>input_sequence_40656
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------ATGGCCTCGCCGGCGCCGGTTCCGGCCTCGCCGGG
GTCCTCCTCTCAGGTCCGTTTACCCTTCTTTGATCTTCCCCGCCTTGGTTGATTAATGTTTCCGCAGCTTTAATTTCGTC
CCCTATGCAATCTCCTTGGTGACGGACTGATGGTTATGTAATGCTATGAGGTCGATTTCGGCGTGGTGGGCGCTGGTGTA
ATGCTCAGAGGTTGATTTCGTTGCTATTGTGGGGCTAGGTTTGGTTGCATCTGGCTGCTTTGTTTGGTAGGGATGGGTGG
ATTGTGATTAGTATCTACATGCCGGATCCCTGAACAAAAAGGTTGAGCCTTGTTCTAGAAGAACATCAATGTTGGCTGCA
TATTTGTTTGGATGGCCTCAGAATAGGATTTGGTGATCGATCCTGCACACATGCCTTTGGTTCGGGAAGGGATACATGAG
AAATTTTGTTCCTTTATTCATCTGTTAGGCTGGGTTTATGTGCATTACTGTTAGTACTGAAGTTATAGACATGTCGATTT
GGACTATTGTCTATATATGGTGAGTGCAGGTATGTGAAGACTGTTTAACTAGTTACAGGGAGGTTAGGAGCTTCAAACAT
CAACAGATGATTGTTGGTTATTCACTAAAGTCATAGTCGGGAACTTGGAATCAGGAGAATATGGAGGAGAAAATGAAGA-
AAATGTCAAATTTATCCAATTAC--AAGGGGTTAAGCTGTTCCCATCTCCTGTCAATTAAGCTAATTGATATAGAATTTA
GATCAGTGTAAGCTTGTTATTGATCGATATTTCCATGGCAATTGGCAATGCAGCAGTGTTAACCTATTTGCGGTTCTTAA
GATTTCATACAATGTGTA--------------------CTCAATCTACACTGTTACATAACTAACAATAGTGATTAATGG
GTCCAAAATAAAAGTTGTTTTTGTTTTTGCTGTATATCCCAGTAATATAATGGAACACAATTATGGCAACTTGATCCAGC
AAAACAATTGTCTTGGCCAATCTCCTCTTTAGGCTCTGTTGAGGACAACAGTATAAGAAATAGCTGTGTTGTTGTGACAT
TGTTTAACCAAAGACAACTGCCAGCATGGAAAGCAAATGTATTGTGCAAACCATTAGATATTTCTTTTGTATTCATGTTT
ATAATCTGGAATGGCTGTGCATTTTTCTTTAGATTGTAGGAATGGTTGTGTTAGATGTGTTCAGGCTTGCGCAGTTTGCA
AACACCACCTTTTGCACTATCTACTAATCATCCTACAGGTAGTAGGGAGAGTGGAAAAGGTTGTTT-GACTTGCATTTGT
GTTTTCCTGATAAGAGTTAAATTTCATGTTTTCAAATTGAAATGCTTACTTCAGATAACTTGCTTGCCTTGCCTGATATA
ATAAAATACTAAAAAGAAACCTTCTGATGTTGGCAGAAAAAACGAGGTGCAACGGAATCAATTGGCCTGTATGCTGTCCA
GTGTTGTGAATGTCATAAATGGCGTACAGTTTCAACGAAAGATGAATTTGAGACAATTCGTGAGAACTTCACTGAAGACC
CATGGTTCTGCAGTAAAAGACCTGAGTGCTCGTGTGAAGACCCTCCAGACATTGAGTACGACAGCAGCCGCATATGGGTC
ATCGACAAGCCCAACATACCAAAGCCTCCGCCCAAGACCGAGAGACTTGTGATCATGAGAGGTGATCTGTCTAAAATGGA
CATCTACTATGTCCTGCCAAACGGGAAGCGTGCAAGGGGCATCGGGGACGTGCAGAAGTTCCTTGACACAAACCCAGAGT
ACAAGGACCGCATATCAGCTGAAAGCTTCAGTTTTACGGTGCCCAAGATTGTTGAGGAGACCGTTTCACAGAGCTCTTTG
TGGAAGACTAAAAAGGCTAAAAAGCAGGACAAGATAAATGCTTCAAGCAGCAAGAAGGACAAGGCAAATGCTTCAAGCAG
TGAGAACTAG----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------
>chr1A_1_TraesCS1A01G253000
TTACTTTATTTCCATGGCAATATTACTCTATTTTTGCCATGACAAAATTTACTCCATTTTTTGCTATCACATACTTTTAA
TGATATGGCAAATTTTACTTTATTTTTTCCATGGCAAATTTATTGTAAAGAGCATGGCAATTTTAATTTAAATATGATGC
CAAGTTTACAAACATGGCAAAA---------TTTTACTATGTAGCATGGTATATACTTGTGTTCACATGGCAATTTTTAA
TTTATTTTCCATGGAAAACTCAAACCATTTCTGCGATTGCAAAATTTAATCCATTTTTT---------------------
-----------------------------------------------------GCCATGGCAAAATCTACTCCATTTTTG
CCATGGCAAGAATGCTTTTATTCACATGGCAAATTTTCATTTATTTTGCCATGT-ATTTTTTCTTTTTAAATACTTGGCT
TTTATTTGTCACAACGTCTTCGAAGGGGGGTTTTCCGGATCGAACGTTCGATGAATATTAGGTTTTTGCCTATGTCATTT
TTCTGCTTTTTATAGATGATGACATTTTTTGGTACTGCTTTTATTTTTTCGCTT-TTTACAAGGCATGTAAGGAGGTGAT
GGATGAGTTGCGCTCGGGTTGTGTGTTTTTTTCATTTTTATTCGGGCTGATCCATCCTTAGTACTTCTTCTGTAAATTAA
TATAAAAGCATTTAGATCATTAAAATAGTAATCGAATCGCTCTTATATTAGTTTACGGATAGAGCACCAAATAAATCGTC
CGGTAGACGGTTTCCAGACCTGACTTGCGGCAATTATCGGCGTTCTTATTTTTATTTTTGACATAGAGGGTGTATCAATT
TCGGTGAGCATACCGTGGACGATCCTGTCCGTATATCCCCGTAACCACCTGCCCGAGATCCACTCTCCCCACTTCCGTCC
CCATCCGGACGGCCGACCTTGGTTCCGTCCTCTCGCATCCGCCCGCCTACTACCGGCGCCGTCGCCGGTGACCTCTCCAG
CGGGGCGCCTCCGAGTTCCCGACGCAGGCCACCTCACTGTCGAACATGGCCTCGCCGGCGCCGGTTCCGGCCTCGCCGGG
GTCCTCCTCTCAGGTCCGTTTACCCTTCTTTGATCTTCCCCGCCTTGGTTGATTAATGTTTCCGCAGCTTTAATTTCGTC
CCCTATGCAATCTCCTTGGTGACGGACTGATGGTTATGTAATGCTATGAGGTCGATTTCGGCGTGGTGGGCGCTGGTGTA
ATGCTCAGAGGTTGATTTCGTTGCTATTGTGGGGCTAGGTTTGGTTGCATCTGGCTGCTTTGTTTGGTAGGGATGGGTGG
ATTGTGATTAGTATCTACATGCCGGATCCCTGAACAAAAAGGTTGAGCCTTGTTCTAGAAGAACATCAATGTTGGCTGCA
TATTTGTTTGGATGGCCTCAGAATAGGATTTGGTGATCGATCCTGCACACATGCCTTTGGTTCGGGAAGGGATACATGAG
AAATTTTGTTCCTTTATTCATCTGTTAGGCTGGGTTTATGTGCATTACTGTTAGTACTGAAGTTATAGACATGTCGATTT
GGACTATTGTCTATATATGGTGAGTGCAGGTATGTGAAGACTGTTTAACTAGTTACAGGGAGGTTAGGAGCTTCAAACAT
CAACAGATGATTGTTGGTTATTCACTAAAGTCATAGTCGGGAACTTGGAATCAGGAGAATATGGAGGAGAAAATGAAGA-
AAATGTCAAATTTATCCAATTAC--AAGGGGTTAAGCTGTTCCCATCTCCTGTCAATTAAGCTAATTGATATAGAATTTA
GATCAGTGTAAGCTTGTTATTGATCGATATTTCCATGGCAATTGGCAATGCAGCAGTGTTAACCTATTTGCGGTTCTTAA
GATTTCATACAATGTGTA--------------------CTCAATCTACACTGTTACATAACTAACAATAGTGATTAATGG
GTCCAAAATAAAAGTTGTTTTTGTTTTTGCTGTATATCCCAGTAATATAATGGAACACAATTATGGCAACTTGATCCAGC
AAAACAATTGTCTTGGCCAATCTCCTCTTTAGGCTCTGTTGAGGACAACAGTATAAGAAATAGCTGTGTTGTTGTGACAT
TGTTTAACCAAAGACAACTGCCAGCATGGAAAGCAAATGTATTGTGCAAACCATTAGATATTTCTTTTGTATTCATGTTT
ATAATCTGGAATGGCTGTGCATTTTTCTTTAGATTGTAGGAATGGTTGTGTTAGATGTGTTCAGGCTTGCGCAGTTTGCA
AACACCACCTTTTGCACTATCTACTAATCATCCTACAGGTAGTAGGGAGAGTGGAAAAGGTTGTTT-GACTTGCATTTGT
GTTTTCCTGATAAGAGTTAAATTTCATGTTTTCAAATTGAAATGCTTACTTCAGATAACTTGCTTGCCTTGCCTGATATA
ATAAAATACTAAAAAGAAACCTTCTGATGTTGGCAGAAAAAACGAGGTGCAACGGAATCAATTGGCCTGTATGCTGTCCA
GTGTTGTGAATGTCATAAATGGCGTACAGTTTCAACGAAAGATGAATTTGAGACAATTCGTGAGAACTTCACTGAAGACC
CATGGTTCTGCAGTAAAAGACCTGAGTGCTCGTGTGAAGACCCTCCAGACATTGAGTACGACAGCAGCCGCATATGGGTC
ATCGACAAGCCCAACATACCAAAGCCTCCGCCCAAGACCGAGAGACTTGTGATCATGAGAGGTGATCTGTCTAAAATGGA
CATCTACTATGTCCTGCCAAACGGGAAGCGTGCAAGGGGCATCGGGGACGTGCAGAAGTTCCTTGACACAAACCCAGAGT
ACAAGGACCGCATATCAGCTGAAAGCTTCAGTTTTACGGTGCCCAAGATTGTTGAGGAGACCGTTTCACAGAGCTCTTTG
TGGAAGACTAAAAAGGCTAAAAAGCAGGACAAGATAAATGCTTCAAGCAGCAAGAAGGACAAGGCAAATGCTTCAAGCAG
TGAGAACTAGCCATGTCAGCAAATGCAAAACTGTCGCCTGCCTGCTTGGATGATCCTACCTCATCTACCTTGAAGCTAGT
CATCAAGTCGGTTCTCTCTCTCTCTCTCTGCGATGTTACTCTGAGCGCTCCAATGCACTGAATCTCTTCCTTTTTATGCA
TGAGTTTCTGGTAAAATTCTGAGATGCTCGAGAAGGGCTGTAGC--TTGTTCTCTTCTAATAAAAAGATCTAGTTATAGA
TGTCCTTGAGTTTACCATCCGCTGTGATACATTGTTTTACCAGATGACCATATGCGTAGAGATCTCATTAGAAAGCAGCC
GAATTGGTCAATACTGTCCTAAGCTAGGGTGTTAATTCTGCCATCGTTTGATTTGATTTACATTCTGCACTGCGAAACCT
GTATACTCCAGATGAAGGCTGACATACTCCAAGATTCTGTCATCAACCACAAATTCTGGCAAGGTCGCATAGGTAGCAGA
AACT--AACGCCAGATGAAGGCTCACATA-----------------------------------------AATCCTCAGA
ACAACTCCAACACGGGGAGAATATCATACGGAAACCAATATTCAATGAAAATTTCGTGAAAACTATATTTTAAAGTTTCA
AAAAAATCTAAAAAAATGTGGGATGTTAATAAGGTGATGTTTTATTGCTACATAAAATTTCTAGTTGAGAAACATTACGA
GATGTGGCACTATTTAACACTGATTTTGTCTTTTTCATAGCTCACATCTCGTAATGTGTTTTAACTTGAAATTTTATATG
GCAAAAAACCATCATCCTCTTAACGTCCTACATTTTTTTCAATTTTTTTGACACTTTAAAACATCTTTTTCTCGTGGTTT
TTATCGGTTTCCACCGAATGTTGGTTTCCGTATGGTATTCTCCCACTTCCAACACGTCGACCCAAACGGATGCGTGTTTG
TTCCGCTTTTTGTCCATTTGGGCTGGCTTGTCCGCCCCCTTATGTGTTTGGGTCGGCAATGCCCGGACGTATTTTCGTAT
GTGTTTGGTTCGGCA
>chr1D_1
TTACTTTATTTCCATGGCAAAATTACTCTATTTTTGCCATGGAAAATTTTAGTCCATTTTTTGCCATCGCATACTTTTAA
TGACATGGCAAATTTTACTTTATTTTTGCCATGGCAAATTTATTGTAAA------GGCAATTTTAATTTAAATATGATGC
CAAATTTACATTTTTCAGGAACACGGCGACTTTTTACTATGTAGCATGGTATATACTTGTGTTCACATGGAAAATTTTAA
TTTATTTTCCACGGAAAACTTAATCCATGTCTGCGATGGAAAATTTTAATCCATTTTTTTCCATGGCAAAATCTACTCCA
TTTTTACCATGGCAAGAATGCTTTTATTCACATGGCAAATTTTAGTTTTTTTTGCCATGGCAAAATCTACTCCATTTTTG
CCATGGCAAGAATGCTTTTATTCACATGGCAATTTTTCGTTTATTTTGCCATGTAATTTTTTCTTTTTAAATACTTGGTT
TTTATTTGTCATAACGTTTTCGGACGGGGGTTTTCCAAATCGAACGTTCGGTGAATATTAGGTTTTA-CCTATGTCATTT
TTCTGCTTTTTATAGATGATGGCATTTTTTTGGTACTGGG--ATTTTTTAGCTTCTTTACAAGGCATATAAGACGGTGAT
GGACAAGTTGCGTTAGGGT--TGTTTTTTTTTCACCTTTATTCAGGCTGATCCATCCTTC--------------------
---------------------------------------------------------------GTAACAAACAAATTGTT
TGGTGGGTGGTC----------------------------------------------TGACATTGAGGGTGGATCACTT
TCGGTGAGCATACCGTGGACGATCCTGTCCGTATATCCCCGTAACCACTTGCCCGAGATCCACTCTCCCCACTTCCGTCC
CCATCCGGACGGCCGACCTTGGCTCCGTCCTCTCGCATCCGCCCGCCTACTACCGGCGCCGTCGCCGGTGGCTTCTCCAG
CGGGGCGCCTCCGAGTTCCCGACGCAGGCCACCTCACTGTCGAACATGGCCTCGCCGGCGCCGGTTCCGGCCTCGCCGGG
GTCCTCCTCTCAGGTCCCTTTACCCTTCTTTGATCTTCCCCGCCTTGATTGATTAATGTTTCCGCAGCTTTAATTTCCTC
CCCTGTGCAATCTCCTTGGTGATGGACTGATGGTTATGTAATGCTATGAGGTCAATTTCGGCGTGGTGGGCGCTGGTGTA
ATGCTCAGAGGTTGATTTCGTTGCTATTGCGGGGGTAGGTTTGGTTGCATCTGGCTGCTTTGTTTGGTAGGGATGGCTGG
ATTGTGATGAGTATCTACATGCCGGATCCCTGAACAAAAAGGTTGAGCCTTGTTCTAGAAGAACATCAATGTTGGCTGCA
TATTTGTTTGGATAGCCTCAGAATAGGATTTGGTGATCGATCCTGCACACATGCCTTTGGTTCGGGACCGGATACATGAG
AAATTTTGTTCCTTTATTCATCTGTTAGGCTGGATACA--TGCGTTACTGTTAGTACCAAAGTTATAGACATGTCCACTT
GGACTATTGTCTATATATGGTGAGGGCAGGTATGTGAAGACTGTTTAACCAGTTGCAGGGAGGTTAGGAGCTTCAAACAA
CAACAAATAACTGTGGGTTATTCTCTAAAGTCATAGTTGGGAACTTGGAATCAAGAGAATATGTAGTAGAGAATGAAGAA
AAATGTGAAATTTGTGCAATCATTAAAGGGGTTACACAGTTCCCATCTCCTGTCAAGTAAGCTAATTGATATAGAATTCA
GATCAGTGTAAGCTTGTTATTGGTCGATATTTCCATTGCAATTGGCAATGCAGCAGTGTTAACCTATTTGCGGTTC----
----------------TTAAGATTTCAGACAATGTGTTCTCAATCTACACTGTTACATAACTAACAATAGTGATTGATGG
GCCGAA--------------------TTGCTGTATATCCCAGTAATATAATGGAACACAATTATGGCAACTCAATCCAGC
AAAACAATTGTCTTGGCCAATCTCCTCTTTAGGCTCTGTTGGGGACAACAGTATAAGAAATAGCTGTGTTGTTGTGACAT
TGTTTAACCAAAGACAACTGCCAGCATGGAAAGCAAATGTATTGTGCAAACCATTAGATATTTCTTTTGTATTCATGTTT
ATAATCTGGAATGGCTGTGCATTTTTCTTTAGATTGTAGGAATGGTTGTGTTAGATGTGTTCAGGCTTGCGCAGTTTACA
AACACCACCTTTTGCACTATCCACTAATCATCCTACAGGTAGTAGGGAGAGTGGAAAAGGTTG-TT-GACTTGCATTTGT
GTTTTCCTGATAAGAGTTAAATTTCATGTTTTCAAATTGAAATGCTTACTTCAGATAACTTGCTTGCCTTGCCTGATATA
ATAAAATACTAAAAAGAAACCTTCTGATGTTGGCAGAAAAAACGAGGTGCAACGGAATCAATTGGCCTGTATGCTGTCCA
GTGTTGTGAATGTCATAAATGGCGTACAGTTTCAACGAAAGATGAATTTGAGACAATTCGTGAGAACTTCACTGAAGACC
CATGGTTCTGCAGTAAAAGACCTGAGTGCTCGTGTGAAGACCCTCCAGACATTGAGTACGACAGCAGCCGCATCTGGGTC
ATCGACAAGCCCAACATACCAAAGCCTCCGCCCAAGACCGAGAGACTTGTGATCATGAGAGGTGATCTGTCTAAAATGGA
CATCTACTATGTCCTGCCAAACGGGAAGCGTGCAAGGGGCATCGGGGACGTGCAGAAGTTCCTCGACACAAACCCAGAGT
ACAAAGACCGCATATCAGCTGAAAGCTTCAGTTTTACGGTGCCCAAGATCGTTGAGGAGACCGTTTCGCAGAGCTCTTTG
TGGAAGACTAAAAAGGCTAAAAAGCAGGACAAGATAAATGCTTCAAGCAGCAAGAAGGACAAGGCAAATGCTTCAAGCAG
CGAGAACTAGCCATGGCAGCAAATGCAAAACTGTCGCCTGC-TGCTTGGATGATCCTACCTCATCTACCTTGAAGTTAGT
CATCAAGTCGGG------TCTCTCTCTCTGCGATGTTACTCTGAGCGCTCCAATGCACTGAATCTCTTCGTTTTTATGCA
CGAGTTTCTGGTAAAATTCTGAGATGCTCGAGAAGGGCTGTAGC--T--TTCTCTTCTAATAAAAAGATCTAGTTACAGA
TGTCCTTGAGTTTACCATCCGCCGTGATACATTGTTTTACCAGATGGCCATATGCGTAGAGATCTCATTAGAAAGCAGCT
GAATTGGTCAATACTGTCCTAAGCTAGGGTGTTAATTCTGCCATCGTTTGATTTGATTTACATTCTGCACTGCGAAACCT
ATATATGACAATTGCTATCCATCA--------------GTCATCAACCACAAATTCTGGCAAGGCCACATAGGTAGCAGA
AACT--AACGCCAGATGAAGGCTCACATATTGCAAGATTCTGTGTTTTGAAATCCTTAGAGCAACTCCGAAATCCTTAGA
GCAACTCCAACG--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------CATCGACCCAAACGGACGCGTGTTTG
TTCTGTTTTTTGTCCGTTTGGGTCGGCTTGTCCGCCCCCTTATGTGTTTGGGTCGGCAATGCGCAGATGCATTTTTGT--
---------------
>chr1B_761
TTATTTA-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------TTTATTTTTGACACGGAGGGGGTATCAATT
TCGGTGAGCA-----TGGACGATCCTGTCCGTATATCCCTGTAACCCCTGCCCTGAGATCCACTCTCCCCTCTTCCGTCC
CCA------------ACCTTGGTTCCGTCCTCTCGCATCCGCCCGCCTACTACCGGCGCCGTCGCCGGTGGCCTCTCCAG
CGGGGCGCCTCCGAGTTCCCGACGCAGTCCACCTCACTGTCGAACATGGCCTCGCCGGCGCCGGTTCCGGCCTCGCCGGG
GTCCTCCTCTCAGGTCCCTTTACCCTTCTTTGATCTTCCCCGCCTTGGTTGATTAATGTTTCCGCAGCTTTAATTTCGTC
CTCGATGCAATCTCCTTGGTGACGGACTGATGGTTATGTAATGCTATGAGGTCGATTTCGGCGTGGTGGGCGCTGGTGTA
ATGCTCAGAGGTTGATTTCGTTGCTATTGTGGGGGTAGGTTTGGTTGCATCTGGCTGCTTTGTTTGGTAGGGATGGGTGG
ATTGTGATTACTATCTACATGCCGGATCCCTGAACAAAAAGGTTGAGCCTTGTTCTAGAAGAACATCAATGTTGGCTGCA
TATTTGTTTGGATGGCCTCAGAATAGGATTTGGTGATCGATCCTGCACACATGCCTTTGGTTCGGGACCGGATACATGAG
AAATTTTGTTCCTTTATTCATCTGT-AGGCTGGATTTATGTGCATTACTGTTAGTACCGAAGTTATGGACATGTCGATTT
GGACTATTGTCTATATATGGTGAGTGCAGGTATGTGAAGACTGTTTAACTAGTTACAGGGAGGTTAGGAGCTTCAAACAT
CAACAGATAATTGTTGGTTATTCCCTAAAGTCATAGTCAGGAACTTGGAATCAGGAGAATATGTAGGAGATAATGAAGA-
AAATGTCAAATTTATCCAATTAG--AAGGGGTTAAGCTGTTCCCATCTCCTGTCAATTAAGCTAATTGATATAGAATCTA
GATCAATGTAAGCTTGTTATTGGTCGATATTTCCATGGCAATTGGCAATGCAGCAGTGTTAACCTATTTGCGGTTC----
----------------TA--------------------CTCAATCTACACTGTTACATAACTAACAATAGTGATTAATGG
GCCCAAAATAAAAGTTGTTTTTGTTTTTGCTGTATATCCCAGTAATATAATGGAACACAATTATGGCAACTCGATCCAGC
AAAACAATTGTCTTGGCCAATCTCTTGTTTAGGCTCTGTTGAGGACAACAGTATAAGAAATAGCTGTGTTGTTGTGACAT
TGTTTACCCAAAGACAACTGCCAGCATGGAAAGCAAATGTATTGTGCAAACCATTAGATATTTCTTTTGTATTCATGTTT
ATAATCTGGAATGGCTGTGCATTTTTCTTTAGATTGTAGGAATGGTTTTGTTAGATGTGTTCAGTTTTGTGCAGTTTACA
AACACCACCTTCTGCACTATCCACTAATCATCCTACAGGTAGTAGGGAGAGTGGAAAAGGTTG-TTTGACTTACATTTGT
GTTTTCCCGATAAGAGTTAAATTTCATGTTTTCAAATTGAAGTGCTTACTTAAGATAACTTGCTTGCCTTGCCTGATATA
ATAAAATACTAAAAAGAAACCTTCTGATGTTGGCAGAAAAAACGAGGTGCAACGGAATCAATTGGCCTGTATGCTGTCCA
GTGTTGTGAATGTCATAAATGGCGTACAGTTTCAACGAAAGATGAATTTGAGACAATTCGTGAGAACTTCACTGAAGACC
CATGGTTCTGCAGTAAAAGACCTGAGTGCTCGTGTGAAGACCCTCCAGACATTGAGTACGACAGCAGCCGCATCTGGGTC
ATCGACAAGCCCAACATACCAAAGCCTCCGCCCAAGACCGAGAGACTTGTGATCATGAGAGGTGATCTGTCTAAAATGGA
CATCTACTATGTCCTGCCAAACGGGAAGCGTGCAAGGGGCATCGGGGACGTGCAGAAGTTCCTCGACACAAACCCAGAGT
ACAAAGACCGCATATCAGCTGAAAGCTTCAGTTTTATGGTGCCCAAGATTGTTGAGGAGACCGTTTCGCAGAGCTCTTTG
TGGAAGACTAAAAAGGCTAAAAAGCAGGACAAGATAAATGCTTCAAGCAGCAAGAAGGACAAGGCAAATGCTTCAAGCAG
CGAGAACTAGCCATGGCAGCAAATGCAAAACTGTCGCCTGT-TGCTTGGATGATCCTACCTCATCTACCTTGAAGTTAGT
CATCAAGTCGGT------TCTCTCTCTCTGCGATGTTACTCTGAGCGCTCCAATGCACTAAATCTCTTCGTTTTTATGCA
TGAGTTTCTGGTAAAATTCTGAGATGCTCGAGAAGGGCTGTAGCTTT--TTCTCTTCTAATAAAAAGATCTAGTTACAGA
TGTCCTTGAGTTTACCATCCGCCGTGATACATTGTTTTACCAGATGACCATATGCGTAGAGATCTCATTAGAAAGCAGCC
GAATTGGTCAATACTGTCATAAGCTAGGGTGTTAATTCTGCCATCGTTTGATTTGATTTACATTCTGCACTGCGAAACCT
ATATATGACAATTGCTATCCATCA--------------GTCATCAACCACAAATTCTGGCAAGGCCACATAGGTAGCAGA
AACCTAAACGCCAGATGAAGGCTCGGACATTGCAAGATTCTGTGTTTTGAAATCCTCG--------------------GA
GCAACTCTAACG--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------CGTCGACCCAAATGGACGCGTGTCTA
TTTCGCTTTTTGTCCGTTTGGGTCGGCTTGTCCGCCCCCTTATGTGTTTGGGTCGGCAATGTGCGGACGCATTTT-----
---------------
>SNPs
--------------------S--------------------SS---S----S------------S---S-----------
---S-----------------------S---------------------SSSSSS-------------------------
---S------SSSS-SSSS--S------------------------------------------------S--S------
-----------S--------S--S----S--------S-S---S------------------------------------
--------------------------------------------------------------------------------
--------------------------------S-----S---------------------------------------S-
-----------S-----S----S-S-----------SS------------S---------------SS------------
---------------------S--------S-SSSSSSSSSS-------S-----------------S----SS------
---SS-------S-S----SS---S---------SS-------S---------------SSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-S-S----S----S--S
S---S-SS---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------S---------------
------------------------------------------------S-------------------------------
----------------------------------------------------------------------S---------
--------------------------------------------------------------------------------
-----------------S--------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------S---------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------SS-----------
---------------------------------S-----------------------S----------------------
--------------------------------------------------------------------------------
--------S--------------S---------------------------------------S------S---------
----------------------S---------------------------------------------------------
----------------------S-----------------------------------------------------SSSS
SSSSSSSSSSSSSSSS----------------------------------------------------------------
-S---------------------------------------------------------------------S--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------S--
---------------------S-----------------------------------------S----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------S------
--------------------------------------------------------------------------------
---------------------------------------------------------------S----------------
----S--------------------------------------------------------------S------------
--------------------------------------------------------------------------------
S--------------S-------------------------S---------------------------------S----
------------SSSSSS---------------------------------------------------S----------
-----------------------------------------------SS---------------------------S---
----------------------S---------------------------------------------------------
--------------------------------------------------------------------------------
S----SSS--SS--SSSS-SSS--SSSSSSSSSSSSSS--------------------------S-S-------------
----------------------------------------------------------------------------S---
S----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------S---------
---------------S------SS--------------------------------------S------S-----S--SS
SSSSSSSSSSSSSSS
>forward_820
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
CGGTAGACGGTTTCCAGACC------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------
>reverse_1783
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------CAAGGGGTTAAGCTGTTCCCA-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------
>forward_1508
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------ACATGCCTTTGGTTCGGGAA------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------
>reverse_2714
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------ATGGGTC
ATCGACAAGCCC--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------
>forward_1509
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------CATGCCTTTGGTTCGGGAAG-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------
>reverse_2885
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----GGACCGCATATCAGCTGAAAG-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------
>forward_2864
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------GGGACGTGCAGAAGTTCCTT----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------
>reverse_3967
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------TTCCAACACGTCGACCCAAA--------------
--------------------------------------------------------------------------------
---------------
