>input_sequence_46270
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------ATGCCTC
CCCCGCTTTGCTTTCGGCAGGAGCAACGCCAACGCCGTTGCCTTGGCCTCACACAAGGAACACCGGCGGCACGCACG-CC
CCCACATATACTCCTCCCCAGCCCCCGTGCTTGCATGTGCACAAGAAACCTCCTTTCTTCTCACCACAGCAGCAAGGAAA
CCCGCCCTTCCACGCCCACAAAGATCAGATCAATGGGTCAGGCCGTCACCAAGGCGAAGCAAGGTATGATCATCGACGAA
CACTAGCTACTGGG----TCGCGCGATCTCGGGTCAACCATCTTTGCAAATGCTTGCTGGTTTTGCTTCTAACATGACTG
ATGTTTCTGGTAGAGGCCGGGCGGGCGACGCAGAAGAACGACAAGGACGGCAAGGCTGTGGCCAACCATAATAACGCCAA
GGAGCAGCTCATCAAATTTATGGACAACAACTACGACGAAAAGGTCAAGCCTGCCAAAACCTTCAATGAGTTTTACCACG
CCATCTTCGAGCTCATTGAGTAAGCCTTTCTTCTCAAGAGCTAGAGAGCATTGCTAG--GGAGCTGCTAGTATAACGCAT
CAT-TTGTTTTAGTATCTATACAGCCTACAGATTGGTAGTATTATAGTTGAAATATTATTGGATGCCTGCAGGAATTCTC
CTTTGATTCCTAAGCCTTTACGGATTAAAAGTTCATGCATGCGCATAAACAGGTACTACTCCCTTGGTACACACAGAAAA
A---------CGACGTTTTGGACATGTCTTAAGCCAAACATTGGAAACTTTGACGACTGATATTGACTCCAATATTTAGC
TTGGGAACTTGAAAGCCATACGTAGCAGTATAGATTTATCTCGAGAAGTAATTTCTGAATATTAC---AATTTTGTTTTT
CGTTATACATATATTGCAGTAGAAACTAGTCGTCAAAGTTATATATCTGAAAAAATGCGCCAATGTCCAAAACGTTGCGT
TCCAGTGTACCCAAGGGAGTAGTGTAGCTTTCGGTCAGAT----------------------------------------
-----------TCAATGCCGAAATGTTCCTGATCCGTTCAGAAGCTCAAATATATTCAGCCAGCTGAAACCTCATCGATG
GTG-----------------ATACCTAACAATTTCTATCTGTTATTTTGCATTCTACTTCAGAAAGTTTTGTGAGAAACA
AGGGCAGCTGCAGTACAGGATGCCAACCAAAGATGAACTCGAGAAAGAGTACAAGGTTCGG--ACACACCCTTTTGTTTT
AGAATAATAATACTATAAAGGAGGTTCCTCTGCTTTATTTGGCATAGCTTCTCAACAGAGCTTAGAATCTTTCTTTGGTT
TCAAAACTTTT-AAATTGCTAAAAAGAAAACATTTGGATGTCATCACAAAATATTGCAAAAGAAAGTAAACCAGGTAGGG
GTATTAATGA---------ATTTTGTTTCCCTCTAGTGCAGGCTCTTGGGGGAAAGAGGGACGGAGTAAACATCACAAAG
GAGCAGTTCCACAGGATCACCGAGAACCTCGTCACGGTGAACAGCTTCAGCTTCGGCAAGGCCGCCTTCGACGTGCTCGT
GGTCCTCTTCGGCGCGCCGATGTGCGCGCTCCTCGTCAAGAGGGTCGTCCCGGGCCTCAAGTCCTTCTCCGACGACGTCG
TCATCCCGGTGGCCACCTCCGGCGCCGTCGTGTACCTGGCCAAGACCAACAAGCTGTGA---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------
>chr1A_1_TraesCS1A01G241800
GGATGGAAACAAAGTCATGGTACATGGCAAAGGGTTTTATTCTGTTTTCTCAGAATATTTTCCTGCATCGCTGCCTCTGC
AACAGATGATGTCATTTGTAAAACTACTAATATAAGATATGCTTGCAGGTGGATGTGTATTTACTACCTCAGTCTGCTTT
TCCAACTGGAGGTCTATATTTCAAGAACAAAAAATGGGTCAAGGAGACAAAGGGCAAGCATGTCATTATACATAACAACT
ACATAACAGGGTTTGAAAAGAAGATAAAACGCTTCCGTGATCATAAACTCTGGCTGGTGGATGAGCACAGCGACGAGTCA
CCACTTGGTAAAATATGAGCAAGCTGTA------------CATCTATCCTTGCTGCAGCA---TCACAATTTTGTAGCTG
GTGTCTGCCCAACCAGATGTTGGGTGATTTTCCATCCACCACATGGAATTCAACAATCGAATTTGAACACTGGATCCGCA
TGCAGAAGAC------TCCATCTGTACATCAAGGCCCTCAGGAGCTAAGCTTTCTCATGCAGTCCATCTTTCTGAAGTAC
TCCCTCCGTCCCAAAATAAGTGACTCAACTTTACACTAACTTTGTACTAAAGTTAGTACAAAGTTAAGTCACTTATTTTG
GGACGGAGGGAGTACATTTTTGTAATTGGAAGTGGCTGGTCGAGGAGACGAGTAAGATCTCAGGGCATGAATGAATAGGT
TTTGTGGCTATGAGTAGCGTCCAAGTCCATTGATTAATTCACTGGGTCTGTATAGCATTGTAGTTTTGTGAG---TTTGT
ACCATTATTGTTATTAAAAAGCGCAGCATTTTTGTACACTAGACCGCTTGCAAGTAC-----TATTGCTTATCATC----
TTATAGAGGGCATACTGATTCAATTGCGACCGTGCAAGTTTCCATAATCAACATTCTCATATTTCAGATACGCCTCCAAT
TATAATATAACAGAATCCTAAGCTAGCGTCGCCGGGAGCCAGAACAAGTCCTGTTGTTGGACCCTTTCCTTTGATGCCTC
CCCCGCTTTGCTTTCGGCAGGAGCAACGCCAACGCCGTTGCCTTGGCCTCACACAAGGAACACCGGCGGCACGCACG-CC
CCCACATATACTCCTCCCCAGCCCCCGTGCTTGCATGTGCACAAGAAACCTCCTTTCTTCTCACCACAGCAGCAAGGAAA
CCCGCCCTTCCACGCCCACAAAGATCAGATCAATGGGTCAGGCCGTCACCAAGGCGAAGCAAGGTATGATCATCGACGAA
CACTAGCTACTGGG----TCGCGCGATCTCGGGTCAACCATCTTTGCAAATGCTTGCTGGTTTTGCTTCTAACATGACTG
ATGTTTCTGGTAGAGGCCGGGCGGGCGACGCAGAAGAACGACAAGGACGGCAAGGCTGTGGCCAACCATAATAACGCCAA
GGAGCAGCTCATCAAATTTATGGACAACAACTACGACGAAAAGGTCAAGCCTGCCAAAACCTTCAATGAGTTTTACCACG
CCATCTTCGAGCTCATTGAGTAAGCCTTTCTTCTCAAGAGCTAGAGAGCATTGCTAG--GGAGCTGCTAGTATAACGCAT
CAT-TTGTTTTAGTATCTATACAGCCTACAGATTGGTAGTATTATAGTTGAAATATTATTGGATGCCTGCAGGAATTCTC
CTTTGATTCCTAAGCCTTTACGGATTAAAAGTTCATGCATGCGCATAAACAGGTACTACTCCCTTGGTACACACAGAAAA
A---------CGACGTTTTGGACATGTCTTAAGCCAAACATTGGAAACTTTGACGACTGATATTGACTCCAATATTTAGC
TTGGGAACTTGAAAGCCATACGTAGCAGTATAGATTTATCTCGAGAAGTAATTTCTGAATATTAC---AATTTTGTTTTT
CGTTATACATATATTGCAGTAGAAACTAGTCGTCAAAGTTATATATCTGAAAAAATGCGCCAATGTCCAAAACGTTGCGT
TCCAGTGTACCCAAGGGAGTAGTGTAGCTTTCGGTCAGAT----------------------------------------
-----------TCAATGCCGAAATGTTCCTGATCCGTTCAGAAGCTCAAATATATTCAGCCAGCTGAAACCTCATCGATG
GTG-----------------ATACCTAACAATTTCTATCTGTTATTTTGCATTCTACTTCAGAAAGTTTTGTGAGAAACA
AGGGCAGCTGCAGTACAGGATGCCAACCAAAGATGAACTCGAGAAAGAGTACAAGGTTCGG--ACACACCCTTTTGTTTT
AGAATAATAATACTATAAAGGAGGTTCCTCTGCTTTATTTGGCATAGCTTCTCAACAGAGCTTAGAATCTTTCTTTGGTT
TCAAAACTTTT-AAATTGCTAAAAAGAAAACATTTGGATGTCATCACAAAATATTGCAAAAGAAAGTAAACCAGGTAGGG
GTATTAATGA---------ATTTTGTTTCCCTCTAGTGCAGGCTCTTGGGGGAAAGAGGGACGGAGTAAACATCACAAAG
GAGCAGTTCCACAGGATCACCGAGAACCTCGTCACGGTGAACAGCTTCAGCTTCGGCAAGGCCGCCTTCGACGTGCTCGT
GGTCCTCTTCGGCGCGCCGATGTGCGCGCTCCTCGTCAAGAGGGTCGTCCCGGGCCTCAAGTCCTTCTCCGACGACGTCG
TCATCCCGGTGGCCACCTCCGGCGCCGTCGTGTACCTGGCCAAGACCAACAAGCTGTGACCCGGCGGATTATATACAAGT
GTC---ACTGCTACTGCTAGCTTACCACGAGAAGAAAAATAATG---------------ATGCAACTGTGTGGTGGCTCG
ATCGCGTCCAGATTGCAAAATCTGT-AAAAAGTATCTGTAAAGATGATTGAAAC-TTTAGTGATTTTTCTCTGTTCTTAC
GGGGGCGTGTGTGTGCCCGCCCCGCGGCAATGTTGCAGTAGAAGCGTTTT--CCCTTCAAACCAGAAAACGGCAATGTTG
AACCTAACGTTGGGAATTACTAACACACAAGTAAGGT--ATCTGAAAACTGCAGAGGAAACAAAGTAACCTGGACATTTC
TCGGTCATGAAAGGAAACATATGCATCAACTTGTATGGAGTAAGTTTGATTAGTCGAAACTTAGGACGAAACTTAATGCT
TTTCTTAACTTCGTTCAGCGTGACGCTGCATCTCAAACAACACAACTCATATGTGTTTGAGGTC----------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AA
GTGAACCACTCAAAACATCAGCCGAAAATCAAC--------ACGCATGAACATCAGGATTATCATGTGA-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------AAAGCCCCCCAAGTTGGGGTAAAAACCACGGACTGAAACCATCAAAATATTCTTCCA
CTATCATCAAATATGAGATGCAACATTTTCTCAAAAAAAAAAAAAAAGAGATGCAACAAGTTCTGCTCTAGGTAGCACTA
AAGACTCTCATACATCAAAAGTGTTACTCTAATCCCGAGCACAAATGCACCCGCTTGAATAATAAATTCTGAGGGTAGGG
CTTGGGTGTGAATTTACTAGCTCTTCAAAGTAAACCACTCCAAATCACAGATCACTGCCTTAGGCCGAAGATGTATGAAC
CTGAGTACCAGTTTGTCGAATCCGAGAAGGATCTGTATGAATCTAAACCGGTGTGTATGCATAATTGGGGATTAATTAGG
TATAAGGCCGACAGT-GGAGCCATTTCTTCTGTCTTCTCTTGTTAATTAGGAAATAACTATTTGTCAATTTCTAGATTCT
GGCCAGCCCAGAAGAAATAA
>chr1B_1
GGATGGAAACAAAGTCATGGTAAATGACAAAGGGTTTTATTCTGTTTTCGCAAAATATTTTCCTGCATCGCTGCCGCTGC
AACAGATAATGTCATTTGTAAAACTACTAATATAAGATATGCTTGCAGGTGGACGTGTATTTACTACCTCAGTCTGCTTT
TCCAACTGGAGGTCTATATTTCAAGAACAAAACATGGGTCAAGGAGACAAAGGGCAAGCATGTCATTATACACAACAACT
ACATAACAGGGTTTGAAAAGAAGATAAAACGCTTCCGTGATCATAAACTCTGGCTGGTGGATGAACACGGTGACGAGTCA
CCACTTGGTAAAATATGAGCAAGCTGTAAAGGCTGGAGTACATCTATCCTTGCAGCAGCAGCATCGCAGTTTTGTGGATG
GTGTCTGCCCAACCAGATGTTGG----------ATCCACCACATGGAATTCAACAATCGAATTCGAACACCAGATCCATA
TGCAGAAGAC------TCCCTTTGTACATCAAGGCCCTCAGGGGCTACGCTTTCTCATGCAGTTCATCTTTCTGAAGTAC
ATC-----------------------------------------------------------------------------
------------------TCTGTAACTGGAAATGGCTGGTCGAGGAGACCAGTAAGATTTTGTGGCATGAATGAAGAGAT
TTTGTGGCCATGAGTATCGTGTAAGTCCATGGGTTAATTCACTGGGTCTGTATAGCATTGTAGTTTTGTGAA---TTTGT
ACTATTATTGTTACTAAAAGT-GCAGCATTTTTGTACACTAGATCTCTCCCAAGTACAGTACTATTGCCCCTCATC----
TTTT-AAAGGCATATTGATTCAATTGTGACCGTGCAAGTTTCCATAATCAACATTCTCATCTTTCAGATACGCCTCCAAT
TATAGC--AACAGAATCCTAAGCTAGCGTCGCCGGGAGCCAGAACAAGTCCTGTTGTTGGACCCTTTCCTTTGATGCCTC
CCCCACTTTGCTTTCCGCTGGAGCAACGCC------GTTGCCTTGGCCTCACACAAGGAACACCGGCGGCACGCACGCCC
CCCACATATACTCC-CCCCAGCCCCCGTGCTTGCATGTGCACAAGAAACCTCCTTTCTTCTCAGCACAGCAGGAAGGAAA
CCCACCCTCCTACGTGGACAAAGATCAGATCAATGGGTCAGGCCGTCGCCAAGGCGAAGCAAGGTATGATCGA----GAA
CACTAGCTACCGGGTCCATCGCGCGATCTCGGGTCAACCATCTTTGCAAATGCTTGCTAGTTTTGCTTCTAACATGAGTG
ATGTTTCTGGTAGAGGCCGGGCGGGCAACGCAGAAGAACGACAAGGACGGCAAGGCTGTGGCCAACCGTAATGACGCCAA
GGAGCAGCTCATCGAATTTATGGATAAGAACTA---CGATAAAGTCAAGCCTACGAAAACCTTCGATGAGTTTTATCATG
CCATCTTCGAACTCATCGAGTAAGCCTT-CTTCTCAACAGTTGGAGAGCACTGCTAGGAGGAGCTGCTAGTGCAACGCAT
CATTTTGTTTTAGTAT--CTACAGCCTACATATTAGTAGTACTACAGTTGAATTATTATTGGATACATGCAGGAATTCTC
GTATGATTCCTAAGCCTTTATGGATTAAAAGTTCATGCACGCGTATAAACAGGTACTGCTCCCTTGGTACAATGGTACAC
ACAGAGAAAACGACGTTTTGGGCATATCTTAAGTCAAACCTTGCAAACTTTGA-----------------AATATTTTGC
TTGGGAACTTGAAAGCCATATGTATAGAT-----TTTATTTCGAGAAATGATTTCTGAATATTATAATAATTTTGTTGTT
CGTTATACATATACTGCAGTACAAATTAGTCGTCGAAGTTATATTCTG--AAAAATGTGTCAATGTCCAAAACGTCT---
---AGTGTACCCAAGGGAGTAGTATAG--------------------------------TAATAGCCTTTGGTCAGATTC
GTAGCATGCCGTCAATGCCAAAATGTACCTCATCCATTCAGAATTTCAAACATATTCAGCCAGCTGAAACCTCATCGATG
GTGTTTTATATTTAAGAAAAATACCTAACAATTTCTATCTGTTATTTTGCATTCCACTTCAGACAGTTTTGTGAGGAACA
AGGGCAGCTGCAGTACAGGATGCCATCAAAAGATAAGCTCGCGGAAGTGTACAAGGT-CAGATATATACCCTCTTCTTTT
TTGGA---------ATAAAGGAGGCTCCTCTGCTTTATTTGACATAGCTTCTCAACAGAGCTTAGAATCTTTCTTTGGTT
TCAAATCTTTCGAAATGGCTAAAAAGAAAACGTTTGGGTGCCATCATAACTTTATACTAAAC------------------
-------------TTAACGATTTTGTTTCCCTCTCGTGCAGGCTCTTAGG---AAGCCGGATGGAGTAAACCTCACCAAG
GGTCAGTTCCACACGATCACCGAGAACCTCGTCACGGTGCACAGCTTCAGCTTCGGCAAGGCCGCCTTCGACGTGCTCGT
GGTCCTCTTTGGCGCGCCGATGTGCGCGCTCCTCGTCAAGAGGGTCGTCCCCGGCCTCAAGTCCTTCTCCGACGACGTCG
TCATCCCGGTGGCCACCTCCGGCGCCGTCGTGTACCTGGCCAAGACCAACAAGCTGTGAGTCGGCGGATTATACGAGTGT
A-----ACTACTACTACTAGCTTACCACAAGAAGAAAAATAATGTGTCGAATCGTAATGATGCAACTGTGTGGTGGCTCG
ATCGCGTCCAGATTGCAAA--------------ATCTATAAAGATGATTGAAACTTTTAGTGATTTTTCTCTGTTCTTAC
GGGGGCATGTGTGCGTGCG-CCCGCGGCAATGTTGCAGTATAAACGTTTTTTCCCTTCAAACCAGAAAACGGTAATGTTG
AACCTGACGTTGGGTCA-------------------------TGAAAACTGCGGAGGAAGCAAAGTAACTTGGACA-TTC
TCGGTCATGAAAGGAAACATATGCATCAGG--------------------------------------------------
---------------------------------------------------TGTGTCTGAGGTC----------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AA
GTGAACCACTCAAAAGATCAGCCGAAAAATCAACACACATGACACATGAACATCAGGATTATCATGTGA-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------AAAGCCCT-CAAGTTGGGGTAAAAACAACGGACTGAA-CCATCCAAATATT------
--------------------------------------------------ATGCAACAAGTTATGCTCTAGGTAGCACTA
AAGGCTTTCATACATCAAAAGTGTTACTCTAATCCCGAGCACAAATACACCCGTATGGATAATAAATTTCGAGGGTAGGG
TTTTCGTGTTATTTTACCAGCTCTCCAAAGCCAACCACTCCAAATCGCAGATCGCTGCCTTAGGCCGAATATGTATGAAC
CTGAGTACCAGTTTGTCGAATCCGAGAAGGATTTGTATGGATCTAAACAC-TGTGTATGCATACTTGGGGAAGAACTAGG
TATAAGGCCGACACGGGGAGCCATTTCTTGTGTGTTCTCTTGTGAATTAGGAAATAACTATTTGTCAATTGCTAGATTCT
GGCCAGCCCAGAAGA-----
>chr1D_12
-----------AAGTCATGCTACATGACAAAGGGTTTTATTCTGTTTTCTCAGAATATTTTCCTGCATCGCTGCCTCCAC
AACAGATAATGTCATTTGTAAAACTACTAATATAAGATTTGCTTGCAGGTGGATGTGTATCTATTACCTCAGTCCGCTTT
TCCAACTGGAGGTCTATATTTCAAGAATAAAACATGGGTCAAGGAGACAAAGGGCAAGCATGTCATTATACATAACAACT
ACATAACAGGGTTTGAGAAGAAGATAAAACGCTTCCGTGATCATAAACTCTGGCTGGTGGATGAACACGGTGACGAGTCA
CCACTTGGTAAAATATGAGCAAGCTGTAAAGGCTGGAGTACATCTATCCTTGCAGCAGCA---TCACAGTTTTGTGGATG
GTGTCTGCCCAACCAGATGTTGG----------ATCCACCACATGGAATTCAACAATCGAATTCGAACACCAGATCCGTA
GGCAGAGGACTCCATTTCCATTTGTACATCAAGGCCCTCAGGGGCTACGCTTTCTCATGCAGTTCATCTTTCTGAAGTAC
ATC-----------------------------------------------------------------------------
------------------TTTGTAACTGGAAATGGCTGGTCGAGGAAACCAGTAAGATCTTA-GGCATGAATGAAGAGAT
TTTGTGGACATGAGTATAGTGTAAGTCCATTGATTAATTCACTGGGTCTGTATAGCATTGTAGTTTTGTGAAAAATTTGT
ACCATTATTGTTATTAAAAAGCGCAGCATTTTTGTACACTAGACCGCTTGCAAGTAC-----TATTGCTTATCAGCTTCT
TTATAAAGGGCATATTGATT---TTGTGACCGTGCAAGTTTCCATAATCAACATTCTCATCTTTCAGATACGCCTCCAAT
TATAGC--AACAGAATCCTAAGCTAGCGTCGCCGGGAGCCAGAACAAGTCCTGTTGTTGGACCCTTTCC-TTGATGCCTC
CCCCGCTTTGCTTTCCGGAGGAGCAACGCC------GTTGCCTTGGCCTCACACAAGGAACACCGGCGGCACGCACGCCC
CCCACATATACTCCCCCCCAGCCCCCGTGCTTGCATGTGCACAAGAAACCTCCTTTCTTCTCACCACAGCAGGAAGGAAA
CCCACCCTCCTACGTCGGCAAAGATCAGATCAATGGGTCAGGCCGTCGCCAAGGCAAAGCAAGGTATGATCATCGACGAA
CACTATCTACCCAG----TCGCGCGATCTCGGGTCATTCATCTTTGCAAATGCTTGCTGGTTTTGCTTCTAACATGAGTG
ATGTTTCTGGTAGAGGCCGGGCGGGCTACGCAGAAGGCCGACAAGGACGGCAAGGCTGTGGCCAACCATAATAACGCCAA
GGAGCAGCTCATCGAATTTATGGATAAGAACTAT---GATAAAGTCGAGCCTACGAAAACCTTCGATGAGTTTTACCACG
CCATCTTCGAACTCATCGAGTAAGCCTT-CTTCTCAAGAGTTAGAGAGCGTTGCTAG--GGAGCTGCTAGTACAACGCAT
CATTTTGTTTTAGTATATCTACATCCTACATATTAGTAGTATTACAGTTGAATTACTATTGGATACATGCAGGAATTCTC
ATTTGATTCCTACGCCTTTACGGATTAAAAGTTCACGCATGCGTATAAACAGGTACTACTCCCTTGGTACAACGGTACAC
GCAGAAAAAAAAACAACGT-----TATCTCAAGTCAAACAACGGAAACTTTGA-----------------AATATTTTGC
TTGGGAACTTGAAAGCCATATGTATAGAT-----TTTATTTCAAGAAGTGATTTCTGAATATTATAATAATTTTGTTGTT
CGTGATACATATACTACAGTACAAACTAATCGTCGAAGTTATATTCTG--AAAAATGAGTCAATGTCCAAAACGTCT---
---AGTGTACCCAAGGGAGTAGTGTAGTACTAATAGCCTTTTTTTTTGCGGGAAAGTACTAATAGCCTTTGGTCAGATTC
ATAGCATGCCGTCAATGCCGAAATGTTCCTCATCCATTCAGAATTTCAAACATATTCAGCCAGCTGAAACCTCATCGATG
GTGTTTTATATTTAAGAAAAATATCTAACAATTTCTATCTGTTATTTTGCATTCCACTTCAGACAGTTTTGTGAGGAACA
AGGGCAGCTGCAGTACAGGATGCCATCAAAAGATAAACTCGCGGAAGTGTACAAGGT-CAG--ATATACCCTCTTCTTTT
TTAGA---------ATAAAGGAGGCTCCTCTGCTTTATTTGACATAGCTTCTCAACAGAGCTTAGTATCTTTCTTTGGTT
TCAAATCTTTCGAAATGGCTAAAAAGAAAACGTTTCGGTGCCATCATAACTTTATACTAAACCAATGTCAATTAATATGG
ATCGGAGGGAGTATTAAGGATTTTGTTTCCCTCTCGTGCAGGCTCTTAGG---AAACCGGATGGAGTAAACCTCACCAAG
GGTCAGTTCCACACGATCACTGAGAACCTCGTCACGGTGCACAGCTTCAGCTTCGGCAAAGCCGCCTTCGACGTGCTCGT
GGTCCTCTTCGGCGCGCCGATGTGCGCGCTCCTCGTCAAGAGGGTCGTCCCCGGTCTCAAGTCCTTCTCCGACGACGTCG
TCATCCCCGTGGCCACCTCCGGCGCCGTCGTGTACCTGGCCAAGACCAACAAGCTGTGAGCCGGCGGATTATATACAAGT
GTAACTACTACTACTACTAGCTTACCACAAGAAGAAAAATAATGTGTCGAATCGTAATGATGCAACTGTGTGGTGGCTCG
ATCGCGTCCAGATTGCAAAATCTGTAAAAAAAAATCTGTAAAGATGATTGAAACTTTTAGTGATTTTTCTCTGTTCTTAC
GGAGGCGTGTGTGTGCGCG-GCCGTGGCAATGTTGCAGTATAAACGTTCT--TCCTTCAAACCAGAAAACGGTAATGTTG
AACCTAACGTTGGGAATTATTGGCACACAATTAAAGATAATCTGAAAACTGCGGAGGAACAAACGTAACCTGAACATTTC
TCGGTCATGAAAGGAAACATATGCATCAACTTGTATGGAACAAGTTTGATTAGTCGAAAGTTAGGACGAAACTTAATATT
TTT-----CTTTGTTCAGCGTGACGCTTCATCTCAAACAACACAACTCATATGTGTCTGAGGTCAAGTGCATAGAGGCTA
AACGTAGACCGAAAGTAGGCTGTGATTTAATTACACGAGTCGGGTCTTGAACTCAAGACCTCTTAACTCTAATACCATGT
AGAAGTGCATGCTCTAGGCAATACAACCAAAAGACCAATCTGATGAAAGAGACTAGACAATAAATTTATATGTCAACAAA
GTGAACCACTCAAAACATCAGCCGAAAATCAAC--------ACACATGAACATCAGGATTATCATGTGGAGTGCCATTTT
CAAGAAGACGAGGCGGCATCGGCTTCTTGAAGATAGAATAAGGTCCTCCCCGCCTAGCCCCCGTCCCGGTAATGTTTCAA
GCATCGTCGGAAGGTGTGTGGAGGTTTGTCTCCGATGGATCTCGTGGGATCCGGTCGGCGTTTATCTTCGGTGGATCCGA
CTGGATCCGGTCTTCGTTCGTCTACGTCTGTGTGTCTGCAGGTTGGATCCTTCCGGTCTATGTTTCTCTTCATCAGCGGC
GGTTGCTGTTCTGGTGCACTGGTCCTATGGGGCCTTTACACGATGACTTTCCGACTGTTTACTACAACAATGTTTGCCCG
GCTCCGACGAGGGAGGGGCGATGACGGTGGCGCGCCTTCGGCTTGCTCCAGTGCTTGTAGACGTCGCTAGGTGGTCTACG
GACTTAGATGCAAATTTTACTTCTAATGTTCTTTGTACTACCTTGACAGTTGATGAATAGATCGGAAGTCTGCCCCCCCT
CCAAAAAAAGGATTATCATGTGGAAAGCCTT-CAAGTTGTGGTAAAAACCACAGACTAAA-CCATTAAAATATTCTTCC-
CTATTATCAAATATAT-------------------------------GAGATGCAACAAGTTATGCTCTAGGTAGCACTA
AAGGCTCTCATACATCAAAAGTGTTACTCTAATCCCGAGCACAAATACACTCGTATGAATAATAAATTCCGAGGGTAGGG
TTTGGGTGTGATTTTACCAGCTCTTCAAAACCAACCACTCCAAATCACAGATCGCTGCCTTAGGCCGAAGATGCATGAAC
CCGAGTACCGTTTTGTTGAATCCGGGAAGGATTTGTATGGATCTAAACCAGTGTGTATGCATAATTGAGGAAGAACTAGG
TATAAGGC------------------------------------------------------------------------
--------------------
>SNPs
--------------------------S-----------------------------------------------------
-------S------------------------------------------------------------------------
--------------------------------S-----------------------------------------------
----------------------------------------------------------------S---S-S---------
-----------------------------------------------------S--------------S------S-S--
-----------------------SSSSSSSSSS------------------------------S------SS------S-
---------------------S--------------------S----S---------------S----------------
SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS-------S-----S-----------------S----------S-S------------S--S-
--------S-------S---SS-------------------------------------------------S--------
--------------------------------------------------------------------------------
-----S--------S-----------S---------------------------------S-------------------
----SSSS------------------------------------------------------------------------
---------------S--------------SSSSSS--------------------------------------------
--------------S---------------------------------------------------------S-------
---S----S-S---S-S------------------------------S--------------------------------
----------S------------------------------------------------------------------S--
--------------------------S-----------------------------------------------------
-------------S----------S--S-----SSS---S--S---------S-S---------S---------------
----------S-----S-----------S-----------S-------------------------------S-------
----------------S-S-----------S---S---------S-------S-----------S-S-------------
S------------------------------------------S---------------------------SSSSS-S-S
---------------------S---S-------S-------------------SSSSSSSSSSSSSSSSS-------S--
--------------------S---SSSS-SSSSS-----S---------S--------------S------------S--
-------------S-------S------------S---------SSSSSS-------S-S---------------SSSSS
SSS------------------------SSS-SSSSSSSS-----------------------------------------
------------------------------S----S-------SS-----S-----------------------------
------------------------------------------------------S--------S-----------S----
-------------------------S-S------S------S-S---S---------S-S----S-S-----S--S----
SS-SSSSSSSSSSS----------S----------------S--------------------------------------
-----S----S-----S--------------S-----S--S-----S--SS-SS-S-S---SS--SSSS-SSSSS--S--
S-SSS-SS--------------------------S------------S--SSS---SS---S---------S----S---
-SS----------S-------------------------S----------------------------------------
---------------------------------------------------S----------------------------
-----------------------------------------------------------S--------------------
--S------S-----S------------S---------------------------------------------------
-------------------------------SS-----------------------------------------------
----------------S--S--------------------S--S----------------------------S-------
-------------------S-SS-------S---S-S---------------S------S--------------------
---------------------------------------SS------------------S-----------------SS-
---SSSSS---S---------------S----------------------------S-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------S------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------SS----------------------------S------------------S
----S---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------S-----------------
---S------------------------------------------S------SS--------------S----------
S----------S-----S------------SS---------------------S--------------------------
--------------------------------S------S---------S---------------------SS--S----
-------------SS--------------S---S---------S--------------------------S---------
---------------SSSSS
>forward_657
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------TTG
GGACGGAGGGAGTACAT---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------
>reverse_2236
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------AAACA
AGGGCAGCTGCAGTA-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------
>forward_1135
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------ACGCC
CCCACATATACTCCT-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------
>reverse_2562
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-AGCAGTTCCACAGGATCACC-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------
>forward_1537
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------ACG
CCATCTTCGAGCTCATT---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------
>reverse_2563
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--GCAGTTCCACAGGATCACCG----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------
>forward_2528
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------CCCTCTAGTGCAGGCTCTTG--------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------
>reverse_4471
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------TCTAGATTCT
GGCCAGCCCA----------
