Multiple sequence alignment - TraesCS1A01G250100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G250100 chr1A 100.000 3987 0 0 1 3987 441926348 441930334 0.000000e+00 7363.0
1 TraesCS1A01G250100 chr1A 96.154 78 3 0 2339 2416 441928609 441928686 1.160000e-25 128.0
2 TraesCS1A01G250100 chr1A 96.154 78 3 0 2262 2339 441928686 441928763 1.160000e-25 128.0
3 TraesCS1A01G250100 chr1A 93.023 43 3 0 141 183 535282850 535282808 3.330000e-06 63.9
4 TraesCS1A01G250100 chr1A 100.000 29 0 0 2508 2536 441933402 441933430 2.000000e-03 54.7
5 TraesCS1A01G250100 chr1D 93.103 957 58 7 2371 3323 342185766 342186718 0.000000e+00 1395.0
6 TraesCS1A01G250100 chr1D 87.531 1227 75 24 827 2028 342184224 342185397 0.000000e+00 1347.0
7 TraesCS1A01G250100 chr1D 82.103 447 32 27 3319 3723 342187226 342187666 4.940000e-89 339.0
8 TraesCS1A01G250100 chr1D 92.500 160 12 0 2037 2196 342185585 342185744 3.100000e-56 230.0
9 TraesCS1A01G250100 chr1D 91.346 104 4 3 3422 3522 387330178 387330279 1.930000e-28 137.0
10 TraesCS1A01G250100 chr1D 88.000 75 5 2 584 654 342176813 342176887 7.100000e-13 86.1
11 TraesCS1A01G250100 chr1B 94.151 889 47 4 2370 3255 458326487 458327373 0.000000e+00 1349.0
12 TraesCS1A01G250100 chr1B 87.500 1152 80 27 826 1948 458325079 458326195 0.000000e+00 1271.0
13 TraesCS1A01G250100 chr1B 81.038 501 56 22 3246 3720 458329684 458330171 2.930000e-96 363.0
14 TraesCS1A01G250100 chr1B 89.286 280 29 1 1932 2211 458326207 458326485 2.280000e-92 350.0
15 TraesCS1A01G250100 chr1B 86.667 270 32 2 3721 3987 458330383 458330651 3.010000e-76 296.0
16 TraesCS1A01G250100 chr1B 92.308 104 4 4 3420 3522 520682563 520682663 1.150000e-30 145.0
17 TraesCS1A01G250100 chr1B 88.235 51 4 2 2336 2386 9277209 9277161 4.300000e-05 60.2
18 TraesCS1A01G250100 chr1B 90.909 44 3 1 2338 2381 606319264 606319222 1.550000e-04 58.4
19 TraesCS1A01G250100 chr1B 100.000 28 0 0 2269 2296 583952478 583952505 7.000000e-03 52.8
20 TraesCS1A01G250100 chr7D 89.373 574 55 6 1 570 551783157 551783728 0.000000e+00 717.0
21 TraesCS1A01G250100 chr7D 92.857 98 6 1 3424 3521 535547389 535547293 1.490000e-29 141.0
22 TraesCS1A01G250100 chr7A 87.674 576 66 5 1 573 709748463 709747890 0.000000e+00 665.0
23 TraesCS1A01G250100 chr7A 94.737 38 2 0 2260 2297 159698803 159698840 4.300000e-05 60.2
24 TraesCS1A01G250100 chr6D 86.456 443 56 3 125 565 193217377 193217817 2.150000e-132 483.0
25 TraesCS1A01G250100 chr6A 93.421 304 19 1 1 304 358161585 358161283 2.190000e-122 449.0
26 TraesCS1A01G250100 chr6A 91.837 245 19 1 322 565 358161314 358161070 1.370000e-89 340.0
27 TraesCS1A01G250100 chr5B 77.023 309 46 21 68 363 94241570 94241274 1.920000e-33 154.0
28 TraesCS1A01G250100 chr5B 94.444 90 4 1 3426 3514 658381031 658381120 1.930000e-28 137.0
29 TraesCS1A01G250100 chr5B 95.000 40 2 0 2339 2378 192382499 192382538 3.330000e-06 63.9
30 TraesCS1A01G250100 chr4B 95.556 90 4 0 3425 3514 389113855 389113766 1.150000e-30 145.0
31 TraesCS1A01G250100 chr5A 94.624 93 3 2 3422 3514 650246610 650246700 4.150000e-30 143.0
32 TraesCS1A01G250100 chr5A 92.233 103 3 5 3424 3524 650290117 650290018 1.490000e-29 141.0
33 TraesCS1A01G250100 chr5A 93.023 43 3 0 2339 2381 191037085 191037043 3.330000e-06 63.9
34 TraesCS1A01G250100 chr3B 90.654 107 5 5 3432 3536 222522 222625 1.930000e-28 137.0
35 TraesCS1A01G250100 chr3B 97.143 35 1 0 2339 2373 829121951 829121985 4.300000e-05 60.2
36 TraesCS1A01G250100 chr5D 95.000 40 2 0 2339 2378 177683466 177683505 3.330000e-06 63.9
37 TraesCS1A01G250100 chr4A 94.872 39 2 0 2339 2377 450343893 450343931 1.200000e-05 62.1
38 TraesCS1A01G250100 chr6B 97.143 35 1 0 2339 2373 438098694 438098728 4.300000e-05 60.2
39 TraesCS1A01G250100 chr2B 85.714 56 8 0 134 189 12973368 12973423 4.300000e-05 60.2
40 TraesCS1A01G250100 chr3A 100.000 30 0 0 2271 2300 15092037 15092008 5.570000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G250100 chr1A 441926348 441930334 3986 False 2539.666667 7363 97.43600 1 3987 3 chr1A.!!$F2 3986
1 TraesCS1A01G250100 chr1D 342184224 342187666 3442 False 827.750000 1395 88.80925 827 3723 4 chr1D.!!$F3 2896
2 TraesCS1A01G250100 chr1B 458325079 458330651 5572 False 725.800000 1349 87.72840 826 3987 5 chr1B.!!$F3 3161
3 TraesCS1A01G250100 chr7D 551783157 551783728 571 False 717.000000 717 89.37300 1 570 1 chr7D.!!$F1 569
4 TraesCS1A01G250100 chr7A 709747890 709748463 573 True 665.000000 665 87.67400 1 573 1 chr7A.!!$R1 572
5 TraesCS1A01G250100 chr6A 358161070 358161585 515 True 394.500000 449 92.62900 1 565 2 chr6A.!!$R1 564

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
653 657 0.030235 GGGTGAAAGTGAACGCAACC 59.970 55.0 0.00 0.0 0.0 3.77 F
826 830 0.031585 TGTAGCGGCGTGTGGATATC 59.968 55.0 9.37 0.0 0.0 1.63 F
2329 2582 0.034896 ACCGCTCCATTGTCTTTCGT 59.965 50.0 0.00 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2310 2563 0.034896 ACGAAAGACAATGGAGCGGT 59.965 50.0 0.0 0.0 0.00 5.68 R
2356 2609 0.188587 TGCTACTCCCTCCGATCCAT 59.811 55.0 0.0 0.0 0.00 3.41 R
3768 7128 0.167470 CGCCGTCCGACGATGTATAT 59.833 55.0 22.4 0.0 46.05 0.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
119 121 2.344872 TGCACTGCAGCTCGACAT 59.655 55.556 15.27 0.00 33.32 3.06
121 123 1.739196 GCACTGCAGCTCGACATCA 60.739 57.895 15.27 0.00 0.00 3.07
256 258 4.492160 GCCGTCGCGAGATCCACA 62.492 66.667 10.24 0.00 45.19 4.17
362 365 2.270205 CGGCCTCCTGCTTCATGT 59.730 61.111 0.00 0.00 40.92 3.21
443 446 0.978667 GAGGAGTGGGGGAGAAGGTC 60.979 65.000 0.00 0.00 0.00 3.85
444 447 1.081277 GGAGTGGGGGAGAAGGTCT 59.919 63.158 0.00 0.00 0.00 3.85
506 510 4.675029 GTGGGGTCGGACACGTGG 62.675 72.222 21.57 1.74 41.85 4.94
565 569 3.878699 TCCGGCTTAAAGAGAACGTTTTT 59.121 39.130 0.46 1.63 0.00 1.94
578 582 8.485050 AGAGAACGTTTTTCTTTATTTAACGC 57.515 30.769 0.46 0.00 43.73 4.84
579 583 8.340443 AGAGAACGTTTTTCTTTATTTAACGCT 58.660 29.630 0.46 0.00 43.73 5.07
580 584 9.584839 GAGAACGTTTTTCTTTATTTAACGCTA 57.415 29.630 0.46 0.00 43.73 4.26
581 585 9.934190 AGAACGTTTTTCTTTATTTAACGCTAA 57.066 25.926 0.46 0.00 43.73 3.09
610 614 7.619964 AGGTTTATTTAACACCTTGTATCGG 57.380 36.000 0.00 0.00 37.70 4.18
611 615 6.094464 AGGTTTATTTAACACCTTGTATCGGC 59.906 38.462 0.00 0.00 37.70 5.54
612 616 6.094464 GGTTTATTTAACACCTTGTATCGGCT 59.906 38.462 0.00 0.00 38.55 5.52
613 617 6.671614 TTATTTAACACCTTGTATCGGCTG 57.328 37.500 0.00 0.00 0.00 4.85
614 618 3.688694 TTAACACCTTGTATCGGCTGT 57.311 42.857 0.00 0.00 0.00 4.40
615 619 1.808411 AACACCTTGTATCGGCTGTG 58.192 50.000 0.00 0.00 0.00 3.66
616 620 0.673644 ACACCTTGTATCGGCTGTGC 60.674 55.000 0.00 0.00 0.00 4.57
617 621 1.447838 ACCTTGTATCGGCTGTGCG 60.448 57.895 0.00 0.00 0.00 5.34
618 622 1.153647 CCTTGTATCGGCTGTGCGA 60.154 57.895 0.00 0.00 0.00 5.10
619 623 1.421410 CCTTGTATCGGCTGTGCGAC 61.421 60.000 0.00 0.00 0.00 5.19
620 624 1.742900 CTTGTATCGGCTGTGCGACG 61.743 60.000 0.00 0.00 0.00 5.12
621 625 2.202570 GTATCGGCTGTGCGACGT 60.203 61.111 0.00 0.00 0.00 4.34
622 626 1.804326 GTATCGGCTGTGCGACGTT 60.804 57.895 0.00 0.00 0.00 3.99
623 627 0.523968 GTATCGGCTGTGCGACGTTA 60.524 55.000 0.00 0.00 0.00 3.18
624 628 0.382873 TATCGGCTGTGCGACGTTAT 59.617 50.000 0.00 0.00 0.00 1.89
625 629 0.459585 ATCGGCTGTGCGACGTTATT 60.460 50.000 0.00 0.00 0.00 1.40
626 630 0.668096 TCGGCTGTGCGACGTTATTT 60.668 50.000 0.00 0.00 0.00 1.40
627 631 0.993532 CGGCTGTGCGACGTTATTTA 59.006 50.000 0.00 0.00 0.00 1.40
628 632 1.591158 CGGCTGTGCGACGTTATTTAT 59.409 47.619 0.00 0.00 0.00 1.40
629 633 2.596575 CGGCTGTGCGACGTTATTTATG 60.597 50.000 0.00 0.00 0.00 1.90
630 634 2.605818 GGCTGTGCGACGTTATTTATGA 59.394 45.455 0.00 0.00 0.00 2.15
631 635 3.062909 GGCTGTGCGACGTTATTTATGAA 59.937 43.478 0.00 0.00 0.00 2.57
632 636 4.263800 GCTGTGCGACGTTATTTATGAAG 58.736 43.478 0.00 0.00 0.00 3.02
633 637 4.253352 TGTGCGACGTTATTTATGAAGC 57.747 40.909 0.00 0.00 0.00 3.86
634 638 3.241836 TGTGCGACGTTATTTATGAAGCG 60.242 43.478 0.00 0.00 0.00 4.68
635 639 2.283086 TGCGACGTTATTTATGAAGCGG 59.717 45.455 0.00 0.00 0.00 5.52
636 640 2.348218 GCGACGTTATTTATGAAGCGGG 60.348 50.000 0.00 0.00 0.00 6.13
637 641 2.861935 CGACGTTATTTATGAAGCGGGT 59.138 45.455 0.00 0.00 0.00 5.28
638 642 3.302221 CGACGTTATTTATGAAGCGGGTG 60.302 47.826 0.00 0.00 0.00 4.61
639 643 3.864243 ACGTTATTTATGAAGCGGGTGA 58.136 40.909 0.00 0.00 0.00 4.02
640 644 4.255301 ACGTTATTTATGAAGCGGGTGAA 58.745 39.130 0.00 0.00 0.00 3.18
641 645 4.696402 ACGTTATTTATGAAGCGGGTGAAA 59.304 37.500 0.00 0.00 0.00 2.69
642 646 5.163794 ACGTTATTTATGAAGCGGGTGAAAG 60.164 40.000 0.00 0.00 0.00 2.62
643 647 5.163794 CGTTATTTATGAAGCGGGTGAAAGT 60.164 40.000 0.00 0.00 0.00 2.66
644 648 4.701956 ATTTATGAAGCGGGTGAAAGTG 57.298 40.909 0.00 0.00 0.00 3.16
645 649 3.410631 TTATGAAGCGGGTGAAAGTGA 57.589 42.857 0.00 0.00 0.00 3.41
646 650 2.270352 ATGAAGCGGGTGAAAGTGAA 57.730 45.000 0.00 0.00 0.00 3.18
647 651 1.305201 TGAAGCGGGTGAAAGTGAAC 58.695 50.000 0.00 0.00 0.00 3.18
648 652 0.234884 GAAGCGGGTGAAAGTGAACG 59.765 55.000 0.00 0.00 0.00 3.95
649 653 1.782028 AAGCGGGTGAAAGTGAACGC 61.782 55.000 0.00 0.00 46.50 4.84
650 654 2.539338 GCGGGTGAAAGTGAACGCA 61.539 57.895 0.00 0.00 45.57 5.24
651 655 2.018544 CGGGTGAAAGTGAACGCAA 58.981 52.632 0.00 0.00 0.00 4.85
652 656 0.316689 CGGGTGAAAGTGAACGCAAC 60.317 55.000 0.00 0.00 0.00 4.17
653 657 0.030235 GGGTGAAAGTGAACGCAACC 59.970 55.000 0.00 0.00 0.00 3.77
654 658 0.316689 GGTGAAAGTGAACGCAACCG 60.317 55.000 0.00 0.00 41.14 4.44
655 659 0.653636 GTGAAAGTGAACGCAACCGA 59.346 50.000 0.00 0.00 38.29 4.69
656 660 1.062880 GTGAAAGTGAACGCAACCGAA 59.937 47.619 0.00 0.00 38.29 4.30
657 661 1.062880 TGAAAGTGAACGCAACCGAAC 59.937 47.619 0.00 0.00 38.29 3.95
658 662 1.329599 GAAAGTGAACGCAACCGAACT 59.670 47.619 0.00 0.00 38.29 3.01
659 663 0.655733 AAGTGAACGCAACCGAACTG 59.344 50.000 0.00 0.00 38.29 3.16
660 664 0.461339 AGTGAACGCAACCGAACTGT 60.461 50.000 0.00 0.00 38.29 3.55
661 665 0.315869 GTGAACGCAACCGAACTGTG 60.316 55.000 0.00 0.00 38.29 3.66
662 666 1.368850 GAACGCAACCGAACTGTGC 60.369 57.895 0.00 0.00 38.29 4.57
665 669 2.248431 GCAACCGAACTGTGCGAC 59.752 61.111 10.36 0.00 0.00 5.19
666 670 2.544359 CAACCGAACTGTGCGACG 59.456 61.111 10.36 0.00 0.00 5.12
667 671 2.105528 AACCGAACTGTGCGACGT 59.894 55.556 10.36 0.00 0.00 4.34
668 672 1.519898 AACCGAACTGTGCGACGTT 60.520 52.632 10.36 3.29 0.00 3.99
669 673 0.248990 AACCGAACTGTGCGACGTTA 60.249 50.000 10.36 0.00 0.00 3.18
670 674 0.038892 ACCGAACTGTGCGACGTTAT 60.039 50.000 10.36 0.00 0.00 1.89
671 675 1.065358 CCGAACTGTGCGACGTTATT 58.935 50.000 10.36 0.00 0.00 1.40
672 676 2.252747 CCGAACTGTGCGACGTTATTA 58.747 47.619 10.36 0.00 0.00 0.98
673 677 2.855963 CCGAACTGTGCGACGTTATTAT 59.144 45.455 10.36 0.00 0.00 1.28
674 678 3.301579 CCGAACTGTGCGACGTTATTATG 60.302 47.826 10.36 0.00 0.00 1.90
675 679 3.594312 GAACTGTGCGACGTTATTATGC 58.406 45.455 0.00 0.00 0.00 3.14
676 680 2.612604 ACTGTGCGACGTTATTATGCA 58.387 42.857 0.00 0.00 0.00 3.96
677 681 2.997303 ACTGTGCGACGTTATTATGCAA 59.003 40.909 0.00 0.00 37.30 4.08
678 682 3.433957 ACTGTGCGACGTTATTATGCAAA 59.566 39.130 0.00 0.00 37.30 3.68
679 683 4.083749 ACTGTGCGACGTTATTATGCAAAA 60.084 37.500 0.00 0.00 37.30 2.44
680 684 4.399112 TGTGCGACGTTATTATGCAAAAG 58.601 39.130 0.00 0.00 37.30 2.27
681 685 3.237433 GTGCGACGTTATTATGCAAAAGC 59.763 43.478 0.00 0.00 37.30 3.51
682 686 2.458966 GCGACGTTATTATGCAAAAGCG 59.541 45.455 0.00 0.00 0.00 4.68
683 687 3.666001 CGACGTTATTATGCAAAAGCGT 58.334 40.909 0.00 0.00 0.00 5.07
684 688 4.085884 CGACGTTATTATGCAAAAGCGTT 58.914 39.130 0.00 0.00 0.00 4.84
685 689 4.199575 CGACGTTATTATGCAAAAGCGTTC 59.800 41.667 0.00 0.00 0.00 3.95
686 690 4.085884 ACGTTATTATGCAAAAGCGTTCG 58.914 39.130 0.00 0.00 0.00 3.95
687 691 3.062772 CGTTATTATGCAAAAGCGTTCGC 60.063 43.478 9.24 9.24 0.00 4.70
688 692 2.919666 ATTATGCAAAAGCGTTCGCT 57.080 40.000 14.02 14.02 44.14 4.93
689 693 1.962412 TTATGCAAAAGCGTTCGCTG 58.038 45.000 20.05 10.10 41.76 5.18
690 694 1.152510 TATGCAAAAGCGTTCGCTGA 58.847 45.000 20.05 3.51 41.76 4.26
691 695 0.310543 ATGCAAAAGCGTTCGCTGAA 59.689 45.000 20.05 4.35 41.76 3.02
692 696 0.591236 TGCAAAAGCGTTCGCTGAAC 60.591 50.000 20.05 10.74 41.76 3.18
693 697 0.591236 GCAAAAGCGTTCGCTGAACA 60.591 50.000 20.05 0.00 42.05 3.18
694 698 1.821336 CAAAAGCGTTCGCTGAACAA 58.179 45.000 20.05 0.00 42.05 2.83
695 699 2.384382 CAAAAGCGTTCGCTGAACAAT 58.616 42.857 20.05 0.73 42.05 2.71
696 700 2.316119 AAAGCGTTCGCTGAACAATC 57.684 45.000 20.05 8.67 42.05 2.67
697 701 1.225855 AAGCGTTCGCTGAACAATCA 58.774 45.000 20.05 0.00 42.05 2.57
716 720 3.304041 GCCTCTGGCTGCTTATCTC 57.696 57.895 0.00 0.00 46.69 2.75
717 721 0.467384 GCCTCTGGCTGCTTATCTCA 59.533 55.000 0.00 0.00 46.69 3.27
718 722 1.540797 GCCTCTGGCTGCTTATCTCAG 60.541 57.143 0.00 0.00 46.69 3.35
719 723 1.761784 CCTCTGGCTGCTTATCTCAGT 59.238 52.381 0.00 0.00 34.21 3.41
720 724 2.961741 CCTCTGGCTGCTTATCTCAGTA 59.038 50.000 0.00 0.00 34.21 2.74
721 725 3.386078 CCTCTGGCTGCTTATCTCAGTAA 59.614 47.826 0.00 0.00 34.21 2.24
722 726 4.501229 CCTCTGGCTGCTTATCTCAGTAAG 60.501 50.000 0.00 0.00 35.31 2.34
730 734 5.017294 GCTTATCTCAGTAAGCCAACTCT 57.983 43.478 7.27 0.00 46.84 3.24
731 735 5.047188 GCTTATCTCAGTAAGCCAACTCTC 58.953 45.833 7.27 0.00 46.84 3.20
732 736 5.394663 GCTTATCTCAGTAAGCCAACTCTCA 60.395 44.000 7.27 0.00 46.84 3.27
733 737 4.734398 ATCTCAGTAAGCCAACTCTCAG 57.266 45.455 0.00 0.00 0.00 3.35
734 738 3.501349 TCTCAGTAAGCCAACTCTCAGT 58.499 45.455 0.00 0.00 0.00 3.41
735 739 3.508012 TCTCAGTAAGCCAACTCTCAGTC 59.492 47.826 0.00 0.00 0.00 3.51
736 740 3.230976 TCAGTAAGCCAACTCTCAGTCA 58.769 45.455 0.00 0.00 0.00 3.41
737 741 3.005897 TCAGTAAGCCAACTCTCAGTCAC 59.994 47.826 0.00 0.00 0.00 3.67
738 742 2.965831 AGTAAGCCAACTCTCAGTCACA 59.034 45.455 0.00 0.00 0.00 3.58
739 743 3.580458 AGTAAGCCAACTCTCAGTCACAT 59.420 43.478 0.00 0.00 0.00 3.21
740 744 2.758736 AGCCAACTCTCAGTCACATC 57.241 50.000 0.00 0.00 0.00 3.06
741 745 2.255406 AGCCAACTCTCAGTCACATCT 58.745 47.619 0.00 0.00 0.00 2.90
742 746 3.435275 AGCCAACTCTCAGTCACATCTA 58.565 45.455 0.00 0.00 0.00 1.98
743 747 3.834813 AGCCAACTCTCAGTCACATCTAA 59.165 43.478 0.00 0.00 0.00 2.10
744 748 4.469227 AGCCAACTCTCAGTCACATCTAAT 59.531 41.667 0.00 0.00 0.00 1.73
745 749 4.569966 GCCAACTCTCAGTCACATCTAATG 59.430 45.833 0.00 0.00 0.00 1.90
746 750 5.114780 CCAACTCTCAGTCACATCTAATGG 58.885 45.833 0.00 0.00 33.60 3.16
747 751 5.105187 CCAACTCTCAGTCACATCTAATGGA 60.105 44.000 0.00 0.00 33.60 3.41
748 752 6.401394 CAACTCTCAGTCACATCTAATGGAA 58.599 40.000 0.00 0.00 33.60 3.53
749 753 5.971763 ACTCTCAGTCACATCTAATGGAAC 58.028 41.667 0.00 0.00 33.60 3.62
750 754 4.998788 TCTCAGTCACATCTAATGGAACG 58.001 43.478 0.00 0.00 33.60 3.95
751 755 3.521560 TCAGTCACATCTAATGGAACGC 58.478 45.455 0.00 0.00 33.60 4.84
752 756 3.056179 TCAGTCACATCTAATGGAACGCA 60.056 43.478 0.00 0.00 33.60 5.24
753 757 3.684305 CAGTCACATCTAATGGAACGCAA 59.316 43.478 0.00 0.00 33.60 4.85
754 758 3.684788 AGTCACATCTAATGGAACGCAAC 59.315 43.478 0.00 0.00 33.60 4.17
755 759 3.006940 TCACATCTAATGGAACGCAACC 58.993 45.455 0.00 0.00 33.60 3.77
756 760 2.006888 ACATCTAATGGAACGCAACCG 58.993 47.619 0.00 0.00 35.94 4.44
757 761 2.276201 CATCTAATGGAACGCAACCGA 58.724 47.619 0.00 0.00 38.29 4.69
758 762 2.459060 TCTAATGGAACGCAACCGAA 57.541 45.000 0.00 0.00 38.29 4.30
759 763 2.070783 TCTAATGGAACGCAACCGAAC 58.929 47.619 0.00 0.00 38.29 3.95
760 764 2.073816 CTAATGGAACGCAACCGAACT 58.926 47.619 0.00 0.00 38.29 3.01
761 765 0.591170 AATGGAACGCAACCGAACTG 59.409 50.000 0.00 0.00 38.29 3.16
762 766 0.250124 ATGGAACGCAACCGAACTGA 60.250 50.000 0.00 0.00 38.29 3.41
763 767 0.462225 TGGAACGCAACCGAACTGAA 60.462 50.000 0.00 0.00 38.29 3.02
764 768 0.041576 GGAACGCAACCGAACTGAAC 60.042 55.000 0.00 0.00 38.29 3.18
765 769 0.653636 GAACGCAACCGAACTGAACA 59.346 50.000 0.00 0.00 38.29 3.18
766 770 1.062880 GAACGCAACCGAACTGAACAA 59.937 47.619 0.00 0.00 38.29 2.83
767 771 1.088306 ACGCAACCGAACTGAACAAA 58.912 45.000 0.00 0.00 38.29 2.83
768 772 1.063469 ACGCAACCGAACTGAACAAAG 59.937 47.619 0.00 0.00 38.29 2.77
769 773 1.063469 CGCAACCGAACTGAACAAAGT 59.937 47.619 0.00 0.00 36.29 2.66
770 774 2.285756 CGCAACCGAACTGAACAAAGTA 59.714 45.455 0.00 0.00 36.29 2.24
771 775 3.059188 CGCAACCGAACTGAACAAAGTAT 60.059 43.478 0.00 0.00 36.29 2.12
772 776 4.219033 GCAACCGAACTGAACAAAGTATG 58.781 43.478 0.00 0.00 0.00 2.39
773 777 4.261031 GCAACCGAACTGAACAAAGTATGT 60.261 41.667 0.00 0.00 46.82 2.29
774 778 5.732247 GCAACCGAACTGAACAAAGTATGTT 60.732 40.000 0.00 0.00 45.86 2.71
775 779 6.262601 CAACCGAACTGAACAAAGTATGTTT 58.737 36.000 0.00 0.00 45.86 2.83
776 780 5.816919 ACCGAACTGAACAAAGTATGTTTG 58.183 37.500 0.00 1.81 45.86 2.93
777 781 4.675114 CCGAACTGAACAAAGTATGTTTGC 59.325 41.667 3.02 0.00 45.86 3.68
778 782 5.505654 CCGAACTGAACAAAGTATGTTTGCT 60.506 40.000 3.02 0.00 45.86 3.91
779 783 5.621228 CGAACTGAACAAAGTATGTTTGCTC 59.379 40.000 3.02 1.91 45.86 4.26
780 784 5.095691 ACTGAACAAAGTATGTTTGCTCG 57.904 39.130 3.02 0.00 45.86 5.03
781 785 4.814234 ACTGAACAAAGTATGTTTGCTCGA 59.186 37.500 3.02 0.00 45.86 4.04
782 786 5.090652 TGAACAAAGTATGTTTGCTCGAC 57.909 39.130 3.02 0.00 45.86 4.20
783 787 4.024387 TGAACAAAGTATGTTTGCTCGACC 60.024 41.667 3.02 0.00 45.86 4.79
784 788 3.472652 ACAAAGTATGTTTGCTCGACCA 58.527 40.909 3.02 0.00 40.06 4.02
785 789 4.072131 ACAAAGTATGTTTGCTCGACCAT 58.928 39.130 3.02 0.00 40.06 3.55
786 790 4.083324 ACAAAGTATGTTTGCTCGACCATG 60.083 41.667 3.02 0.00 40.06 3.66
787 791 2.632377 AGTATGTTTGCTCGACCATGG 58.368 47.619 11.19 11.19 0.00 3.66
788 792 1.064060 GTATGTTTGCTCGACCATGGC 59.936 52.381 13.04 3.65 0.00 4.40
789 793 1.647545 ATGTTTGCTCGACCATGGCG 61.648 55.000 13.04 16.58 0.00 5.69
790 794 2.031919 TTTGCTCGACCATGGCGT 59.968 55.556 22.22 1.57 0.00 5.68
791 795 1.017177 GTTTGCTCGACCATGGCGTA 61.017 55.000 22.22 11.96 0.00 4.42
792 796 1.017177 TTTGCTCGACCATGGCGTAC 61.017 55.000 22.22 17.04 0.00 3.67
793 797 2.954868 GCTCGACCATGGCGTACG 60.955 66.667 22.22 11.84 0.00 3.67
794 798 2.488355 CTCGACCATGGCGTACGT 59.512 61.111 22.22 0.00 0.00 3.57
795 799 1.872234 CTCGACCATGGCGTACGTG 60.872 63.158 22.22 15.01 35.80 4.49
822 826 4.710695 CGTGTAGCGGCGTGTGGA 62.711 66.667 9.37 0.00 36.85 4.02
823 827 2.125673 GTGTAGCGGCGTGTGGAT 60.126 61.111 9.37 0.00 0.00 3.41
824 828 1.140161 GTGTAGCGGCGTGTGGATA 59.860 57.895 9.37 0.00 0.00 2.59
825 829 0.249322 GTGTAGCGGCGTGTGGATAT 60.249 55.000 9.37 0.00 0.00 1.63
826 830 0.031585 TGTAGCGGCGTGTGGATATC 59.968 55.000 9.37 0.00 0.00 1.63
827 831 0.314302 GTAGCGGCGTGTGGATATCT 59.686 55.000 9.37 0.00 0.00 1.98
828 832 1.037493 TAGCGGCGTGTGGATATCTT 58.963 50.000 9.37 0.00 0.00 2.40
829 833 0.178068 AGCGGCGTGTGGATATCTTT 59.822 50.000 9.37 0.00 0.00 2.52
830 834 0.304705 GCGGCGTGTGGATATCTTTG 59.695 55.000 9.37 0.00 0.00 2.77
831 835 1.651987 CGGCGTGTGGATATCTTTGT 58.348 50.000 0.00 0.00 0.00 2.83
832 836 2.816689 CGGCGTGTGGATATCTTTGTA 58.183 47.619 0.00 0.00 0.00 2.41
833 837 2.538449 CGGCGTGTGGATATCTTTGTAC 59.462 50.000 0.00 0.00 0.00 2.90
834 838 3.737047 CGGCGTGTGGATATCTTTGTACT 60.737 47.826 0.00 0.00 0.00 2.73
847 851 0.108804 TTGTACTACTGCTGCCTCGC 60.109 55.000 0.00 0.00 0.00 5.03
866 870 1.610886 GCCCTCCCGCTCCATATAAAC 60.611 57.143 0.00 0.00 0.00 2.01
880 884 2.604046 ATAAACCTCGAGCGAGCAAT 57.396 45.000 14.05 4.90 40.69 3.56
907 913 2.731691 ATTTCCTGGCGCGACACACT 62.732 55.000 12.71 0.00 0.00 3.55
908 914 4.662961 TCCTGGCGCGACACACTG 62.663 66.667 12.71 0.00 0.00 3.66
913 919 2.733218 GCGCGACACACTGCAGTA 60.733 61.111 21.20 0.00 0.00 2.74
991 997 2.183046 GACCTCACAGCCTCGCTC 59.817 66.667 0.00 0.00 36.40 5.03
1077 1083 4.379243 CTCCTGTCCACGGCGCTT 62.379 66.667 6.90 0.00 0.00 4.68
1244 1250 4.899239 CGGATCCCGCAGCTCCAC 62.899 72.222 6.06 0.00 41.17 4.02
1245 1251 4.899239 GGATCCCGCAGCTCCACG 62.899 72.222 0.00 0.00 0.00 4.94
1290 1301 0.600557 ACTTCGGTCAGTGCTCAGAG 59.399 55.000 0.00 0.00 0.00 3.35
1299 1310 1.214062 GTGCTCAGAGTCACCGAGG 59.786 63.158 11.80 0.00 0.00 4.63
1309 1324 1.911269 TCACCGAGGCCACTTAGCA 60.911 57.895 5.01 0.00 0.00 3.49
1311 1326 1.021390 CACCGAGGCCACTTAGCAAG 61.021 60.000 5.01 0.00 0.00 4.01
1313 1328 2.109126 CGAGGCCACTTAGCAAGCC 61.109 63.158 5.01 0.18 46.13 4.35
1397 1437 0.940991 GCTTCCAAGCGCCAAAACTG 60.941 55.000 2.29 0.00 42.88 3.16
1426 1469 2.846193 ACGTACTTGCCACTGTTTGAT 58.154 42.857 0.00 0.00 0.00 2.57
1433 1476 3.713858 TGCCACTGTTTGATTGACTTG 57.286 42.857 0.00 0.00 0.00 3.16
1437 1480 4.741676 GCCACTGTTTGATTGACTTGAAAG 59.258 41.667 0.00 0.00 0.00 2.62
1440 1483 6.473455 CCACTGTTTGATTGACTTGAAAGAAC 59.527 38.462 0.00 0.00 0.00 3.01
1443 1488 6.329496 TGTTTGATTGACTTGAAAGAACCAC 58.671 36.000 0.00 0.00 0.00 4.16
1467 1512 7.167136 CACTTTCTGCTTCAAATTGTTTCTCTC 59.833 37.037 0.00 0.00 0.00 3.20
1472 1517 6.042143 TGCTTCAAATTGTTTCTCTCCAAAC 58.958 36.000 0.00 0.00 36.87 2.93
1487 1532 7.610865 TCTCTCCAAACTTGTTTTGTTTCATT 58.389 30.769 0.00 0.00 42.86 2.57
1506 1551 2.574006 TCTGCCTGCATTCTTGAGTT 57.426 45.000 0.00 0.00 0.00 3.01
1511 1556 3.192001 TGCCTGCATTCTTGAGTTTCATC 59.808 43.478 0.00 0.00 0.00 2.92
1512 1557 3.442977 GCCTGCATTCTTGAGTTTCATCT 59.557 43.478 0.00 0.00 0.00 2.90
1514 1559 4.201792 CCTGCATTCTTGAGTTTCATCTCG 60.202 45.833 0.00 0.00 37.28 4.04
1520 1565 3.742882 TCTTGAGTTTCATCTCGCTTGTG 59.257 43.478 0.00 0.00 37.28 3.33
1521 1566 1.800586 TGAGTTTCATCTCGCTTGTGC 59.199 47.619 0.00 0.00 37.28 4.57
1534 1579 0.729116 CTTGTGCGAGGCGAATGAAT 59.271 50.000 0.00 0.00 0.00 2.57
1540 1585 2.744741 TGCGAGGCGAATGAATTTAACA 59.255 40.909 0.00 0.00 0.00 2.41
1542 1587 4.142491 TGCGAGGCGAATGAATTTAACAAT 60.142 37.500 0.00 0.00 0.00 2.71
1543 1588 4.204978 GCGAGGCGAATGAATTTAACAATG 59.795 41.667 0.00 0.00 0.00 2.82
1547 1592 5.863397 AGGCGAATGAATTTAACAATGTGTG 59.137 36.000 0.00 0.00 0.00 3.82
1550 1595 7.201316 GGCGAATGAATTTAACAATGTGTGTAC 60.201 37.037 0.00 0.00 40.60 2.90
1552 1597 7.007009 CGAATGAATTTAACAATGTGTGTACCG 59.993 37.037 0.00 0.00 40.60 4.02
1553 1598 6.621316 TGAATTTAACAATGTGTGTACCGT 57.379 33.333 0.00 0.00 40.60 4.83
1554 1599 6.431278 TGAATTTAACAATGTGTGTACCGTG 58.569 36.000 0.00 0.00 40.60 4.94
1560 1605 2.319136 ATGTGTGTACCGTGTGTGTT 57.681 45.000 0.00 0.00 0.00 3.32
1579 1624 0.254747 TCCCAAGGAAAATCGCGGAT 59.745 50.000 6.13 0.00 0.00 4.18
1622 1667 0.521735 GGTCGTGGTTCCTGATTTGC 59.478 55.000 0.00 0.00 0.00 3.68
1681 1726 5.540911 TCATTTCAAGATTGGCTGAAAACC 58.459 37.500 3.41 0.00 34.54 3.27
1705 1750 2.415512 CTCTCCGGTTCGTTCATTTTCC 59.584 50.000 0.00 0.00 0.00 3.13
1706 1751 1.127951 CTCCGGTTCGTTCATTTTCCG 59.872 52.381 0.00 0.00 38.05 4.30
1798 1843 1.243902 CTCTAGCGCTCTCCCTAAGG 58.756 60.000 16.34 0.00 0.00 2.69
1822 1867 6.176183 GCTATAATGGATATGCAGACCACTT 58.824 40.000 10.67 9.19 36.49 3.16
1828 1873 2.512692 TATGCAGACCACTTGCCATT 57.487 45.000 0.00 0.00 0.00 3.16
1851 1896 6.546428 TGGTTTCCCAAGTACATTTTGAAA 57.454 33.333 0.00 0.00 37.98 2.69
1852 1897 6.578023 TGGTTTCCCAAGTACATTTTGAAAG 58.422 36.000 0.00 0.00 37.98 2.62
1853 1898 6.381420 TGGTTTCCCAAGTACATTTTGAAAGA 59.619 34.615 0.00 0.00 37.98 2.52
1854 1899 7.093289 TGGTTTCCCAAGTACATTTTGAAAGAA 60.093 33.333 0.00 0.00 37.98 2.52
1855 1900 7.766738 GGTTTCCCAAGTACATTTTGAAAGAAA 59.233 33.333 0.00 0.12 0.00 2.52
1856 1901 9.157104 GTTTCCCAAGTACATTTTGAAAGAAAA 57.843 29.630 0.00 0.00 0.00 2.29
1857 1902 8.940768 TTCCCAAGTACATTTTGAAAGAAAAG 57.059 30.769 0.00 0.00 0.00 2.27
1894 1939 4.118410 CTCTCTCCAGCACATTACATCAC 58.882 47.826 0.00 0.00 0.00 3.06
1895 1940 3.515104 TCTCTCCAGCACATTACATCACA 59.485 43.478 0.00 0.00 0.00 3.58
1896 1941 4.162888 TCTCTCCAGCACATTACATCACAT 59.837 41.667 0.00 0.00 0.00 3.21
1897 1942 4.193865 TCTCCAGCACATTACATCACATG 58.806 43.478 0.00 0.00 0.00 3.21
1898 1943 4.080975 TCTCCAGCACATTACATCACATGA 60.081 41.667 0.00 0.00 0.00 3.07
1929 1974 6.246919 TCAGTATCCTACTAAGGGCATCTAC 58.753 44.000 0.00 0.00 43.84 2.59
1948 1993 8.175716 GCATCTACCACACTTAACTGTATTTTC 58.824 37.037 0.00 0.00 0.00 2.29
1952 2025 7.214467 ACCACACTTAACTGTATTTTCATGG 57.786 36.000 0.00 0.00 0.00 3.66
1956 2029 9.398170 CACACTTAACTGTATTTTCATGGAAAG 57.602 33.333 5.22 0.00 32.93 2.62
1960 2033 6.403866 AACTGTATTTTCATGGAAAGCACA 57.596 33.333 13.39 13.39 32.93 4.57
1984 2057 6.417044 CACTTAATCATAAGAAATGCTGCAGC 59.583 38.462 31.89 31.89 40.90 5.25
2028 2101 8.988060 TCAGTATCAGGATAGGAAACATAACAA 58.012 33.333 0.00 0.00 0.00 2.83
2029 2102 9.613428 CAGTATCAGGATAGGAAACATAACAAA 57.387 33.333 0.00 0.00 0.00 2.83
2034 2107 9.613428 TCAGGATAGGAAACATAACAAATACTG 57.387 33.333 0.00 0.00 0.00 2.74
2035 2288 9.613428 CAGGATAGGAAACATAACAAATACTGA 57.387 33.333 0.00 0.00 0.00 3.41
2055 2308 4.380531 TGATTTCTCTCTTGTTCGTTGCT 58.619 39.130 0.00 0.00 0.00 3.91
2157 2410 0.970427 GGTTATTGCTGGGGTGGTGG 60.970 60.000 0.00 0.00 0.00 4.61
2165 2418 0.037734 CTGGGGTGGTGGGTTAACTC 59.962 60.000 5.42 1.05 0.00 3.01
2174 2427 3.201266 TGGTGGGTTAACTCACTTCAACT 59.799 43.478 32.02 0.00 34.57 3.16
2191 2444 2.805671 CAACTACATGAACACCGAGCAA 59.194 45.455 0.00 0.00 0.00 3.91
2211 2464 9.739786 CGAGCAATCATTGTTTTAATTTTTACC 57.260 29.630 0.00 0.00 0.00 2.85
2217 2470 9.719355 ATCATTGTTTTAATTTTTACCACTCCC 57.281 29.630 0.00 0.00 0.00 4.30
2218 2471 8.929487 TCATTGTTTTAATTTTTACCACTCCCT 58.071 29.630 0.00 0.00 0.00 4.20
2219 2472 9.203421 CATTGTTTTAATTTTTACCACTCCCTC 57.797 33.333 0.00 0.00 0.00 4.30
2220 2473 7.292713 TGTTTTAATTTTTACCACTCCCTCC 57.707 36.000 0.00 0.00 0.00 4.30
2221 2474 6.016108 TGTTTTAATTTTTACCACTCCCTCCG 60.016 38.462 0.00 0.00 0.00 4.63
2222 2475 5.502089 TTAATTTTTACCACTCCCTCCGA 57.498 39.130 0.00 0.00 0.00 4.55
2223 2476 4.586306 AATTTTTACCACTCCCTCCGAT 57.414 40.909 0.00 0.00 0.00 4.18
2224 2477 3.622166 TTTTTACCACTCCCTCCGATC 57.378 47.619 0.00 0.00 0.00 3.69
2225 2478 1.492764 TTTACCACTCCCTCCGATCC 58.507 55.000 0.00 0.00 0.00 3.36
2226 2479 0.337082 TTACCACTCCCTCCGATCCA 59.663 55.000 0.00 0.00 0.00 3.41
2227 2480 0.561184 TACCACTCCCTCCGATCCAT 59.439 55.000 0.00 0.00 0.00 3.41
2228 2481 0.561184 ACCACTCCCTCCGATCCATA 59.439 55.000 0.00 0.00 0.00 2.74
2229 2482 1.150135 ACCACTCCCTCCGATCCATAT 59.850 52.381 0.00 0.00 0.00 1.78
2230 2483 1.552337 CCACTCCCTCCGATCCATATG 59.448 57.143 0.00 0.00 0.00 1.78
2231 2484 2.529632 CACTCCCTCCGATCCATATGA 58.470 52.381 3.65 0.00 0.00 2.15
2232 2485 2.899900 CACTCCCTCCGATCCATATGAA 59.100 50.000 3.65 0.00 0.00 2.57
2233 2486 3.517100 CACTCCCTCCGATCCATATGAAT 59.483 47.826 3.65 0.00 0.00 2.57
2234 2487 4.019860 CACTCCCTCCGATCCATATGAATT 60.020 45.833 3.65 0.00 0.00 2.17
2235 2488 4.019860 ACTCCCTCCGATCCATATGAATTG 60.020 45.833 3.65 0.00 0.00 2.32
2236 2489 3.909995 TCCCTCCGATCCATATGAATTGT 59.090 43.478 3.65 0.00 0.00 2.71
2237 2490 4.350816 TCCCTCCGATCCATATGAATTGTT 59.649 41.667 3.65 0.00 0.00 2.83
2238 2491 4.456911 CCCTCCGATCCATATGAATTGTTG 59.543 45.833 3.65 0.00 0.00 3.33
2239 2492 5.308014 CCTCCGATCCATATGAATTGTTGA 58.692 41.667 3.65 0.00 0.00 3.18
2240 2493 5.942236 CCTCCGATCCATATGAATTGTTGAT 59.058 40.000 3.65 0.00 0.00 2.57
2241 2494 6.128090 CCTCCGATCCATATGAATTGTTGATG 60.128 42.308 3.65 0.00 0.00 3.07
2242 2495 6.532826 TCCGATCCATATGAATTGTTGATGA 58.467 36.000 3.65 0.00 0.00 2.92
2243 2496 7.170277 TCCGATCCATATGAATTGTTGATGAT 58.830 34.615 3.65 0.00 0.00 2.45
2244 2497 7.666804 TCCGATCCATATGAATTGTTGATGATT 59.333 33.333 3.65 0.00 0.00 2.57
2245 2498 8.301720 CCGATCCATATGAATTGTTGATGATTT 58.698 33.333 3.65 0.00 0.00 2.17
2246 2499 9.338291 CGATCCATATGAATTGTTGATGATTTC 57.662 33.333 3.65 0.00 0.00 2.17
2271 2524 9.684448 TCTAAGTCATCGATCTAAATCATCAAC 57.316 33.333 0.00 0.00 31.76 3.18
2272 2525 9.468532 CTAAGTCATCGATCTAAATCATCAACA 57.531 33.333 0.00 0.00 31.76 3.33
2273 2526 8.722480 AAGTCATCGATCTAAATCATCAACAA 57.278 30.769 0.00 0.00 31.76 2.83
2274 2527 8.899427 AGTCATCGATCTAAATCATCAACAAT 57.101 30.769 0.00 0.00 31.76 2.71
2275 2528 9.334947 AGTCATCGATCTAAATCATCAACAATT 57.665 29.630 0.00 0.00 31.76 2.32
2290 2543 9.002600 TCATCAACAATTAATATGAATCGGAGG 57.997 33.333 0.00 0.00 0.00 4.30
2291 2544 7.744087 TCAACAATTAATATGAATCGGAGGG 57.256 36.000 0.00 0.00 0.00 4.30
2292 2545 7.513856 TCAACAATTAATATGAATCGGAGGGA 58.486 34.615 0.00 0.00 0.00 4.20
2293 2546 7.661437 TCAACAATTAATATGAATCGGAGGGAG 59.339 37.037 0.00 0.00 0.00 4.30
2294 2547 7.079451 ACAATTAATATGAATCGGAGGGAGT 57.921 36.000 0.00 0.00 0.00 3.85
2295 2548 8.202461 ACAATTAATATGAATCGGAGGGAGTA 57.798 34.615 0.00 0.00 0.00 2.59
2296 2549 8.314751 ACAATTAATATGAATCGGAGGGAGTAG 58.685 37.037 0.00 0.00 0.00 2.57
2297 2550 4.810191 AATATGAATCGGAGGGAGTAGC 57.190 45.455 0.00 0.00 0.00 3.58
2298 2551 2.088104 ATGAATCGGAGGGAGTAGCA 57.912 50.000 0.00 0.00 0.00 3.49
2299 2552 2.088104 TGAATCGGAGGGAGTAGCAT 57.912 50.000 0.00 0.00 0.00 3.79
2300 2553 2.398588 TGAATCGGAGGGAGTAGCATT 58.601 47.619 0.00 0.00 0.00 3.56
2301 2554 2.365617 TGAATCGGAGGGAGTAGCATTC 59.634 50.000 0.00 0.00 0.00 2.67
2302 2555 2.390225 ATCGGAGGGAGTAGCATTCT 57.610 50.000 0.00 0.00 0.00 2.40
2303 2556 2.160721 TCGGAGGGAGTAGCATTCTT 57.839 50.000 0.00 0.00 0.00 2.52
2304 2557 2.032620 TCGGAGGGAGTAGCATTCTTC 58.967 52.381 0.00 0.00 0.00 2.87
2305 2558 1.757118 CGGAGGGAGTAGCATTCTTCA 59.243 52.381 0.00 0.00 0.00 3.02
2306 2559 2.168521 CGGAGGGAGTAGCATTCTTCAA 59.831 50.000 0.00 0.00 0.00 2.69
2307 2560 3.536570 GGAGGGAGTAGCATTCTTCAAC 58.463 50.000 0.00 0.00 0.00 3.18
2308 2561 3.198853 GGAGGGAGTAGCATTCTTCAACT 59.801 47.826 0.00 0.00 0.00 3.16
2309 2562 4.406003 GGAGGGAGTAGCATTCTTCAACTA 59.594 45.833 0.00 0.00 0.00 2.24
2310 2563 5.104900 GGAGGGAGTAGCATTCTTCAACTAA 60.105 44.000 0.00 0.00 0.00 2.24
2311 2564 5.735766 AGGGAGTAGCATTCTTCAACTAAC 58.264 41.667 0.00 0.00 0.00 2.34
2312 2565 4.876679 GGGAGTAGCATTCTTCAACTAACC 59.123 45.833 0.00 0.00 0.00 2.85
2313 2566 4.567159 GGAGTAGCATTCTTCAACTAACCG 59.433 45.833 0.00 0.00 0.00 4.44
2314 2567 3.933332 AGTAGCATTCTTCAACTAACCGC 59.067 43.478 0.00 0.00 0.00 5.68
2315 2568 3.059352 AGCATTCTTCAACTAACCGCT 57.941 42.857 0.00 0.00 0.00 5.52
2316 2569 3.003480 AGCATTCTTCAACTAACCGCTC 58.997 45.455 0.00 0.00 0.00 5.03
2317 2570 2.096013 GCATTCTTCAACTAACCGCTCC 59.904 50.000 0.00 0.00 0.00 4.70
2318 2571 3.334691 CATTCTTCAACTAACCGCTCCA 58.665 45.455 0.00 0.00 0.00 3.86
2319 2572 3.695830 TTCTTCAACTAACCGCTCCAT 57.304 42.857 0.00 0.00 0.00 3.41
2320 2573 3.695830 TCTTCAACTAACCGCTCCATT 57.304 42.857 0.00 0.00 0.00 3.16
2321 2574 3.334691 TCTTCAACTAACCGCTCCATTG 58.665 45.455 0.00 0.00 0.00 2.82
2322 2575 2.851263 TCAACTAACCGCTCCATTGT 57.149 45.000 0.00 0.00 0.00 2.71
2323 2576 2.695359 TCAACTAACCGCTCCATTGTC 58.305 47.619 0.00 0.00 0.00 3.18
2324 2577 2.301870 TCAACTAACCGCTCCATTGTCT 59.698 45.455 0.00 0.00 0.00 3.41
2325 2578 3.074412 CAACTAACCGCTCCATTGTCTT 58.926 45.455 0.00 0.00 0.00 3.01
2326 2579 3.418684 ACTAACCGCTCCATTGTCTTT 57.581 42.857 0.00 0.00 0.00 2.52
2327 2580 3.335579 ACTAACCGCTCCATTGTCTTTC 58.664 45.455 0.00 0.00 0.00 2.62
2328 2581 1.156736 AACCGCTCCATTGTCTTTCG 58.843 50.000 0.00 0.00 0.00 3.46
2329 2582 0.034896 ACCGCTCCATTGTCTTTCGT 59.965 50.000 0.00 0.00 0.00 3.85
2330 2583 1.274167 ACCGCTCCATTGTCTTTCGTA 59.726 47.619 0.00 0.00 0.00 3.43
2331 2584 2.289195 ACCGCTCCATTGTCTTTCGTAA 60.289 45.455 0.00 0.00 0.00 3.18
2332 2585 2.936498 CCGCTCCATTGTCTTTCGTAAT 59.064 45.455 0.00 0.00 0.00 1.89
2333 2586 4.116961 CCGCTCCATTGTCTTTCGTAATA 58.883 43.478 0.00 0.00 0.00 0.98
2334 2587 4.209288 CCGCTCCATTGTCTTTCGTAATAG 59.791 45.833 0.00 0.00 0.00 1.73
2335 2588 4.318121 CGCTCCATTGTCTTTCGTAATAGC 60.318 45.833 0.00 0.00 0.00 2.97
2336 2589 4.570772 GCTCCATTGTCTTTCGTAATAGCA 59.429 41.667 0.00 0.00 0.00 3.49
2337 2590 5.064707 GCTCCATTGTCTTTCGTAATAGCAA 59.935 40.000 0.00 0.00 0.00 3.91
2338 2591 6.403200 GCTCCATTGTCTTTCGTAATAGCAAA 60.403 38.462 0.00 0.00 0.00 3.68
2339 2592 7.441890 TCCATTGTCTTTCGTAATAGCAAAA 57.558 32.000 0.00 0.00 0.00 2.44
2340 2593 7.877003 TCCATTGTCTTTCGTAATAGCAAAAA 58.123 30.769 0.00 0.00 0.00 1.94
2341 2594 8.519526 TCCATTGTCTTTCGTAATAGCAAAAAT 58.480 29.630 0.00 0.00 0.00 1.82
2342 2595 8.798153 CCATTGTCTTTCGTAATAGCAAAAATC 58.202 33.333 0.00 0.00 0.00 2.17
2343 2596 9.340695 CATTGTCTTTCGTAATAGCAAAAATCA 57.659 29.630 0.00 0.00 0.00 2.57
2345 2598 9.554724 TTGTCTTTCGTAATAGCAAAAATCATC 57.445 29.630 0.00 0.00 0.00 2.92
2346 2599 8.726068 TGTCTTTCGTAATAGCAAAAATCATCA 58.274 29.630 0.00 0.00 0.00 3.07
2347 2600 9.554724 GTCTTTCGTAATAGCAAAAATCATCAA 57.445 29.630 0.00 0.00 0.00 2.57
2348 2601 9.554724 TCTTTCGTAATAGCAAAAATCATCAAC 57.445 29.630 0.00 0.00 0.00 3.18
2349 2602 9.340695 CTTTCGTAATAGCAAAAATCATCAACA 57.659 29.630 0.00 0.00 0.00 3.33
2350 2603 9.684448 TTTCGTAATAGCAAAAATCATCAACAA 57.316 25.926 0.00 0.00 0.00 2.83
2351 2604 9.853555 TTCGTAATAGCAAAAATCATCAACAAT 57.146 25.926 0.00 0.00 0.00 2.71
2352 2605 9.853555 TCGTAATAGCAAAAATCATCAACAATT 57.146 25.926 0.00 0.00 0.00 2.32
2365 2618 9.519191 AATCATCAACAATTAATATGGATCGGA 57.481 29.630 0.00 0.00 0.00 4.55
2366 2619 8.552083 TCATCAACAATTAATATGGATCGGAG 57.448 34.615 0.00 0.00 0.00 4.63
2367 2620 7.607607 TCATCAACAATTAATATGGATCGGAGG 59.392 37.037 0.00 0.00 0.00 4.30
2368 2621 6.237901 TCAACAATTAATATGGATCGGAGGG 58.762 40.000 0.00 0.00 0.00 4.30
2395 2648 3.440522 GCATTCTTCAACTAACCACTCCC 59.559 47.826 0.00 0.00 0.00 4.30
2398 2651 4.351874 TCTTCAACTAACCACTCCCTTG 57.648 45.455 0.00 0.00 0.00 3.61
2405 2661 2.256117 AACCACTCCCTTGTCTTTCG 57.744 50.000 0.00 0.00 0.00 3.46
2409 2665 3.326880 ACCACTCCCTTGTCTTTCGTAAT 59.673 43.478 0.00 0.00 0.00 1.89
2422 2678 5.811100 GTCTTTCGTAATAGCAAAGGTAGCT 59.189 40.000 0.00 0.00 45.77 3.32
2464 2720 7.068593 TCTGAAGAAATTCAAGTGGTTGTCATT 59.931 33.333 0.00 0.00 34.98 2.57
2505 2761 1.623311 TGTCGATGACATGAAGGGTGT 59.377 47.619 0.00 0.00 37.67 4.16
2576 2832 6.170506 TCCTCGTGTATGCTAAAAATTCACT 58.829 36.000 0.00 0.00 0.00 3.41
2582 2838 7.803189 CGTGTATGCTAAAAATTCACTTTCACT 59.197 33.333 0.00 0.00 0.00 3.41
2750 3006 5.940470 GGATCAGAACAACAAGGTACATTCT 59.060 40.000 0.00 0.00 0.00 2.40
2827 3083 5.048083 TGCCATTTTACAGATTGACCACTTC 60.048 40.000 0.00 0.00 0.00 3.01
2845 3101 0.323999 TCGTGAAGATCTTCCCGGGA 60.324 55.000 31.09 22.63 40.09 5.14
2902 3158 2.629763 GCGTTCGCCGTCAAAACT 59.370 55.556 5.87 0.00 39.32 2.66
2909 3165 1.357334 GCCGTCAAAACTGCCGAAA 59.643 52.632 0.00 0.00 30.10 3.46
2911 3167 1.799548 GCCGTCAAAACTGCCGAAAAA 60.800 47.619 0.00 0.00 30.10 1.94
2997 3253 5.357314 TCCACGAATCTTAGAAACTCGATCT 59.643 40.000 15.29 0.00 33.81 2.75
3012 3268 4.220821 ACTCGATCTCTCCAAGCTGTTTTA 59.779 41.667 0.00 0.00 0.00 1.52
3021 3277 5.650266 TCTCCAAGCTGTTTTAAACAAGTCA 59.350 36.000 11.80 0.00 41.61 3.41
3036 3292 6.599356 AACAAGTCACCCTTTTAGTTTTGT 57.401 33.333 0.00 0.00 0.00 2.83
3038 3294 7.891498 ACAAGTCACCCTTTTAGTTTTGTAT 57.109 32.000 0.00 0.00 0.00 2.29
3040 3296 9.411189 ACAAGTCACCCTTTTAGTTTTGTATAA 57.589 29.630 0.00 0.00 0.00 0.98
3044 3300 9.550811 GTCACCCTTTTAGTTTTGTATAAATCG 57.449 33.333 0.00 0.00 0.00 3.34
3045 3301 9.504708 TCACCCTTTTAGTTTTGTATAAATCGA 57.495 29.630 0.00 0.00 0.00 3.59
3062 3318 5.622770 AATCGACGCCTTTTCATTAGTTT 57.377 34.783 0.00 0.00 0.00 2.66
3070 3326 8.026341 ACGCCTTTTCATTAGTTTAGAAGTAC 57.974 34.615 0.00 0.00 0.00 2.73
3112 3369 5.230726 GCCTTTCTGAATAAATTGCACATCG 59.769 40.000 0.00 0.00 0.00 3.84
3131 3388 1.399727 CGGTGCTGAACTTTTTAGGCG 60.400 52.381 0.00 0.00 0.00 5.52
3197 3454 7.671302 TCTAGTTTGATTCAGCTGTACTTTCT 58.329 34.615 14.67 8.14 0.00 2.52
3297 5874 2.146342 GTGGTGAATGGCGGATATGAG 58.854 52.381 0.00 0.00 0.00 2.90
3323 5900 5.545063 TTACAGATCAACAAGGTGTCTCA 57.455 39.130 0.00 0.00 0.00 3.27
3422 6544 7.672983 ATTACAGATTTACAAGGTGTCACAG 57.327 36.000 5.12 0.00 0.00 3.66
3429 6551 5.554822 TTACAAGGTGTCACAGACAAAAC 57.445 39.130 5.12 0.00 44.49 2.43
3523 6645 3.380637 AGACTACGACGGAATTGCTGTAT 59.619 43.478 0.00 0.00 35.85 2.29
3527 6649 2.267426 CGACGGAATTGCTGTATGACA 58.733 47.619 0.00 0.00 35.85 3.58
3539 6661 7.936496 TTGCTGTATGACATTAAGAATTCCA 57.064 32.000 0.65 0.00 0.00 3.53
3541 6663 8.523915 TGCTGTATGACATTAAGAATTCCATT 57.476 30.769 0.65 0.00 0.00 3.16
3542 6664 8.970020 TGCTGTATGACATTAAGAATTCCATTT 58.030 29.630 0.65 0.00 0.00 2.32
3604 6753 1.274703 GGAGATGAGAGGGGGTGCAA 61.275 60.000 0.00 0.00 0.00 4.08
3624 6773 2.270205 CTGGCGGCATCTCCAACT 59.730 61.111 13.85 0.00 34.01 3.16
3625 6774 1.377725 CTGGCGGCATCTCCAACTT 60.378 57.895 13.85 0.00 34.01 2.66
3663 6812 1.607467 GGAGGCCCAGCACATTTGT 60.607 57.895 0.00 0.00 0.00 2.83
3683 6832 1.098712 TGTGGGAGAAACAACCGTGC 61.099 55.000 0.00 0.00 0.00 5.34
3712 6861 2.585153 GCTCCCTTCCGTCTTCCC 59.415 66.667 0.00 0.00 0.00 3.97
3731 7091 4.150454 CTCTCCGCCTCCCCCTCT 62.150 72.222 0.00 0.00 0.00 3.69
3732 7092 4.465446 TCTCCGCCTCCCCCTCTG 62.465 72.222 0.00 0.00 0.00 3.35
3736 7096 4.479993 CGCCTCCCCCTCTGCTTG 62.480 72.222 0.00 0.00 0.00 4.01
3737 7097 3.011517 GCCTCCCCCTCTGCTTGA 61.012 66.667 0.00 0.00 0.00 3.02
3746 7106 1.403514 CCCTCTGCTTGAGAGTCGTTC 60.404 57.143 8.51 0.00 46.30 3.95
3753 7113 2.545952 GCTTGAGAGTCGTTCAGGACAA 60.546 50.000 2.69 0.00 39.42 3.18
3755 7115 2.028876 TGAGAGTCGTTCAGGACAACA 58.971 47.619 2.69 0.00 39.42 3.33
3760 7120 0.176219 TCGTTCAGGACAACACGGTT 59.824 50.000 0.00 0.00 33.39 4.44
3761 7121 1.011333 CGTTCAGGACAACACGGTTT 58.989 50.000 0.00 0.00 0.00 3.27
3763 7123 2.011222 GTTCAGGACAACACGGTTTGA 58.989 47.619 5.37 0.00 0.00 2.69
3765 7125 2.489971 TCAGGACAACACGGTTTGATC 58.510 47.619 5.37 0.00 0.00 2.92
3766 7126 1.535462 CAGGACAACACGGTTTGATCC 59.465 52.381 5.37 8.01 31.78 3.36
3767 7127 0.879090 GGACAACACGGTTTGATCCC 59.121 55.000 5.37 0.96 0.00 3.85
3768 7128 1.600023 GACAACACGGTTTGATCCCA 58.400 50.000 5.37 0.00 0.00 4.37
3769 7129 2.159382 GACAACACGGTTTGATCCCAT 58.841 47.619 5.37 0.00 0.00 4.00
3770 7130 3.340034 GACAACACGGTTTGATCCCATA 58.660 45.455 5.37 0.00 0.00 2.74
3771 7131 3.945285 GACAACACGGTTTGATCCCATAT 59.055 43.478 5.37 0.00 0.00 1.78
3773 7133 4.879545 ACAACACGGTTTGATCCCATATAC 59.120 41.667 5.37 0.00 0.00 1.47
3774 7134 4.764050 ACACGGTTTGATCCCATATACA 57.236 40.909 0.00 0.00 0.00 2.29
3780 7142 4.625742 GGTTTGATCCCATATACATCGTCG 59.374 45.833 0.00 0.00 0.00 5.12
3801 7163 0.179108 ACGGCGATGGCTAAAGAGAC 60.179 55.000 16.62 0.00 39.81 3.36
3817 7179 1.139095 GACGCGTTCGGAATCTCCT 59.861 57.895 15.53 0.00 40.69 3.69
3826 7188 6.154445 GCGTTCGGAATCTCCTTGTATATAA 58.846 40.000 0.00 0.00 33.30 0.98
3829 7191 7.218393 CGTTCGGAATCTCCTTGTATATAATCG 59.782 40.741 0.00 0.00 33.30 3.34
3854 7216 2.730094 GTTGGCCAGGTGTTGCTG 59.270 61.111 5.11 0.00 0.00 4.41
3863 7225 1.102978 AGGTGTTGCTGTTTGGTGTC 58.897 50.000 0.00 0.00 0.00 3.67
3871 7233 1.333619 GCTGTTTGGTGTCATGTCGTT 59.666 47.619 0.00 0.00 0.00 3.85
3886 7248 1.603455 CGTTGGGATGCCAACCACT 60.603 57.895 35.01 0.00 44.90 4.00
3902 7264 0.243907 CACTAGAGTGGTGGTGGTCG 59.756 60.000 0.00 0.00 42.10 4.79
3905 7267 1.239296 TAGAGTGGTGGTGGTCGTCG 61.239 60.000 0.00 0.00 0.00 5.12
3906 7268 4.295119 AGTGGTGGTGGTCGTCGC 62.295 66.667 0.00 0.00 0.00 5.19
3911 7273 3.228017 TGGTGGTCGTCGCCTTCA 61.228 61.111 11.14 3.50 46.01 3.02
3912 7274 2.264794 GGTGGTCGTCGCCTTCAT 59.735 61.111 7.14 0.00 42.62 2.57
3915 7277 0.389948 GTGGTCGTCGCCTTCATCTT 60.390 55.000 7.14 0.00 0.00 2.40
3948 7310 0.037232 GAGGGAAGTGGAAGGTGTCG 60.037 60.000 0.00 0.00 0.00 4.35
3979 7341 1.680338 ATTCCCCTCAATAAGCACGC 58.320 50.000 0.00 0.00 0.00 5.34
3980 7342 0.742990 TTCCCCTCAATAAGCACGCG 60.743 55.000 3.53 3.53 0.00 6.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
256 258 2.760385 GGAGGTAGCTGCGTCCCT 60.760 66.667 27.35 10.68 37.43 4.20
382 385 2.158957 ACCGTCACAAGCAAGAGAAAGA 60.159 45.455 0.00 0.00 0.00 2.52
443 446 4.037446 CCTTATCTCTTCCTTCGTCTCCAG 59.963 50.000 0.00 0.00 0.00 3.86
444 447 3.954904 CCTTATCTCTTCCTTCGTCTCCA 59.045 47.826 0.00 0.00 0.00 3.86
480 484 1.228429 CCGACCCCACACACCATTT 60.228 57.895 0.00 0.00 0.00 2.32
483 487 3.552384 GTCCGACCCCACACACCA 61.552 66.667 0.00 0.00 0.00 4.17
530 534 0.392998 AGCCGGATGATTTTCACGCT 60.393 50.000 5.05 0.00 0.00 5.07
586 590 6.094464 GCCGATACAAGGTGTTAAATAAACCT 59.906 38.462 0.00 0.00 46.40 3.50
587 591 6.094464 AGCCGATACAAGGTGTTAAATAAACC 59.906 38.462 0.00 0.00 37.27 3.27
588 592 6.964934 CAGCCGATACAAGGTGTTAAATAAAC 59.035 38.462 0.00 0.00 38.67 2.01
589 593 6.655848 ACAGCCGATACAAGGTGTTAAATAAA 59.344 34.615 0.00 0.00 0.00 1.40
590 594 6.092944 CACAGCCGATACAAGGTGTTAAATAA 59.907 38.462 0.00 0.00 0.00 1.40
591 595 5.583061 CACAGCCGATACAAGGTGTTAAATA 59.417 40.000 0.00 0.00 0.00 1.40
592 596 4.394920 CACAGCCGATACAAGGTGTTAAAT 59.605 41.667 0.00 0.00 0.00 1.40
593 597 3.749088 CACAGCCGATACAAGGTGTTAAA 59.251 43.478 0.00 0.00 0.00 1.52
594 598 3.331150 CACAGCCGATACAAGGTGTTAA 58.669 45.455 0.00 0.00 0.00 2.01
595 599 2.933492 GCACAGCCGATACAAGGTGTTA 60.933 50.000 0.00 0.00 0.00 2.41
596 600 1.808411 CACAGCCGATACAAGGTGTT 58.192 50.000 0.00 0.00 0.00 3.32
597 601 0.673644 GCACAGCCGATACAAGGTGT 60.674 55.000 0.00 0.00 0.00 4.16
598 602 1.695893 CGCACAGCCGATACAAGGTG 61.696 60.000 0.00 0.00 0.00 4.00
599 603 1.447838 CGCACAGCCGATACAAGGT 60.448 57.895 0.00 0.00 0.00 3.50
600 604 1.153647 TCGCACAGCCGATACAAGG 60.154 57.895 0.00 0.00 31.36 3.61
601 605 1.742900 CGTCGCACAGCCGATACAAG 61.743 60.000 0.00 0.00 39.67 3.16
602 606 1.803922 CGTCGCACAGCCGATACAA 60.804 57.895 0.00 0.00 39.67 2.41
603 607 2.202557 CGTCGCACAGCCGATACA 60.203 61.111 0.00 0.00 39.67 2.29
604 608 0.523968 TAACGTCGCACAGCCGATAC 60.524 55.000 0.00 0.00 39.67 2.24
605 609 0.382873 ATAACGTCGCACAGCCGATA 59.617 50.000 0.00 0.00 39.67 2.92
606 610 0.459585 AATAACGTCGCACAGCCGAT 60.460 50.000 0.00 0.00 39.67 4.18
607 611 0.668096 AAATAACGTCGCACAGCCGA 60.668 50.000 0.00 0.00 34.40 5.54
608 612 0.993532 TAAATAACGTCGCACAGCCG 59.006 50.000 0.00 0.00 0.00 5.52
609 613 2.605818 TCATAAATAACGTCGCACAGCC 59.394 45.455 0.00 0.00 0.00 4.85
610 614 3.918258 TCATAAATAACGTCGCACAGC 57.082 42.857 0.00 0.00 0.00 4.40
611 615 4.263800 GCTTCATAAATAACGTCGCACAG 58.736 43.478 0.00 0.00 0.00 3.66
612 616 3.241836 CGCTTCATAAATAACGTCGCACA 60.242 43.478 0.00 0.00 0.00 4.57
613 617 3.269310 CGCTTCATAAATAACGTCGCAC 58.731 45.455 0.00 0.00 0.00 5.34
614 618 2.283086 CCGCTTCATAAATAACGTCGCA 59.717 45.455 0.00 0.00 0.00 5.10
615 619 2.348218 CCCGCTTCATAAATAACGTCGC 60.348 50.000 0.00 0.00 0.00 5.19
616 620 2.861935 ACCCGCTTCATAAATAACGTCG 59.138 45.455 0.00 0.00 0.00 5.12
617 621 3.866910 TCACCCGCTTCATAAATAACGTC 59.133 43.478 0.00 0.00 0.00 4.34
618 622 3.864243 TCACCCGCTTCATAAATAACGT 58.136 40.909 0.00 0.00 0.00 3.99
619 623 4.868450 TTCACCCGCTTCATAAATAACG 57.132 40.909 0.00 0.00 0.00 3.18
620 624 6.027749 CACTTTCACCCGCTTCATAAATAAC 58.972 40.000 0.00 0.00 0.00 1.89
621 625 5.941058 TCACTTTCACCCGCTTCATAAATAA 59.059 36.000 0.00 0.00 0.00 1.40
622 626 5.492895 TCACTTTCACCCGCTTCATAAATA 58.507 37.500 0.00 0.00 0.00 1.40
623 627 4.331968 TCACTTTCACCCGCTTCATAAAT 58.668 39.130 0.00 0.00 0.00 1.40
624 628 3.745799 TCACTTTCACCCGCTTCATAAA 58.254 40.909 0.00 0.00 0.00 1.40
625 629 3.410631 TCACTTTCACCCGCTTCATAA 57.589 42.857 0.00 0.00 0.00 1.90
626 630 3.071479 GTTCACTTTCACCCGCTTCATA 58.929 45.455 0.00 0.00 0.00 2.15
627 631 1.880027 GTTCACTTTCACCCGCTTCAT 59.120 47.619 0.00 0.00 0.00 2.57
628 632 1.305201 GTTCACTTTCACCCGCTTCA 58.695 50.000 0.00 0.00 0.00 3.02
629 633 0.234884 CGTTCACTTTCACCCGCTTC 59.765 55.000 0.00 0.00 0.00 3.86
630 634 1.782028 GCGTTCACTTTCACCCGCTT 61.782 55.000 0.00 0.00 38.22 4.68
631 635 2.251642 GCGTTCACTTTCACCCGCT 61.252 57.895 0.00 0.00 38.22 5.52
632 636 2.054140 TTGCGTTCACTTTCACCCGC 62.054 55.000 0.00 0.00 41.34 6.13
633 637 0.316689 GTTGCGTTCACTTTCACCCG 60.317 55.000 0.00 0.00 0.00 5.28
634 638 0.030235 GGTTGCGTTCACTTTCACCC 59.970 55.000 0.00 0.00 0.00 4.61
635 639 0.316689 CGGTTGCGTTCACTTTCACC 60.317 55.000 0.00 0.00 0.00 4.02
636 640 0.653636 TCGGTTGCGTTCACTTTCAC 59.346 50.000 0.00 0.00 0.00 3.18
637 641 1.062880 GTTCGGTTGCGTTCACTTTCA 59.937 47.619 0.00 0.00 0.00 2.69
638 642 1.329599 AGTTCGGTTGCGTTCACTTTC 59.670 47.619 0.00 0.00 0.00 2.62
639 643 1.063469 CAGTTCGGTTGCGTTCACTTT 59.937 47.619 0.00 0.00 0.00 2.66
640 644 0.655733 CAGTTCGGTTGCGTTCACTT 59.344 50.000 0.00 0.00 0.00 3.16
641 645 0.461339 ACAGTTCGGTTGCGTTCACT 60.461 50.000 0.00 0.00 0.00 3.41
642 646 0.315869 CACAGTTCGGTTGCGTTCAC 60.316 55.000 0.00 0.00 0.00 3.18
643 647 2.010670 CACAGTTCGGTTGCGTTCA 58.989 52.632 0.00 0.00 0.00 3.18
644 648 1.368850 GCACAGTTCGGTTGCGTTC 60.369 57.895 0.00 0.00 0.00 3.95
645 649 2.713154 GCACAGTTCGGTTGCGTT 59.287 55.556 0.00 0.00 0.00 4.84
646 650 3.636043 CGCACAGTTCGGTTGCGT 61.636 61.111 7.02 0.00 43.00 5.24
648 652 2.248431 GTCGCACAGTTCGGTTGC 59.752 61.111 0.00 0.00 0.00 4.17
649 653 1.758319 AACGTCGCACAGTTCGGTTG 61.758 55.000 0.00 0.00 0.00 3.77
650 654 0.248990 TAACGTCGCACAGTTCGGTT 60.249 50.000 0.00 0.00 0.00 4.44
651 655 0.038892 ATAACGTCGCACAGTTCGGT 60.039 50.000 0.00 0.00 0.00 4.69
652 656 1.065358 AATAACGTCGCACAGTTCGG 58.935 50.000 0.00 0.00 0.00 4.30
653 657 3.834302 CATAATAACGTCGCACAGTTCG 58.166 45.455 0.00 0.00 0.00 3.95
654 658 3.061563 TGCATAATAACGTCGCACAGTTC 59.938 43.478 0.00 0.00 0.00 3.01
655 659 2.997303 TGCATAATAACGTCGCACAGTT 59.003 40.909 0.00 0.00 0.00 3.16
656 660 2.612604 TGCATAATAACGTCGCACAGT 58.387 42.857 0.00 0.00 0.00 3.55
657 661 3.649870 TTGCATAATAACGTCGCACAG 57.350 42.857 0.00 0.00 31.10 3.66
658 662 4.399112 CTTTTGCATAATAACGTCGCACA 58.601 39.130 0.00 0.00 31.10 4.57
659 663 3.237433 GCTTTTGCATAATAACGTCGCAC 59.763 43.478 0.00 0.00 46.58 5.34
660 664 3.421741 GCTTTTGCATAATAACGTCGCA 58.578 40.909 0.00 0.00 46.58 5.10
680 684 3.280532 CTGATTGTTCAGCGAACGC 57.719 52.632 11.31 11.31 44.55 4.84
688 692 3.254629 GCCAGAGGCTGATTGTTCA 57.745 52.632 0.00 0.00 46.69 3.18
699 703 1.761784 ACTGAGATAAGCAGCCAGAGG 59.238 52.381 0.00 0.00 36.86 3.69
700 704 4.619973 CTTACTGAGATAAGCAGCCAGAG 58.380 47.826 0.00 0.00 36.86 3.35
701 705 4.662468 CTTACTGAGATAAGCAGCCAGA 57.338 45.455 0.00 0.00 36.86 3.86
709 713 6.127479 ACTGAGAGTTGGCTTACTGAGATAAG 60.127 42.308 0.00 0.00 35.59 1.73
710 714 5.717178 ACTGAGAGTTGGCTTACTGAGATAA 59.283 40.000 0.00 0.00 0.00 1.75
711 715 5.265191 ACTGAGAGTTGGCTTACTGAGATA 58.735 41.667 0.00 0.00 0.00 1.98
712 716 4.093011 ACTGAGAGTTGGCTTACTGAGAT 58.907 43.478 0.00 0.00 0.00 2.75
713 717 3.501349 ACTGAGAGTTGGCTTACTGAGA 58.499 45.455 0.00 0.00 0.00 3.27
714 718 3.256879 TGACTGAGAGTTGGCTTACTGAG 59.743 47.826 0.00 0.00 0.00 3.35
715 719 3.005897 GTGACTGAGAGTTGGCTTACTGA 59.994 47.826 0.00 0.00 0.00 3.41
716 720 3.243873 TGTGACTGAGAGTTGGCTTACTG 60.244 47.826 0.00 0.00 0.00 2.74
717 721 2.965831 TGTGACTGAGAGTTGGCTTACT 59.034 45.455 0.00 0.00 0.00 2.24
718 722 3.386768 TGTGACTGAGAGTTGGCTTAC 57.613 47.619 0.00 0.00 0.00 2.34
719 723 3.834813 AGATGTGACTGAGAGTTGGCTTA 59.165 43.478 0.00 0.00 0.00 3.09
720 724 2.636893 AGATGTGACTGAGAGTTGGCTT 59.363 45.455 0.00 0.00 0.00 4.35
721 725 2.255406 AGATGTGACTGAGAGTTGGCT 58.745 47.619 0.00 0.00 0.00 4.75
722 726 2.758736 AGATGTGACTGAGAGTTGGC 57.241 50.000 0.00 0.00 0.00 4.52
723 727 5.105187 TCCATTAGATGTGACTGAGAGTTGG 60.105 44.000 0.00 0.00 0.00 3.77
724 728 5.970592 TCCATTAGATGTGACTGAGAGTTG 58.029 41.667 0.00 0.00 0.00 3.16
725 729 6.402222 GTTCCATTAGATGTGACTGAGAGTT 58.598 40.000 0.00 0.00 0.00 3.01
726 730 5.393569 CGTTCCATTAGATGTGACTGAGAGT 60.394 44.000 0.00 0.00 0.00 3.24
727 731 5.039984 CGTTCCATTAGATGTGACTGAGAG 58.960 45.833 0.00 0.00 0.00 3.20
728 732 4.678044 GCGTTCCATTAGATGTGACTGAGA 60.678 45.833 0.00 0.00 0.00 3.27
729 733 3.553511 GCGTTCCATTAGATGTGACTGAG 59.446 47.826 0.00 0.00 0.00 3.35
730 734 3.056179 TGCGTTCCATTAGATGTGACTGA 60.056 43.478 0.00 0.00 0.00 3.41
731 735 3.261580 TGCGTTCCATTAGATGTGACTG 58.738 45.455 0.00 0.00 0.00 3.51
732 736 3.610040 TGCGTTCCATTAGATGTGACT 57.390 42.857 0.00 0.00 0.00 3.41
733 737 3.181510 GGTTGCGTTCCATTAGATGTGAC 60.182 47.826 0.00 0.00 0.00 3.67
734 738 3.006940 GGTTGCGTTCCATTAGATGTGA 58.993 45.455 0.00 0.00 0.00 3.58
735 739 2.223021 CGGTTGCGTTCCATTAGATGTG 60.223 50.000 0.00 0.00 0.00 3.21
736 740 2.006888 CGGTTGCGTTCCATTAGATGT 58.993 47.619 0.00 0.00 0.00 3.06
737 741 2.276201 TCGGTTGCGTTCCATTAGATG 58.724 47.619 0.00 0.00 0.00 2.90
738 742 2.676342 GTTCGGTTGCGTTCCATTAGAT 59.324 45.455 0.00 0.00 0.00 1.98
739 743 2.070783 GTTCGGTTGCGTTCCATTAGA 58.929 47.619 0.00 0.00 0.00 2.10
740 744 2.073816 AGTTCGGTTGCGTTCCATTAG 58.926 47.619 0.00 0.00 0.00 1.73
741 745 1.801771 CAGTTCGGTTGCGTTCCATTA 59.198 47.619 0.00 0.00 0.00 1.90
742 746 0.591170 CAGTTCGGTTGCGTTCCATT 59.409 50.000 0.00 0.00 0.00 3.16
743 747 0.250124 TCAGTTCGGTTGCGTTCCAT 60.250 50.000 0.00 0.00 0.00 3.41
744 748 0.462225 TTCAGTTCGGTTGCGTTCCA 60.462 50.000 0.00 0.00 0.00 3.53
745 749 0.041576 GTTCAGTTCGGTTGCGTTCC 60.042 55.000 0.00 0.00 0.00 3.62
746 750 0.653636 TGTTCAGTTCGGTTGCGTTC 59.346 50.000 0.00 0.00 0.00 3.95
747 751 1.088306 TTGTTCAGTTCGGTTGCGTT 58.912 45.000 0.00 0.00 0.00 4.84
748 752 1.063469 CTTTGTTCAGTTCGGTTGCGT 59.937 47.619 0.00 0.00 0.00 5.24
749 753 1.063469 ACTTTGTTCAGTTCGGTTGCG 59.937 47.619 0.00 0.00 0.00 4.85
750 754 2.844122 ACTTTGTTCAGTTCGGTTGC 57.156 45.000 0.00 0.00 0.00 4.17
751 755 5.418310 ACATACTTTGTTCAGTTCGGTTG 57.582 39.130 0.00 0.00 33.74 3.77
763 767 3.472652 TGGTCGAGCAAACATACTTTGT 58.527 40.909 16.20 0.00 41.53 2.83
764 768 4.406069 CATGGTCGAGCAAACATACTTTG 58.594 43.478 22.64 8.01 0.00 2.77
765 769 3.440173 CCATGGTCGAGCAAACATACTTT 59.560 43.478 22.64 0.00 0.00 2.66
766 770 3.009723 CCATGGTCGAGCAAACATACTT 58.990 45.455 22.64 0.00 0.00 2.24
767 771 2.632377 CCATGGTCGAGCAAACATACT 58.368 47.619 22.64 0.00 0.00 2.12
768 772 1.064060 GCCATGGTCGAGCAAACATAC 59.936 52.381 22.64 4.65 0.00 2.39
769 773 1.378531 GCCATGGTCGAGCAAACATA 58.621 50.000 22.64 0.00 0.00 2.29
770 774 1.647545 CGCCATGGTCGAGCAAACAT 61.648 55.000 22.64 1.34 0.00 2.71
771 775 2.324330 CGCCATGGTCGAGCAAACA 61.324 57.895 22.64 0.00 0.00 2.83
772 776 1.017177 TACGCCATGGTCGAGCAAAC 61.017 55.000 27.68 12.57 0.00 2.93
773 777 1.017177 GTACGCCATGGTCGAGCAAA 61.017 55.000 27.68 0.00 0.00 3.68
774 778 1.447140 GTACGCCATGGTCGAGCAA 60.447 57.895 27.68 5.27 0.00 3.91
775 779 2.183300 GTACGCCATGGTCGAGCA 59.817 61.111 27.68 21.02 0.00 4.26
776 780 2.954868 CGTACGCCATGGTCGAGC 60.955 66.667 27.68 19.31 0.00 5.03
777 781 1.872234 CACGTACGCCATGGTCGAG 60.872 63.158 27.68 20.63 0.00 4.04
778 782 2.179767 CACGTACGCCATGGTCGA 59.820 61.111 27.68 13.35 0.00 4.20
779 783 2.883730 CCACGTACGCCATGGTCG 60.884 66.667 21.83 21.83 0.00 4.79
780 784 3.192922 GCCACGTACGCCATGGTC 61.193 66.667 20.57 11.71 35.79 4.02
781 785 4.770874 GGCCACGTACGCCATGGT 62.771 66.667 20.57 0.00 46.27 3.55
805 809 2.601628 TATCCACACGCCGCTACACG 62.602 60.000 0.00 0.00 43.15 4.49
806 810 0.249322 ATATCCACACGCCGCTACAC 60.249 55.000 0.00 0.00 0.00 2.90
807 811 0.031585 GATATCCACACGCCGCTACA 59.968 55.000 0.00 0.00 0.00 2.74
808 812 0.314302 AGATATCCACACGCCGCTAC 59.686 55.000 0.00 0.00 0.00 3.58
809 813 1.037493 AAGATATCCACACGCCGCTA 58.963 50.000 0.00 0.00 0.00 4.26
810 814 0.178068 AAAGATATCCACACGCCGCT 59.822 50.000 0.00 0.00 0.00 5.52
811 815 0.304705 CAAAGATATCCACACGCCGC 59.695 55.000 0.00 0.00 0.00 6.53
812 816 1.651987 ACAAAGATATCCACACGCCG 58.348 50.000 0.00 0.00 0.00 6.46
813 817 3.793559 AGTACAAAGATATCCACACGCC 58.206 45.455 0.00 0.00 0.00 5.68
814 818 5.459107 CAGTAGTACAAAGATATCCACACGC 59.541 44.000 2.52 0.00 0.00 5.34
815 819 5.459107 GCAGTAGTACAAAGATATCCACACG 59.541 44.000 2.52 0.00 0.00 4.49
816 820 6.477033 CAGCAGTAGTACAAAGATATCCACAC 59.523 42.308 2.52 0.00 0.00 3.82
817 821 6.573434 CAGCAGTAGTACAAAGATATCCACA 58.427 40.000 2.52 0.00 0.00 4.17
818 822 5.463724 GCAGCAGTAGTACAAAGATATCCAC 59.536 44.000 2.52 0.00 0.00 4.02
819 823 5.453339 GGCAGCAGTAGTACAAAGATATCCA 60.453 44.000 2.52 0.00 0.00 3.41
820 824 4.991687 GGCAGCAGTAGTACAAAGATATCC 59.008 45.833 2.52 0.00 0.00 2.59
821 825 5.848406 AGGCAGCAGTAGTACAAAGATATC 58.152 41.667 2.52 0.00 0.00 1.63
822 826 5.508153 CGAGGCAGCAGTAGTACAAAGATAT 60.508 44.000 2.52 0.00 0.00 1.63
823 827 4.202020 CGAGGCAGCAGTAGTACAAAGATA 60.202 45.833 2.52 0.00 0.00 1.98
824 828 3.429547 CGAGGCAGCAGTAGTACAAAGAT 60.430 47.826 2.52 0.00 0.00 2.40
825 829 2.094700 CGAGGCAGCAGTAGTACAAAGA 60.095 50.000 2.52 0.00 0.00 2.52
826 830 2.263077 CGAGGCAGCAGTAGTACAAAG 58.737 52.381 2.52 0.00 0.00 2.77
827 831 1.671850 GCGAGGCAGCAGTAGTACAAA 60.672 52.381 2.52 0.00 37.05 2.83
828 832 0.108804 GCGAGGCAGCAGTAGTACAA 60.109 55.000 2.52 0.00 37.05 2.41
829 833 1.511305 GCGAGGCAGCAGTAGTACA 59.489 57.895 2.52 0.00 37.05 2.90
830 834 1.227002 GGCGAGGCAGCAGTAGTAC 60.227 63.158 7.25 0.00 39.27 2.73
831 835 2.423898 GGGCGAGGCAGCAGTAGTA 61.424 63.158 7.25 0.00 39.27 1.82
832 836 3.775654 GGGCGAGGCAGCAGTAGT 61.776 66.667 7.25 0.00 39.27 2.73
833 837 3.438017 GAGGGCGAGGCAGCAGTAG 62.438 68.421 7.25 0.00 39.27 2.57
834 838 3.461773 GAGGGCGAGGCAGCAGTA 61.462 66.667 7.25 0.00 39.27 2.74
847 851 1.003233 GGTTTATATGGAGCGGGAGGG 59.997 57.143 0.00 0.00 0.00 4.30
866 870 3.267860 GGCATTGCTCGCTCGAGG 61.268 66.667 15.58 4.50 42.19 4.63
880 884 3.372730 GCCAGGAAATGTGCGGCA 61.373 61.111 0.00 0.00 42.50 5.69
891 895 4.662961 CAGTGTGTCGCGCCAGGA 62.663 66.667 0.00 0.00 0.00 3.86
907 913 2.047274 GGGAGCGCTTGTACTGCA 60.047 61.111 13.26 0.00 0.00 4.41
908 914 3.188786 CGGGAGCGCTTGTACTGC 61.189 66.667 13.26 0.00 0.00 4.40
1034 1040 3.160748 GGAGGAGGAGGAGGCAGC 61.161 72.222 0.00 0.00 0.00 5.25
1040 1046 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
1041 1047 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
1042 1048 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
1043 1049 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
1044 1050 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
1045 1051 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
1290 1301 1.448013 GCTAAGTGGCCTCGGTGAC 60.448 63.158 3.32 0.00 0.00 3.67
1299 1310 1.648467 CCTTCGGCTTGCTAAGTGGC 61.648 60.000 0.00 0.00 0.00 5.01
1311 1326 0.319641 AACAGAGACGTTCCTTCGGC 60.320 55.000 0.00 0.00 39.37 5.54
1331 1346 2.419324 GAGTCACGTACACTGGAGTAGG 59.581 54.545 4.11 0.00 36.29 3.18
1412 1455 3.698539 TCAAGTCAATCAAACAGTGGCAA 59.301 39.130 0.00 0.00 0.00 4.52
1418 1461 6.473455 GTGGTTCTTTCAAGTCAATCAAACAG 59.527 38.462 0.00 0.00 0.00 3.16
1440 1483 6.044682 AGAAACAATTTGAAGCAGAAAGTGG 58.955 36.000 2.79 0.00 33.70 4.00
1443 1488 6.640092 GGAGAGAAACAATTTGAAGCAGAAAG 59.360 38.462 2.79 0.00 0.00 2.62
1467 1512 6.250089 GCAGAATGAAACAAAACAAGTTTGG 58.750 36.000 0.00 0.00 45.20 3.28
1472 1517 4.025480 GCAGGCAGAATGAAACAAAACAAG 60.025 41.667 0.00 0.00 39.69 3.16
1487 1532 2.574006 AACTCAAGAATGCAGGCAGA 57.426 45.000 0.00 0.00 0.00 4.26
1514 1559 1.911293 TTCATTCGCCTCGCACAAGC 61.911 55.000 0.00 0.00 37.42 4.01
1520 1565 3.398954 TGTTAAATTCATTCGCCTCGC 57.601 42.857 0.00 0.00 0.00 5.03
1521 1566 5.227805 CACATTGTTAAATTCATTCGCCTCG 59.772 40.000 0.00 0.00 0.00 4.63
1526 1571 7.007009 CGGTACACACATTGTTAAATTCATTCG 59.993 37.037 0.00 0.00 39.91 3.34
1534 1579 4.634883 ACACACGGTACACACATTGTTAAA 59.365 37.500 0.00 0.00 39.91 1.52
1540 1585 2.319136 ACACACACGGTACACACATT 57.681 45.000 0.00 0.00 0.00 2.71
1542 1587 1.642728 GAACACACACGGTACACACA 58.357 50.000 0.00 0.00 0.00 3.72
1543 1588 0.932399 GGAACACACACGGTACACAC 59.068 55.000 0.00 0.00 0.00 3.82
1547 1592 1.223187 CTTGGGAACACACACGGTAC 58.777 55.000 0.00 0.00 42.67 3.34
1550 1595 0.464735 TTCCTTGGGAACACACACGG 60.465 55.000 0.00 0.00 42.67 4.94
1552 1597 3.550030 CGATTTTCCTTGGGAACACACAC 60.550 47.826 0.00 0.00 41.87 3.82
1553 1598 2.621055 CGATTTTCCTTGGGAACACACA 59.379 45.455 0.00 0.00 41.87 3.72
1554 1599 2.607038 GCGATTTTCCTTGGGAACACAC 60.607 50.000 0.00 0.00 41.87 3.82
1560 1605 0.254747 ATCCGCGATTTTCCTTGGGA 59.745 50.000 8.23 0.00 0.00 4.37
1579 1624 0.839277 ATCCATCATCCGCAACCTGA 59.161 50.000 0.00 0.00 0.00 3.86
1588 1633 3.393800 CACGACCAAGTATCCATCATCC 58.606 50.000 0.00 0.00 0.00 3.51
1681 1726 0.246635 ATGAACGAACCGGAGAGTGG 59.753 55.000 9.46 0.00 0.00 4.00
1705 1750 6.128282 ACAATACAACAAGCAGGATAAGAACG 60.128 38.462 0.00 0.00 0.00 3.95
1706 1751 7.145932 ACAATACAACAAGCAGGATAAGAAC 57.854 36.000 0.00 0.00 0.00 3.01
1770 1815 3.316868 GGAGAGCGCTAGAGTTTCAGTAT 59.683 47.826 11.50 0.00 0.00 2.12
1798 1843 5.738909 AGTGGTCTGCATATCCATTATAGC 58.261 41.667 7.68 0.00 33.68 2.97
1854 1899 9.359653 TGGAGAGAGAATTTCATCTTTTTCTTT 57.640 29.630 0.00 0.00 0.00 2.52
1855 1900 8.930846 TGGAGAGAGAATTTCATCTTTTTCTT 57.069 30.769 0.00 0.00 0.00 2.52
1856 1901 7.121020 GCTGGAGAGAGAATTTCATCTTTTTCT 59.879 37.037 0.00 0.00 0.00 2.52
1857 1902 7.094463 TGCTGGAGAGAGAATTTCATCTTTTTC 60.094 37.037 0.00 0.62 0.00 2.29
1917 1962 4.781087 AGTTAAGTGTGGTAGATGCCCTTA 59.219 41.667 0.00 0.00 0.00 2.69
1920 1965 3.270877 CAGTTAAGTGTGGTAGATGCCC 58.729 50.000 1.85 0.00 0.00 5.36
1929 1974 7.447374 TCCATGAAAATACAGTTAAGTGTGG 57.553 36.000 23.41 14.15 31.46 4.17
1948 1993 7.988737 TCTTATGATTAAGTGTGCTTTCCATG 58.011 34.615 0.00 0.00 36.87 3.66
1952 2025 8.801913 GCATTTCTTATGATTAAGTGTGCTTTC 58.198 33.333 0.00 0.00 36.45 2.62
1956 2029 6.197842 GCAGCATTTCTTATGATTAAGTGTGC 59.802 38.462 0.00 0.00 37.80 4.57
1960 2033 6.320672 AGCTGCAGCATTTCTTATGATTAAGT 59.679 34.615 38.24 10.02 45.16 2.24
2028 2101 7.360438 GCAACGAACAAGAGAGAAATCAGTATT 60.360 37.037 0.00 0.00 0.00 1.89
2029 2102 6.091441 GCAACGAACAAGAGAGAAATCAGTAT 59.909 38.462 0.00 0.00 0.00 2.12
2034 2107 4.212214 ACAGCAACGAACAAGAGAGAAATC 59.788 41.667 0.00 0.00 0.00 2.17
2035 2288 4.130118 ACAGCAACGAACAAGAGAGAAAT 58.870 39.130 0.00 0.00 0.00 2.17
2041 2294 3.059597 CCTGTAACAGCAACGAACAAGAG 60.060 47.826 0.00 0.00 0.00 2.85
2055 2308 1.127567 AGCTGCCTCCACCTGTAACA 61.128 55.000 0.00 0.00 0.00 2.41
2157 2410 7.225931 TGTTCATGTAGTTGAAGTGAGTTAACC 59.774 37.037 0.88 0.00 36.34 2.85
2165 2418 4.055360 TCGGTGTTCATGTAGTTGAAGTG 58.945 43.478 0.00 0.00 36.34 3.16
2174 2427 3.326836 TGATTGCTCGGTGTTCATGTA 57.673 42.857 0.00 0.00 0.00 2.29
2191 2444 9.719355 GGGAGTGGTAAAAATTAAAACAATGAT 57.281 29.630 0.00 0.00 0.00 2.45
2211 2464 2.529632 TCATATGGATCGGAGGGAGTG 58.470 52.381 2.13 0.00 0.00 3.51
2215 2468 4.292186 ACAATTCATATGGATCGGAGGG 57.708 45.455 2.13 0.00 0.00 4.30
2217 2470 6.652062 TCATCAACAATTCATATGGATCGGAG 59.348 38.462 2.13 0.00 0.00 4.63
2218 2471 6.532826 TCATCAACAATTCATATGGATCGGA 58.467 36.000 2.13 0.00 0.00 4.55
2219 2472 6.806388 TCATCAACAATTCATATGGATCGG 57.194 37.500 2.13 0.00 0.00 4.18
2220 2473 9.338291 GAAATCATCAACAATTCATATGGATCG 57.662 33.333 2.13 0.00 0.00 3.69
2245 2498 9.684448 GTTGATGATTTAGATCGATGACTTAGA 57.316 33.333 0.54 0.00 34.91 2.10
2246 2499 9.468532 TGTTGATGATTTAGATCGATGACTTAG 57.531 33.333 0.54 0.00 34.91 2.18
2247 2500 9.816354 TTGTTGATGATTTAGATCGATGACTTA 57.184 29.630 0.54 0.00 34.91 2.24
2248 2501 8.722480 TTGTTGATGATTTAGATCGATGACTT 57.278 30.769 0.54 0.00 34.91 3.01
2249 2502 8.899427 ATTGTTGATGATTTAGATCGATGACT 57.101 30.769 0.54 0.00 34.91 3.41
2264 2517 9.002600 CCTCCGATTCATATTAATTGTTGATGA 57.997 33.333 0.00 0.00 0.00 2.92
2265 2518 8.239314 CCCTCCGATTCATATTAATTGTTGATG 58.761 37.037 0.00 0.00 0.00 3.07
2266 2519 8.163408 TCCCTCCGATTCATATTAATTGTTGAT 58.837 33.333 0.00 0.00 0.00 2.57
2267 2520 7.513856 TCCCTCCGATTCATATTAATTGTTGA 58.486 34.615 0.00 0.00 0.00 3.18
2268 2521 7.445402 ACTCCCTCCGATTCATATTAATTGTTG 59.555 37.037 0.00 0.00 0.00 3.33
2269 2522 7.518188 ACTCCCTCCGATTCATATTAATTGTT 58.482 34.615 0.00 0.00 0.00 2.83
2270 2523 7.079451 ACTCCCTCCGATTCATATTAATTGT 57.921 36.000 0.00 0.00 0.00 2.71
2271 2524 7.278868 GCTACTCCCTCCGATTCATATTAATTG 59.721 40.741 0.00 0.00 0.00 2.32
2272 2525 7.038302 TGCTACTCCCTCCGATTCATATTAATT 60.038 37.037 0.00 0.00 0.00 1.40
2273 2526 6.440647 TGCTACTCCCTCCGATTCATATTAAT 59.559 38.462 0.00 0.00 0.00 1.40
2274 2527 5.778241 TGCTACTCCCTCCGATTCATATTAA 59.222 40.000 0.00 0.00 0.00 1.40
2275 2528 5.330233 TGCTACTCCCTCCGATTCATATTA 58.670 41.667 0.00 0.00 0.00 0.98
2276 2529 4.160329 TGCTACTCCCTCCGATTCATATT 58.840 43.478 0.00 0.00 0.00 1.28
2277 2530 3.779444 TGCTACTCCCTCCGATTCATAT 58.221 45.455 0.00 0.00 0.00 1.78
2278 2531 3.238788 TGCTACTCCCTCCGATTCATA 57.761 47.619 0.00 0.00 0.00 2.15
2279 2532 2.088104 TGCTACTCCCTCCGATTCAT 57.912 50.000 0.00 0.00 0.00 2.57
2280 2533 2.088104 ATGCTACTCCCTCCGATTCA 57.912 50.000 0.00 0.00 0.00 2.57
2281 2534 2.630580 AGAATGCTACTCCCTCCGATTC 59.369 50.000 0.00 0.00 0.00 2.52
2282 2535 2.683768 AGAATGCTACTCCCTCCGATT 58.316 47.619 0.00 0.00 0.00 3.34
2283 2536 2.390225 AGAATGCTACTCCCTCCGAT 57.610 50.000 0.00 0.00 0.00 4.18
2284 2537 2.032620 GAAGAATGCTACTCCCTCCGA 58.967 52.381 0.00 0.00 0.00 4.55
2285 2538 1.757118 TGAAGAATGCTACTCCCTCCG 59.243 52.381 0.00 0.00 0.00 4.63
2286 2539 3.198853 AGTTGAAGAATGCTACTCCCTCC 59.801 47.826 0.00 0.00 0.00 4.30
2287 2540 4.479786 AGTTGAAGAATGCTACTCCCTC 57.520 45.455 0.00 0.00 0.00 4.30
2288 2541 5.338463 GGTTAGTTGAAGAATGCTACTCCCT 60.338 44.000 0.00 0.00 0.00 4.20
2289 2542 4.876679 GGTTAGTTGAAGAATGCTACTCCC 59.123 45.833 0.00 0.00 0.00 4.30
2290 2543 4.567159 CGGTTAGTTGAAGAATGCTACTCC 59.433 45.833 0.00 0.00 0.00 3.85
2291 2544 4.033014 GCGGTTAGTTGAAGAATGCTACTC 59.967 45.833 0.00 0.00 0.00 2.59
2292 2545 3.933332 GCGGTTAGTTGAAGAATGCTACT 59.067 43.478 0.00 0.00 0.00 2.57
2293 2546 3.933332 AGCGGTTAGTTGAAGAATGCTAC 59.067 43.478 0.00 0.00 0.00 3.58
2294 2547 4.181578 GAGCGGTTAGTTGAAGAATGCTA 58.818 43.478 0.00 0.00 0.00 3.49
2295 2548 3.003480 GAGCGGTTAGTTGAAGAATGCT 58.997 45.455 0.00 0.00 0.00 3.79
2296 2549 2.096013 GGAGCGGTTAGTTGAAGAATGC 59.904 50.000 0.00 0.00 0.00 3.56
2297 2550 3.334691 TGGAGCGGTTAGTTGAAGAATG 58.665 45.455 0.00 0.00 0.00 2.67
2298 2551 3.695830 TGGAGCGGTTAGTTGAAGAAT 57.304 42.857 0.00 0.00 0.00 2.40
2299 2552 3.695830 ATGGAGCGGTTAGTTGAAGAA 57.304 42.857 0.00 0.00 0.00 2.52
2300 2553 3.244422 ACAATGGAGCGGTTAGTTGAAGA 60.244 43.478 11.85 0.00 0.00 2.87
2301 2554 3.074412 ACAATGGAGCGGTTAGTTGAAG 58.926 45.455 11.85 0.00 0.00 3.02
2302 2555 3.071479 GACAATGGAGCGGTTAGTTGAA 58.929 45.455 11.85 0.00 0.00 2.69
2303 2556 2.301870 AGACAATGGAGCGGTTAGTTGA 59.698 45.455 11.85 0.00 0.00 3.18
2304 2557 2.699954 AGACAATGGAGCGGTTAGTTG 58.300 47.619 0.00 0.00 0.00 3.16
2305 2558 3.418684 AAGACAATGGAGCGGTTAGTT 57.581 42.857 0.00 0.00 0.00 2.24
2306 2559 3.335579 GAAAGACAATGGAGCGGTTAGT 58.664 45.455 0.00 0.00 0.00 2.24
2307 2560 2.348666 CGAAAGACAATGGAGCGGTTAG 59.651 50.000 0.00 0.00 0.00 2.34
2308 2561 2.289195 ACGAAAGACAATGGAGCGGTTA 60.289 45.455 0.00 0.00 0.00 2.85
2309 2562 1.156736 CGAAAGACAATGGAGCGGTT 58.843 50.000 0.00 0.00 0.00 4.44
2310 2563 0.034896 ACGAAAGACAATGGAGCGGT 59.965 50.000 0.00 0.00 0.00 5.68
2311 2564 2.004583 TACGAAAGACAATGGAGCGG 57.995 50.000 0.00 0.00 0.00 5.52
2312 2565 4.318121 GCTATTACGAAAGACAATGGAGCG 60.318 45.833 0.00 0.00 0.00 5.03
2313 2566 4.570772 TGCTATTACGAAAGACAATGGAGC 59.429 41.667 0.00 0.00 0.00 4.70
2314 2567 6.662414 TTGCTATTACGAAAGACAATGGAG 57.338 37.500 0.00 0.00 0.00 3.86
2315 2568 7.441890 TTTTGCTATTACGAAAGACAATGGA 57.558 32.000 0.00 0.00 0.00 3.41
2316 2569 8.687824 ATTTTTGCTATTACGAAAGACAATGG 57.312 30.769 0.00 0.00 0.00 3.16
2317 2570 9.340695 TGATTTTTGCTATTACGAAAGACAATG 57.659 29.630 0.00 0.00 0.00 2.82
2319 2572 9.554724 GATGATTTTTGCTATTACGAAAGACAA 57.445 29.630 0.00 0.00 0.00 3.18
2320 2573 8.726068 TGATGATTTTTGCTATTACGAAAGACA 58.274 29.630 0.00 0.00 0.00 3.41
2321 2574 9.554724 TTGATGATTTTTGCTATTACGAAAGAC 57.445 29.630 0.00 0.00 0.00 3.01
2322 2575 9.554724 GTTGATGATTTTTGCTATTACGAAAGA 57.445 29.630 0.00 0.00 0.00 2.52
2323 2576 9.340695 TGTTGATGATTTTTGCTATTACGAAAG 57.659 29.630 0.00 0.00 0.00 2.62
2324 2577 9.684448 TTGTTGATGATTTTTGCTATTACGAAA 57.316 25.926 0.00 0.00 0.00 3.46
2325 2578 9.853555 ATTGTTGATGATTTTTGCTATTACGAA 57.146 25.926 0.00 0.00 0.00 3.85
2326 2579 9.853555 AATTGTTGATGATTTTTGCTATTACGA 57.146 25.926 0.00 0.00 0.00 3.43
2339 2592 9.519191 TCCGATCCATATTAATTGTTGATGATT 57.481 29.630 0.00 0.00 0.00 2.57
2340 2593 9.170734 CTCCGATCCATATTAATTGTTGATGAT 57.829 33.333 0.00 0.00 0.00 2.45
2341 2594 7.607607 CCTCCGATCCATATTAATTGTTGATGA 59.392 37.037 0.00 0.00 0.00 2.92
2342 2595 7.148188 CCCTCCGATCCATATTAATTGTTGATG 60.148 40.741 0.00 0.00 0.00 3.07
2343 2596 6.886459 CCCTCCGATCCATATTAATTGTTGAT 59.114 38.462 0.00 0.00 0.00 2.57
2344 2597 6.043822 TCCCTCCGATCCATATTAATTGTTGA 59.956 38.462 0.00 0.00 0.00 3.18
2345 2598 6.237901 TCCCTCCGATCCATATTAATTGTTG 58.762 40.000 0.00 0.00 0.00 3.33
2346 2599 6.044404 ACTCCCTCCGATCCATATTAATTGTT 59.956 38.462 0.00 0.00 0.00 2.83
2347 2600 5.548056 ACTCCCTCCGATCCATATTAATTGT 59.452 40.000 0.00 0.00 0.00 2.71
2348 2601 6.054860 ACTCCCTCCGATCCATATTAATTG 57.945 41.667 0.00 0.00 0.00 2.32
2349 2602 6.127026 GCTACTCCCTCCGATCCATATTAATT 60.127 42.308 0.00 0.00 0.00 1.40
2350 2603 5.364157 GCTACTCCCTCCGATCCATATTAAT 59.636 44.000 0.00 0.00 0.00 1.40
2351 2604 4.710375 GCTACTCCCTCCGATCCATATTAA 59.290 45.833 0.00 0.00 0.00 1.40
2352 2605 4.264217 TGCTACTCCCTCCGATCCATATTA 60.264 45.833 0.00 0.00 0.00 0.98
2353 2606 3.100671 GCTACTCCCTCCGATCCATATT 58.899 50.000 0.00 0.00 0.00 1.28
2354 2607 2.043115 TGCTACTCCCTCCGATCCATAT 59.957 50.000 0.00 0.00 0.00 1.78
2355 2608 1.427753 TGCTACTCCCTCCGATCCATA 59.572 52.381 0.00 0.00 0.00 2.74
2356 2609 0.188587 TGCTACTCCCTCCGATCCAT 59.811 55.000 0.00 0.00 0.00 3.41
2357 2610 0.188587 ATGCTACTCCCTCCGATCCA 59.811 55.000 0.00 0.00 0.00 3.41
2358 2611 1.273886 GAATGCTACTCCCTCCGATCC 59.726 57.143 0.00 0.00 0.00 3.36
2359 2612 2.243810 AGAATGCTACTCCCTCCGATC 58.756 52.381 0.00 0.00 0.00 3.69
2360 2613 2.390225 AGAATGCTACTCCCTCCGAT 57.610 50.000 0.00 0.00 0.00 4.18
2361 2614 2.032620 GAAGAATGCTACTCCCTCCGA 58.967 52.381 0.00 0.00 0.00 4.55
2362 2615 1.757118 TGAAGAATGCTACTCCCTCCG 59.243 52.381 0.00 0.00 0.00 4.63
2363 2616 3.198853 AGTTGAAGAATGCTACTCCCTCC 59.801 47.826 0.00 0.00 0.00 4.30
2364 2617 4.479786 AGTTGAAGAATGCTACTCCCTC 57.520 45.455 0.00 0.00 0.00 4.30
2365 2618 5.338463 GGTTAGTTGAAGAATGCTACTCCCT 60.338 44.000 0.00 0.00 0.00 4.20
2366 2619 4.876679 GGTTAGTTGAAGAATGCTACTCCC 59.123 45.833 0.00 0.00 0.00 4.30
2367 2620 5.351740 GTGGTTAGTTGAAGAATGCTACTCC 59.648 44.000 0.00 0.00 0.00 3.85
2368 2621 6.166982 AGTGGTTAGTTGAAGAATGCTACTC 58.833 40.000 0.00 0.00 0.00 2.59
2395 2648 6.481954 ACCTTTGCTATTACGAAAGACAAG 57.518 37.500 0.00 0.00 0.00 3.16
2398 2651 5.811100 AGCTACCTTTGCTATTACGAAAGAC 59.189 40.000 0.00 0.00 39.21 3.01
2405 2661 4.766375 TCCACAGCTACCTTTGCTATTAC 58.234 43.478 0.00 0.00 38.92 1.89
2409 2665 1.066143 GCTCCACAGCTACCTTTGCTA 60.066 52.381 0.00 0.00 43.09 3.49
2422 2678 4.528206 TCTTCAGACTTTGATAGCTCCACA 59.472 41.667 0.00 0.00 35.27 4.17
2464 2720 1.000506 GTCACTAGTGAAGGGTGCGAA 59.999 52.381 26.74 0.00 41.85 4.70
2505 2761 9.739276 AATTAAGTGAGATGGAAATAAGACACA 57.261 29.630 0.00 0.00 0.00 3.72
2576 2832 2.416547 GCAGCGCATTCTTCTAGTGAAA 59.583 45.455 11.47 0.00 0.00 2.69
2750 3006 7.921214 CGAAGTATGAAATGAAGCTACTAGGAA 59.079 37.037 0.00 0.00 0.00 3.36
2802 3058 4.460382 AGTGGTCAATCTGTAAAATGGCAG 59.540 41.667 0.00 0.00 0.00 4.85
2845 3101 2.047560 GCGAAACCGTGGGCTACT 60.048 61.111 0.00 0.00 0.00 2.57
2857 3113 1.136085 GCGTTGTATCTGCAAGCGAAA 60.136 47.619 0.00 0.00 0.00 3.46
2902 3158 2.116736 CTGCACGAGCTTTTTCGGCA 62.117 55.000 6.36 9.80 44.57 5.69
2997 3253 5.650266 TGACTTGTTTAAAACAGCTTGGAGA 59.350 36.000 0.00 0.00 43.27 3.71
3012 3268 6.999950 ACAAAACTAAAAGGGTGACTTGTTT 58.000 32.000 0.00 0.00 39.96 2.83
3021 3277 8.445493 CGTCGATTTATACAAAACTAAAAGGGT 58.555 33.333 0.00 0.00 0.00 4.34
3036 3292 8.428186 AACTAATGAAAAGGCGTCGATTTATA 57.572 30.769 0.00 0.00 0.00 0.98
3038 3294 6.730960 AACTAATGAAAAGGCGTCGATTTA 57.269 33.333 0.00 0.00 0.00 1.40
3040 3296 5.622770 AAACTAATGAAAAGGCGTCGATT 57.377 34.783 0.00 0.00 0.00 3.34
3041 3297 6.103997 TCTAAACTAATGAAAAGGCGTCGAT 58.896 36.000 0.00 0.00 0.00 3.59
3042 3298 5.472148 TCTAAACTAATGAAAAGGCGTCGA 58.528 37.500 0.00 0.00 0.00 4.20
3043 3299 5.773239 TCTAAACTAATGAAAAGGCGTCG 57.227 39.130 0.00 0.00 0.00 5.12
3044 3300 7.130303 ACTTCTAAACTAATGAAAAGGCGTC 57.870 36.000 0.00 0.00 0.00 5.19
3045 3301 7.658575 TGTACTTCTAAACTAATGAAAAGGCGT 59.341 33.333 0.00 0.00 0.00 5.68
3062 3318 8.470805 CAAGAGCTCCTTAATTCTGTACTTCTA 58.529 37.037 10.93 0.00 32.86 2.10
3070 3326 3.883669 AGGCAAGAGCTCCTTAATTCTG 58.116 45.455 10.93 0.00 41.70 3.02
3112 3369 1.607148 ACGCCTAAAAAGTTCAGCACC 59.393 47.619 0.00 0.00 0.00 5.01
3124 3381 0.604578 ACGACCAAGCTACGCCTAAA 59.395 50.000 0.00 0.00 0.00 1.85
3131 3388 2.004583 TGCATACACGACCAAGCTAC 57.995 50.000 0.00 0.00 0.00 3.58
3197 3454 4.214310 TCCCATGCAGAGAAGAACAAAAA 58.786 39.130 0.00 0.00 0.00 1.94
3267 5844 0.522626 CATTCACCACTTGCATCGCA 59.477 50.000 0.00 0.00 36.47 5.10
3297 5874 7.173218 TGAGACACCTTGTTGATCTGTAATTTC 59.827 37.037 0.00 0.00 0.00 2.17
3355 6472 9.757227 TTTTCAGAAACCCATTTGTTAATACAG 57.243 29.630 0.00 0.00 35.28 2.74
3455 6577 1.614241 CCGAGAGACCCGGGTTCAAT 61.614 60.000 30.89 14.72 43.05 2.57
3539 6661 5.591067 TCCCGTTGTGTCTTCAACTTTAAAT 59.409 36.000 7.72 0.00 43.55 1.40
3541 6663 4.515361 TCCCGTTGTGTCTTCAACTTTAA 58.485 39.130 7.72 0.00 43.55 1.52
3542 6664 4.124238 CTCCCGTTGTGTCTTCAACTTTA 58.876 43.478 7.72 0.00 43.55 1.85
3549 6671 0.680061 ACTCCTCCCGTTGTGTCTTC 59.320 55.000 0.00 0.00 0.00 2.87
3624 6773 2.203280 CACCGCACCCAACCAGAA 60.203 61.111 0.00 0.00 0.00 3.02
3625 6774 4.947147 GCACCGCACCCAACCAGA 62.947 66.667 0.00 0.00 0.00 3.86
3663 6812 1.384525 CACGGTTGTTTCTCCCACAA 58.615 50.000 0.00 0.00 0.00 3.33
3677 6826 4.936823 GTGTGGTCGTCGCACGGT 62.937 66.667 8.46 0.00 45.38 4.83
3712 6861 4.150454 AGGGGGAGGCGGAGAGAG 62.150 72.222 0.00 0.00 0.00 3.20
3731 7091 1.000163 GTCCTGAACGACTCTCAAGCA 60.000 52.381 0.00 0.00 0.00 3.91
3732 7092 1.000163 TGTCCTGAACGACTCTCAAGC 60.000 52.381 0.00 0.00 33.70 4.01
3736 7096 2.395654 GTGTTGTCCTGAACGACTCTC 58.604 52.381 0.00 0.00 42.09 3.20
3737 7097 1.269102 CGTGTTGTCCTGAACGACTCT 60.269 52.381 0.00 0.00 42.09 3.24
3746 7106 1.535462 GGATCAAACCGTGTTGTCCTG 59.465 52.381 0.00 0.00 31.46 3.86
3753 7113 4.764050 TGTATATGGGATCAAACCGTGT 57.236 40.909 0.00 0.00 0.00 4.49
3755 7115 4.039973 ACGATGTATATGGGATCAAACCGT 59.960 41.667 0.00 0.00 0.00 4.83
3760 7120 4.082408 GTCCGACGATGTATATGGGATCAA 60.082 45.833 0.00 0.00 0.00 2.57
3761 7121 3.442625 GTCCGACGATGTATATGGGATCA 59.557 47.826 0.00 0.00 0.00 2.92
3763 7123 2.422479 CGTCCGACGATGTATATGGGAT 59.578 50.000 16.03 0.00 46.05 3.85
3765 7125 1.135489 CCGTCCGACGATGTATATGGG 60.135 57.143 22.40 0.00 46.05 4.00
3766 7126 1.731424 GCCGTCCGACGATGTATATGG 60.731 57.143 22.40 3.27 46.05 2.74
3767 7127 1.614385 GCCGTCCGACGATGTATATG 58.386 55.000 22.40 3.98 46.05 1.78
3768 7128 0.167470 CGCCGTCCGACGATGTATAT 59.833 55.000 22.40 0.00 46.05 0.86
3769 7129 0.879839 TCGCCGTCCGACGATGTATA 60.880 55.000 22.40 0.00 46.05 1.47
3770 7130 2.182181 TCGCCGTCCGACGATGTAT 61.182 57.895 22.40 0.00 46.05 2.29
3771 7131 2.819154 TCGCCGTCCGACGATGTA 60.819 61.111 22.40 2.10 46.05 2.29
3780 7142 0.876342 CTCTTTAGCCATCGCCGTCC 60.876 60.000 0.00 0.00 34.57 4.79
3801 7163 0.736325 ACAAGGAGATTCCGAACGCG 60.736 55.000 3.53 3.53 42.75 6.01
3817 7179 6.565060 GCCAACGATTGCACGATTATATACAA 60.565 38.462 3.48 0.00 37.03 2.41
3826 7188 1.647545 CTGGCCAACGATTGCACGAT 61.648 55.000 7.01 0.00 37.03 3.73
3829 7191 2.268076 ACCTGGCCAACGATTGCAC 61.268 57.895 7.01 0.00 0.00 4.57
3854 7216 1.001815 CCCAACGACATGACACCAAAC 60.002 52.381 0.00 0.00 0.00 2.93
3863 7225 2.565647 TTGGCATCCCAACGACATG 58.434 52.632 0.00 0.00 46.01 3.21
3871 7233 0.911769 CTCTAGTGGTTGGCATCCCA 59.088 55.000 11.95 7.20 40.06 4.37
3886 7248 1.239296 CGACGACCACCACCACTCTA 61.239 60.000 0.00 0.00 0.00 2.43
3896 7258 0.389948 AAGATGAAGGCGACGACCAC 60.390 55.000 0.00 0.00 0.00 4.16
3905 7267 2.208431 CATGGAGTCGAAGATGAAGGC 58.792 52.381 0.00 0.00 40.67 4.35
3906 7268 2.169352 ACCATGGAGTCGAAGATGAAGG 59.831 50.000 21.47 0.00 40.67 3.46
3911 7273 1.866015 TCCACCATGGAGTCGAAGAT 58.134 50.000 21.47 0.00 42.67 2.40
3912 7274 3.374318 TCCACCATGGAGTCGAAGA 57.626 52.632 21.47 0.00 42.67 2.87
3948 7310 0.183731 AGGGGAATTCTGCCGGATTC 59.816 55.000 5.05 5.19 32.63 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.