGTT 57.245 34.783 0.00 0.00 0.00 4.44
3775 3930 5.754543 TTTCTCGTGGTTTTTATCGGTTT 57.245 34.783 0.00 0.00 0.00 3.27
3776 3931 4.996062 TCTCGTGGTTTTTATCGGTTTC 57.004 40.909 0.00 0.00 0.00 2.78
3777 3932 3.747529 TCTCGTGGTTTTTATCGGTTTCC 59.252 43.478 0.00 0.00 0.00 3.13
3778 3933 3.474600 TCGTGGTTTTTATCGGTTTCCA 58.525 40.909 0.00 0.00 0.00 3.53
3779 3934 3.250521 TCGTGGTTTTTATCGGTTTCCAC 59.749 43.478 0.00 0.00 39.97 4.02
3780 3935 3.609879 CGTGGTTTTTATCGGTTTCCACC 60.610 47.826 0.00 0.00 40.16 4.61
3790 3945 1.324383 GGTTTCCACCGAATGTTGGT 58.676 50.000 0.00 0.00 41.47 3.67
3791 3946 1.684450 GGTTTCCACCGAATGTTGGTT 59.316 47.619 0.00 0.00 37.72 3.67
3792 3947 2.101750 GGTTTCCACCGAATGTTGGTTT 59.898 45.455 0.00 0.00 37.72 3.27
3793 3948 3.377439 GTTTCCACCGAATGTTGGTTTC 58.623 45.455 0.00 0.00 37.72 2.78
3794 3949 1.611519 TCCACCGAATGTTGGTTTCC 58.388 50.000 0.00 0.00 37.72 3.13
3795 3950 0.239879 CCACCGAATGTTGGTTTCCG 59.760 55.000 0.00 0.00 37.72 4.30
3796 3951 0.948678 CACCGAATGTTGGTTTCCGT 59.051 50.000 0.00 0.00 37.72 4.69
3797 3952 2.144730 CACCGAATGTTGGTTTCCGTA 58.855 47.619 0.00 0.00 37.72 4.02
3798 3953 2.745281 CACCGAATGTTGGTTTCCGTAT 59.255 45.455 0.00 0.00 37.72 3.06
3799 3954 2.745281 ACCGAATGTTGGTTTCCGTATG 59.255 45.455 0.00 0.00 35.82 2.39
3800 3955 2.096819 CCGAATGTTGGTTTCCGTATGG 59.903 50.000 0.00 0.00 0.00 2.74
3801 3956 2.745281 CGAATGTTGGTTTCCGTATGGT 59.255 45.455 0.00 0.00 36.30 3.55
3802 3957 3.933955 CGAATGTTGGTTTCCGTATGGTA 59.066 43.478 0.00 0.00 36.30 3.25
3803 3958 4.573201 CGAATGTTGGTTTCCGTATGGTAT 59.427 41.667 0.00 0.00 36.30 2.73
3804 3959 5.065474 CGAATGTTGGTTTCCGTATGGTATT 59.935 40.000 0.00 0.00 36.30 1.89
3805 3960 6.445357 AATGTTGGTTTCCGTATGGTATTC 57.555 37.500 0.00 0.00 36.30 1.75
3806 3961 5.168647 TGTTGGTTTCCGTATGGTATTCT 57.831 39.130 0.00 0.00 36.30 2.40
3807 3962 5.180271 TGTTGGTTTCCGTATGGTATTCTC 58.820 41.667 0.00 0.00 36.30 2.87
3808 3963 4.411256 TGGTTTCCGTATGGTATTCTCC 57.589 45.455 0.00 0.00 36.30 3.71
3809 3964 3.135167 TGGTTTCCGTATGGTATTCTCCC 59.865 47.826 0.00 0.00 36.30 4.30
3810 3965 3.135167 GGTTTCCGTATGGTATTCTCCCA 59.865 47.826 0.00 0.00 36.30 4.37
3811 3966 4.124970 GTTTCCGTATGGTATTCTCCCAC 58.875 47.826 0.00 0.00 34.07 4.61
3812 3967 3.323774 TCCGTATGGTATTCTCCCACT 57.676 47.619 0.00 0.00 34.07 4.00
3813 3968 3.649843 TCCGTATGGTATTCTCCCACTT 58.350 45.455 0.00 0.00 34.07 3.16
3814 3969 3.640029 TCCGTATGGTATTCTCCCACTTC 59.360 47.826 0.00 0.00 34.07 3.01
3815 3970 3.244112 CCGTATGGTATTCTCCCACTTCC 60.244 52.174 0.00 0.00 34.07 3.46
3816 3971 3.386726 CGTATGGTATTCTCCCACTTCCA 59.613 47.826 0.00 0.00 34.07 3.53
3817 3972 4.141801 CGTATGGTATTCTCCCACTTCCAA 60.142 45.833 0.00 0.00 34.07 3.53
3818 3973 3.713826 TGGTATTCTCCCACTTCCAAC 57.286 47.619 0.00 0.00 0.00 3.77
3819 3974 2.983192 TGGTATTCTCCCACTTCCAACA 59.017 45.455 0.00 0.00 0.00 3.33
3836 3991 1.373748 CACGTCGACCCAAACGGAT 60.374 57.895 10.58 0.00 42.99 4.18
3861 4016 2.231478 TGTTTGTTCCGCTTTTTGTCCA 59.769 40.909 0.00 0.00 0.00 4.02
3868 4023 1.147473 CGCTTTTTGTCCATTTGGGC 58.853 50.000 0.00 0.00 41.09 5.36
3869 4024 1.270252 CGCTTTTTGTCCATTTGGGCT 60.270 47.619 2.43 0.00 41.34 5.19
3908 4063 2.261361 GTTTGGGTCGGCAATGCC 59.739 61.111 15.52 15.52 46.75 4.40
3921 4076 1.533129 GCAATGCCCGGACGTATTTTC 60.533 52.381 0.73 0.00 0.00 2.29
3924 4079 0.529833 TGCCCGGACGTATTTTCGTA 59.470 50.000 0.73 0.00 44.21 3.43
3925 4080 1.136695 TGCCCGGACGTATTTTCGTAT 59.863 47.619 0.73 0.00 44.21 3.06
3926 4081 1.523934 GCCCGGACGTATTTTCGTATG 59.476 52.381 0.73 0.00 44.21 2.39
3927 4082 2.813061 CCCGGACGTATTTTCGTATGT 58.187 47.619 0.73 0.00 44.21 2.29
3928 4083 2.536803 CCCGGACGTATTTTCGTATGTG 59.463 50.000 0.73 0.00 44.21 3.21
3929 4084 3.181397 CCGGACGTATTTTCGTATGTGT 58.819 45.455 0.00 0.00 44.21 3.72
3930 4085 3.613737 CCGGACGTATTTTCGTATGTGTT 59.386 43.478 0.00 0.00 44.21 3.32
3931 4086 4.091800 CCGGACGTATTTTCGTATGTGTTT 59.908 41.667 0.00 0.00 44.21 2.83
3932 4087 5.010749 CGGACGTATTTTCGTATGTGTTTG 58.989 41.667 0.00 0.00 44.21 2.93
3933 4088 5.318349 GGACGTATTTTCGTATGTGTTTGG 58.682 41.667 0.00 0.00 44.21 3.28
3934 4089 5.106987 GGACGTATTTTCGTATGTGTTTGGT 60.107 40.000 0.00 0.00 44.21 3.67
3935 4090 6.303021 ACGTATTTTCGTATGTGTTTGGTT 57.697 33.333 0.00 0.00 42.35 3.67
3936 4091 6.365050 ACGTATTTTCGTATGTGTTTGGTTC 58.635 36.000 0.00 0.00 42.35 3.62
3937 4092 5.502004 CGTATTTTCGTATGTGTTTGGTTCG 59.498 40.000 0.00 0.00 0.00 3.95
3938 4093 3.881780 TTTCGTATGTGTTTGGTTCGG 57.118 42.857 0.00 0.00 0.00 4.30
3939 4094 1.149987 TCGTATGTGTTTGGTTCGGC 58.850 50.000 0.00 0.00 0.00 5.54
3940 4095 0.869068 CGTATGTGTTTGGTTCGGCA 59.131 50.000 0.00 0.00 0.00 5.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
107 108 7.041107 GCTCTTTACAATAAATTTGCCATGGA 58.959 34.615 18.40 0.00 0.00 3.41
170 171 8.310382 TGCTACATAGTAAAATTTTGCCATGTT 58.690 29.630 27.65 16.84 0.00 2.71
171 172 7.835822 TGCTACATAGTAAAATTTTGCCATGT 58.164 30.769 26.44 26.44 0.00 3.21
172 173 8.757789 CATGCTACATAGTAAAATTTTGCCATG 58.242 33.333 20.02 20.02 0.00 3.66
173 174 7.927629 CCATGCTACATAGTAAAATTTTGCCAT 59.072 33.333 13.76 3.93 0.00 4.40
175 176 7.264947 ACCATGCTACATAGTAAAATTTTGCC 58.735 34.615 13.76 4.21 0.00 4.52
176 177 9.965824 ATACCATGCTACATAGTAAAATTTTGC 57.034 29.630 13.76 12.17 0.00 3.68
242 252 4.692228 GCAGAAATGGTTTGAGTTTTCCA 58.308 39.130 0.00 0.00 0.00 3.53
251 261 2.674954 TGCAATCGCAGAAATGGTTTG 58.325 42.857 0.00 0.00 45.36 2.93
394 479 6.415702 TCGAAGACGTTGTGACAAATAAAAG 58.584 36.000 0.00 0.00 40.69 2.27
407 492 4.278956 CCCCCTTCGAAGACGTTG 57.721 61.111 26.61 8.97 40.69 4.10
446 531 9.420118 TGACATAGGCAAAAACCTAATATTCAT 57.580 29.630 0.00 0.00 45.35 2.57
462 547 5.726980 AAAGCAGAAAAATGACATAGGCA 57.273 34.783 0.00 0.00 0.00 4.75
463 548 8.707938 ATAAAAAGCAGAAAAATGACATAGGC 57.292 30.769 0.00 0.00 0.00 3.93
542 628 4.446371 CAACTCATCCATCACCTCCTTAC 58.554 47.826 0.00 0.00 0.00 2.34
547 633 1.293924 CGCAACTCATCCATCACCTC 58.706 55.000 0.00 0.00 0.00 3.85
548 634 0.745845 GCGCAACTCATCCATCACCT 60.746 55.000 0.30 0.00 0.00 4.00
558 644 2.664851 CAACCCGAGCGCAACTCA 60.665 61.111 11.47 0.00 46.63 3.41
559 645 2.665185 ACAACCCGAGCGCAACTC 60.665 61.111 11.47 0.00 42.47 3.01
589 675 3.888930 GGATGGATCAGCCCGAATAAAAA 59.111 43.478 0.00 0.00 33.26 1.94
590 676 3.138283 AGGATGGATCAGCCCGAATAAAA 59.862 43.478 0.00 0.00 41.38 1.52
598 684 3.243724 AGTACTAAGGATGGATCAGCCC 58.756 50.000 0.00 0.00 41.38 5.19
651 737 9.692749 AGAGCGATTCGATTACTATTTTAATGA 57.307 29.630 10.88 0.00 0.00 2.57
665 751 9.275231 CGTAAACTAATATAAGAGCGATTCGAT 57.725 33.333 10.88 2.44 0.00 3.59
666 752 7.747799 CCGTAAACTAATATAAGAGCGATTCGA 59.252 37.037 10.88 0.00 0.00 3.71
667 753 7.747799 TCCGTAAACTAATATAAGAGCGATTCG 59.252 37.037 0.62 0.62 0.00 3.34
668 754 8.961294 TCCGTAAACTAATATAAGAGCGATTC 57.039 34.615 0.00 0.00 0.00 2.52
671 757 9.440773 TCTATCCGTAAACTAATATAAGAGCGA 57.559 33.333 0.00 0.00 0.00 4.93
672 758 9.705471 CTCTATCCGTAAACTAATATAAGAGCG 57.295 37.037 0.00 0.00 0.00 5.03
673 759 9.505995 GCTCTATCCGTAAACTAATATAAGAGC 57.494 37.037 0.00 0.00 35.52 4.09
676 762 9.570488 GGTGCTCTATCCGTAAACTAATATAAG 57.430 37.037 0.00 0.00 0.00 1.73
677 763 9.081204 TGGTGCTCTATCCGTAAACTAATATAA 57.919 33.333 0.00 0.00 0.00 0.98
678 764 8.640063 TGGTGCTCTATCCGTAAACTAATATA 57.360 34.615 0.00 0.00 0.00 0.86
679 765 7.534723 TGGTGCTCTATCCGTAAACTAATAT 57.465 36.000 0.00 0.00 0.00 1.28
680 766 6.964807 TGGTGCTCTATCCGTAAACTAATA 57.035 37.500 0.00 0.00 0.00 0.98
681 767 5.864418 TGGTGCTCTATCCGTAAACTAAT 57.136 39.130 0.00 0.00 0.00 1.73
682 768 5.664294 TTGGTGCTCTATCCGTAAACTAA 57.336 39.130 0.00 0.00 0.00 2.24
683 769 5.664294 TTTGGTGCTCTATCCGTAAACTA 57.336 39.130 0.00 0.00 0.00 2.24
684 770 4.546829 TTTGGTGCTCTATCCGTAAACT 57.453 40.909 0.00 0.00 0.00 2.66
685 771 6.913873 TTATTTGGTGCTCTATCCGTAAAC 57.086 37.500 0.00 0.00 0.00 2.01
686 772 7.042321 CGATTTATTTGGTGCTCTATCCGTAAA 60.042 37.037 0.00 0.00 0.00 2.01
687 773 6.422701 CGATTTATTTGGTGCTCTATCCGTAA 59.577 38.462 0.00 0.00 0.00 3.18
688 774 5.924254 CGATTTATTTGGTGCTCTATCCGTA 59.076 40.000 0.00 0.00 0.00 4.02
689 775 4.750098 CGATTTATTTGGTGCTCTATCCGT 59.250 41.667 0.00 0.00 0.00 4.69
690 776 4.750098 ACGATTTATTTGGTGCTCTATCCG 59.250 41.667 0.00 0.00 0.00 4.18
691 777 5.179555 GGACGATTTATTTGGTGCTCTATCC 59.820 44.000 0.00 0.00 0.00 2.59
692 778 5.107453 CGGACGATTTATTTGGTGCTCTATC 60.107 44.000 0.00 0.00 0.00 2.08
693 779 4.750098 CGGACGATTTATTTGGTGCTCTAT 59.250 41.667 0.00 0.00 0.00 1.98
694 780 4.116961 CGGACGATTTATTTGGTGCTCTA 58.883 43.478 0.00 0.00 0.00 2.43
695 781 2.936498 CGGACGATTTATTTGGTGCTCT 59.064 45.455 0.00 0.00 0.00 4.09
696 782 2.031683 CCGGACGATTTATTTGGTGCTC 59.968 50.000 0.00 0.00 0.00 4.26
697 783 2.014128 CCGGACGATTTATTTGGTGCT 58.986 47.619 0.00 0.00 0.00 4.40
699 785 4.269363 GTCTACCGGACGATTTATTTGGTG 59.731 45.833 9.46 0.00 35.07 4.17
715 801 0.108945 GGTCTGGAAACCGTCTACCG 60.109 60.000 0.00 0.00 0.00 4.02
719 805 0.680061 GTCAGGTCTGGAAACCGTCT 59.320 55.000 0.00 0.00 44.49 4.18
721 807 1.129058 AAGTCAGGTCTGGAAACCGT 58.871 50.000 0.00 0.00 44.49 4.83
722 808 1.512926 CAAGTCAGGTCTGGAAACCG 58.487 55.000 0.00 0.00 44.49 4.44
726 812 1.371183 CCGCAAGTCAGGTCTGGAA 59.629 57.895 0.00 0.00 0.00 3.53
727 813 3.059982 CCGCAAGTCAGGTCTGGA 58.940 61.111 0.00 0.00 0.00 3.86
728 814 2.743928 GCCGCAAGTCAGGTCTGG 60.744 66.667 0.00 0.00 0.00 3.86
729 815 0.957395 ATTGCCGCAAGTCAGGTCTG 60.957 55.000 12.16 0.00 0.00 3.51
730 816 0.250901 AATTGCCGCAAGTCAGGTCT 60.251 50.000 12.16 0.00 0.00 3.85
731 817 1.448985 TAATTGCCGCAAGTCAGGTC 58.551 50.000 9.72 0.00 0.00 3.85
732 818 2.017049 GATAATTGCCGCAAGTCAGGT 58.983 47.619 9.72 0.00 0.00 4.00
733 819 1.003545 CGATAATTGCCGCAAGTCAGG 60.004 52.381 9.72 0.00 0.00 3.86
734 820 1.003545 CCGATAATTGCCGCAAGTCAG 60.004 52.381 9.72 2.93 0.00 3.51
735 821 1.013596 CCGATAATTGCCGCAAGTCA 58.986 50.000 9.72 0.00 0.00 3.41
736 822 0.317020 GCCGATAATTGCCGCAAGTC 60.317 55.000 9.72 7.48 0.00 3.01
737 823 1.727467 GCCGATAATTGCCGCAAGT 59.273 52.632 12.16 11.72 0.00 3.16
738 824 1.369209 CGCCGATAATTGCCGCAAG 60.369 57.895 12.16 0.00 0.00 4.01
739 825 1.649390 AACGCCGATAATTGCCGCAA 61.649 50.000 8.55 8.55 0.00 4.85
740 826 2.042520 GAACGCCGATAATTGCCGCA 62.043 55.000 0.00 0.00 0.00 5.69
741 827 1.368850 GAACGCCGATAATTGCCGC 60.369 57.895 0.00 0.00 0.00 6.53
742 828 0.655733 AAGAACGCCGATAATTGCCG 59.344 50.000 0.00 0.00 0.00 5.69
743 829 4.483476 AATAAGAACGCCGATAATTGCC 57.517 40.909 0.00 0.00 0.00 4.52
744 830 6.806120 AAAAATAAGAACGCCGATAATTGC 57.194 33.333 0.00 0.00 0.00 3.56
750 836 8.856247 GTCAAAAATAAAAATAAGAACGCCGAT 58.144 29.630 0.00 0.00 0.00 4.18
751 837 7.861372 TGTCAAAAATAAAAATAAGAACGCCGA 59.139 29.630 0.00 0.00 0.00 5.54
752 838 7.998141 TGTCAAAAATAAAAATAAGAACGCCG 58.002 30.769 0.00 0.00 0.00 6.46
779 865 3.517901 TCACCGAAATTGATACACCCTCT 59.482 43.478 0.00 0.00 0.00 3.69
843 929 1.739049 GAGAGTGGATCTCGGGCAG 59.261 63.158 0.00 0.00 44.95 4.85
1052 1138 4.705507 GGGGAAGATCAAAGAAGGGTAAAC 59.294 45.833 0.00 0.00 0.00 2.01
1229 1315 1.474077 GCCAGATGCAACCAAACCTAG 59.526 52.381 0.00 0.00 40.77 3.02
1422 1508 7.184862 AGGAACAAAATTTCTCATGTATCCCT 58.815 34.615 12.97 9.08 0.00 4.20
1423 1509 7.410120 AGGAACAAAATTTCTCATGTATCCC 57.590 36.000 12.97 7.70 0.00 3.85
1468 1554 9.146984 TCAGTACTAACAGTAATGCACATAAAC 57.853 33.333 8.51 0.00 43.96 2.01
1492 1578 7.491372 GTCCAAATCGACATGTCTATAACTTCA 59.509 37.037 22.95 0.00 32.74 3.02
1618 1704 5.337330 CCAAGTTCCCGACTATGACTTTAGT 60.337 44.000 0.00 0.00 37.72 2.24
1658 1744 9.702494 ATTTGACATTTTCTTCATTTTCTCCTC 57.298 29.630 0.00 0.00 0.00 3.71
1696 1783 1.203001 TGGGAACAGCTTAACCCCTTG 60.203 52.381 14.02 0.00 41.44 3.61
1774 1863 4.322198 GCCAATTGCCATGGAAATATCGAT 60.322 41.667 18.91 2.16 40.56 3.59
1831 1920 9.896645 AGATTGAGTACACATTGTATGAAATCT 57.103 29.630 0.00 11.06 35.47 2.40
1834 1923 9.936759 TGTAGATTGAGTACACATTGTATGAAA 57.063 29.630 0.00 0.00 35.05 2.69
1835 1924 9.366216 GTGTAGATTGAGTACACATTGTATGAA 57.634 33.333 8.22 0.00 46.42 2.57
1836 1925 8.926715 GTGTAGATTGAGTACACATTGTATGA 57.073 34.615 8.22 0.00 46.42 2.15
1846 1935 9.850628 GTTATGTAACAGTGTAGATTGAGTACA 57.149 33.333 0.00 0.00 36.25 2.90
1963 2072 5.291178 CAAGACAATTGTTTTGCTGGATCA 58.709 37.500 23.91 0.00 34.19 2.92
2275 2384 5.350914 CAGGAAAACACAAATGCAAGTCAAA 59.649 36.000 0.00 0.00 0.00 2.69
2604 2714 1.224592 GGGCTTGTCGATGACCCAT 59.775 57.895 10.01 0.00 40.52 4.00
2754 2864 3.433031 CCTTGTACTCTGGGTTTGTGTCA 60.433 47.826 0.00 0.00 0.00 3.58
2775 2885 1.869767 CTTTCAGCTGATATGCGGTCC 59.130 52.381 19.04 0.00 38.13 4.46
2838 2948 2.703007 AGTCTTCCACAAAGAGCTCTGT 59.297 45.455 19.06 9.37 44.66 3.41
2931 3041 1.901833 TGCTGACATGGCTAGTTCTCA 59.098 47.619 0.00 0.00 0.00 3.27
2946 3056 2.730069 CGACAGTTTTGCATTTGCTGA 58.270 42.857 12.79 0.00 42.66 4.26
2972 3082 2.702478 TGAGGTAGGATCATCCAAGCAG 59.298 50.000 6.42 0.00 39.61 4.24
3006 3116 4.638421 AGAGAGAACCGACTTGATGACTAG 59.362 45.833 0.00 0.00 0.00 2.57
3023 3133 2.107366 TCGCAGAGAGAGAGAGAGAGA 58.893 52.381 0.00 0.00 0.00 3.10
3024 3134 2.602257 TCGCAGAGAGAGAGAGAGAG 57.398 55.000 0.00 0.00 0.00 3.20
3025 3135 2.170397 ACATCGCAGAGAGAGAGAGAGA 59.830 50.000 0.00 0.00 43.63 3.10
3026 3136 2.564771 ACATCGCAGAGAGAGAGAGAG 58.435 52.381 0.00 0.00 43.63 3.20
3027 3137 2.708216 ACATCGCAGAGAGAGAGAGA 57.292 50.000 0.00 0.00 43.63 3.10
3028 3138 3.876914 AGTAACATCGCAGAGAGAGAGAG 59.123 47.826 0.00 0.00 43.63 3.20
3080 3190 9.474920 TTTTACCAGAAACTCATGCATAAAAAG 57.525 29.630 0.00 0.00 0.00 2.27
3165 3277 5.163447 CGGATGGTAAACTCAAGGACATCTA 60.163 44.000 0.00 0.00 35.02 1.98
3191 3303 7.120579 GGTCATCTGGTAAAACAATGTATCACA 59.879 37.037 0.00 0.00 0.00 3.58
3329 3441 4.342378 TGTCAGCCTTCATCTGGAGTATAC 59.658 45.833 0.00 0.00 32.63 1.47
3334 3446 3.387374 AGTATGTCAGCCTTCATCTGGAG 59.613 47.826 0.00 0.00 32.63 3.86
3335 3447 3.378512 AGTATGTCAGCCTTCATCTGGA 58.621 45.455 0.00 0.00 32.63 3.86
3336 3448 3.494048 GGAGTATGTCAGCCTTCATCTGG 60.494 52.174 0.00 0.00 32.63 3.86
3339 3451 3.827008 TGGAGTATGTCAGCCTTCATC 57.173 47.619 0.00 0.00 0.00 2.92
3340 3452 3.776969 TCTTGGAGTATGTCAGCCTTCAT 59.223 43.478 0.00 0.00 0.00 2.57
3343 3455 4.472833 AGAATCTTGGAGTATGTCAGCCTT 59.527 41.667 0.00 0.00 0.00 4.35
3344 3456 4.036518 AGAATCTTGGAGTATGTCAGCCT 58.963 43.478 0.00 0.00 0.00 4.58
3345 3457 4.125703 CAGAATCTTGGAGTATGTCAGCC 58.874 47.826 0.00 0.00 0.00 4.85
3346 3458 4.764172 ACAGAATCTTGGAGTATGTCAGC 58.236 43.478 0.00 0.00 25.46 4.26
3349 3461 6.577103 TGATGACAGAATCTTGGAGTATGTC 58.423 40.000 13.37 13.37 45.12 3.06
3350 3462 6.550938 TGATGACAGAATCTTGGAGTATGT 57.449 37.500 0.00 0.00 34.85 2.29
3353 3465 5.248248 TGGTTGATGACAGAATCTTGGAGTA 59.752 40.000 0.00 0.00 0.00 2.59
3354 3466 4.042062 TGGTTGATGACAGAATCTTGGAGT 59.958 41.667 0.00 0.00 0.00 3.85
3355 3467 4.394300 GTGGTTGATGACAGAATCTTGGAG 59.606 45.833 0.00 0.00 0.00 3.86
3356 3468 4.202451 TGTGGTTGATGACAGAATCTTGGA 60.202 41.667 0.00 0.00 0.00 3.53
3357 3469 4.074259 TGTGGTTGATGACAGAATCTTGG 58.926 43.478 0.00 0.00 0.00 3.61
3358 3470 5.694231 TTGTGGTTGATGACAGAATCTTG 57.306 39.130 0.00 0.00 0.00 3.02
3359 3471 6.906157 ATTTGTGGTTGATGACAGAATCTT 57.094 33.333 0.00 0.00 0.00 2.40
3360 3472 6.718454 AGAATTTGTGGTTGATGACAGAATCT 59.282 34.615 0.00 0.00 0.00 2.40
3361 3473 6.805271 CAGAATTTGTGGTTGATGACAGAATC 59.195 38.462 0.00 0.00 0.00 2.52
3362 3474 6.294899 CCAGAATTTGTGGTTGATGACAGAAT 60.295 38.462 4.42 0.00 0.00 2.40
3363 3475 5.009911 CCAGAATTTGTGGTTGATGACAGAA 59.990 40.000 4.42 0.00 0.00 3.02
3364 3476 4.520111 CCAGAATTTGTGGTTGATGACAGA 59.480 41.667 4.42 0.00 0.00 3.41
3365 3477 4.801891 CCAGAATTTGTGGTTGATGACAG 58.198 43.478 4.42 0.00 0.00 3.51
3366 3478 3.005684 GCCAGAATTTGTGGTTGATGACA 59.994 43.478 13.59 0.00 37.40 3.58
3393 3505 4.679662 GTTAGTTTCTGCTACCTATGCGA 58.320 43.478 0.00 0.00 0.00 5.10
3395 3507 3.245519 GCGTTAGTTTCTGCTACCTATGC 59.754 47.826 0.00 0.00 0.00 3.14
3442 3597 0.944386 CCCGTGTTGGAGTTGTTCTG 59.056 55.000 0.00 0.00 42.00 3.02
3446 3601 1.450211 CTCCCCGTGTTGGAGTTGT 59.550 57.895 0.00 0.00 43.68 3.32
3457 3612 3.165087 TCCGTATGATATTCTCCCCGT 57.835 47.619 0.00 0.00 0.00 5.28
3458 3613 4.243270 GTTTCCGTATGATATTCTCCCCG 58.757 47.826 0.00 0.00 0.00 5.73
3459 3614 4.041198 TGGTTTCCGTATGATATTCTCCCC 59.959 45.833 0.00 0.00 0.00 4.81
3460 3615 5.223449 TGGTTTCCGTATGATATTCTCCC 57.777 43.478 0.00 0.00 0.00 4.30
3461 3616 9.449719 AATATTGGTTTCCGTATGATATTCTCC 57.550 33.333 0.00 0.00 0.00 3.71
3467 3622 9.785982 TCATTGAATATTGGTTTCCGTATGATA 57.214 29.630 0.00 0.00 0.00 2.15
3468 3623 8.690203 TCATTGAATATTGGTTTCCGTATGAT 57.310 30.769 0.00 0.00 0.00 2.45
3469 3624 8.512966 TTCATTGAATATTGGTTTCCGTATGA 57.487 30.769 0.00 0.00 0.00 2.15
3470 3625 9.579768 TTTTCATTGAATATTGGTTTCCGTATG 57.420 29.630 0.00 0.00 0.00 2.39
3473 3628 9.500785 AAATTTTCATTGAATATTGGTTTCCGT 57.499 25.926 13.55 0.00 0.00 4.69
3474 3629 9.971744 GAAATTTTCATTGAATATTGGTTTCCG 57.028 29.630 13.55 0.00 0.00 4.30
3475 3630 9.971744 CGAAATTTTCATTGAATATTGGTTTCC 57.028 29.630 13.55 2.71 0.00 3.13
3478 3633 9.703892 TCACGAAATTTTCATTGAATATTGGTT 57.296 25.926 13.55 1.83 0.00 3.67
3479 3634 9.703892 TTCACGAAATTTTCATTGAATATTGGT 57.296 25.926 13.55 11.99 30.55 3.67
3537 3692 8.429237 TCACCTTATTAACATCCCACATTTTT 57.571 30.769 0.00 0.00 0.00 1.94
3538 3693 8.477256 CATCACCTTATTAACATCCCACATTTT 58.523 33.333 0.00 0.00 0.00 1.82
3539 3694 7.619302 ACATCACCTTATTAACATCCCACATTT 59.381 33.333 0.00 0.00 0.00 2.32
3540 3695 7.125391 ACATCACCTTATTAACATCCCACATT 58.875 34.615 0.00 0.00 0.00 2.71
3541 3696 6.672593 ACATCACCTTATTAACATCCCACAT 58.327 36.000 0.00 0.00 0.00 3.21
3542 3697 6.073447 ACATCACCTTATTAACATCCCACA 57.927 37.500 0.00 0.00 0.00 4.17
3543 3698 7.404671 AAACATCACCTTATTAACATCCCAC 57.595 36.000 0.00 0.00 0.00 4.61
3544 3699 9.707957 ATAAAACATCACCTTATTAACATCCCA 57.292 29.630 0.00 0.00 0.00 4.37
3584 3739 8.304596 ACATCTCGTAATGTTTCTCAACTAGAA 58.695 33.333 0.00 0.00 42.62 2.10
3585 3740 7.755373 CACATCTCGTAATGTTTCTCAACTAGA 59.245 37.037 0.00 0.00 37.78 2.43
3586 3741 7.009631 CCACATCTCGTAATGTTTCTCAACTAG 59.990 40.741 3.24 0.00 37.78 2.57
3587 3742 6.811665 CCACATCTCGTAATGTTTCTCAACTA 59.188 38.462 3.24 0.00 37.78 2.24
3588 3743 5.639506 CCACATCTCGTAATGTTTCTCAACT 59.360 40.000 3.24 0.00 37.78 3.16
3589 3744 5.671329 GCCACATCTCGTAATGTTTCTCAAC 60.671 44.000 3.24 0.00 37.78 3.18
3590 3745 4.391830 GCCACATCTCGTAATGTTTCTCAA 59.608 41.667 3.24 0.00 37.78 3.02
3591 3746 3.932710 GCCACATCTCGTAATGTTTCTCA 59.067 43.478 3.24 0.00 37.78 3.27
3592 3747 3.932710 TGCCACATCTCGTAATGTTTCTC 59.067 43.478 3.24 0.00 37.78 2.87
3593 3748 3.684788 GTGCCACATCTCGTAATGTTTCT 59.315 43.478 3.24 0.00 37.78 2.52
3594 3749 3.684788 AGTGCCACATCTCGTAATGTTTC 59.315 43.478 0.00 0.61 37.78 2.78
3595 3750 3.674997 AGTGCCACATCTCGTAATGTTT 58.325 40.909 0.00 0.00 37.78 2.83
3596 3751 3.334583 AGTGCCACATCTCGTAATGTT 57.665 42.857 0.00 0.00 37.78 2.71
3597 3752 4.672587 ATAGTGCCACATCTCGTAATGT 57.327 40.909 0.00 0.53 40.49 2.71
3598 3753 5.991328 AAATAGTGCCACATCTCGTAATG 57.009 39.130 0.00 0.00 0.00 1.90
3599 3754 7.011109 GTGTTAAATAGTGCCACATCTCGTAAT 59.989 37.037 0.00 0.00 0.00 1.89
3600 3755 6.311935 GTGTTAAATAGTGCCACATCTCGTAA 59.688 38.462 0.00 0.00 0.00 3.18
3601 3756 5.808540 GTGTTAAATAGTGCCACATCTCGTA 59.191 40.000 0.00 0.00 0.00 3.43
3602 3757 4.630069 GTGTTAAATAGTGCCACATCTCGT 59.370 41.667 0.00 0.00 0.00 4.18
3603 3758 4.870426 AGTGTTAAATAGTGCCACATCTCG 59.130 41.667 0.00 0.00 0.00 4.04
3604 3759 5.874810 TCAGTGTTAAATAGTGCCACATCTC 59.125 40.000 0.00 0.00 0.00 2.75
3605 3760 5.804639 TCAGTGTTAAATAGTGCCACATCT 58.195 37.500 0.00 0.00 0.00 2.90
3606 3761 6.683974 ATCAGTGTTAAATAGTGCCACATC 57.316 37.500 0.00 0.00 0.00 3.06
3607 3762 7.466746 AAATCAGTGTTAAATAGTGCCACAT 57.533 32.000 0.00 0.00 0.00 3.21
3608 3763 6.892658 AAATCAGTGTTAAATAGTGCCACA 57.107 33.333 0.00 0.00 0.00 4.17
3609 3764 7.145323 ACAAAATCAGTGTTAAATAGTGCCAC 58.855 34.615 0.00 0.00 0.00 5.01
3610 3765 7.230510 AGACAAAATCAGTGTTAAATAGTGCCA 59.769 33.333 0.00 0.00 0.00 4.92
3611 3766 7.593825 AGACAAAATCAGTGTTAAATAGTGCC 58.406 34.615 0.00 0.00 0.00 5.01
3612 3767 9.463443 AAAGACAAAATCAGTGTTAAATAGTGC 57.537 29.630 0.00 0.00 0.00 4.40
3620 3775 9.677567 GCTATGAAAAAGACAAAATCAGTGTTA 57.322 29.630 0.00 0.00 0.00 2.41
3621 3776 8.416329 AGCTATGAAAAAGACAAAATCAGTGTT 58.584 29.630 0.00 0.00 0.00 3.32
3622 3777 7.945134 AGCTATGAAAAAGACAAAATCAGTGT 58.055 30.769 0.00 0.00 0.00 3.55
3623 3778 8.077991 TGAGCTATGAAAAAGACAAAATCAGTG 58.922 33.333 0.00 0.00 0.00 3.66
3624 3779 8.078596 GTGAGCTATGAAAAAGACAAAATCAGT 58.921 33.333 0.00 0.00 0.00 3.41
3625 3780 8.077991 TGTGAGCTATGAAAAAGACAAAATCAG 58.922 33.333 0.00 0.00 0.00 2.90
3626 3781 7.939782 TGTGAGCTATGAAAAAGACAAAATCA 58.060 30.769 0.00 0.00 0.00 2.57
3627 3782 8.976986 ATGTGAGCTATGAAAAAGACAAAATC 57.023 30.769 0.00 0.00 0.00 2.17
3628 3783 8.800332 AGATGTGAGCTATGAAAAAGACAAAAT 58.200 29.630 0.00 0.00 0.00 1.82
3629 3784 8.169977 AGATGTGAGCTATGAAAAAGACAAAA 57.830 30.769 0.00 0.00 0.00 2.44
3630 3785 7.360353 CGAGATGTGAGCTATGAAAAAGACAAA 60.360 37.037 0.00 0.00 0.00 2.83
3631 3786 6.091305 CGAGATGTGAGCTATGAAAAAGACAA 59.909 38.462 0.00 0.00 0.00 3.18
3632 3787 5.578336 CGAGATGTGAGCTATGAAAAAGACA 59.422 40.000 0.00 0.00 0.00 3.41
3633 3788 5.578727 ACGAGATGTGAGCTATGAAAAAGAC 59.421 40.000 0.00 0.00 0.00 3.01
3634 3789 5.724328 ACGAGATGTGAGCTATGAAAAAGA 58.276 37.500 0.00 0.00 0.00 2.52
3635 3790 7.525688 TTACGAGATGTGAGCTATGAAAAAG 57.474 36.000 0.00 0.00 0.00 2.27
3636 3791 7.549134 ACATTACGAGATGTGAGCTATGAAAAA 59.451 33.333 7.44 0.00 38.75 1.94
3637 3792 7.041721 ACATTACGAGATGTGAGCTATGAAAA 58.958 34.615 7.44 0.00 38.75 2.29
3638 3793 6.573434 ACATTACGAGATGTGAGCTATGAAA 58.427 36.000 7.44 0.00 38.75 2.69
3639 3794 6.149129 ACATTACGAGATGTGAGCTATGAA 57.851 37.500 7.44 0.00 38.75 2.57
3640 3795 5.774498 ACATTACGAGATGTGAGCTATGA 57.226 39.130 7.44 0.00 38.75 2.15
3649 3804 8.373048 TCAAGTTAAAACACATTACGAGATGT 57.627 30.769 0.00 0.00 40.76 3.06
3650 3805 9.658475 TTTCAAGTTAAAACACATTACGAGATG 57.342 29.630 0.00 0.00 0.00 2.90
3689 3844 5.414765 GGACGTTAAGAGGATGATGGTTTTT 59.585 40.000 0.00 0.00 0.00 1.94
3690 3845 4.941873 GGACGTTAAGAGGATGATGGTTTT 59.058 41.667 0.00 0.00 0.00 2.43
3691 3846 4.225267 AGGACGTTAAGAGGATGATGGTTT 59.775 41.667 0.00 0.00 0.00 3.27
3692 3847 3.775316 AGGACGTTAAGAGGATGATGGTT 59.225 43.478 0.00 0.00 0.00 3.67
3693 3848 3.375699 AGGACGTTAAGAGGATGATGGT 58.624 45.455 0.00 0.00 0.00 3.55
3694 3849 4.341235 TGTAGGACGTTAAGAGGATGATGG 59.659 45.833 0.00 0.00 0.00 3.51
3695 3850 5.515797 TGTAGGACGTTAAGAGGATGATG 57.484 43.478 0.00 0.00 0.00 3.07
3696 3851 6.732896 AATGTAGGACGTTAAGAGGATGAT 57.267 37.500 0.00 0.00 0.00 2.45
3697 3852 6.540438 AAATGTAGGACGTTAAGAGGATGA 57.460 37.500 0.00 0.00 0.00 2.92
3698 3853 7.611213 AAAAATGTAGGACGTTAAGAGGATG 57.389 36.000 0.00 0.00 0.00 3.51
3733 3888 9.284594 CGAGAAAAAGATGTTTTAAAGTGTCAA 57.715 29.630 0.37 0.00 34.64 3.18
3734 3889 8.455682 ACGAGAAAAAGATGTTTTAAAGTGTCA 58.544 29.630 0.37 0.00 34.64 3.58
3735 3890 8.734030 CACGAGAAAAAGATGTTTTAAAGTGTC 58.266 33.333 0.37 0.00 34.64 3.67
3736 3891 7.700656 CCACGAGAAAAAGATGTTTTAAAGTGT 59.299 33.333 16.68 6.29 34.64 3.55
3737 3892 7.700656 ACCACGAGAAAAAGATGTTTTAAAGTG 59.299 33.333 0.37 9.16 34.64 3.16
3738 3893 7.768240 ACCACGAGAAAAAGATGTTTTAAAGT 58.232 30.769 0.37 0.00 34.64 2.66
3739 3894 8.628882 AACCACGAGAAAAAGATGTTTTAAAG 57.371 30.769 0.37 0.00 34.64 1.85
3740 3895 8.989653 AAACCACGAGAAAAAGATGTTTTAAA 57.010 26.923 0.37 0.00 34.64 1.52
3741 3896 8.989653 AAAACCACGAGAAAAAGATGTTTTAA 57.010 26.923 0.37 0.00 34.64 1.52
3742 3897 8.989653 AAAAACCACGAGAAAAAGATGTTTTA 57.010 26.923 0.37 0.00 34.64 1.52
3743 3898 7.899178 AAAAACCACGAGAAAAAGATGTTTT 57.101 28.000 0.00 0.00 37.48 2.43
3744 3899 9.244799 GATAAAAACCACGAGAAAAAGATGTTT 57.755 29.630 0.00 0.00 0.00 2.83
3745 3900 7.589954 CGATAAAAACCACGAGAAAAAGATGTT 59.410 33.333 0.00 0.00 0.00 2.71
3746 3901 7.075741 CGATAAAAACCACGAGAAAAAGATGT 58.924 34.615 0.00 0.00 0.00 3.06
3747 3902 6.523201 CCGATAAAAACCACGAGAAAAAGATG 59.477 38.462 0.00 0.00 0.00 2.90
3748 3903 6.206048 ACCGATAAAAACCACGAGAAAAAGAT 59.794 34.615 0.00 0.00 0.00 2.40
3749 3904 5.528320 ACCGATAAAAACCACGAGAAAAAGA 59.472 36.000 0.00 0.00 0.00 2.52
3750 3905 5.754778 ACCGATAAAAACCACGAGAAAAAG 58.245 37.500 0.00 0.00 0.00 2.27
3751 3906 5.754543 ACCGATAAAAACCACGAGAAAAA 57.245 34.783 0.00 0.00 0.00 1.94
3752 3907 5.754543 AACCGATAAAAACCACGAGAAAA 57.245 34.783 0.00 0.00 0.00 2.29
3753 3908 5.277925 GGAAACCGATAAAAACCACGAGAAA 60.278 40.000 0.00 0.00 0.00 2.52
3754 3909 4.213906 GGAAACCGATAAAAACCACGAGAA 59.786 41.667 0.00 0.00 0.00 2.87
3755 3910 3.747529 GGAAACCGATAAAAACCACGAGA 59.252 43.478 0.00 0.00 0.00 4.04
3756 3911 3.499157 TGGAAACCGATAAAAACCACGAG 59.501 43.478 0.00 0.00 0.00 4.18
3757 3912 3.250521 GTGGAAACCGATAAAAACCACGA 59.749 43.478 0.00 0.00 37.24 4.35
3758 3913 3.557508 GTGGAAACCGATAAAAACCACG 58.442 45.455 0.00 0.00 37.24 4.94
3759 3914 3.904571 GGTGGAAACCGATAAAAACCAC 58.095 45.455 0.00 0.00 43.46 4.16
3771 3926 1.324383 ACCAACATTCGGTGGAAACC 58.676 50.000 2.97 0.00 34.69 3.27
3772 3927 3.377439 GAAACCAACATTCGGTGGAAAC 58.623 45.455 2.97 0.00 36.67 2.78
3773 3928 2.362717 GGAAACCAACATTCGGTGGAAA 59.637 45.455 2.97 0.00 36.67 3.13
3774 3929 1.957877 GGAAACCAACATTCGGTGGAA 59.042 47.619 2.97 0.00 36.67 3.53
3775 3930 1.611519 GGAAACCAACATTCGGTGGA 58.388 50.000 2.97 0.00 36.67 4.02
3776 3931 0.239879 CGGAAACCAACATTCGGTGG 59.760 55.000 0.00 0.00 36.67 4.61
3777 3932 0.948678 ACGGAAACCAACATTCGGTG 59.051 50.000 0.00 0.00 38.44 4.94
3778 3933 2.547299 TACGGAAACCAACATTCGGT 57.453 45.000 5.12 5.12 41.41 4.69
3779 3934 2.096819 CCATACGGAAACCAACATTCGG 59.903 50.000 0.00 0.00 34.42 4.30
3780 3935 2.745281 ACCATACGGAAACCAACATTCG 59.255 45.455 0.00 0.00 35.59 3.34
3781 3936 6.317893 AGAATACCATACGGAAACCAACATTC 59.682 38.462 0.00 0.00 35.59 2.67
3782 3937 6.184789 AGAATACCATACGGAAACCAACATT 58.815 36.000 0.00 0.00 35.59 2.71
3783 3938 5.751586 AGAATACCATACGGAAACCAACAT 58.248 37.500 0.00 0.00 35.59 2.71
3784 3939 5.168647 AGAATACCATACGGAAACCAACA 57.831 39.130 0.00 0.00 35.59 3.33
3785 3940 4.573607 GGAGAATACCATACGGAAACCAAC 59.426 45.833 0.00 0.00 35.59 3.77
3786 3941 4.384427 GGGAGAATACCATACGGAAACCAA 60.384 45.833 0.00 0.00 35.59 3.67
3787 3942 3.135167 GGGAGAATACCATACGGAAACCA 59.865 47.826 0.00 0.00 35.59 3.67
3788 3943 3.135167 TGGGAGAATACCATACGGAAACC 59.865 47.826 0.00 0.00 35.59 3.27
3789 3944 4.124970 GTGGGAGAATACCATACGGAAAC 58.875 47.826 0.00 0.00 40.70 2.78
3790 3945 4.035112 AGTGGGAGAATACCATACGGAAA 58.965 43.478 0.00 0.00 40.70 3.13
3791 3946 3.649843 AGTGGGAGAATACCATACGGAA 58.350 45.455 0.00 0.00 40.70 4.30
3792 3947 3.323774 AGTGGGAGAATACCATACGGA 57.676 47.619 0.00 0.00 40.70 4.69
3793 3948 3.244112 GGAAGTGGGAGAATACCATACGG 60.244 52.174 0.00 0.00 40.70 4.02
3794 3949 3.386726 TGGAAGTGGGAGAATACCATACG 59.613 47.826 0.00 0.00 40.70 3.06
3795 3950 5.123936 GTTGGAAGTGGGAGAATACCATAC 58.876 45.833 0.00 0.00 40.70 2.39
3796 3951 4.785914 TGTTGGAAGTGGGAGAATACCATA 59.214 41.667 0.00 0.00 40.70 2.74
3797 3952 3.591527 TGTTGGAAGTGGGAGAATACCAT 59.408 43.478 0.00 0.00 40.70 3.55
3798 3953 2.983192 TGTTGGAAGTGGGAGAATACCA 59.017 45.455 0.00 0.00 35.14 3.25
3799 3954 3.344515 GTGTTGGAAGTGGGAGAATACC 58.655 50.000 0.00 0.00 0.00 2.73
3800 3955 3.000727 CGTGTTGGAAGTGGGAGAATAC 58.999 50.000 0.00 0.00 0.00 1.89
3801 3956 2.635915 ACGTGTTGGAAGTGGGAGAATA 59.364 45.455 0.00 0.00 0.00 1.75
3802 3957 1.420138 ACGTGTTGGAAGTGGGAGAAT 59.580 47.619 0.00 0.00 0.00 2.40
3803 3958 0.834612 ACGTGTTGGAAGTGGGAGAA 59.165 50.000 0.00 0.00 0.00 2.87
3804 3959 0.391597 GACGTGTTGGAAGTGGGAGA 59.608 55.000 0.00 0.00 0.00 3.71
3805 3960 0.944311 CGACGTGTTGGAAGTGGGAG 60.944 60.000 0.00 0.00 0.00 4.30
3806 3961 1.068417 CGACGTGTTGGAAGTGGGA 59.932 57.895 0.00 0.00 0.00 4.37
3807 3962 1.068417 TCGACGTGTTGGAAGTGGG 59.932 57.895 0.00 0.00 0.00 4.61
3808 3963 1.219522 GGTCGACGTGTTGGAAGTGG 61.220 60.000 9.92 0.00 0.00 4.00
3809 3964 1.219522 GGGTCGACGTGTTGGAAGTG 61.220 60.000 9.92 0.00 0.00 3.16
3810 3965 1.068585 GGGTCGACGTGTTGGAAGT 59.931 57.895 9.92 0.00 0.00 3.01
3811 3966 0.531090 TTGGGTCGACGTGTTGGAAG 60.531 55.000 9.92 0.00 0.00 3.46
3812 3967 0.107800 TTTGGGTCGACGTGTTGGAA 60.108 50.000 9.92 0.00 0.00 3.53
3813 3968 0.810823 GTTTGGGTCGACGTGTTGGA 60.811 55.000 9.92 0.00 0.00 3.53
3814 3969 1.644913 GTTTGGGTCGACGTGTTGG 59.355 57.895 9.92 0.00 0.00 3.77
3815 3970 1.274476 CGTTTGGGTCGACGTGTTG 59.726 57.895 9.92 0.00 34.75 3.33
3816 3971 1.884004 CCGTTTGGGTCGACGTGTT 60.884 57.895 9.92 0.00 37.56 3.32
3817 3972 2.091102 ATCCGTTTGGGTCGACGTGT 62.091 55.000 9.92 0.00 37.56 4.49
3818 3973 1.373748 ATCCGTTTGGGTCGACGTG 60.374 57.895 9.92 0.00 37.56 4.49
3819 3974 1.373748 CATCCGTTTGGGTCGACGT 60.374 57.895 9.92 0.00 37.56 4.34
3861 4016 1.978617 CGGACAAGCCAGCCCAAAT 60.979 57.895 0.00 0.00 35.94 2.32
3908 4063 3.181397 ACACATACGAAAATACGTCCGG 58.819 45.455 0.00 0.00 45.32 5.14
3915 4070 5.617308 GCCGAACCAAACACATACGAAAATA 60.617 40.000 0.00 0.00 0.00 1.40
3921 4076 0.869068 TGCCGAACCAAACACATACG 59.131 50.000 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.