Multiple sequence alignment - TraesCS1A01G241800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G241800 chr1A 100.000 3646 0 0 1 3646 430005851 430009496 0.000000e+00 6734.0
1 TraesCS1A01G241800 chr1A 97.959 98 2 0 537 634 464800416 464800319 1.740000e-38 171.0
2 TraesCS1A01G241800 chr1A 97.436 39 1 0 3321 3359 310256867 310256829 2.350000e-07 67.6
3 TraesCS1A01G241800 chr1B 85.083 2353 165 69 630 2899 446950933 446953182 0.000000e+00 2230.0
4 TraesCS1A01G241800 chr1B 90.614 554 27 5 1 539 446950394 446950937 0.000000e+00 712.0
5 TraesCS1A01G241800 chr1B 90.137 365 34 2 3278 3641 446953386 446953749 1.180000e-129 473.0
6 TraesCS1A01G241800 chr1B 88.889 135 5 5 3095 3221 446953253 446953385 1.360000e-34 158.0
7 TraesCS1A01G241800 chr1B 93.939 66 3 1 2926 2991 446953186 446953250 8.330000e-17 99.0
8 TraesCS1A01G241800 chr1B 97.436 39 1 0 3321 3359 341129979 341130017 2.350000e-07 67.6
9 TraesCS1A01G241800 chr1D 87.692 1365 97 39 630 1974 332265632 332266945 0.000000e+00 1524.0
10 TraesCS1A01G241800 chr1D 86.395 1176 88 34 1988 3112 332267010 332268164 0.000000e+00 1219.0
11 TraesCS1A01G241800 chr1D 89.744 546 28 4 12 539 332265101 332265636 0.000000e+00 673.0
12 TraesCS1A01G241800 chr1D 90.391 281 27 0 3275 3555 332268981 332269261 1.600000e-98 370.0
13 TraesCS1A01G241800 chr1D 98.387 62 1 0 3108 3169 332268334 332268395 3.850000e-20 110.0
14 TraesCS1A01G241800 chr6A 98.000 100 2 0 537 636 37459080 37459179 1.350000e-39 174.0
15 TraesCS1A01G241800 chr5D 96.190 105 4 0 529 633 527570693 527570797 4.840000e-39 172.0
16 TraesCS1A01G241800 chr5D 96.190 105 4 0 529 633 527600256 527600360 4.840000e-39 172.0
17 TraesCS1A01G241800 chr5D 97.959 98 2 0 536 633 460172470 460172373 1.740000e-38 171.0
18 TraesCS1A01G241800 chr5D 97.000 100 3 0 537 636 180472158 180472059 6.260000e-38 169.0
19 TraesCS1A01G241800 chr4D 97.959 98 2 0 537 634 498396736 498396833 1.740000e-38 171.0
20 TraesCS1A01G241800 chr2A 94.495 109 5 1 528 636 240459563 240459670 2.250000e-37 167.0
21 TraesCS1A01G241800 chr5B 92.920 113 6 2 527 639 625959453 625959563 2.910000e-36 163.0
22 TraesCS1A01G241800 chr2B 97.222 36 0 1 3325 3360 184138997 184138963 3.930000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G241800 chr1A 430005851 430009496 3645 False 6734.0 6734 100.0000 1 3646 1 chr1A.!!$F1 3645
1 TraesCS1A01G241800 chr1B 446950394 446953749 3355 False 734.4 2230 89.7324 1 3641 5 chr1B.!!$F2 3640
2 TraesCS1A01G241800 chr1D 332265101 332269261 4160 False 779.2 1524 90.5218 12 3555 5 chr1D.!!$F1 3543

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
635 657 0.042131 TTGGGACGGAGGGAGTACAT 59.958 55.0 0.00 0.00 0.0 2.29 F
1100 1135 0.105142 ACGCCCCCACATATACTCCT 60.105 55.0 0.00 0.00 0.0 3.69 F
1498 1537 0.176680 ACGCCATCTTCGAGCTCATT 59.823 50.0 15.40 0.00 0.0 2.57 F
2394 2528 0.177604 CCCTCTAGTGCAGGCTCTTG 59.822 60.0 0.82 0.14 0.0 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2114 2236 0.178992 TACTGCAGCTGCCCTTGTTT 60.179 50.0 34.64 13.55 41.18 2.83 R
2428 2562 0.326264 GGTGATCCTGTGGAACTGCT 59.674 55.0 0.00 0.00 38.04 4.24 R
2429 2563 1.021390 CGGTGATCCTGTGGAACTGC 61.021 60.0 0.00 0.00 38.04 4.40 R
3616 4471 0.326522 TGGGCTGGCCAGAATCTAGA 60.327 55.0 37.21 8.87 37.98 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 4.522405 TGGAAACAAAGTCATGGTACATGG 59.478 41.667 9.15 0.00 40.50 3.66
192 193 9.581289 TGGAGGTCTATATTTCAAGAACAAAAA 57.419 29.630 0.00 0.00 31.55 1.94
304 305 0.617413 AACTCTGGCTGGTGGATGAG 59.383 55.000 0.00 0.00 0.00 2.90
308 309 2.352422 GGCTGGTGGATGAGCACA 59.648 61.111 0.00 0.00 36.90 4.57
310 311 2.404995 GCTGGTGGATGAGCACAGC 61.405 63.158 0.00 0.00 46.24 4.40
361 374 4.701765 CAAGCTGTACATCTATCCTTGCT 58.298 43.478 0.00 0.00 0.00 3.91
380 396 3.577667 GCTGCAGCATCACAATTTTGTA 58.422 40.909 33.36 0.00 39.20 2.41
382 398 3.577667 TGCAGCATCACAATTTTGTAGC 58.422 40.909 0.00 1.81 39.91 3.58
417 433 3.874392 CCAGATGTTGGGTGATTTTCC 57.126 47.619 0.00 0.00 43.75 3.13
448 464 6.591062 CCACATGGAATTCAACAATCGAATTT 59.409 34.615 7.93 0.00 41.87 1.82
455 471 7.382218 GGAATTCAACAATCGAATTTGAACACT 59.618 33.333 16.98 8.54 41.87 3.55
456 472 7.627585 ATTCAACAATCGAATTTGAACACTG 57.372 32.000 16.98 0.00 40.95 3.66
463 479 2.476185 CGAATTTGAACACTGGATCCGC 60.476 50.000 7.39 0.00 0.00 5.54
480 502 0.935898 CGCATGCAGAAGACTCCATC 59.064 55.000 19.57 0.00 0.00 3.51
501 523 1.204146 GTACATCAAGGCCCTCAGGA 58.796 55.000 0.00 0.00 33.47 3.86
506 528 0.252696 TCAAGGCCCTCAGGAGCTAA 60.253 55.000 0.00 0.00 33.47 3.09
522 544 3.269178 AGCTAAGCTTTCTCATGCAGTC 58.731 45.455 3.20 0.00 33.89 3.51
539 561 4.284490 TGCAGTCCATCTTTCTGAAGTACT 59.716 41.667 0.00 0.00 34.41 2.73
540 562 4.867608 GCAGTCCATCTTTCTGAAGTACTC 59.132 45.833 0.00 0.00 34.41 2.59
542 564 4.468153 AGTCCATCTTTCTGAAGTACTCCC 59.532 45.833 0.00 0.00 34.41 4.30
543 565 4.468153 GTCCATCTTTCTGAAGTACTCCCT 59.532 45.833 0.00 0.00 34.41 4.20
544 566 4.712337 TCCATCTTTCTGAAGTACTCCCTC 59.288 45.833 0.00 0.00 34.41 4.30
545 567 4.141824 CCATCTTTCTGAAGTACTCCCTCC 60.142 50.000 0.00 0.00 34.41 4.30
546 568 3.090037 TCTTTCTGAAGTACTCCCTCCG 58.910 50.000 0.00 0.00 34.41 4.63
547 569 2.599408 TTCTGAAGTACTCCCTCCGT 57.401 50.000 0.00 0.00 0.00 4.69
548 570 2.125773 TCTGAAGTACTCCCTCCGTC 57.874 55.000 0.00 0.00 0.00 4.79
549 571 1.104630 CTGAAGTACTCCCTCCGTCC 58.895 60.000 0.00 0.00 0.00 4.79
550 572 0.324091 TGAAGTACTCCCTCCGTCCC 60.324 60.000 0.00 0.00 0.00 4.46
551 573 0.324091 GAAGTACTCCCTCCGTCCCA 60.324 60.000 0.00 0.00 0.00 4.37
552 574 0.115745 AAGTACTCCCTCCGTCCCAA 59.884 55.000 0.00 0.00 0.00 4.12
553 575 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
554 576 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
555 577 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
556 578 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
557 579 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
558 580 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
559 581 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
560 582 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
561 583 2.026636 CCCTCCGTCCCAAAATAAGTGA 60.027 50.000 0.00 0.00 0.00 3.41
562 584 3.007635 CCTCCGTCCCAAAATAAGTGAC 58.992 50.000 0.00 0.00 0.00 3.67
563 585 3.307480 CCTCCGTCCCAAAATAAGTGACT 60.307 47.826 0.00 0.00 0.00 3.41
564 586 3.933332 CTCCGTCCCAAAATAAGTGACTC 59.067 47.826 0.00 0.00 0.00 3.36
565 587 3.325425 TCCGTCCCAAAATAAGTGACTCA 59.675 43.478 0.00 0.00 0.00 3.41
566 588 4.069304 CCGTCCCAAAATAAGTGACTCAA 58.931 43.478 0.00 0.00 0.00 3.02
567 589 4.083484 CCGTCCCAAAATAAGTGACTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
568 590 4.755123 CGTCCCAAAATAAGTGACTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
569 591 5.238650 CGTCCCAAAATAAGTGACTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
570 592 6.238648 CGTCCCAAAATAAGTGACTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
571 593 7.041644 CGTCCCAAAATAAGTGACTCAACTTTA 60.042 37.037 0.00 0.00 40.77 1.85
572 594 8.074370 GTCCCAAAATAAGTGACTCAACTTTAC 58.926 37.037 0.00 0.00 40.77 2.01
573 595 7.776030 TCCCAAAATAAGTGACTCAACTTTACA 59.224 33.333 0.00 0.00 40.77 2.41
574 596 7.860872 CCCAAAATAAGTGACTCAACTTTACAC 59.139 37.037 0.00 0.00 40.77 2.90
575 597 8.621286 CCAAAATAAGTGACTCAACTTTACACT 58.379 33.333 0.00 0.00 40.77 3.55
581 603 8.788325 AAGTGACTCAACTTTACACTAACTTT 57.212 30.769 0.00 0.00 40.23 2.66
582 604 8.197988 AGTGACTCAACTTTACACTAACTTTG 57.802 34.615 0.00 0.00 39.52 2.77
583 605 7.822822 AGTGACTCAACTTTACACTAACTTTGT 59.177 33.333 0.00 0.00 39.52 2.83
584 606 9.090692 GTGACTCAACTTTACACTAACTTTGTA 57.909 33.333 0.00 0.00 0.00 2.41
585 607 9.090692 TGACTCAACTTTACACTAACTTTGTAC 57.909 33.333 0.00 0.00 0.00 2.90
586 608 9.310716 GACTCAACTTTACACTAACTTTGTACT 57.689 33.333 0.00 0.00 0.00 2.73
620 642 9.673454 GTACAAAGTTAAGTCACTTATTTTGGG 57.327 33.333 24.61 11.73 35.87 4.12
621 643 8.528044 ACAAAGTTAAGTCACTTATTTTGGGA 57.472 30.769 24.61 1.03 35.87 4.37
622 644 8.410912 ACAAAGTTAAGTCACTTATTTTGGGAC 58.589 33.333 24.61 10.71 35.87 4.46
623 645 6.796705 AGTTAAGTCACTTATTTTGGGACG 57.203 37.500 0.00 0.00 33.84 4.79
624 646 5.704053 AGTTAAGTCACTTATTTTGGGACGG 59.296 40.000 0.00 0.00 33.84 4.79
625 647 4.360951 AAGTCACTTATTTTGGGACGGA 57.639 40.909 0.00 0.00 33.84 4.69
626 648 3.939066 AGTCACTTATTTTGGGACGGAG 58.061 45.455 0.00 0.00 33.84 4.63
627 649 3.007635 GTCACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
628 650 2.026636 TCACTTATTTTGGGACGGAGGG 60.027 50.000 0.00 0.00 0.00 4.30
629 651 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
630 652 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
631 653 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
632 654 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
633 655 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
634 656 0.178926 TTTGGGACGGAGGGAGTACA 60.179 55.000 0.00 0.00 0.00 2.90
635 657 0.042131 TTGGGACGGAGGGAGTACAT 59.958 55.000 0.00 0.00 0.00 2.29
636 658 0.042131 TGGGACGGAGGGAGTACATT 59.958 55.000 0.00 0.00 0.00 2.71
644 666 5.812286 ACGGAGGGAGTACATTTTTGTAAT 58.188 37.500 0.00 0.00 0.00 1.89
650 672 8.122472 AGGGAGTACATTTTTGTAATTGGAAG 57.878 34.615 0.00 0.00 0.00 3.46
679 701 3.492011 GTCGAGGAGACGAGTAAGATCTC 59.508 52.174 0.00 0.00 42.88 2.75
681 703 3.493129 CGAGGAGACGAGTAAGATCTCAG 59.507 52.174 0.00 0.00 40.61 3.35
694 716 4.726035 AGATCTCAGGGCATGAATGAAT 57.274 40.909 2.54 0.00 37.52 2.57
697 719 4.362470 TCTCAGGGCATGAATGAATAGG 57.638 45.455 2.54 0.00 37.52 2.57
707 729 5.625197 GCATGAATGAATAGGTTTTGTGGCT 60.625 40.000 0.00 0.00 0.00 4.75
715 737 7.047891 TGAATAGGTTTTGTGGCTATGAGTAG 58.952 38.462 0.00 0.00 0.00 2.57
770 792 8.383619 GTCTGTATAGCATTGTAGTTTTGTGAG 58.616 37.037 0.00 0.00 0.00 3.51
861 895 7.786030 TGCTTATCATCTTATAGAGGGCATAC 58.214 38.462 0.00 0.00 0.00 2.39
873 907 3.887716 AGAGGGCATACTGATTCAATTGC 59.112 43.478 0.00 6.59 0.00 3.56
1022 1056 2.671619 TCCCCCGCTTTGCTTTCG 60.672 61.111 0.00 0.00 0.00 3.46
1039 1073 4.043200 GGCAGGAGCAACGCCAAC 62.043 66.667 0.00 0.00 45.52 3.77
1040 1074 4.389576 GCAGGAGCAACGCCAACG 62.390 66.667 0.00 0.00 42.87 4.10
1041 1075 4.389576 CAGGAGCAACGCCAACGC 62.390 66.667 0.00 0.00 45.53 4.84
1100 1135 0.105142 ACGCCCCCACATATACTCCT 60.105 55.000 0.00 0.00 0.00 3.69
1158 1193 1.534595 CTTTCTTCTCACCACAGCAGC 59.465 52.381 0.00 0.00 0.00 5.25
1169 1204 1.898574 ACAGCAGCAAGGAAACCCG 60.899 57.895 0.00 0.00 0.00 5.28
1174 1209 2.600470 GCAAGGAAACCCGCCCTT 60.600 61.111 0.00 0.00 43.12 3.95
1176 1211 1.977009 CAAGGAAACCCGCCCTTCC 60.977 63.158 0.00 0.00 40.57 3.46
1213 1248 1.561769 ATCAATGGGTCAGGCCGTCA 61.562 55.000 0.00 0.00 38.44 4.35
1256 1291 3.268330 TCATCGACGAACACTAGCTACT 58.732 45.455 0.00 0.00 0.00 2.57
1319 1358 4.229876 GCTGGTTTTGCTTCTAACATGAC 58.770 43.478 0.00 0.00 0.00 3.06
1415 1454 1.077930 GCCAAGGAGCAGCTCATCA 60.078 57.895 24.09 0.00 31.08 3.07
1426 1465 5.506982 GGAGCAGCTCATCAAATTTATGGAC 60.507 44.000 24.09 0.00 31.08 4.02
1429 1468 5.517770 GCAGCTCATCAAATTTATGGACAAC 59.482 40.000 0.00 0.00 0.00 3.32
1435 1474 9.559958 CTCATCAAATTTATGGACAACAACTAC 57.440 33.333 0.00 0.00 0.00 2.73
1436 1475 8.233868 TCATCAAATTTATGGACAACAACTACG 58.766 33.333 0.00 0.00 0.00 3.51
1437 1476 7.731882 TCAAATTTATGGACAACAACTACGA 57.268 32.000 0.00 0.00 0.00 3.43
1441 1480 2.867287 TGGACAACAACTACGACGAA 57.133 45.000 0.00 0.00 0.00 3.85
1444 1483 3.552699 TGGACAACAACTACGACGAAAAG 59.447 43.478 0.00 0.00 0.00 2.27
1466 1505 0.752054 CAAGCCTGCCAAAACCTTCA 59.248 50.000 0.00 0.00 0.00 3.02
1492 1531 2.004583 TTTACCACGCCATCTTCGAG 57.995 50.000 0.00 0.00 0.00 4.04
1498 1537 0.176680 ACGCCATCTTCGAGCTCATT 59.823 50.000 15.40 0.00 0.00 2.57
1510 1549 3.055819 TCGAGCTCATTGAGTAAGCCTTT 60.056 43.478 15.40 0.00 36.69 3.11
1522 1561 4.574892 AGTAAGCCTTTCTTCTCAAGAGC 58.425 43.478 0.00 0.00 39.03 4.09
1603 1645 7.857404 ACAGCCTACAGATTGGTAGTATTAT 57.143 36.000 0.00 0.00 39.26 1.28
1639 1681 1.316651 GATGCCTGCAGGAATTCTCC 58.683 55.000 37.21 15.68 42.81 3.71
1682 1724 3.243643 GGATTAAAAGTTCATGCATGCGC 59.756 43.478 22.25 15.78 39.24 6.09
1710 1752 3.446516 CAGGTACTACTCCCTTGGTACAC 59.553 52.174 0.00 0.00 34.10 2.90
1711 1753 3.076484 AGGTACTACTCCCTTGGTACACA 59.924 47.826 0.00 0.00 34.10 3.72
1712 1754 3.194329 GGTACTACTCCCTTGGTACACAC 59.806 52.174 0.00 0.00 39.29 3.82
1713 1755 2.966915 ACTACTCCCTTGGTACACACA 58.033 47.619 0.00 0.00 39.29 3.72
1714 1756 2.897969 ACTACTCCCTTGGTACACACAG 59.102 50.000 0.00 0.00 39.29 3.66
1716 1758 2.404559 ACTCCCTTGGTACACACAGAA 58.595 47.619 0.00 0.00 39.29 3.02
1718 1760 3.201266 ACTCCCTTGGTACACACAGAAAA 59.799 43.478 0.00 0.00 39.29 2.29
1731 1782 3.188873 ACACAGAAAAACGACGTTTTGGA 59.811 39.130 32.55 0.00 43.67 3.53
1735 1786 4.204168 CAGAAAAACGACGTTTTGGACATG 59.796 41.667 32.55 22.71 43.67 3.21
1743 1794 4.464112 GACGTTTTGGACATGTCTTAAGC 58.536 43.478 24.50 17.82 0.00 3.09
1766 1817 5.620098 CAAACATTGGAAACTTTGACGAC 57.380 39.130 0.00 0.00 31.61 4.34
1767 1818 5.339990 CAAACATTGGAAACTTTGACGACT 58.660 37.500 0.00 0.00 31.61 4.18
1768 1819 4.552166 ACATTGGAAACTTTGACGACTG 57.448 40.909 0.00 0.00 0.00 3.51
1769 1820 4.196193 ACATTGGAAACTTTGACGACTGA 58.804 39.130 0.00 0.00 0.00 3.41
1770 1821 4.821805 ACATTGGAAACTTTGACGACTGAT 59.178 37.500 0.00 0.00 0.00 2.90
1771 1822 5.995282 ACATTGGAAACTTTGACGACTGATA 59.005 36.000 0.00 0.00 0.00 2.15
1772 1823 6.655003 ACATTGGAAACTTTGACGACTGATAT 59.345 34.615 0.00 0.00 0.00 1.63
1773 1824 7.174946 ACATTGGAAACTTTGACGACTGATATT 59.825 33.333 0.00 0.00 0.00 1.28
1774 1825 6.480524 TGGAAACTTTGACGACTGATATTG 57.519 37.500 0.00 0.00 0.00 1.90
1775 1826 6.227522 TGGAAACTTTGACGACTGATATTGA 58.772 36.000 0.00 0.00 0.00 2.57
1776 1827 6.147164 TGGAAACTTTGACGACTGATATTGAC 59.853 38.462 0.00 0.00 0.00 3.18
1777 1828 6.369065 GGAAACTTTGACGACTGATATTGACT 59.631 38.462 0.00 0.00 0.00 3.41
1778 1829 6.952935 AACTTTGACGACTGATATTGACTC 57.047 37.500 0.00 0.00 0.00 3.36
1779 1830 5.411781 ACTTTGACGACTGATATTGACTCC 58.588 41.667 0.00 0.00 0.00 3.85
1810 1861 3.367395 GCTTGGGAACTTGAAAGCCATAC 60.367 47.826 0.00 0.00 39.26 2.39
1814 1865 3.621715 GGGAACTTGAAAGCCATACGTAG 59.378 47.826 0.08 0.00 0.00 3.51
1815 1866 3.063588 GGAACTTGAAAGCCATACGTAGC 59.936 47.826 0.08 0.00 0.00 3.58
1816 1867 3.328382 ACTTGAAAGCCATACGTAGCA 57.672 42.857 9.22 0.00 0.00 3.49
1817 1868 3.262420 ACTTGAAAGCCATACGTAGCAG 58.738 45.455 9.22 0.79 0.00 4.24
1819 1870 4.081862 ACTTGAAAGCCATACGTAGCAGTA 60.082 41.667 9.22 0.00 0.00 2.74
1820 1871 4.665833 TGAAAGCCATACGTAGCAGTAT 57.334 40.909 9.22 0.00 37.78 2.12
1821 1872 5.777850 TGAAAGCCATACGTAGCAGTATA 57.222 39.130 9.22 0.00 35.72 1.47
1822 1873 5.769367 TGAAAGCCATACGTAGCAGTATAG 58.231 41.667 9.22 0.00 35.72 1.31
1823 1874 5.533528 TGAAAGCCATACGTAGCAGTATAGA 59.466 40.000 9.22 0.00 35.72 1.98
1829 1880 8.407064 AGCCATACGTAGCAGTATAGATTTATC 58.593 37.037 9.22 0.00 35.72 1.75
1839 1890 9.727859 AGCAGTATAGATTTATCTCGAGAAGTA 57.272 33.333 20.91 5.34 38.32 2.24
1901 1955 4.841443 TTGCAGTAGAAACTAGTCGTCA 57.159 40.909 0.00 0.00 33.48 4.35
1942 1996 0.596341 GCGCCAATGTCCAAAACGTT 60.596 50.000 0.00 0.00 37.60 3.99
1946 2000 1.833860 CAATGTCCAAAACGTTGCGT 58.166 45.000 0.00 0.00 45.32 5.24
1974 2028 1.569653 ACCCAAGGGAGTAGTGTAGC 58.430 55.000 13.15 0.00 38.96 3.58
1975 2029 1.078989 ACCCAAGGGAGTAGTGTAGCT 59.921 52.381 13.15 0.00 38.96 3.32
1976 2030 2.188817 CCCAAGGGAGTAGTGTAGCTT 58.811 52.381 0.00 0.00 37.50 3.74
1978 2032 3.369576 CCCAAGGGAGTAGTGTAGCTTTC 60.370 52.174 0.00 0.00 37.50 2.62
1979 2033 3.512680 CAAGGGAGTAGTGTAGCTTTCG 58.487 50.000 0.00 0.00 0.00 3.46
1980 2034 2.100989 AGGGAGTAGTGTAGCTTTCGG 58.899 52.381 0.00 0.00 0.00 4.30
1981 2035 1.823610 GGGAGTAGTGTAGCTTTCGGT 59.176 52.381 0.00 0.00 0.00 4.69
1982 2036 2.159268 GGGAGTAGTGTAGCTTTCGGTC 60.159 54.545 0.00 0.00 0.00 4.79
1983 2037 2.490903 GGAGTAGTGTAGCTTTCGGTCA 59.509 50.000 0.00 0.00 0.00 4.02
1984 2038 3.427773 GGAGTAGTGTAGCTTTCGGTCAG 60.428 52.174 0.00 0.00 0.00 3.51
1985 2039 3.418995 AGTAGTGTAGCTTTCGGTCAGA 58.581 45.455 0.00 0.00 0.00 3.27
2006 2111 3.574284 TTCAATGCCGAAATGTTCCTG 57.426 42.857 0.00 0.00 0.00 3.86
2011 2116 0.657840 GCCGAAATGTTCCTGATCCG 59.342 55.000 0.00 0.00 0.00 4.18
2026 2131 3.942829 TGATCCGTTCAGAAGCTCAAAT 58.057 40.909 0.00 0.00 0.00 2.32
2114 2236 8.830580 CATTCTACTTCAGAAAGTTTTGTGAGA 58.169 33.333 4.88 0.00 46.29 3.27
2144 2266 3.556817 CTGCAGTACAGGATGCCAA 57.443 52.632 5.25 0.00 43.19 4.52
2146 2268 0.322456 TGCAGTACAGGATGCCAACC 60.322 55.000 0.00 0.00 42.53 3.77
2153 2275 2.173519 ACAGGATGCCAACCAAAGATG 58.826 47.619 0.00 0.00 42.53 2.90
2160 2282 2.151202 GCCAACCAAAGATGAACTCGA 58.849 47.619 0.00 0.00 0.00 4.04
2162 2284 3.664107 CCAACCAAAGATGAACTCGAGA 58.336 45.455 21.68 0.00 0.00 4.04
2166 2288 5.215252 ACCAAAGATGAACTCGAGAAAGA 57.785 39.130 21.68 0.00 0.00 2.52
2178 2300 4.156664 TCGAGAAAGAGTACAAGGTTCG 57.843 45.455 0.00 0.00 0.00 3.95
2181 2305 4.236147 GAGAAAGAGTACAAGGTTCGGAC 58.764 47.826 0.00 0.00 0.00 4.79
2183 2307 3.382048 AAGAGTACAAGGTTCGGACAC 57.618 47.619 0.00 0.00 0.00 3.67
2189 2313 0.179029 CAAGGTTCGGACACACCCTT 60.179 55.000 0.00 0.00 35.95 3.95
2192 2316 0.666374 GGTTCGGACACACCCTTTTG 59.334 55.000 0.00 0.00 34.64 2.44
2197 2321 3.618351 TCGGACACACCCTTTTGTTTTA 58.382 40.909 0.00 0.00 34.64 1.52
2198 2322 3.628487 TCGGACACACCCTTTTGTTTTAG 59.372 43.478 0.00 0.00 34.64 1.85
2200 2324 4.096682 CGGACACACCCTTTTGTTTTAGAA 59.903 41.667 0.00 0.00 34.64 2.10
2201 2325 5.221165 CGGACACACCCTTTTGTTTTAGAAT 60.221 40.000 0.00 0.00 34.64 2.40
2202 2326 6.016943 CGGACACACCCTTTTGTTTTAGAATA 60.017 38.462 0.00 0.00 34.64 1.75
2203 2327 7.468906 CGGACACACCCTTTTGTTTTAGAATAA 60.469 37.037 0.00 0.00 34.64 1.40
2204 2328 8.364894 GGACACACCCTTTTGTTTTAGAATAAT 58.635 33.333 0.00 0.00 0.00 1.28
2238 2362 3.696548 GGAGGTTCCTCTGCTTTATTTGG 59.303 47.826 16.95 0.00 32.53 3.28
2282 2406 9.313118 GCTTAGAATCTTTCTTTGGTTTCAAAA 57.687 29.630 0.00 0.00 41.70 2.44
2322 2447 7.951530 AAAGAAAACATTTGGATGTCATCAC 57.048 32.000 14.72 4.98 45.58 3.06
2325 2450 7.499292 AGAAAACATTTGGATGTCATCACAAA 58.501 30.769 21.54 21.54 45.58 2.83
2326 2451 7.986320 AGAAAACATTTGGATGTCATCACAAAA 59.014 29.630 22.41 16.19 45.58 2.44
2328 2453 9.775854 AAAACATTTGGATGTCATCACAAAATA 57.224 25.926 22.41 9.66 45.58 1.40
2329 2454 9.947433 AAACATTTGGATGTCATCACAAAATAT 57.053 25.926 22.41 10.86 45.58 1.28
2331 2456 9.373603 ACATTTGGATGTCATCACAAAATATTG 57.626 29.630 22.41 19.23 42.83 1.90
2333 2458 6.527057 TGGATGTCATCACAAAATATTGCA 57.473 33.333 14.72 0.00 40.34 4.08
2337 2462 8.385111 GGATGTCATCACAAAATATTGCAAAAG 58.615 33.333 14.72 0.00 40.34 2.27
2338 2463 9.142515 GATGTCATCACAAAATATTGCAAAAGA 57.857 29.630 1.71 0.00 40.34 2.52
2341 2466 9.801714 GTCATCACAAAATATTGCAAAAGAAAG 57.198 29.630 1.71 0.00 40.34 2.62
2342 2467 9.545105 TCATCACAAAATATTGCAAAAGAAAGT 57.455 25.926 1.71 0.00 40.34 2.66
2350 2475 8.831715 AATATTGCAAAAGAAAGTAAACCAGG 57.168 30.769 1.71 0.00 0.00 4.45
2353 2478 6.385649 TGCAAAAGAAAGTAAACCAGGTAG 57.614 37.500 0.00 0.00 0.00 3.18
2356 2481 4.652679 AAGAAAGTAAACCAGGTAGGGG 57.347 45.455 0.00 0.00 43.89 4.79
2358 2483 4.766768 AGAAAGTAAACCAGGTAGGGGTA 58.233 43.478 0.00 0.00 43.89 3.69
2359 2484 5.356575 AGAAAGTAAACCAGGTAGGGGTAT 58.643 41.667 0.00 0.00 43.89 2.73
2360 2485 5.794289 AGAAAGTAAACCAGGTAGGGGTATT 59.206 40.000 0.00 0.00 43.89 1.89
2362 2487 7.462006 AGAAAGTAAACCAGGTAGGGGTATTAA 59.538 37.037 0.00 0.00 43.89 1.40
2363 2488 7.776291 AAGTAAACCAGGTAGGGGTATTAAT 57.224 36.000 0.00 0.00 43.89 1.40
2394 2528 0.177604 CCCTCTAGTGCAGGCTCTTG 59.822 60.000 0.82 0.14 0.00 3.02
2397 2531 1.222936 CTAGTGCAGGCTCTTGGGG 59.777 63.158 0.82 0.00 0.00 4.96
2398 2532 2.262774 CTAGTGCAGGCTCTTGGGGG 62.263 65.000 0.82 0.00 0.00 5.40
2399 2533 2.763988 TAGTGCAGGCTCTTGGGGGA 62.764 60.000 0.82 0.00 0.00 4.81
2403 2537 2.078452 CAGGCTCTTGGGGGAAAGA 58.922 57.895 0.00 0.00 34.97 2.52
2408 2542 0.621082 CTCTTGGGGGAAAGAGGGAC 59.379 60.000 6.13 0.00 46.30 4.46
2428 2562 4.345859 ACGGAGTAAACATCACAAAGGA 57.654 40.909 0.00 0.00 41.94 3.36
2429 2563 4.315803 ACGGAGTAAACATCACAAAGGAG 58.684 43.478 0.00 0.00 41.94 3.69
2466 2600 1.954528 GAGAACCTCGTCACGGTGA 59.045 57.895 6.76 6.76 34.33 4.02
2646 2780 1.334869 CCAAGACCAACAAGCTGTGAC 59.665 52.381 0.00 0.00 0.00 3.67
2669 2803 3.924686 CCGGCGGATTATATACAAGTGTC 59.075 47.826 24.41 0.00 0.00 3.67
2673 2810 5.405571 GGCGGATTATATACAAGTGTCACTG 59.594 44.000 6.18 3.71 0.00 3.66
2679 2816 9.186323 GATTATATACAAGTGTCACTGCTACTG 57.814 37.037 6.18 3.11 0.00 2.74
2692 2829 1.134367 TGCTACTGCTAGCTTACCACG 59.866 52.381 17.23 0.00 45.20 4.94
2877 3033 1.269569 CCCTTCAAACCAGAAAACGGC 60.270 52.381 0.00 0.00 0.00 5.68
2904 3060 5.239087 TGTTGAACCTAACGTTGGGAATTAC 59.761 40.000 34.25 23.94 33.74 1.89
2906 3062 6.357579 TGAACCTAACGTTGGGAATTACTA 57.642 37.500 34.25 11.85 33.74 1.82
2907 3063 6.767456 TGAACCTAACGTTGGGAATTACTAA 58.233 36.000 34.25 9.87 33.74 2.24
2915 3071 5.237779 ACGTTGGGAATTACTAACACACAAG 59.762 40.000 16.26 2.35 0.00 3.16
2919 3075 7.972832 TGGGAATTACTAACACACAAGTAAG 57.027 36.000 0.00 0.00 40.49 2.34
2921 3077 6.938596 GGGAATTACTAACACACAAGTAAGGT 59.061 38.462 0.00 0.00 40.49 3.50
2935 3093 6.204688 CACAAGTAAGGTATCTGAAAACTGCA 59.795 38.462 0.00 0.00 0.00 4.41
2942 3100 5.003804 GGTATCTGAAAACTGCAGAGGAAA 58.996 41.667 23.35 1.71 44.75 3.13
3002 3160 6.872628 ACATATGCATCAACTTGTATGGAG 57.127 37.500 0.19 0.00 0.00 3.86
3003 3161 6.359804 ACATATGCATCAACTTGTATGGAGT 58.640 36.000 0.19 0.00 0.00 3.85
3022 3180 7.647907 TGGAGTAAGTTTGATTAGTCGAAAC 57.352 36.000 0.00 0.00 36.40 2.78
3040 3198 7.115947 AGTCGAAACTTAGGACGAAACTTAATG 59.884 37.037 0.00 0.00 36.57 1.90
3041 3199 6.013689 CGAAACTTAGGACGAAACTTAATGC 58.986 40.000 0.00 0.00 0.00 3.56
3046 3204 7.582352 ACTTAGGACGAAACTTAATGCTTTTC 58.418 34.615 0.00 0.00 0.00 2.29
3047 3205 7.444487 ACTTAGGACGAAACTTAATGCTTTTCT 59.556 33.333 0.00 0.00 0.00 2.52
3048 3206 6.635030 AGGACGAAACTTAATGCTTTTCTT 57.365 33.333 0.00 0.00 0.00 2.52
3049 3207 7.739498 AGGACGAAACTTAATGCTTTTCTTA 57.261 32.000 0.00 0.00 0.00 2.10
3050 3208 8.161699 AGGACGAAACTTAATGCTTTTCTTAA 57.838 30.769 0.00 0.00 0.00 1.85
3054 3212 9.447040 ACGAAACTTAATGCTTTTCTTAACTTC 57.553 29.630 0.00 0.00 0.00 3.01
3144 3484 2.095768 ACATCAGCCGAAAATCAACACG 60.096 45.455 0.00 0.00 0.00 4.49
3177 4031 4.038402 CAGGATTATCATGTGAAAAGCCCC 59.962 45.833 0.00 0.00 0.00 5.80
3178 4032 3.321968 GGATTATCATGTGAAAAGCCCCC 59.678 47.826 0.00 0.00 0.00 5.40
3207 4061 2.950975 GGGTAAAAACCACGGACTGAAA 59.049 45.455 0.00 0.00 0.00 2.69
3226 4080 8.421249 ACTGAAACCATCAAAATATTCTTCCA 57.579 30.769 0.00 0.00 37.67 3.53
3246 4100 9.939802 TCTTCCACTATCATCAAATATGAGATG 57.060 33.333 10.08 10.08 42.25 2.90
3247 4101 8.557592 TTCCACTATCATCAAATATGAGATGC 57.442 34.615 11.08 0.00 41.02 3.91
3248 4102 7.682628 TCCACTATCATCAAATATGAGATGCA 58.317 34.615 11.08 0.00 41.02 3.96
3249 4103 8.158789 TCCACTATCATCAAATATGAGATGCAA 58.841 33.333 11.08 3.62 41.02 4.08
3250 4104 8.235226 CCACTATCATCAAATATGAGATGCAAC 58.765 37.037 11.08 0.00 41.02 4.17
3251 4105 8.780249 CACTATCATCAAATATGAGATGCAACA 58.220 33.333 11.08 0.00 41.02 3.33
3252 4106 9.516546 ACTATCATCAAATATGAGATGCAACAT 57.483 29.630 11.08 0.00 41.02 2.71
3256 4110 9.524106 TCATCAAATATGAGATGCAACATTTTC 57.476 29.630 11.08 0.00 41.02 2.29
3257 4111 9.529325 CATCAAATATGAGATGCAACATTTTCT 57.471 29.630 9.08 0.00 39.39 2.52
3258 4112 9.745880 ATCAAATATGAGATGCAACATTTTCTC 57.254 29.630 5.91 5.91 39.39 2.87
3259 4113 8.741841 TCAAATATGAGATGCAACATTTTCTCA 58.258 29.630 15.71 15.71 46.13 3.27
3260 4114 9.361315 CAAATATGAGATGCAACATTTTCTCAA 57.639 29.630 16.95 8.90 45.45 3.02
3261 4115 9.932207 AAATATGAGATGCAACATTTTCTCAAA 57.068 25.926 16.95 0.00 45.45 2.69
3262 4116 9.932207 AATATGAGATGCAACATTTTCTCAAAA 57.068 25.926 16.95 10.27 45.45 2.44
3263 4117 9.932207 ATATGAGATGCAACATTTTCTCAAAAA 57.068 25.926 16.95 8.29 45.45 1.94
3353 4207 3.535561 ACTCTAATCCCGAGCACAAATG 58.464 45.455 0.00 0.00 31.71 2.32
3376 4230 5.359576 TGCACCCGCTTGAATAATAAATTCT 59.640 36.000 0.00 0.00 39.64 2.40
3387 4241 7.231467 TGAATAATAAATTCTGAGGGTAGGGC 58.769 38.462 0.02 0.00 0.00 5.19
3398 4252 1.765074 GGTAGGGCTTGGGTGTGAA 59.235 57.895 0.00 0.00 0.00 3.18
3404 4258 2.110011 AGGGCTTGGGTGTGAATTTACT 59.890 45.455 1.75 0.00 0.00 2.24
3417 4271 7.173390 GGTGTGAATTTACTAGCTCTTCAAAGT 59.827 37.037 1.75 0.00 0.00 2.66
3418 4272 9.204570 GTGTGAATTTACTAGCTCTTCAAAGTA 57.795 33.333 1.75 0.00 0.00 2.24
3440 4294 4.371624 AACCACTCCAAATCACAGATCA 57.628 40.909 0.00 0.00 0.00 2.92
3516 4370 7.437748 AGAAGGATCTGTATGAATCTAAACCG 58.562 38.462 0.00 0.00 33.59 4.44
3538 4392 4.151883 GGTGTGTATGCATAATTGGGGAT 58.848 43.478 8.28 0.00 0.00 3.85
3539 4393 4.588528 GGTGTGTATGCATAATTGGGGATT 59.411 41.667 8.28 0.00 0.00 3.01
3542 4396 7.039082 GGTGTGTATGCATAATTGGGGATTAAT 60.039 37.037 8.28 0.00 34.06 1.40
3560 4414 6.817140 GGATTAATTAGGTATAAGGCCGACAG 59.183 42.308 0.00 0.00 0.00 3.51
3561 4415 6.736110 TTAATTAGGTATAAGGCCGACAGT 57.264 37.500 0.00 0.00 0.00 3.55
3575 4430 1.734465 CGACAGTGGAGCCATTTCTTC 59.266 52.381 0.00 0.00 0.00 2.87
3579 4434 2.746362 CAGTGGAGCCATTTCTTCTGTC 59.254 50.000 0.00 0.00 0.00 3.51
3589 4444 5.240403 GCCATTTCTTCTGTCTTCTCTTGTT 59.760 40.000 0.00 0.00 0.00 2.83
3642 4497 3.260297 TGGCCAGCCCAGAAGAAA 58.740 55.556 0.00 0.00 39.18 2.52
3643 4498 1.776301 TGGCCAGCCCAGAAGAAAT 59.224 52.632 0.00 0.00 39.18 2.17
3644 4499 0.998928 TGGCCAGCCCAGAAGAAATA 59.001 50.000 0.00 0.00 39.18 1.40
3645 4500 1.357420 TGGCCAGCCCAGAAGAAATAA 59.643 47.619 0.00 0.00 39.18 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 6.983890 TGAGAAAACAGAATAAAACCCTTTGC 59.016 34.615 0.00 0.00 0.00 3.68
192 193 2.225117 CCCTTTGTCTCCTTGACCCATT 60.225 50.000 0.00 0.00 44.75 3.16
304 305 3.106407 GGTGACTCGTCGCTGTGC 61.106 66.667 10.09 0.00 39.85 4.57
308 309 1.007271 CAAGTGGTGACTCGTCGCT 60.007 57.895 10.09 0.00 39.85 4.93
310 311 4.245054 CCAAGTGGTGACTCGTCG 57.755 61.111 0.00 0.00 0.00 5.12
361 374 3.256383 AGCTACAAAATTGTGATGCTGCA 59.744 39.130 15.52 4.13 42.31 4.41
373 389 2.162681 GGCAGACACCAGCTACAAAAT 58.837 47.619 0.00 0.00 0.00 1.82
380 396 2.113986 GTTGGGCAGACACCAGCT 59.886 61.111 0.00 0.00 39.57 4.24
382 398 1.601759 CTGGTTGGGCAGACACCAG 60.602 63.158 8.66 8.66 41.42 4.00
408 424 4.114058 CATGTGGTGGATGGAAAATCAC 57.886 45.455 0.00 0.00 0.00 3.06
448 464 1.026182 GCATGCGGATCCAGTGTTCA 61.026 55.000 13.41 0.00 0.00 3.18
455 471 0.462581 GTCTTCTGCATGCGGATCCA 60.463 55.000 29.15 14.22 0.00 3.41
456 472 0.179062 AGTCTTCTGCATGCGGATCC 60.179 55.000 29.15 18.76 0.00 3.36
480 502 1.134280 CCTGAGGGCCTTGATGTACAG 60.134 57.143 7.89 8.42 0.00 2.74
501 523 3.269178 GACTGCATGAGAAAGCTTAGCT 58.731 45.455 0.00 0.00 42.56 3.32
506 528 2.239150 AGATGGACTGCATGAGAAAGCT 59.761 45.455 0.00 0.00 0.00 3.74
522 544 4.141824 GGAGGGAGTACTTCAGAAAGATGG 60.142 50.000 2.92 0.00 36.30 3.51
539 561 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
540 562 2.026636 TCACTTATTTTGGGACGGAGGG 60.027 50.000 0.00 0.00 0.00 4.30
542 564 3.933332 GAGTCACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 33.84 4.63
543 565 3.325425 TGAGTCACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 33.84 4.69
544 566 3.670625 TGAGTCACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 33.84 4.79
545 567 4.755123 AGTTGAGTCACTTATTTTGGGACG 59.245 41.667 0.00 0.00 33.84 4.79
546 568 6.635030 AAGTTGAGTCACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
547 569 7.776030 TGTAAAGTTGAGTCACTTATTTTGGGA 59.224 33.333 0.00 0.00 35.87 4.37
548 570 7.860872 GTGTAAAGTTGAGTCACTTATTTTGGG 59.139 37.037 0.00 0.00 35.87 4.12
549 571 8.621286 AGTGTAAAGTTGAGTCACTTATTTTGG 58.379 33.333 0.00 0.00 35.87 3.28
555 577 9.880157 AAAGTTAGTGTAAAGTTGAGTCACTTA 57.120 29.630 0.00 0.00 39.54 2.24
556 578 8.665685 CAAAGTTAGTGTAAAGTTGAGTCACTT 58.334 33.333 0.00 0.00 39.54 3.16
557 579 7.822822 ACAAAGTTAGTGTAAAGTTGAGTCACT 59.177 33.333 0.00 0.00 41.32 3.41
558 580 7.971455 ACAAAGTTAGTGTAAAGTTGAGTCAC 58.029 34.615 0.00 0.00 0.00 3.67
559 581 9.090692 GTACAAAGTTAGTGTAAAGTTGAGTCA 57.909 33.333 0.00 0.00 33.40 3.41
560 582 9.310716 AGTACAAAGTTAGTGTAAAGTTGAGTC 57.689 33.333 0.00 0.00 33.40 3.36
594 616 9.673454 CCCAAAATAAGTGACTTAACTTTGTAC 57.327 33.333 25.39 0.00 40.77 2.90
595 617 9.629878 TCCCAAAATAAGTGACTTAACTTTGTA 57.370 29.630 25.39 17.43 40.77 2.41
596 618 8.410912 GTCCCAAAATAAGTGACTTAACTTTGT 58.589 33.333 25.39 7.77 40.77 2.83
597 619 7.589954 CGTCCCAAAATAAGTGACTTAACTTTG 59.410 37.037 23.09 23.09 40.77 2.77
598 620 7.255346 CCGTCCCAAAATAAGTGACTTAACTTT 60.255 37.037 9.35 9.10 40.77 2.66
599 621 6.206048 CCGTCCCAAAATAAGTGACTTAACTT 59.794 38.462 9.35 3.45 42.89 2.66
600 622 5.704053 CCGTCCCAAAATAAGTGACTTAACT 59.296 40.000 9.35 0.00 29.35 2.24
601 623 5.702209 TCCGTCCCAAAATAAGTGACTTAAC 59.298 40.000 9.35 0.45 29.35 2.01
602 624 5.867330 TCCGTCCCAAAATAAGTGACTTAA 58.133 37.500 9.35 0.00 29.35 1.85
603 625 5.484715 CTCCGTCCCAAAATAAGTGACTTA 58.515 41.667 7.60 7.60 0.00 2.24
604 626 4.324267 CTCCGTCCCAAAATAAGTGACTT 58.676 43.478 2.37 2.37 0.00 3.01
605 627 3.307480 CCTCCGTCCCAAAATAAGTGACT 60.307 47.826 0.00 0.00 0.00 3.41
606 628 3.007635 CCTCCGTCCCAAAATAAGTGAC 58.992 50.000 0.00 0.00 0.00 3.67
607 629 2.026636 CCCTCCGTCCCAAAATAAGTGA 60.027 50.000 0.00 0.00 0.00 3.41
608 630 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
609 631 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
610 632 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
611 633 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
612 634 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
613 635 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
614 636 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
615 637 0.178926 TGTACTCCCTCCGTCCCAAA 60.179 55.000 0.00 0.00 0.00 3.28
616 638 0.042131 ATGTACTCCCTCCGTCCCAA 59.958 55.000 0.00 0.00 0.00 4.12
617 639 0.042131 AATGTACTCCCTCCGTCCCA 59.958 55.000 0.00 0.00 0.00 4.37
618 640 1.201424 AAATGTACTCCCTCCGTCCC 58.799 55.000 0.00 0.00 0.00 4.46
619 641 3.007635 CAAAAATGTACTCCCTCCGTCC 58.992 50.000 0.00 0.00 0.00 4.79
620 642 3.671716 ACAAAAATGTACTCCCTCCGTC 58.328 45.455 0.00 0.00 0.00 4.79
621 643 3.782656 ACAAAAATGTACTCCCTCCGT 57.217 42.857 0.00 0.00 0.00 4.69
622 644 6.404293 CCAATTACAAAAATGTACTCCCTCCG 60.404 42.308 0.00 0.00 0.00 4.63
623 645 6.661805 TCCAATTACAAAAATGTACTCCCTCC 59.338 38.462 0.00 0.00 0.00 4.30
624 646 7.696992 TCCAATTACAAAAATGTACTCCCTC 57.303 36.000 0.00 0.00 0.00 4.30
625 647 7.728532 ACTTCCAATTACAAAAATGTACTCCCT 59.271 33.333 0.00 0.00 0.00 4.20
626 648 7.812669 CACTTCCAATTACAAAAATGTACTCCC 59.187 37.037 0.00 0.00 0.00 4.30
627 649 7.812669 CCACTTCCAATTACAAAAATGTACTCC 59.187 37.037 0.00 0.00 0.00 3.85
628 650 7.328493 GCCACTTCCAATTACAAAAATGTACTC 59.672 37.037 0.00 0.00 0.00 2.59
629 651 7.015195 AGCCACTTCCAATTACAAAAATGTACT 59.985 33.333 0.00 0.00 0.00 2.73
630 652 7.116233 CAGCCACTTCCAATTACAAAAATGTAC 59.884 37.037 0.00 0.00 0.00 2.90
631 653 7.151308 CAGCCACTTCCAATTACAAAAATGTA 58.849 34.615 0.00 0.00 0.00 2.29
632 654 5.990996 CAGCCACTTCCAATTACAAAAATGT 59.009 36.000 0.00 0.00 0.00 2.71
633 655 5.409214 CCAGCCACTTCCAATTACAAAAATG 59.591 40.000 0.00 0.00 0.00 2.32
634 656 5.071653 ACCAGCCACTTCCAATTACAAAAAT 59.928 36.000 0.00 0.00 0.00 1.82
635 657 4.407296 ACCAGCCACTTCCAATTACAAAAA 59.593 37.500 0.00 0.00 0.00 1.94
636 658 3.964031 ACCAGCCACTTCCAATTACAAAA 59.036 39.130 0.00 0.00 0.00 2.44
644 666 1.371183 CTCGACCAGCCACTTCCAA 59.629 57.895 0.00 0.00 0.00 3.53
650 672 2.574399 GTCTCCTCGACCAGCCAC 59.426 66.667 0.00 0.00 36.62 5.01
668 690 4.679373 TTCATGCCCTGAGATCTTACTC 57.321 45.455 0.00 0.00 34.68 2.59
679 701 5.105228 ACAAAACCTATTCATTCATGCCCTG 60.105 40.000 0.00 0.00 0.00 4.45
681 703 5.111293 CACAAAACCTATTCATTCATGCCC 58.889 41.667 0.00 0.00 0.00 5.36
707 729 2.730382 TGGACTTGGACGCTACTCATA 58.270 47.619 0.00 0.00 0.00 2.15
715 737 4.900635 ATTAATCAATGGACTTGGACGC 57.099 40.909 0.00 0.00 35.43 5.19
852 886 3.304257 CGCAATTGAATCAGTATGCCCTC 60.304 47.826 10.34 0.00 34.76 4.30
861 895 1.791555 GCACGGTCGCAATTGAATCAG 60.792 52.381 10.34 1.58 0.00 2.90
873 907 1.434555 TATGGAAACTTGCACGGTCG 58.565 50.000 0.00 0.00 0.00 4.79
931 965 7.469537 ACGCTAGCTTAGGATTCTGTTATAT 57.530 36.000 13.93 0.00 0.00 0.86
932 966 6.348295 CGACGCTAGCTTAGGATTCTGTTATA 60.348 42.308 13.93 0.00 0.00 0.98
933 967 5.563085 CGACGCTAGCTTAGGATTCTGTTAT 60.563 44.000 13.93 0.00 0.00 1.89
934 968 4.261072 CGACGCTAGCTTAGGATTCTGTTA 60.261 45.833 13.93 0.00 0.00 2.41
1041 1075 3.365265 GTGAGGCCAAGGCAACGG 61.365 66.667 13.87 0.00 44.11 4.44
1042 1076 2.594303 TGTGAGGCCAAGGCAACG 60.594 61.111 13.87 0.00 44.11 4.10
1158 1193 1.977009 GGAAGGGCGGGTTTCCTTG 60.977 63.158 0.00 0.00 42.85 3.61
1174 1209 0.321564 CTGATCTTTGTGGGCGTGGA 60.322 55.000 0.00 0.00 0.00 4.02
1176 1211 1.667724 GATCTGATCTTTGTGGGCGTG 59.332 52.381 10.37 0.00 0.00 5.34
1180 1215 3.635373 CCCATTGATCTGATCTTTGTGGG 59.365 47.826 22.92 22.92 37.96 4.61
1182 1217 4.945543 TGACCCATTGATCTGATCTTTGTG 59.054 41.667 17.82 9.45 0.00 3.33
1213 1248 0.328258 ATACCTTGCTTCGCCTTGGT 59.672 50.000 0.00 0.00 0.00 3.67
1319 1358 2.739932 CGGCCTCTACCAGAAACATCAG 60.740 54.545 0.00 0.00 0.00 2.90
1348 1387 0.784778 CCTTGTCGTTCTTCTGCGTC 59.215 55.000 0.00 0.00 0.00 5.19
1415 1454 6.424509 TCGTCGTAGTTGTTGTCCATAAATTT 59.575 34.615 0.00 0.00 0.00 1.82
1426 1465 3.552699 TGACCTTTTCGTCGTAGTTGTTG 59.447 43.478 0.00 0.00 35.40 3.33
1429 1468 3.362693 GCTTGACCTTTTCGTCGTAGTTG 60.363 47.826 0.00 0.00 35.40 3.16
1444 1483 1.115326 AGGTTTTGGCAGGCTTGACC 61.115 55.000 0.00 0.39 39.61 4.02
1454 1493 5.465390 GGTAAAACTCATTGAAGGTTTTGGC 59.535 40.000 19.30 14.03 41.34 4.52
1456 1495 6.198216 CGTGGTAAAACTCATTGAAGGTTTTG 59.802 38.462 19.30 5.95 41.34 2.44
1466 1505 3.686016 AGATGGCGTGGTAAAACTCATT 58.314 40.909 0.00 0.00 0.00 2.57
1492 1531 4.940654 AGAAGAAAGGCTTACTCAATGAGC 59.059 41.667 10.62 0.00 39.23 4.26
1498 1537 5.788450 CTCTTGAGAAGAAAGGCTTACTCA 58.212 41.667 16.44 16.44 38.16 3.41
1522 1561 3.940209 CTCCCTAGCAATGCTCTCTAG 57.060 52.381 12.53 2.98 40.44 2.43
1575 1617 6.902771 ACTACCAATCTGTAGGCTGTATAG 57.097 41.667 0.00 0.00 42.04 1.31
1577 1619 7.857404 AATACTACCAATCTGTAGGCTGTAT 57.143 36.000 0.00 0.00 42.04 2.29
1603 1645 7.505248 TGCAGGCATCCAATAATATTTCAACTA 59.495 33.333 0.00 0.00 0.00 2.24
1611 1653 4.662966 TCCTGCAGGCATCCAATAATAT 57.337 40.909 28.91 0.00 34.44 1.28
1639 1681 5.183228 TCCGTAAAGGCTTAGGAATCAAAG 58.817 41.667 14.17 0.00 40.77 2.77
1682 1724 5.189145 ACCAAGGGAGTAGTACCTGTTTATG 59.811 44.000 0.66 0.00 37.13 1.90
1710 1752 3.540738 GTCCAAAACGTCGTTTTTCTGTG 59.459 43.478 28.61 19.31 42.11 3.66
1711 1753 3.188873 TGTCCAAAACGTCGTTTTTCTGT 59.811 39.130 28.61 9.47 42.11 3.41
1712 1754 3.749404 TGTCCAAAACGTCGTTTTTCTG 58.251 40.909 28.61 19.94 42.11 3.02
1713 1755 4.142556 ACATGTCCAAAACGTCGTTTTTCT 60.143 37.500 28.61 10.17 42.11 2.52
1714 1756 4.099824 ACATGTCCAAAACGTCGTTTTTC 58.900 39.130 28.61 21.53 42.11 2.29
1716 1758 3.375922 AGACATGTCCAAAACGTCGTTTT 59.624 39.130 26.23 26.23 45.06 2.43
1718 1760 2.557317 AGACATGTCCAAAACGTCGTT 58.443 42.857 22.21 4.40 0.00 3.85
1731 1782 5.138125 CCAATGTTTGGCTTAAGACATGT 57.862 39.130 12.92 0.00 45.17 3.21
1778 1829 6.773976 TCAAGTTCCCAAGCTAAATATTGG 57.226 37.500 0.00 0.00 44.64 3.16
1779 1830 7.276438 GCTTTCAAGTTCCCAAGCTAAATATTG 59.724 37.037 0.00 0.00 38.89 1.90
1787 1838 1.332195 GGCTTTCAAGTTCCCAAGCT 58.668 50.000 9.13 0.00 41.25 3.74
1810 1861 8.187354 TCTCGAGATAAATCTATACTGCTACG 57.813 38.462 12.08 0.00 37.25 3.51
1880 1934 4.841443 TGACGACTAGTTTCTACTGCAA 57.159 40.909 0.00 0.00 35.78 4.08
1924 1978 1.127701 CAACGTTTTGGACATTGGCG 58.872 50.000 0.00 0.00 28.16 5.69
1926 1980 1.127701 CGCAACGTTTTGGACATTGG 58.872 50.000 0.00 0.00 32.30 3.16
1942 1996 0.250124 CTTGGGTACACTGGAACGCA 60.250 55.000 0.00 0.97 36.85 5.24
1943 1997 0.953960 CCTTGGGTACACTGGAACGC 60.954 60.000 0.00 0.00 0.00 4.84
1944 1998 0.321298 CCCTTGGGTACACTGGAACG 60.321 60.000 8.92 0.00 0.00 3.95
1945 1999 1.003233 CTCCCTTGGGTACACTGGAAC 59.997 57.143 5.51 0.00 0.00 3.62
1946 2000 1.358152 CTCCCTTGGGTACACTGGAA 58.642 55.000 5.51 0.00 0.00 3.53
1947 2001 0.192566 ACTCCCTTGGGTACACTGGA 59.807 55.000 5.51 5.57 0.00 3.86
1948 2002 1.831736 CTACTCCCTTGGGTACACTGG 59.168 57.143 5.51 0.00 0.00 4.00
1949 2003 2.233922 CACTACTCCCTTGGGTACACTG 59.766 54.545 5.51 0.00 0.00 3.66
1974 2028 2.223112 CGGCATTGAATCTGACCGAAAG 60.223 50.000 0.00 0.00 43.19 2.62
1975 2029 1.737236 CGGCATTGAATCTGACCGAAA 59.263 47.619 0.00 0.00 43.19 3.46
1976 2030 1.066502 TCGGCATTGAATCTGACCGAA 60.067 47.619 0.00 0.00 45.84 4.30
1978 2032 1.368641 TTCGGCATTGAATCTGACCG 58.631 50.000 0.00 0.00 41.92 4.79
1979 2033 3.129287 ACATTTCGGCATTGAATCTGACC 59.871 43.478 0.00 0.00 0.00 4.02
1980 2034 4.361451 ACATTTCGGCATTGAATCTGAC 57.639 40.909 0.00 0.00 0.00 3.51
1981 2035 4.142403 GGAACATTTCGGCATTGAATCTGA 60.142 41.667 0.00 0.00 0.00 3.27
1982 2036 4.107622 GGAACATTTCGGCATTGAATCTG 58.892 43.478 0.00 0.00 0.00 2.90
1983 2037 4.019174 AGGAACATTTCGGCATTGAATCT 58.981 39.130 0.00 0.00 0.00 2.40
1984 2038 4.107622 CAGGAACATTTCGGCATTGAATC 58.892 43.478 0.00 0.00 0.00 2.52
1985 2039 3.763360 TCAGGAACATTTCGGCATTGAAT 59.237 39.130 0.00 0.00 0.00 2.57
2006 2111 7.897575 ATATATTTGAGCTTCTGAACGGATC 57.102 36.000 0.00 0.00 0.00 3.36
2011 2116 7.012704 TGGCTGAATATATTTGAGCTTCTGAAC 59.987 37.037 21.04 9.88 0.00 3.18
2019 2124 5.044428 CAGCTGGCTGAATATATTTGAGC 57.956 43.478 16.59 16.65 46.30 4.26
2093 2215 8.330466 TGTTTCTCACAAAACTTTCTGAAGTA 57.670 30.769 1.73 0.00 37.53 2.24
2102 2224 3.513515 TGCCCTTGTTTCTCACAAAACTT 59.486 39.130 1.73 0.00 45.11 2.66
2114 2236 0.178992 TACTGCAGCTGCCCTTGTTT 60.179 50.000 34.64 13.55 41.18 2.83
2144 2266 5.215252 TCTTTCTCGAGTTCATCTTTGGT 57.785 39.130 13.13 0.00 0.00 3.67
2146 2268 6.863645 TGTACTCTTTCTCGAGTTCATCTTTG 59.136 38.462 13.13 0.00 41.27 2.77
2153 2275 5.123805 ACCTTGTACTCTTTCTCGAGTTC 57.876 43.478 13.13 0.00 41.27 3.01
2160 2282 3.640029 TGTCCGAACCTTGTACTCTTTCT 59.360 43.478 0.00 0.00 0.00 2.52
2162 2284 3.133362 TGTGTCCGAACCTTGTACTCTTT 59.867 43.478 0.00 0.00 0.00 2.52
2166 2288 1.069668 GGTGTGTCCGAACCTTGTACT 59.930 52.381 0.00 0.00 33.40 2.73
2176 2298 2.131776 AAACAAAAGGGTGTGTCCGA 57.868 45.000 0.00 0.00 37.00 4.55
2178 2300 5.585820 TTCTAAAACAAAAGGGTGTGTCC 57.414 39.130 0.00 0.00 0.00 4.02
2221 2345 4.339247 GCTATGCCAAATAAAGCAGAGGAA 59.661 41.667 8.51 0.00 45.99 3.36
2238 2362 2.903798 AGCTCTGTTGAGAAGCTATGC 58.096 47.619 0.00 0.00 42.73 3.14
2292 2417 7.984050 TGACATCCAAATGTTTTCTTTTTAGCA 59.016 29.630 0.00 0.00 46.20 3.49
2307 2432 8.041919 TGCAATATTTTGTGATGACATCCAAAT 58.958 29.630 22.09 19.01 35.17 2.32
2313 2438 9.491675 TTCTTTTGCAATATTTTGTGATGACAT 57.508 25.926 0.00 0.00 35.17 3.06
2316 2441 9.545105 ACTTTCTTTTGCAATATTTTGTGATGA 57.455 25.926 0.00 0.00 35.17 2.92
2325 2450 8.428852 ACCTGGTTTACTTTCTTTTGCAATATT 58.571 29.630 0.00 0.00 0.00 1.28
2326 2451 7.962441 ACCTGGTTTACTTTCTTTTGCAATAT 58.038 30.769 0.00 0.00 0.00 1.28
2328 2453 6.233905 ACCTGGTTTACTTTCTTTTGCAAT 57.766 33.333 0.00 0.00 0.00 3.56
2329 2454 5.669164 ACCTGGTTTACTTTCTTTTGCAA 57.331 34.783 0.00 0.00 0.00 4.08
2331 2456 5.278808 CCCTACCTGGTTTACTTTCTTTTGC 60.279 44.000 3.84 0.00 0.00 3.68
2333 2458 5.103387 ACCCCTACCTGGTTTACTTTCTTTT 60.103 40.000 3.84 0.00 29.75 2.27
2337 2462 5.705397 ATACCCCTACCTGGTTTACTTTC 57.295 43.478 3.84 0.00 37.31 2.62
2338 2463 7.587375 TTAATACCCCTACCTGGTTTACTTT 57.413 36.000 3.84 0.00 37.31 2.66
2341 2466 7.140522 TCATTAATACCCCTACCTGGTTTAC 57.859 40.000 3.84 0.00 37.31 2.01
2342 2467 7.768324 TTCATTAATACCCCTACCTGGTTTA 57.232 36.000 3.84 0.00 37.31 2.01
2343 2468 6.661740 TTCATTAATACCCCTACCTGGTTT 57.338 37.500 3.84 0.00 37.31 3.27
2344 2469 6.858792 ATTCATTAATACCCCTACCTGGTT 57.141 37.500 3.84 0.00 37.31 3.67
2346 2471 7.563556 ACAAAATTCATTAATACCCCTACCTGG 59.436 37.037 0.00 0.00 0.00 4.45
2347 2472 8.533569 ACAAAATTCATTAATACCCCTACCTG 57.466 34.615 0.00 0.00 0.00 4.00
2348 2473 9.555411 AAACAAAATTCATTAATACCCCTACCT 57.445 29.630 0.00 0.00 0.00 3.08
2349 2474 9.811995 GAAACAAAATTCATTAATACCCCTACC 57.188 33.333 0.00 0.00 0.00 3.18
2350 2475 9.811995 GGAAACAAAATTCATTAATACCCCTAC 57.188 33.333 0.00 0.00 0.00 3.18
2353 2478 7.857456 AGGGAAACAAAATTCATTAATACCCC 58.143 34.615 0.00 0.00 32.48 4.95
2359 2484 8.303876 GCACTAGAGGGAAACAAAATTCATTAA 58.696 33.333 0.00 0.00 0.00 1.40
2360 2485 7.450014 TGCACTAGAGGGAAACAAAATTCATTA 59.550 33.333 0.00 0.00 0.00 1.90
2362 2487 5.774690 TGCACTAGAGGGAAACAAAATTCAT 59.225 36.000 0.00 0.00 0.00 2.57
2363 2488 5.136828 TGCACTAGAGGGAAACAAAATTCA 58.863 37.500 0.00 0.00 0.00 2.57
2381 2515 3.655211 CCCCCAAGAGCCTGCACT 61.655 66.667 0.00 0.00 0.00 4.40
2394 2528 2.285144 TCCGTCCCTCTTTCCCCC 60.285 66.667 0.00 0.00 0.00 5.40
2397 2531 2.301009 TGTTTACTCCGTCCCTCTTTCC 59.699 50.000 0.00 0.00 0.00 3.13
2398 2532 3.672767 TGTTTACTCCGTCCCTCTTTC 57.327 47.619 0.00 0.00 0.00 2.62
2399 2533 3.581332 TGATGTTTACTCCGTCCCTCTTT 59.419 43.478 0.00 0.00 0.00 2.52
2403 2537 2.253610 TGTGATGTTTACTCCGTCCCT 58.746 47.619 0.00 0.00 0.00 4.20
2404 2538 2.754946 TGTGATGTTTACTCCGTCCC 57.245 50.000 0.00 0.00 0.00 4.46
2408 2542 3.125316 GCTCCTTTGTGATGTTTACTCCG 59.875 47.826 0.00 0.00 0.00 4.63
2418 2552 2.158623 TGTGGAACTGCTCCTTTGTGAT 60.159 45.455 0.00 0.00 45.64 3.06
2423 2557 1.140312 TCCTGTGGAACTGCTCCTTT 58.860 50.000 0.00 0.00 45.64 3.11
2428 2562 0.326264 GGTGATCCTGTGGAACTGCT 59.674 55.000 0.00 0.00 38.04 4.24
2429 2563 1.021390 CGGTGATCCTGTGGAACTGC 61.021 60.000 0.00 0.00 38.04 4.40
2558 2692 1.604915 GGAGAAGGACTTGAGGCCC 59.395 63.158 0.00 0.00 0.00 5.80
2646 2780 3.259064 CACTTGTATATAATCCGCCGGG 58.741 50.000 1.90 0.00 0.00 5.73
2679 2816 3.505464 TTCTTCTCGTGGTAAGCTAGC 57.495 47.619 6.62 6.62 0.00 3.42
2692 2829 8.857216 CACAGTTGCATCATTATTTTTCTTCTC 58.143 33.333 0.00 0.00 0.00 2.87
2847 3001 2.100087 TGGTTTGAAGGGAAAACGCTTC 59.900 45.455 16.28 16.28 38.21 3.86
2850 3004 1.679153 TCTGGTTTGAAGGGAAAACGC 59.321 47.619 0.00 0.00 38.21 4.84
2877 3033 3.566322 TCCCAACGTTAGGTTCAACATTG 59.434 43.478 12.62 0.00 36.49 2.82
2904 3060 8.827177 TTTCAGATACCTTACTTGTGTGTTAG 57.173 34.615 0.00 0.00 0.00 2.34
2906 3062 7.773690 AGTTTTCAGATACCTTACTTGTGTGTT 59.226 33.333 0.00 0.00 0.00 3.32
2907 3063 7.226720 CAGTTTTCAGATACCTTACTTGTGTGT 59.773 37.037 0.00 0.00 0.00 3.72
2915 3071 5.582665 CCTCTGCAGTTTTCAGATACCTTAC 59.417 44.000 14.67 0.00 39.56 2.34
2919 3075 4.207891 TCCTCTGCAGTTTTCAGATACC 57.792 45.455 14.67 0.00 39.56 2.73
2921 3077 5.620206 TGTTTCCTCTGCAGTTTTCAGATA 58.380 37.500 14.67 0.00 39.56 1.98
2935 3093 4.165372 TGTCCAGGTTACTTTGTTTCCTCT 59.835 41.667 0.00 0.00 0.00 3.69
2942 3100 4.755123 CGAGAAATGTCCAGGTTACTTTGT 59.245 41.667 0.00 0.00 0.00 2.83
3002 3160 9.415544 TCCTAAGTTTCGACTAATCAAACTTAC 57.584 33.333 10.72 0.00 41.36 2.34
3003 3161 9.415544 GTCCTAAGTTTCGACTAATCAAACTTA 57.584 33.333 13.06 13.06 41.36 2.24
3022 3180 7.807680 AGAAAAGCATTAAGTTTCGTCCTAAG 58.192 34.615 0.00 0.00 36.57 2.18
3070 3228 4.291540 TGAGTTGTGTTGTTTGAGATGC 57.708 40.909 0.00 0.00 0.00 3.91
3099 3257 2.503765 TGAGTGGTTCACTTGACCTCAA 59.496 45.455 1.90 0.00 45.44 3.02
3144 3484 6.206048 TCACATGATAATCCTGATGTTCATGC 59.794 38.462 21.05 0.00 40.72 4.06
3178 4032 2.223852 CGTGGTTTTTACCCCAACTTGG 60.224 50.000 0.12 0.12 37.25 3.61
3207 4061 9.872684 ATGATAGTGGAAGAATATTTTGATGGT 57.127 29.630 0.00 0.00 0.00 3.55
3226 4080 8.913487 TGTTGCATCTCATATTTGATGATAGT 57.087 30.769 15.21 0.00 41.69 2.12
3231 4085 9.529325 AGAAAATGTTGCATCTCATATTTGATG 57.471 29.630 9.28 9.28 41.96 3.07
3269 4123 5.045872 GCAGAACTTGTTGCATCTCTTTTT 58.954 37.500 0.00 0.00 40.02 1.94
3270 4124 4.340381 AGCAGAACTTGTTGCATCTCTTTT 59.660 37.500 0.00 0.00 42.67 2.27
3271 4125 3.887716 AGCAGAACTTGTTGCATCTCTTT 59.112 39.130 0.00 0.00 42.67 2.52
3272 4126 3.484407 AGCAGAACTTGTTGCATCTCTT 58.516 40.909 0.00 0.00 42.67 2.85
3273 4127 3.072944 GAGCAGAACTTGTTGCATCTCT 58.927 45.455 0.00 0.00 42.67 3.10
3310 4164 8.589338 AGAGTAACACTTTTGATGTATGAGAGT 58.411 33.333 0.00 0.00 0.00 3.24
3353 4207 5.687285 CAGAATTTATTATTCAAGCGGGTGC 59.313 40.000 0.00 0.00 43.24 5.01
3360 4214 9.289782 CCCTACCCTCAGAATTTATTATTCAAG 57.710 37.037 0.00 0.00 0.00 3.02
3361 4215 7.724061 GCCCTACCCTCAGAATTTATTATTCAA 59.276 37.037 0.00 0.00 0.00 2.69
3376 4230 1.923395 CACCCAAGCCCTACCCTCA 60.923 63.158 0.00 0.00 0.00 3.86
3387 4241 5.491982 AGAGCTAGTAAATTCACACCCAAG 58.508 41.667 0.00 0.00 0.00 3.61
3398 4252 9.000486 GTGGTTTACTTTGAAGAGCTAGTAAAT 58.000 33.333 16.38 0.00 42.01 1.40
3404 4258 5.071250 TGGAGTGGTTTACTTTGAAGAGCTA 59.929 40.000 0.00 0.00 40.53 3.32
3417 4271 5.705441 GTGATCTGTGATTTGGAGTGGTTTA 59.295 40.000 0.00 0.00 0.00 2.01
3418 4272 4.520492 GTGATCTGTGATTTGGAGTGGTTT 59.480 41.667 0.00 0.00 0.00 3.27
3499 4353 5.175859 ACACACCGGTTTAGATTCATACAG 58.824 41.667 2.97 0.00 0.00 2.74
3506 4360 3.945346 TGCATACACACCGGTTTAGATT 58.055 40.909 2.97 0.00 0.00 2.40
3516 4370 3.561143 TCCCCAATTATGCATACACACC 58.439 45.455 5.74 0.00 0.00 4.16
3538 4392 6.463331 CCACTGTCGGCCTTATACCTAATTAA 60.463 42.308 0.00 0.00 0.00 1.40
3539 4393 5.011329 CCACTGTCGGCCTTATACCTAATTA 59.989 44.000 0.00 0.00 0.00 1.40
3542 4396 2.696707 CCACTGTCGGCCTTATACCTAA 59.303 50.000 0.00 0.00 0.00 2.69
3560 4414 3.064900 AGACAGAAGAAATGGCTCCAC 57.935 47.619 0.00 0.00 25.85 4.02
3561 4415 3.328931 AGAAGACAGAAGAAATGGCTCCA 59.671 43.478 0.00 0.00 33.90 3.86
3616 4471 0.326522 TGGGCTGGCCAGAATCTAGA 60.327 55.000 37.21 8.87 37.98 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.