Multiple sequence alignment - TraesCS1A01G246000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G246000 chr1A 100.000 2288 0 0 1 2288 435375146 435377433 0.000000e+00 4226.0
1 TraesCS1A01G246000 chr1D 97.203 1609 39 4 1 1607 337210393 337211997 0.000000e+00 2717.0
2 TraesCS1A01G246000 chr1D 96.552 290 9 1 1912 2200 337212492 337212781 1.590000e-131 479.0
3 TraesCS1A01G246000 chr1D 91.554 296 8 2 1605 1900 337212031 337212309 2.130000e-105 392.0
4 TraesCS1A01G246000 chr1B 94.235 1405 36 13 214 1607 452564803 452566173 0.000000e+00 2104.0
5 TraesCS1A01G246000 chr1B 96.128 594 19 2 1605 2197 452566205 452566795 0.000000e+00 966.0
6 TraesCS1A01G246000 chr1B 95.851 241 8 1 1 239 452564497 452564737 2.760000e-104 388.0
7 TraesCS1A01G246000 chr5D 91.335 854 60 6 762 1610 528972199 528971355 0.000000e+00 1155.0
8 TraesCS1A01G246000 chr5D 90.349 601 33 8 1605 2200 528971329 528970749 0.000000e+00 765.0
9 TraesCS1A01G246000 chr5D 93.333 90 5 1 2192 2281 469554769 469554857 5.130000e-27 132.0
10 TraesCS1A01G246000 chr5B 90.920 859 65 6 763 1610 666196353 666195497 0.000000e+00 1142.0
11 TraesCS1A01G246000 chr5B 89.073 604 34 13 1605 2200 666195471 666194892 0.000000e+00 721.0
12 TraesCS1A01G246000 chr5B 81.152 191 27 8 785 973 28234946 28234763 6.590000e-31 145.0
13 TraesCS1A01G246000 chr5A 87.268 754 53 21 892 1610 657199290 657198545 0.000000e+00 821.0
14 TraesCS1A01G246000 chr5A 86.446 605 49 19 1605 2200 657198519 657197939 1.150000e-177 632.0
15 TraesCS1A01G246000 chr7B 89.036 529 45 7 242 762 499716022 499715499 0.000000e+00 643.0
16 TraesCS1A01G246000 chr3D 89.057 530 43 9 242 762 61933320 61933843 0.000000e+00 643.0
17 TraesCS1A01G246000 chr3D 93.617 94 6 0 2188 2281 570848660 570848753 8.520000e-30 141.0
18 TraesCS1A01G246000 chr3D 91.579 95 7 1 2189 2282 411724437 411724343 1.840000e-26 130.0
19 TraesCS1A01G246000 chr6D 89.057 530 41 11 243 762 15120086 15120608 1.920000e-180 641.0
20 TraesCS1A01G246000 chr6D 82.424 165 22 6 785 948 152256284 152256442 1.100000e-28 137.0
21 TraesCS1A01G246000 chr6D 91.000 100 6 3 2189 2286 20145818 20145720 5.130000e-27 132.0
22 TraesCS1A01G246000 chr6D 92.308 91 7 0 2190 2280 146072817 146072907 1.840000e-26 130.0
23 TraesCS1A01G246000 chr4D 88.658 529 45 10 243 762 386933120 386933642 4.150000e-177 630.0
24 TraesCS1A01G246000 chr3A 88.658 529 44 11 243 762 55446565 55447086 4.150000e-177 630.0
25 TraesCS1A01G246000 chr3A 84.337 166 18 5 785 948 9129650 9129491 3.040000e-34 156.0
26 TraesCS1A01G246000 chr4B 88.425 527 46 10 243 760 483772079 483772599 2.500000e-174 621.0
27 TraesCS1A01G246000 chr2B 88.280 529 47 10 243 762 77334655 77335177 8.980000e-174 619.0
28 TraesCS1A01G246000 chr2B 82.738 168 21 8 785 951 236703603 236703443 2.370000e-30 143.0
29 TraesCS1A01G246000 chr2B 87.342 79 8 2 138 215 765895161 765895084 3.130000e-14 89.8
30 TraesCS1A01G246000 chr2B 93.333 60 4 0 138 197 765895841 765895900 3.130000e-14 89.8
31 TraesCS1A01G246000 chr7D 94.382 89 5 0 2193 2281 562392890 562392802 1.100000e-28 137.0
32 TraesCS1A01G246000 chr7D 93.333 90 6 0 2195 2284 79628343 79628432 1.430000e-27 134.0
33 TraesCS1A01G246000 chr6A 93.407 91 5 1 2191 2281 610518881 610518792 1.430000e-27 134.0
34 TraesCS1A01G246000 chr6B 81.818 165 23 6 785 948 276732236 276732394 5.130000e-27 132.0
35 TraesCS1A01G246000 chr2D 89.899 99 10 0 2183 2281 627925561 627925659 6.630000e-26 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G246000 chr1A 435375146 435377433 2287 False 4226.000000 4226 100.000000 1 2288 1 chr1A.!!$F1 2287
1 TraesCS1A01G246000 chr1D 337210393 337212781 2388 False 1196.000000 2717 95.103000 1 2200 3 chr1D.!!$F1 2199
2 TraesCS1A01G246000 chr1B 452564497 452566795 2298 False 1152.666667 2104 95.404667 1 2197 3 chr1B.!!$F1 2196
3 TraesCS1A01G246000 chr5D 528970749 528972199 1450 True 960.000000 1155 90.842000 762 2200 2 chr5D.!!$R1 1438
4 TraesCS1A01G246000 chr5B 666194892 666196353 1461 True 931.500000 1142 89.996500 763 2200 2 chr5B.!!$R2 1437
5 TraesCS1A01G246000 chr5A 657197939 657199290 1351 True 726.500000 821 86.857000 892 2200 2 chr5A.!!$R1 1308
6 TraesCS1A01G246000 chr7B 499715499 499716022 523 True 643.000000 643 89.036000 242 762 1 chr7B.!!$R1 520
7 TraesCS1A01G246000 chr3D 61933320 61933843 523 False 643.000000 643 89.057000 242 762 1 chr3D.!!$F1 520
8 TraesCS1A01G246000 chr6D 15120086 15120608 522 False 641.000000 641 89.057000 243 762 1 chr6D.!!$F1 519
9 TraesCS1A01G246000 chr4D 386933120 386933642 522 False 630.000000 630 88.658000 243 762 1 chr4D.!!$F1 519
10 TraesCS1A01G246000 chr3A 55446565 55447086 521 False 630.000000 630 88.658000 243 762 1 chr3A.!!$F1 519
11 TraesCS1A01G246000 chr4B 483772079 483772599 520 False 621.000000 621 88.425000 243 760 1 chr4B.!!$F1 517
12 TraesCS1A01G246000 chr2B 77334655 77335177 522 False 619.000000 619 88.280000 243 762 1 chr2B.!!$F1 519

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
41 42 0.319555 TCTCCAAACCTTCTGTCGCG 60.32 55.0 0.0 0.0 0.0 5.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1425 1588 1.710809 ACAGACCCCCTTGCATTACTT 59.289 47.619 0.0 0.0 0.0 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 0.319555 TCTCCAAACCTTCTGTCGCG 60.320 55.000 0.00 0.00 0.00 5.87
84 85 2.562912 CATCAGCACAACCACCGC 59.437 61.111 0.00 0.00 0.00 5.68
198 201 2.037772 TGAGGACCTTTCTGTTCTCTGC 59.962 50.000 0.00 0.00 40.86 4.26
329 433 2.916111 CCACGCACTGTTTATGTCAAC 58.084 47.619 0.00 0.00 0.00 3.18
338 442 6.690530 CACTGTTTATGTCAACCATTTGGAT 58.309 36.000 3.01 0.00 38.94 3.41
490 596 6.839124 TGTGTTTTCCTGATGCATTTCTAT 57.161 33.333 0.00 0.00 0.00 1.98
781 897 8.452989 AACGAATAGAATTGTTGAAGAATTGC 57.547 30.769 4.94 0.00 0.00 3.56
901 1022 8.600625 CGTGCTACTGCTAAATTAAATAGAACA 58.399 33.333 3.52 0.00 40.48 3.18
1007 1158 2.892425 CCTGCGCGAGATGGGAAC 60.892 66.667 12.10 0.00 0.00 3.62
1319 1473 1.962321 GCCCTCGACCCCTTCTTCTC 61.962 65.000 0.00 0.00 0.00 2.87
1425 1588 8.038351 TGGTTCGTGATTTGTATTCTCAAGATA 58.962 33.333 0.00 0.00 29.70 1.98
1669 1871 5.235616 GTGAATTCCACGTTTAAGTGACTCA 59.764 40.000 2.27 0.00 44.43 3.41
1841 2043 9.191479 TGAGAATTTGAACTTACCCTTTGTTAA 57.809 29.630 0.00 0.00 0.00 2.01
2107 2495 3.689649 GCCCATCGTAGAATTGTGAGTTT 59.310 43.478 0.00 0.00 43.58 2.66
2120 2508 9.520204 AGAATTGTGAGTTTGACATTTTAACTG 57.480 29.630 0.00 0.00 32.58 3.16
2197 2586 9.169592 CTAGACTAGAGGCATCCTAATTAGTAC 57.830 40.741 11.50 0.00 31.76 2.73
2198 2587 7.761608 AGACTAGAGGCATCCTAATTAGTACT 58.238 38.462 11.50 0.00 31.76 2.73
2199 2588 7.886446 AGACTAGAGGCATCCTAATTAGTACTC 59.114 40.741 11.50 10.20 31.76 2.59
2201 2590 5.088026 AGAGGCATCCTAATTAGTACTCCC 58.912 45.833 11.50 5.31 31.76 4.30
2202 2591 5.088026 GAGGCATCCTAATTAGTACTCCCT 58.912 45.833 11.50 9.48 31.76 4.20
2203 2592 5.477913 AGGCATCCTAATTAGTACTCCCTT 58.522 41.667 11.50 0.00 28.47 3.95
2204 2593 5.544562 AGGCATCCTAATTAGTACTCCCTTC 59.455 44.000 11.50 0.00 28.47 3.46
2205 2594 5.307196 GGCATCCTAATTAGTACTCCCTTCA 59.693 44.000 11.50 0.00 0.00 3.02
2206 2595 6.013293 GGCATCCTAATTAGTACTCCCTTCAT 60.013 42.308 11.50 0.00 0.00 2.57
2207 2596 7.100409 GCATCCTAATTAGTACTCCCTTCATC 58.900 42.308 11.50 0.00 0.00 2.92
2208 2597 7.616313 CATCCTAATTAGTACTCCCTTCATCC 58.384 42.308 11.50 0.00 0.00 3.51
2209 2598 6.082707 TCCTAATTAGTACTCCCTTCATCCC 58.917 44.000 11.50 0.00 0.00 3.85
2210 2599 5.844516 CCTAATTAGTACTCCCTTCATCCCA 59.155 44.000 11.50 0.00 0.00 4.37
2211 2600 6.502158 CCTAATTAGTACTCCCTTCATCCCAT 59.498 42.308 11.50 0.00 0.00 4.00
2212 2601 5.832539 ATTAGTACTCCCTTCATCCCATG 57.167 43.478 0.00 0.00 0.00 3.66
2213 2602 3.421394 AGTACTCCCTTCATCCCATGA 57.579 47.619 0.00 0.00 37.55 3.07
2214 2603 3.946824 AGTACTCCCTTCATCCCATGAT 58.053 45.455 0.00 0.00 39.39 2.45
2215 2604 5.093236 AGTACTCCCTTCATCCCATGATA 57.907 43.478 0.00 0.00 39.39 2.15
2216 2605 5.669857 AGTACTCCCTTCATCCCATGATAT 58.330 41.667 0.00 0.00 39.39 1.63
2217 2606 6.815880 AGTACTCCCTTCATCCCATGATATA 58.184 40.000 0.00 0.00 39.39 0.86
2218 2607 7.256399 AGTACTCCCTTCATCCCATGATATAA 58.744 38.462 0.00 0.00 39.39 0.98
2219 2608 6.633325 ACTCCCTTCATCCCATGATATAAG 57.367 41.667 0.00 0.00 39.39 1.73
2220 2609 6.334296 ACTCCCTTCATCCCATGATATAAGA 58.666 40.000 0.00 0.00 39.39 2.10
2221 2610 6.443206 ACTCCCTTCATCCCATGATATAAGAG 59.557 42.308 0.00 0.00 39.39 2.85
2222 2611 5.190528 TCCCTTCATCCCATGATATAAGAGC 59.809 44.000 0.00 0.00 39.39 4.09
2223 2612 5.114780 CCTTCATCCCATGATATAAGAGCG 58.885 45.833 0.00 0.00 39.39 5.03
2224 2613 5.337894 CCTTCATCCCATGATATAAGAGCGT 60.338 44.000 0.00 0.00 39.39 5.07
2225 2614 5.745312 TCATCCCATGATATAAGAGCGTT 57.255 39.130 0.00 0.00 33.59 4.84
2226 2615 6.114187 TCATCCCATGATATAAGAGCGTTT 57.886 37.500 0.00 0.00 33.59 3.60
2227 2616 6.533730 TCATCCCATGATATAAGAGCGTTTT 58.466 36.000 0.00 0.00 33.59 2.43
2228 2617 6.998074 TCATCCCATGATATAAGAGCGTTTTT 59.002 34.615 0.00 0.00 33.59 1.94
2229 2618 6.618287 TCCCATGATATAAGAGCGTTTTTG 57.382 37.500 0.00 0.00 0.00 2.44
2230 2619 6.353323 TCCCATGATATAAGAGCGTTTTTGA 58.647 36.000 0.00 0.00 0.00 2.69
2231 2620 6.826231 TCCCATGATATAAGAGCGTTTTTGAA 59.174 34.615 0.00 0.00 0.00 2.69
2232 2621 7.338196 TCCCATGATATAAGAGCGTTTTTGAAA 59.662 33.333 0.00 0.00 0.00 2.69
2233 2622 7.432252 CCCATGATATAAGAGCGTTTTTGAAAC 59.568 37.037 0.00 0.00 0.00 2.78
2234 2623 8.184192 CCATGATATAAGAGCGTTTTTGAAACT 58.816 33.333 0.00 0.00 0.00 2.66
2237 2626 9.431887 TGATATAAGAGCGTTTTTGAAACTAGT 57.568 29.630 0.00 0.00 0.00 2.57
2238 2627 9.690434 GATATAAGAGCGTTTTTGAAACTAGTG 57.310 33.333 0.00 0.00 0.00 2.74
2239 2628 5.813080 AAGAGCGTTTTTGAAACTAGTGT 57.187 34.783 0.00 0.00 0.00 3.55
2240 2629 6.913873 AAGAGCGTTTTTGAAACTAGTGTA 57.086 33.333 0.00 0.00 0.00 2.90
2241 2630 6.526566 AGAGCGTTTTTGAAACTAGTGTAG 57.473 37.500 0.00 0.00 0.00 2.74
2242 2631 6.047231 AGAGCGTTTTTGAAACTAGTGTAGT 58.953 36.000 0.00 0.00 41.73 2.73
2243 2632 6.018994 AGAGCGTTTTTGAAACTAGTGTAGTG 60.019 38.462 0.00 0.00 39.39 2.74
2244 2633 5.583457 AGCGTTTTTGAAACTAGTGTAGTGT 59.417 36.000 0.00 0.00 39.39 3.55
2245 2634 6.757947 AGCGTTTTTGAAACTAGTGTAGTGTA 59.242 34.615 0.00 0.00 39.39 2.90
2246 2635 7.278424 AGCGTTTTTGAAACTAGTGTAGTGTAA 59.722 33.333 0.00 0.00 39.39 2.41
2247 2636 7.904461 GCGTTTTTGAAACTAGTGTAGTGTAAA 59.096 33.333 0.00 0.00 39.39 2.01
2248 2637 9.757859 CGTTTTTGAAACTAGTGTAGTGTAAAA 57.242 29.630 0.00 0.00 39.39 1.52
2271 2660 8.446599 AAAAACACTCTTATATTATGGGACGG 57.553 34.615 0.00 0.00 0.00 4.79
2272 2661 6.989155 AACACTCTTATATTATGGGACGGA 57.011 37.500 0.00 0.00 0.00 4.69
2273 2662 6.591750 ACACTCTTATATTATGGGACGGAG 57.408 41.667 0.00 0.00 0.00 4.63
2274 2663 5.480772 ACACTCTTATATTATGGGACGGAGG 59.519 44.000 0.00 0.00 0.00 4.30
2275 2664 5.024118 ACTCTTATATTATGGGACGGAGGG 58.976 45.833 0.00 0.00 0.00 4.30
2276 2665 5.222484 ACTCTTATATTATGGGACGGAGGGA 60.222 44.000 0.00 0.00 0.00 4.20
2277 2666 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
2278 2667 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
2279 2668 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
2280 2669 2.376695 TTATGGGACGGAGGGAGTAG 57.623 55.000 0.00 0.00 0.00 2.57
2281 2670 0.178970 TATGGGACGGAGGGAGTAGC 60.179 60.000 0.00 0.00 0.00 3.58
2282 2671 1.950748 ATGGGACGGAGGGAGTAGCT 61.951 60.000 0.00 0.00 0.00 3.32
2283 2672 1.829096 GGGACGGAGGGAGTAGCTC 60.829 68.421 0.00 0.00 0.00 4.09
2284 2673 1.227946 GGACGGAGGGAGTAGCTCT 59.772 63.158 0.00 0.00 0.00 4.09
2285 2674 0.396001 GGACGGAGGGAGTAGCTCTT 60.396 60.000 0.00 0.00 0.00 2.85
2286 2675 1.026584 GACGGAGGGAGTAGCTCTTC 58.973 60.000 0.00 0.00 0.00 2.87
2287 2676 0.626916 ACGGAGGGAGTAGCTCTTCT 59.373 55.000 0.00 0.00 0.00 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 2.842058 CCATGGAGGAGATGGCCC 59.158 66.667 5.56 0.0 41.22 5.80
84 85 1.406205 GGAAAGGGAGAAGGAAGAGCG 60.406 57.143 0.00 0.0 0.00 5.03
300 404 0.677288 ACAGTGCGTGGCAGTAGTTA 59.323 50.000 0.00 0.0 40.54 2.24
329 433 9.224267 ACGATTTGAATAGATAGATCCAAATGG 57.776 33.333 0.00 0.0 35.26 3.16
372 477 5.891451 TGTACTCTCAAATATGGTCTCGTG 58.109 41.667 0.00 0.0 0.00 4.35
461 567 3.244146 TGCATCAGGAAAACACAAATGGG 60.244 43.478 0.00 0.0 0.00 4.00
901 1022 7.692460 ATGACAACAAATATGACATGTGAGT 57.308 32.000 1.15 0.0 33.16 3.41
1141 1292 3.003763 GAGAGCCTCCGGGTTGGT 61.004 66.667 0.00 0.0 39.52 3.67
1425 1588 1.710809 ACAGACCCCCTTGCATTACTT 59.289 47.619 0.00 0.0 0.00 2.24
1669 1871 5.481473 ACAATTCTACTCATGGGCATGTTTT 59.519 36.000 0.00 0.0 39.72 2.43
1841 2043 9.978044 AACGTTAGTGATAAAGAAAGAGTAACT 57.022 29.630 0.00 0.0 0.00 2.24
2107 2495 2.819608 GCTCCCTGCAGTTAAAATGTCA 59.180 45.455 13.81 0.0 42.31 3.58
2197 2586 6.632219 GCTCTTATATCATGGGATGAAGGGAG 60.632 46.154 0.00 0.0 43.50 4.30
2198 2587 5.190528 GCTCTTATATCATGGGATGAAGGGA 59.809 44.000 0.00 0.0 43.50 4.20
2199 2588 5.435291 GCTCTTATATCATGGGATGAAGGG 58.565 45.833 0.00 0.0 43.50 3.95
2201 2590 5.728471 ACGCTCTTATATCATGGGATGAAG 58.272 41.667 0.00 0.0 43.50 3.02
2202 2591 5.745312 ACGCTCTTATATCATGGGATGAA 57.255 39.130 0.00 0.0 43.50 2.57
2203 2592 5.745312 AACGCTCTTATATCATGGGATGA 57.255 39.130 0.00 0.0 44.55 2.92
2204 2593 6.808008 AAAACGCTCTTATATCATGGGATG 57.192 37.500 0.00 0.0 34.89 3.51
2205 2594 6.998074 TCAAAAACGCTCTTATATCATGGGAT 59.002 34.615 0.00 0.0 37.55 3.85
2206 2595 6.353323 TCAAAAACGCTCTTATATCATGGGA 58.647 36.000 0.00 0.0 0.00 4.37
2207 2596 6.618287 TCAAAAACGCTCTTATATCATGGG 57.382 37.500 0.00 0.0 0.00 4.00
2208 2597 8.184192 AGTTTCAAAAACGCTCTTATATCATGG 58.816 33.333 0.00 0.0 0.00 3.66
2211 2600 9.431887 ACTAGTTTCAAAAACGCTCTTATATCA 57.568 29.630 0.00 0.0 0.00 2.15
2212 2601 9.690434 CACTAGTTTCAAAAACGCTCTTATATC 57.310 33.333 0.00 0.0 0.00 1.63
2213 2602 9.216117 ACACTAGTTTCAAAAACGCTCTTATAT 57.784 29.630 0.00 0.0 0.00 0.86
2214 2603 8.597662 ACACTAGTTTCAAAAACGCTCTTATA 57.402 30.769 0.00 0.0 0.00 0.98
2215 2604 7.492352 ACACTAGTTTCAAAAACGCTCTTAT 57.508 32.000 0.00 0.0 0.00 1.73
2216 2605 6.913873 ACACTAGTTTCAAAAACGCTCTTA 57.086 33.333 0.00 0.0 0.00 2.10
2217 2606 5.813080 ACACTAGTTTCAAAAACGCTCTT 57.187 34.783 0.00 0.0 0.00 2.85
2218 2607 6.018994 CACTACACTAGTTTCAAAAACGCTCT 60.019 38.462 0.00 0.0 36.76 4.09
2219 2608 6.127403 CACTACACTAGTTTCAAAAACGCTC 58.873 40.000 0.00 0.0 36.76 5.03
2220 2609 5.583457 ACACTACACTAGTTTCAAAAACGCT 59.417 36.000 0.00 0.0 36.76 5.07
2221 2610 5.803118 ACACTACACTAGTTTCAAAAACGC 58.197 37.500 0.00 0.0 36.76 4.84
2222 2611 9.757859 TTTTACACTACACTAGTTTCAAAAACG 57.242 29.630 0.00 0.0 36.76 3.60
2246 2635 8.269317 TCCGTCCCATAATATAAGAGTGTTTTT 58.731 33.333 0.00 0.0 0.00 1.94
2247 2636 7.798071 TCCGTCCCATAATATAAGAGTGTTTT 58.202 34.615 0.00 0.0 0.00 2.43
2248 2637 7.369551 TCCGTCCCATAATATAAGAGTGTTT 57.630 36.000 0.00 0.0 0.00 2.83
2249 2638 6.014499 CCTCCGTCCCATAATATAAGAGTGTT 60.014 42.308 0.00 0.0 0.00 3.32
2250 2639 5.480772 CCTCCGTCCCATAATATAAGAGTGT 59.519 44.000 0.00 0.0 0.00 3.55
2251 2640 5.105310 CCCTCCGTCCCATAATATAAGAGTG 60.105 48.000 0.00 0.0 0.00 3.51
2252 2641 5.024118 CCCTCCGTCCCATAATATAAGAGT 58.976 45.833 0.00 0.0 0.00 3.24
2253 2642 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.0 0.00 2.85
2254 2643 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.0 0.00 2.10
2255 2644 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.0 0.00 1.73
2256 2645 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.0 0.00 0.98
2257 2646 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.0 0.00 0.86
2258 2647 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.0 0.00 1.28
2259 2648 3.816842 GCTACTCCCTCCGTCCCATAATA 60.817 52.174 0.00 0.0 0.00 0.98
2260 2649 2.890814 CTACTCCCTCCGTCCCATAAT 58.109 52.381 0.00 0.0 0.00 1.28
2261 2650 1.756690 GCTACTCCCTCCGTCCCATAA 60.757 57.143 0.00 0.0 0.00 1.90
2262 2651 0.178970 GCTACTCCCTCCGTCCCATA 60.179 60.000 0.00 0.0 0.00 2.74
2263 2652 1.457831 GCTACTCCCTCCGTCCCAT 60.458 63.158 0.00 0.0 0.00 4.00
2264 2653 2.043248 GCTACTCCCTCCGTCCCA 60.043 66.667 0.00 0.0 0.00 4.37
2265 2654 1.829096 GAGCTACTCCCTCCGTCCC 60.829 68.421 0.00 0.0 0.00 4.46
2266 2655 0.396001 AAGAGCTACTCCCTCCGTCC 60.396 60.000 0.00 0.0 0.00 4.79
2267 2656 1.026584 GAAGAGCTACTCCCTCCGTC 58.973 60.000 0.00 0.0 0.00 4.79
2268 2657 0.626916 AGAAGAGCTACTCCCTCCGT 59.373 55.000 0.00 0.0 0.00 4.69
2269 2658 3.505835 AGAAGAGCTACTCCCTCCG 57.494 57.895 0.00 0.0 0.00 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.