>input_sequence_84824
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------ATGGGAACGGAGGAGTCGGCGGGGGGCGCCGCGAGGCAGGCGAAGGAGTC
GCTGGAGCTGGCGTTCCAGATGTCCCAGATCCTGGACACTGGCCTCGACCGCCACACCCTCTCGCTGCTCATGGCGCTCT
GCGACCGCGGCACCAACCCGGAGGCTCTCGCTGCCCTCGTCCGCGAGCTGTCCTCCACCGCTCCCCCGTCCGCCTCTGCC
CCCACCGCGCCCGCCTCCAACGCCGTGGCGGCACCGACCGCCCCCTCGCTGTTCCCCTCCGGCTTTCGGCAGCTCTAG--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------
>chr1A_1_TraesCS1A01G246000
CCGCGCCCACCCCCTGTACCCATCTCCAAACCTTCTGTCGCGGGCCATCTCCTCCATGGCGCCCAGGCATCAGCACAACC
ACCGCGCTCTTCCTTCTCCCTTTCCTGTCCTACACCATCCCCTCCTT--AGCATTCTTAATTTACCTTGTACTGTCTTGT
ACCTGTAACTTGGTTCATGTGAGGACCTTTCTGTTCTCTGCTAACTAATTTTTTT-------------------------
------------------------------------------------------------------TTGTTTATGTATTG
TGCAGATTTGTGTTCTTTTATGTCTTGTTGAACTTCGAACTATCTATTTTA-----TA-----TTGAACTTGGAACTATA
TATTAACTACTGCCACGCACTGTTTATGTCAACCATTTGGATCTATCTATTCAAATCGTTGTGATTTATGTCATG-CACG
AGACCATATTTGAGAGTACATGTTGTTTGTTATTGTTTCGAA-TTTGTGTTATGTTATCATAAGAAAATATTGTTGTCAT
TGTATGCCCATTTGTGTTTTCCTGATGCATTTCTATAATATTTATTTATTTTCATTGC-------TATA---TCATTCGT
AGTCAGATTTCATTTTTGAGTCATGTACAACAAGGTATAGCCTGGTAATGTAGCTATGCAATTCCAAAGTTTGTCATCCA
AACAGGATTTGGTATTGAGATCTCAGAGGCATTTCAAGGGCCAATTCACTAGACAACCAAACAGGTGAATTCATATTCGT
GCCATTTCAGTTTCCTCACTGATTTGGAATTCAGACCAATTCAATACGGAGCTCTCCAATGGAGACATCCAAACGAATAG
AATTGTTGAAGAATTGCTATATGTACT-----ATGTAGGCTTCTTTTATGCAAAACTGAGACTTGTATAATTGAGAATTT
TGGTGTGTTTGTAAGACCATATTGATCTATATCTACGTGCTACTGCTAAATTAAATAGAACACTCACATGTCATATTT-G
TTGTCATTTTTT--TGTAGGTGGACCAC----CCTTTTTAAAATTCCTA----GACTCGGCTACCGGAGAGCGGAACTGT
GCCT-------------------GCGCGAGATGGGAACGGAGGAGTCGGCGGGGGGCGCCGCGAGGCAGGCGAAGGAGTC
GCTGGAGCTGGCGTTCCAGATGTCCCAGATCCTGGACACTGGCCTCGACCGCCACACCCTCTCGCTGCTCATGGCGCTCT
GCGACCGCGGCACCAACCCGGAGGCTCTCGCTGCCCTCGTCCGCGAGCTGTCCTCCACCGCTCCCCCGTCCGCCTCTGCC
CCCACCGCGCCCGCCTCCAACGCCGTGGCGGCACCGACCGCCCCCTCGCTGTTCCCCTCCGGCTTTCGGCAGCTCTAGGC
TA---GGGTTCGTGCCCTCGACCCCTTCTTCTCTTTCCTCACGGATGACACCGCTTGCCACTTGATCGCGTTGTATGTGT
G--CACTTAGGTCTTCCATTCTGTAGGCTGAAACTGGTTCGTGATTTGTATTCTCAAGA-------TAAGTAATGCAA-G
GGGGTCTGTGTCAAACTCTGTCACATTCTAGCAAATGATTTTCTCTTCTGTTGGCTGAAATTGCTTCCTGGTTTGTATCC
TCAATATTGATAATGCAATGGAGTCTGT--GTCAAATTCTGTTATCCACATTCTTGCACATGGATTGATTCGTTGGAATT
ATTCATATCA------------------------------------TTTGAAGTACAGTCTACTTATTTGGATCACATGT
ATAACTGTGAATTCCACGTTTAAGTGACTCAAAACATGCCCATGAGTAGAATTGTTGTTATGTCAATGTTCCTTGTTCTG
GAGGCATCCCAATTAGTAGCTCTCCTTTATCATTCGTCTGGTTGTGGTGTAGGCACACGTGTTTCAATCGCTGCTAGATT
CATCATAGTCAAGGACTGAGAATTTGAACTTACCCTTTGTTAAGTTACTCTTTC--TTTATCACTAACGTTTCTACAGTA
GTAAAATGATCACCAAGTTAGCTCATTGTTCTTG----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------AACAAAGGTGGAAGCAAATGGAAATA----ACACAG
TTAGCCGGA--ATGCCCC-------TCACCAGTGGTTGTAAGGTTTGGTTGCATCATGGTTGTAAGGTTTGGCTGCATCA
TTATTGTGAGATTTCAAATACTTTACAAAGTCAGCCTATGCTCCTCCCCAATAGTGTGTGCGGGCTGGCCTGCCCATCGT
AGAATTGT-GAGTTTGACATTTTAACTGC-AGGGAGCGCGCTCATGAGCAGAGTAGTTGTTATGTCAATGTTCTTTGCTC
TAGACTAGAGGCATCCTAATTAGTACTCCCTTCATCCCATGATATAAGAGCGTTTTTGAAACTAGTGTAGTGTAAAAAAC
ACTCTTATATTATGGGACGGAGGGAGTAGCTCTTCT
>chr1D_1
CCGCGCCCACCCCCTGTACCCATCTCCAAACCTTCTGTCGCAGGCCATCTCCTCCATGACGCCCAGGCATCAGCACAACC
ACCGTGCTCTTCCTTCTCCCTTTCCTGCCCTACACCAGCCCCTCCTT--AGCATTCTTAATTTACGTTGTACTGTCTTGT
ACCTGTAAGTTGGTTCATGTGAGGACCTTTCTGTTCCCTGTTAACTAAT--TTTT-------------------------
------------------------------------------------------------------TTGTTTATGTATTG
TGCAGATTTGTGTTCTTTTATGTCTTGTTGAACTTCGAACTATCTATTTTA-----TA-----TTGAACTTGGAACTATA
TATGAACTACTGACGCGCACTGTTTATGTCAAGCATTTGGACCTATCTATTCAAATCGTTGTGATTTATGTCATGTTACG
AGACCATATTTGAGAGTACATGTTGTTTGTTATTGTTTCGAA-TTTGTGTTATGTTATCATAAGAAAATATTGTTGTCAT
TGTATGGCCATTTGTGTTTTCCTGATGCATTTCTAGAATATTTATTTATTTTCATTGC-------TATA---TCATTCGT
AGTCAGATTTCATTTTTGAGTCATGTACAACAAGGTATAGCCTGGTAATGTAGCTATGCAATTCCAAAGTTTGTCATCCA
AACAGGATTTGATATTGAGATCTCAGAGGCATTTCAAGGGCCAATTCACTAGACAACCAAACAGGTGAATTCGTATTCGT
GCCATTTCAGTTTCCTCACTGATTTGGAATTCAGACCAATTCAATACGGATCTCCCCAATGGAGACATCCAAACGAATAG
AATTGTTGAAGAATTGGTATATGTACT-----ATGTAGGCTTCTTTTATGCAAAACTGAGACTTGTATACTTGAGAATTT
TGGTGTGTTTGTAAGACCATATTGATCTATATCTACGCGCTACTGCTAAATTAAATAGAACGCTCACATGTCATATTTTG
TTGTCATTTTTT--TGTAGGTGGACCGC----CCTTTCTAAAATACCTA----GACTCGGCTACCGGAGAGCGGAACTGT
GCCC-------------------GCG--AGATGGGAATGGAGGAGTCTGCGGGGGGCGCCGCGAGGCAGGCGAAGGAGTC
GCTGGAGCTGGCGTTCCAGATGTCCCAGATCCTGGACACCGGCCTCGACCGCCACACCCTCTCGCTGCTCATGGCGCTCT
GCGACCGCGGCGCCAACCCGGAGGCTCTCGCCGCCCTGGTCCGCGAGCTGTCCTCCACTGCTCCCCCGTCCGCCGCTGCC
CCCACCGCGCCCGCCTCCAACGCCGTGGCGGCACCGACCGCCCCCTCGCTGTTCCCCTCCGGCTTTCGGCAGCTCTAGGC
TA---GGGTTCGTGCCCTCGACCCCTTCTTCTTTTTCCTCACGGATGACACCGCTTGCCACTTGATCGCGTTGTATGTGT
G--CACTTAGGTCTTCCATTCTGTAGGCTGAAACTGGTTCGTGATTTGTATTCTCAAGA-------TTAGTAATGCAA-G
GGGGTCTGTGTCAAACTCTGTCACATTCTAGCAAATGATTTTCTCTTCTGTTGGCTGAAATCGCTTCCTGGTTTGTATCC
TCAATATTGATAATGCAATGGAGTCTGT--GTCAAATTCTGTTATCCACATTCTTGCACATGGATTGATTCGTTGGAATT
ATTCATATCATTATATGACACCAATGCAAGAGATTACAGAGACGAATTTGAAGTACAGTCTACTTATTTGGATCACATGT
ATAACTGTGAATTCCACGTTTAAGTGACTCGAAACATGCCCATGAGTAGAATTGTTGTTATGTCAATGTTCCTTGTTCTG
GAGACATCCCAATTAGTAGCTCTCCTTTATCATTC----------------GGCACACGTGTTTCAATCGCTGCTAGATT
CACCATAGTCAAGGGCTGAGAATTTGAACTTACCCTTTGTTATGTTATTCTTTC--TTTATCACTAACGTTTATACATTA
GTAAAATGATCACCAAGTTGCTGTGTGTGCGTGTGTTGCTTTGTTTCCAGGGCTTGTTGAGCTGTGCCCTCGGCATTAAC
CCTATTTCCTACCTTGTATGTCTGTGAGACTTGTGTGTGTGTGTGTGTGTGTTTGAACCTTGTTGGATGTTTGGCTCGGG
CGGTTTGCTTTATAATATAAAGCGGGGCGAAAGCCTTTTTCGGTAACAGAGGTGGAAGCAAATGGAAATA----ACACAG
TTAGCCGGA--ATGCCCC-------TCACCAGTGGTTGTAAGGTTTGGTTGCATCATGGTTGTAAGGTTTGGCTGCATCA
TTATTGTGAGATTTCAAATACTTTACAAAGTCAGGCTATGCTCCTCCCCAATAGTGTGTGCGGGCTGGCCTGCCAATCGT
AGAATTG-TGAGTTCGACATTTTAACTAC-AGGGAGCGTGCTCATGAGCGGAGTAGTTTTTATGCCAATGTTCTTTGCTC
TAGACTAGAGGCATCCTAATTAGTAGCTC---------------------------------------------------
------------------------------------
>chr1B_1
CCGTGCCCACCCCCTGTACCCATCTCCAAACCTTCTGTCGCAGGCCATCTCCTCCATGGCGCCCAGCCATCAGCACAACC
ACCGTGCTGTTCCTTCTCCCTTTCCTGTCCTACACCATCCCCTCCTTAGAGCATTCTTAATTTACCTTGTACTGTCTTGT
ACCTGTAACTTGGTTCACGTGAGGACCTTTCTGTTCTCTGTTAACTAATTTCTTTTTGTTTATGTATTGTGCAGATTTGT
GAACTGTCCGTCGATCTGCAGGCCGATTGAAGGTATATGGCCGAAATTCCCTATGTTTGCTATGTCTTGTTTATGTATTG
TGCAGATTTGTGTTCTTTTATGTCTTGTTGAACTTCGAACTATCTATTTTA-----TA-----TTGAACTTGGAACTATA
TATGAACTACTGCCACGCACTGTTTATGTCAAGCATTTGGACCTATCTATTCAAATCGCTGTGATTTATGTCATG-TACG
AGACCATATTTGAGAGTACATGTT---TGTTATTGTTTCGAA-TTTGTGTGATGTTATCATAAGAAAATATTGTTGTCAT
TGTATGACCATTTGTG-TTTTCCTGTGCATTTCTAGAGTATTTATTTATTTA-TTTTCATTGCTATATATATTCATTCGT
AGTCAGATTTCATTTTTGAGTCATGTACAACAAGGTATAGCCTGGTAATGTAGCTATGCAATTCCAAAGTTTGTCATCCA
AACAGGATTTGGTATTGAGATCTTAGAGGCATTTCAAGGGCCAATTCACTAGACAACCAAACAGGTGAATTCGTATTCGT
GCCATTTCAGTTTCCTCACTAGTTTGGAATTCAGACCAATTCAATACGGAGCTCTCCAATGGAGACATCCAAACGAATAG
AATTGTTGAAGAATTGGTATATGTACT-----ATGTAGGCTTCTTTTATGCAAAACTGAGGCTTCTATAATTGAGAATTT
TGGTGTGTTTGTAAAACCATATTGATCTATCTCTATGTGCTACTGCTAAATTAAATAGAACGCTCACATGTCATATTT-G
TTGTCATTTTTT--T--AGGTGGACCAC----CCTTTTTAAAATTCCTA----GACTCGGCTACCGGAGAGCGGAACTGT
GCCC-------------------GCGCGAGATGGGAATGGAGGAGTCGGCGGGGGGCGCCGCGAGGCAGGCGAAGGAGTC
GCTGGAGCTTGCGTTCCAGATGTTCCAGATCCTGGACACCGGCCTCGACCGCCACACCCTCTCGCTGCTCATGGCGCTCT
GCGACCGCGGCGCCAACCCGGAGGCTCTCGCCGCCCTTGTTCGCGAGCTGTCCTCCACCGCTCCCCCGTCCGCCGCTGCT
CCCACCGCGCCCGCCTCCAACGCCGTGGCGGCACCGACCGCCCCCTCGCTGTTCCCCTCCAGCTTTCGGCAGCTCTAGGC
TA---GGGTTCGTGCCCTCGACCCCTTCTTCTTTTTCCTCATGGATGACACCTCTTGCCACTTGATCGCGTTGTATGTGT
GTGCACTTAGGTCTTCCATTCTGTAGG-------------------------CTCAGGA-------TTAGTAATGCAA-G
GGGATCTGTGTCAAACTC-GTCACATTCTAGCAAATGATTTTCTCTTCTGTTGGCTGAAATTGCTTCCTGGTTTGTATCC
TCAATATTGATAATGCAATGGAGTC--T--GTCAAATTCTGTTATCCACATTCTTGCACATGGATTGATTCGTTGGAATT
ATTCATATCATTATATGACACCAATGCAA--GATTACAGAGACGAATTTGAAGTACAGTCTACTTATTTGGATCACATGT
ATAACTGTGAACTCCACGTTTAAGTGGCTCCAAACATGCCCATGAGTAAAATTGTTGTTATTTCAATGTTCCTTGTTCTG
GAGGCATCCCAATTAGTAGCTCTCCTTTATCATTCGTCTGGTTGTGGTGTAGGCACATGTGTTTCAATCGCTGCTAGATT
CATCATAGTCAAGGACTGAGAATTTGAGCTTACCCTTTGTTATGTTATTCTTTC--TTTATCACTGACGTTTCTACAGTA
GTAAAATTATCACCAAGTTAGCTCATTGTTCTTG----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------AACAAAGGTGGAAGCAAATGGAAATA----ACACAG
TTAGCCGGA--ATGCCCC-------TCACCAGTGGTTGTAAGGTTTGGTTGCATCATGGTTGTAAGGTTTGGCTGCATCA
TTATTGTGAGATTTCAAATACTTTACAAAGCCAGCCTATGCTCCTCCCCGATAGTGTGTGCGGGCTGGCCTGCCCATCGT
AAAATTGTTGAGTTCGACATTTTAACTAC-AGGGAGCATGCTCATGAGCA---TAGTTGTTATGTCAATGTTCTTTGCTC
TAGACTAGAGGCATCGTAATTAGTA-------------------------------------------------------
------------------------------------
>chr7B_242
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------CTTTTATGTGTTGTTGAACTTAGAACCATCTATTTTA-----TGTCATGTTGAACTTGGAACTATG
TATG---TACTGGCACACACTATTTATGTCAAGCGTTTGGACCTATCT-TTTAAATTGTTGTGATTTATGTCATG-TACG
AGACCATATTTGAGAGTACGTGCTATGTGTTTTTTTTTTGAA-TTTGTGTTATGTTATCGTAAGAAAATATTGTTTTGAT
TGTAGGACCATTTGTG-TTTCCTGATGCATTTCTAGAATATTTAATTATTTTCATCG-------ATATATATTCATTTGT
AGTCACATTTCATTTATGAGTCATGTAGAACAAGGTATAACCTGGTAATGTAGCTATGCATTTCCAAAGTTTGTCAACCA
AACAAGATTCTGTATTGAAATCTCAGAGGCATTTCAACGGCCAATTCACTGGACAACCAAACAGGTGAATTCATATTCGT
GCCATTTCAGTTTCCTCACTGATTTGGAATTCAGACCAATTCAATACAGAGCTCTCCAATGGAGACATCCAAATGAA---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------
>chr3D_242
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------CTTTTATGTGCTGTTGAACTTTGAACCATCTATTTTA-----TGTCATGTTGAACTTAGAACTATG
TATG---TACTGCCACGCACTGTTTATGTCAAGCATTTGGACCTATCT-TCTAAATTGTTGTGATTTATGTCATG-TATG
AGACCACATTTGAGACTACATTCTATTTGTTATTGTTTCGAATTTTGTGTTATGTTATCGTAAAAAAATATTGTTGTCAT
TCTATCATCATTTGTG-TTTCCTGATGCATTTCTAGAATATTTAATTATTTT-ATTGC-------TATACATTCATTCAT
AGTCAGATTTCATTTTTGAGTGATGTAGAACAAGGTATAACCTGGTAATGTAGCTATGCAATTCCAAAGTTTGTCATCCA
AACAAGATTCTGTATTGAAATCTCAGAAGCATTTTAAGGGCCAATTCGCTGGACAACCAAACAGATGAATTCGTATTCGT
CCCATTTCAGTTTCCTCACTGATTTGGAATTCAGGCCAATTCAATACGGAGCTCTCCAATGGAGACATCCAAACGAA---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------
>chr6D_243
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------TTTTATGTCATGTTCAACTTGGAACTATGCATGTACTGCCT-----TGTTGAACTTGGAACTATG
TATG---TACTGCCATGCACTGTTTATGTCAAGCATTTGGACCTATGT-TCTAAATTGTTGTGATTTATGTCATG-TACG
AGACCATATTTGAGAGTACATGCTATTTGTTATTGTTTCGAATTTTGTGTTATGTTATCGTAAAAAAATATTGTTGTCAT
TGTATCACCATTTGTG-TTTCCTGATGCATTTCTAGAATATTTAATTATTTT-ATTTC-------TATATATTCATTCAT
AATCAGATTTCATTTTTGAGTGATGTAGAACAAGGTATAACCTGGTAATGTAGCTATGCAATTCCAAAGTTTGTCATCCG
AACAAGATTCTGTATTGAAATCTCAGAGGCATTTCAAGGGCCAATTCGCTGGACAACCAAACAGGTGAATTCGTATTCGT
CCCATTTCAGTTTCCTCACCGATTTGGAATTCAGGCCAATTCAATACGGAGCTCTCCAATGGAGACATCCAAACGAA---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------
>chr4D_243
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------TTTTATGTCATGTTGAACTTGGAACTATGTATGTACTGCCT-----TGTTGAACTTGAAACTATG
TATG---TACTGCCATGCACTATTTATGTCAAGCACTTGGACCTATCT-TCTAAATTGTTGTGATTTATGTCATG-TACG
AGACCATATTTAAGAGTACGTGTTATTTGTTATTGTTTCTAATTTTGTGTTATGTTATCGTAAAAAAATATTGTTGTCAT
TGTATCACCATTTGTG-TTTCCTGATGCATTTCTAGAATATTTAATTATTTT-ATTGC-------TATATATTCATTCAT
AGTCAGATTTCATTTTTGAGTGATGTAGAACAAGGTATAACCTGGTAATGTAGCTATGCAATTCCAAAGTTTGTCATCCA
AACAAGATTCTGTATTGAAATCTCAGAGGCATTTCAAGGGACAATTCACTGGATAACCAAACAGGTGAATTCGTATTCGT
TCCATTTTAGTTTCCTCACCGATTTGGAATTCAGGCCAATTCAATACAGAGCTCTCCAATGGAGACATCCAAACGAA---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------
>chr3A_243
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------TTTTATGTCATGTTGAACTTTGAACTATGTATGTACTGCCT-----TGTTGAACTTGGAACTATG
TATG---TACTGCCACGCACTGTTTATGTCAAGCATTTGGACCTATCT-TCTAAATTGTTGTGATTTATATCATG-TACG
AGACCATATTTGAGACTACATGCTATTTGTTATTGTTTCAAATTTTGTGTTATGTTATCGCAAAAA-ATATTGTTCTCAT
TGTATCACCATCTGTG-TTTCCTGATGCATTTCTAGAATATTTAATTATTTT-ATTGC-------TATATATTCATTCAT
AGTCAGATTTTATTTTTGAGTGATGTAGAACAAGGTATAACCTGGTAATGTAGCTATGCAATTCCAAAGTTTGTCATCCA
AACAAGATTCTGTATTGAAATCTCAGAGGCATTTCAAGGGCCAATTTGCTGGACAACCAAACAGGTGAATTCGTATTCGT
CCCATTTCAGTTTCCTCGCTGATTTGGAATTCAGGCCAATTCAATACGGAGCTCTCCAATGGAGACATCCAAATGAA---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------
>chr4B_243
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------TTTTATGTCATGTTGAACTTGGAACTATGTATGTACTGCCC-----TGTTGAACTTGGAACTATG
TATG---TACTGTCATTCACTGTTTATGTCAAGCATTTGGACCTATCT-TCTAAATTGTTGTGATTTATGTCATG-TACG
AGACCATATTTGAGACTACATGCTATTTCTTATTGTTTCGAATTTTGTGTTATGTTATCGTAAAAATATATTGTTGTCAT
TCTATCACCATTTGTG-TTTCCTGATGCTTTTCTAGAATATTTAATTATTTT-ATTGC-------TATACATTCATTCAT
AGTCAGATTTCATTTTTGAGTGATGTAGAACAAGGTATAACCTGGTAATGTAGCTATGCAATTCCAAAGTTTGTCATCCA
AACAAGATTCTGTATTGAAATCTCAGAGGCATTTCAAGGGCCAATTCGTTGGACAACCAAACATGTGAATTCGTATTCGT
CCCATTTCAGTTTCCACACTGATTTGGAATTCAGGCCAATTCAATACGGAGCTCTCCAATGGAGACATCCAAACG-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------
>chr2B_243
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------TTTTATGTCATGTTGAACTTGGAACTATCTATGTACTGCCTTA-----TTGAACTTGGAACTATG
TATG---TACTGCCATGCACTGTTTATGTCAAGCATTTGGACCTATCT-TCTAAATTGTTGTGATTTATGTCATG-TACG
AGACCATATTTGAGACTACATGCTATTTCTTATTGTTTAGAATTTTGTATTATGTTATCGTAAAAATATATTGTTGTCAT
TCTATCACCATTTGTG-TTTCCTGATGCTTTTCTAGAATATTTAATTATTTT-ATTGC-------TATATATTCATTCAT
AGTCAGATTTCATTTTTGAGTGATGTAGAACAAGGTATAACCTGGTAATGTAGCTATGCAATTCCAAAGTTTGTCATCCA
AACAAGATTCTGTATTGAAATCTCGAAGGCATTTCAAGGGCCAATTCGTTGGACAACCAAACATGTGAATTCGTATTCAT
CCCATTTCAGTTTCCACACTGATTTGGAATTCAGGCCAATTCAATACGGAGCTCTCCAATGGAGACATCCAAACGAA---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------
>chr5D_762
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------ATAG
AATTGTTGAAGAAGTGG--TATGTACT-----ATGTAGGCTTCTTTTATGCAAAACTGACACTTGTATAATTGAGAATTT
TGGTGTGTTTGTAAGACCATATTGATCTATATCTGCGTGCTACTGGTAAATTAATTAGAACGTTCACATGTCATATCT-G
GTGTCACTTTTTTGT--AGGTGTACCAC----CCTGTTTTAAATTCCTA----GATCCGGCTACCGGAGAGCGGAGCTGT
GCCCG-----------------CGCG--AGATGGGGATGGAGGAGTCCGCGGGGGGCGCCGCGAGGCAGGCCAAGGAGTC
GCTGGAGCTGGCGTTCCAGATGTCCCAGATCCTGGACACTGGCCTCGACCGCCACACCCTCTCGCTGCTCATGGCGCTCT
GCGACCGCGGCGCCAACCCGGAGGCCCTCGCCGCCCTCGTCCGTGAGCTCTCCTCCGCCGCTCCCCTGGCCCCCGCCACC
CCCACCGCGCCCGCCTCAAACGCCGTGGTGGCCCCGACCGCTCCCTCGCTGTTCCCCTCCGGCTTTCGCCAGGTCTAGGC
TACTAAGGTTCGTGCCCTCGACCCCTTCTTCTTTTTCCTCCCAGATTGA-----TTGTCACTTGATTGCGTTGTATGTGT
G--CATGTAGGCCTTCCATGCTGTATGCTGAAACTGGTTCCTGATTTGTATTCTCAAGA-------CTGGTAATGCAA-G
GGGGTCTGTGTCAAACTCTGTCACACTCTAGCAAATGATTTTCTCTTCTGTTGGCTGAAATTGCTTCCTGGTTTGTATCC
TCAGTATTGATAATGCAATGGAGTC--TGTGTCAAATTCTGTTATCCACATTCTTGCACATGGATTCATTCGTTG-AATT
ATCCATATCGT--TATGACACCAATGCAA--GATTGCAGAGACGAATTTGAAATACAATCTACTTATTTGGATCACCTGT
ATAATTGTGAATTCCATGTTTAAGTGACTCGAAACATGCCCATGAGTAGAATTGTTGTTATGTCAGTGTTCCTTGTTCTG
GAGGCATCCCAATTAGT---TCTTCTTTATCATTCGTTTGGTTGTGATGTAGGCACACGTGTTTCAATCGCTGCTAGATT
CATCATATTCAAGGACTGAGCATTTGAACTCACCCTTCATTATGTTATTCTTTTCTTTTATCACTAACGTGTATACAGTA
GTAAAATGATCACCAAGTTAGCTCGTTGTCCTTG----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------AACAAATGTGGAAGCAAATGGAAATA----ACACAG
TTAGCCGGCCTATGCCCCTCACCAGTCACCAGTGGTTGTAAGGTTTGGTTGCATCAT-----------------------
-TATTGTGAGATTTCAAATACTTTACAAAGTCAGCCTATGCTCCTCCCCAATAGTGTATGCGGGCTGGCCTGCCCATCGT
AGAATTG-TGAGGTCGACATTTTAACTAC-AGGGAGCGTGCTCATGAGCAGAGTAGTTGTTATGTCAATGTTCTTTGTTC
TAGACTAGAGGCATCCTAATTAGTAGCTC---------------------------------------------------
------------------------------------
>chr5B_763
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------TAG
AATTGTTGAAGAACTGG--TAGGTATGTACTAATGTAGGCTTCTTTTATGCAAAACTGAGACTTGTATAATTGAGAATTT
TAGTGTGTTTGCAAGACCATATTGACCTATATCTACATGCTACTGGTAAATTTATTAGAACGTTCACATGTCATATTT-G
TTGTCAATTTTGTGT--AGGTGGACCAC----CCTTTTTAAAATTCCTACTTAGATCCAGCTACCGGAGAGCGGAACCGT
GCCTG-----------------CCCA--AGATGGGAATGGAGGAGTCGGCGGGGGGCGCCGCGAGGCAGGCCAAGGAGTC
GCTGGAGCTGGCGTTCCAGATGTCCCAGATCCTCGACACCGGCCTCGACCGCCACACCCTCTCGCTGCTCATGGCGCTCT
GCGACCGCGGCGCCAACCCGGAGGCCCTCGCCGCCCTCGTCCGCGAGCTCTCCTCCACCGCTCCCCCGGCCCCCGCCACC
CCCACCGCGCCCGCCTCCAACGTCGTGGCGGCCCCGACCGCTCCCTCGCTGTTCCCCTCCGGCTTTCGCCAGCTCTAGGC
TACTAGGGTTCGTGCCCTCGACCGCTTCTTCTTTTTCCTCCCAGATGACACCGCTTGTCACTTGATCGCCTTGTACGTGT
G--CACCTAGGCCTTCCATCCTGTATGCTGAAACTGGTTCCTGATTTGTATTCTCAAGA-------TTGATAATGCCA-G
GGGGTCTGTGTCAAACTCTCTCACACTCTAGCAAATGATTTTCTCTTCTGTTTTCTGAAATCGCTTCCTGGTGTGTATCC
CCAATATTGATAATGCAATGGAATC--T--GTCAAATTCTGTTATCCACATTCTTGCACATGGATTCATTCATTGGAATT
ATCTATATCGT--TATGACACCAATTCAA--GATTGCAGAGACGAATTTGAAATACAGTCTACTTATTTGGATCACCTGT
ATAATTGTGAATTCCATGTTTAAGTGACTCGAAACATGCCCATGAGTAGAATTGTTGTTATGTCAATGTCCCTTGTTCTG
AAGGCATCCCAATTAGTAGCTCTTCTTTATCATTCGTTTGGTTGTGGTGTAGGCACACGTGTTTCAATCGCTGCTAGATT
CATTATATTCAAGGACTGAGAATTTGAACTTACCCTTCGTTATGTTATTCTTTTCTTT-ATCACTAATGTTTATACAGTA
GTAAAATGATCACCGAGTTAGCTCATTGTCCTTG----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------AACAAAGGTGAAAGCAAATGGAAATACTTTACACAG
TTAGCCGGCCTATGCTCC-------TCACCAATGGTTGTAAGGTTTGGTTGCATCAT-----------------------
-TATTGTGAGGTTTCAAATACTTTACAAAGTCAACCTATGCCTCTCCCCAATAGTGTATGCGGGCTGGCCTGCCCATCGT
AGAATTG-TGAGTTCGACATTTTAACTAC-AGGGACCGTGCTCATGAGCAGAGTGGTTGTTGTGTCAATGTTCTTTGTTC
TAGACTAGAGGCATCCTAGTTAGTAGCTC---------------------------------------------------
------------------------------------
>chr5A_892
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------TAATTAGAACGTTCACATGTTGTATTT-G
TTGTCGTTTTTT--TTTTGTAGGTAGAGTCCACCTGTTTTAAATTCCTA----GATCTGGCTAGCGGAGAGCGGAAGGGG
AAGCCGACGGCGACCGCGCCCCCGTG--AGATGGGAATGGAGGAGTCGGCGGGGGGTGCCGCGAGGCAGGCCAAGGAGTC
GCTGGAGCTGGCGTTCCAGATGTCCCAGATCCTGGACACCGGCCTCGACCGCCACACCCTCTCGCTGCTCATGGCGCTCT
GCGACCGCGGCGCCAACCCGGAGGCCCTCGCCGCCCTCGTCCGCGAGCTCTCCTCCGCCGCTCCGCCGTCTGCCGC---C
GCCACCGCACCCGCCTCCAACACCACAGCGGCCCCGGCCACCCCCTCGTTGTTCCCCTCCGGCTTTCGCCAGCTCTAGGC
TACTAGGGTTCGTGCCCTCGACTC---CTTCTTTTTCCTCCCAGATGACACCGCTTGTCACTTGATGGCGTTGTGTGTGT
G--CACGTAGGCCTTCCATGCTGTATGCTGAAACTGGTTCCTGATTTGTATTCTCGAGAATCGAGATTGGTAATGCAAGG
GGGGTCTGTGTCAAACTCTGTCACGCTCTAGCAAATGATTTTCTCTTCTGTTGGCTGAAATTGCTTCCTGGTTTGTATCC
TCAAGATTGATAATGCAATGGAGTCTGT--GTCAAATTCTGTTATCCACATTCTTGCACATGGATTGATTCGTTGGAGTT
ATCCATATCGT--TATGACACCAATGCAA--GATTGCAGAGACGAATTTGAAATACGGTCTACTTATTTGGGTCACCTGT
ATAAATATGAATTCCACGTTTAAGTGACTGGAATCATTCCCATGAGTAGAATTGTTGTTATGTCAATGTTCCTTGTTTTG
GAGGCATCCCAATTAGTAGCTATTCTTTATCATTCGTTTGGCTGAGGTGTCTACACACATGTTTCAATCATTGCTAGATT
CATCATATTCAAGGACTGAGCATTTGAACTCACCTTTCATTGTGTTATTATTTTCTTT-ATCACTAATGTTTATACAGTA
GTAAAATGATCACCAAGTTAGCTCATTGTCCTTG----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------AACAAAGGTGGAAGCAAATGGAAATACTTTACACAG
TTAGCCTGCCTATGCTCC-------TCACCAATGGTTGTAAGGTTTGGTTGCATCAT-----------------------
-TATTGTGAGATTTTGAATACTCTACAAAGTCTGCCTATGCTCCTCCCAAATAGTGTTTGCGGGCTGGCCTGCCCATCGT
AGAATTG-TGAGTTCGACATTTTAACTACAAGGGAGCGTGCTCATGAGCAGAGTGGTTGTTATGTCAATGTTCTTTGTTC
TAGACTAGAGGCATCCTAATTAGTAGCTC---------------------------------------------------
------------------------------------
>SNPs
-----------------------------------------S--------------------------------------
----S---------------------------------------------------------------------------
----------------------------------------S---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---S----------------------------S--------S----------------------------------S---
--------------------------------------------------------------------------------
------S----------------------------S--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------S---------------------------------------------------------------
-------------------------------------------------------------S------------------
--------------------------------------------------------------------------------
-------------------------------------S------------------------------------------
--------------------------------------------------------------------------------
-----------S-------------------S------------------------------------------S-----
--------------------------------------------------------------------------------
--------------------------------S-----------------------------------------------
-------------------------------------------------------------------S------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------S-------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------S----S--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------S------------S----------S-----------------------------------------
-------------------------SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_42
----------------------TCTCCAAACCTTCTGTCGCG--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------
>reverse_1588
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------AAGTAATGCAAGG
GGGTCTGT------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------
