Multiple sequence alignment - TraesCS1A01G241500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G241500 chr1A 100.000 4253 0 0 1 4253 429481134 429485386 0.000000e+00 7854.0
1 TraesCS1A01G241500 chr1A 82.060 301 34 8 532 820 280265321 280265029 5.500000e-59 239.0
2 TraesCS1A01G241500 chr1A 79.245 265 36 10 1301 1556 200249013 200249267 2.630000e-37 167.0
3 TraesCS1A01G241500 chr1D 93.777 2105 69 27 1899 3991 332209282 332211336 0.000000e+00 3105.0
4 TraesCS1A01G241500 chr1D 89.040 958 65 20 952 1899 332207367 332208294 0.000000e+00 1151.0
5 TraesCS1A01G241500 chr1D 91.910 445 30 6 503 943 332206520 332206962 6.040000e-173 617.0
6 TraesCS1A01G241500 chr1D 95.486 288 4 4 3975 4253 332212233 332212520 6.480000e-123 451.0
7 TraesCS1A01G241500 chr1D 81.957 460 59 20 501 943 450232660 450233112 6.720000e-98 368.0
8 TraesCS1A01G241500 chr1D 78.731 268 42 7 1301 1561 308972146 308972405 9.460000e-37 165.0
9 TraesCS1A01G241500 chr1B 90.376 2338 116 50 1949 4253 446627439 446629700 0.000000e+00 2970.0
10 TraesCS1A01G241500 chr1B 83.621 464 54 13 501 943 446623293 446623755 2.370000e-112 416.0
11 TraesCS1A01G241500 chr1B 78.112 466 78 21 36 487 163574981 163574526 1.510000e-69 274.0
12 TraesCS1A01G241500 chr1B 77.570 428 73 14 504 918 319140056 319139639 1.980000e-58 237.0
13 TraesCS1A01G241500 chr6D 83.644 483 71 5 1 477 238501314 238501794 8.390000e-122 448.0
14 TraesCS1A01G241500 chr6D 81.532 222 33 7 1316 1532 340975505 340975723 4.370000e-40 176.0
15 TraesCS1A01G241500 chr4A 83.514 461 55 15 501 942 715891027 715890569 1.100000e-110 411.0
16 TraesCS1A01G241500 chr4A 80.242 248 37 9 1293 1532 13532160 13532403 4.370000e-40 176.0
17 TraesCS1A01G241500 chr4A 77.459 244 39 13 1694 1927 714537013 714537250 9.600000e-27 132.0
18 TraesCS1A01G241500 chr2D 82.151 465 60 13 501 942 596993433 596992969 1.120000e-100 377.0
19 TraesCS1A01G241500 chr2D 81.737 449 60 15 501 929 620381672 620381226 5.230000e-94 355.0
20 TraesCS1A01G241500 chr2D 79.401 267 34 12 1301 1556 630741112 630741368 7.310000e-38 169.0
21 TraesCS1A01G241500 chr3A 79.551 445 72 17 56 487 474739331 474738893 2.490000e-77 300.0
22 TraesCS1A01G241500 chr3A 77.465 497 93 15 1 484 458528134 458527644 3.240000e-71 279.0
23 TraesCS1A01G241500 chr6B 80.867 392 55 9 530 902 621304940 621304550 1.500000e-74 291.0
24 TraesCS1A01G241500 chr6B 85.978 271 22 10 546 801 642996034 642996303 4.190000e-70 276.0
25 TraesCS1A01G241500 chr2A 79.148 446 74 16 56 488 531874755 531875194 1.500000e-74 291.0
26 TraesCS1A01G241500 chr2A 77.600 500 92 18 1 487 38023767 38024259 6.960000e-73 285.0
27 TraesCS1A01G241500 chr2A 81.696 224 31 8 1316 1532 88276701 88276481 1.220000e-40 178.0
28 TraesCS1A01G241500 chr2A 94.737 38 1 1 1910 1946 235302406 235302443 1.650000e-04 58.4
29 TraesCS1A01G241500 chr5A 77.642 492 97 11 1 483 256199128 256199615 1.940000e-73 287.0
30 TraesCS1A01G241500 chr5A 80.247 243 35 9 1299 1532 167474342 167474580 2.030000e-38 171.0
31 TraesCS1A01G241500 chr7B 77.510 498 91 16 1 484 466329857 466329367 3.240000e-71 279.0
32 TraesCS1A01G241500 chr7B 82.315 311 46 5 958 1259 438362308 438361998 1.170000e-65 261.0
33 TraesCS1A01G241500 chr7A 77.246 501 94 17 1 487 468327465 468327959 4.190000e-70 276.0
34 TraesCS1A01G241500 chr7A 84.000 275 37 6 997 1265 667486404 667486131 1.520000e-64 257.0
35 TraesCS1A01G241500 chr4D 82.555 321 39 11 952 1259 11147580 11147264 2.520000e-67 267.0
36 TraesCS1A01G241500 chr5B 81.288 326 48 9 952 1266 387152749 387153072 7.060000e-63 252.0
37 TraesCS1A01G241500 chr5B 78.231 294 55 5 969 1253 662274493 662274786 3.380000e-41 180.0
38 TraesCS1A01G241500 chr3B 84.291 261 27 7 536 782 494396889 494396629 4.250000e-60 243.0
39 TraesCS1A01G241500 chr5D 83.951 243 22 11 952 1182 34041381 34041144 2.580000e-52 217.0
40 TraesCS1A01G241500 chr6A 78.834 326 60 6 951 1267 558628372 558628697 1.200000e-50 211.0
41 TraesCS1A01G241500 chr6A 77.570 321 56 16 952 1259 216075527 216075844 3.380000e-41 180.0
42 TraesCS1A01G241500 chr2B 79.297 256 42 9 1301 1549 670441322 670441573 7.310000e-38 169.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G241500 chr1A 429481134 429485386 4252 False 7854 7854 100.00000 1 4253 1 chr1A.!!$F2 4252
1 TraesCS1A01G241500 chr1D 332206520 332212520 6000 False 1331 3105 92.55325 503 4253 4 chr1D.!!$F3 3750
2 TraesCS1A01G241500 chr1B 446623293 446629700 6407 False 1693 2970 86.99850 501 4253 2 chr1B.!!$F1 3752

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
885 906 0.034089 ATGGCTACAGAAGTTGGGCC 60.034 55.000 0.00 0.0 44.59 5.80 F
1958 5849 1.137872 GGAGTGCACCAGTATGAGGAG 59.862 57.143 14.63 0.0 39.69 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2037 5928 1.000359 CCCTTGGGGTGGTTGGATC 60.000 63.158 0.0 0.0 38.25 3.36 R
3319 7226 1.200716 AGCATCACCATGTTTTGAGCG 59.799 47.619 0.0 0.0 31.86 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.389890 TTTCCAGTGCCATATCATTTGC 57.610 40.909 0.00 0.00 0.00 3.68
22 23 3.015675 TCCAGTGCCATATCATTTGCA 57.984 42.857 0.00 0.00 0.00 4.08
23 24 3.568443 TCCAGTGCCATATCATTTGCAT 58.432 40.909 0.00 0.00 35.96 3.96
24 25 3.570975 TCCAGTGCCATATCATTTGCATC 59.429 43.478 0.00 0.00 35.96 3.91
25 26 3.319689 CCAGTGCCATATCATTTGCATCA 59.680 43.478 0.00 0.00 35.96 3.07
26 27 4.202172 CCAGTGCCATATCATTTGCATCAA 60.202 41.667 0.00 0.00 35.96 2.57
27 28 5.510690 CCAGTGCCATATCATTTGCATCAAT 60.511 40.000 0.00 0.00 35.96 2.57
28 29 5.633601 CAGTGCCATATCATTTGCATCAATC 59.366 40.000 0.00 0.00 35.96 2.67
29 30 4.927425 GTGCCATATCATTTGCATCAATCC 59.073 41.667 0.00 0.00 35.96 3.01
30 31 4.589374 TGCCATATCATTTGCATCAATCCA 59.411 37.500 0.00 0.00 0.00 3.41
31 32 5.070580 TGCCATATCATTTGCATCAATCCAA 59.929 36.000 0.00 0.00 0.00 3.53
32 33 5.637810 GCCATATCATTTGCATCAATCCAAG 59.362 40.000 0.00 0.00 0.00 3.61
33 34 6.740401 GCCATATCATTTGCATCAATCCAAGT 60.740 38.462 0.00 0.00 0.00 3.16
34 35 7.214381 CCATATCATTTGCATCAATCCAAGTT 58.786 34.615 0.00 0.00 0.00 2.66
35 36 7.170828 CCATATCATTTGCATCAATCCAAGTTG 59.829 37.037 0.00 0.00 0.00 3.16
36 37 4.247258 TCATTTGCATCAATCCAAGTTGC 58.753 39.130 0.00 0.00 33.46 4.17
37 38 2.747396 TTGCATCAATCCAAGTTGCC 57.253 45.000 0.00 0.00 32.21 4.52
38 39 0.527113 TGCATCAATCCAAGTTGCCG 59.473 50.000 0.00 0.00 32.21 5.69
39 40 0.527565 GCATCAATCCAAGTTGCCGT 59.472 50.000 0.00 0.00 0.00 5.68
40 41 1.067635 GCATCAATCCAAGTTGCCGTT 60.068 47.619 0.00 0.00 0.00 4.44
41 42 2.610232 GCATCAATCCAAGTTGCCGTTT 60.610 45.455 0.00 0.00 0.00 3.60
42 43 3.652274 CATCAATCCAAGTTGCCGTTTT 58.348 40.909 0.00 0.00 0.00 2.43
43 44 3.363341 TCAATCCAAGTTGCCGTTTTC 57.637 42.857 0.00 0.00 0.00 2.29
44 45 2.690497 TCAATCCAAGTTGCCGTTTTCA 59.310 40.909 0.00 0.00 0.00 2.69
45 46 3.131223 TCAATCCAAGTTGCCGTTTTCAA 59.869 39.130 0.00 0.00 0.00 2.69
46 47 2.861462 TCCAAGTTGCCGTTTTCAAG 57.139 45.000 0.00 0.00 0.00 3.02
47 48 2.096248 TCCAAGTTGCCGTTTTCAAGT 58.904 42.857 0.00 0.00 0.00 3.16
48 49 2.494073 TCCAAGTTGCCGTTTTCAAGTT 59.506 40.909 0.00 0.00 37.51 2.66
49 50 3.695060 TCCAAGTTGCCGTTTTCAAGTTA 59.305 39.130 0.00 0.00 35.87 2.24
50 51 3.794564 CCAAGTTGCCGTTTTCAAGTTAC 59.205 43.478 0.00 0.00 35.87 2.50
51 52 3.328237 AGTTGCCGTTTTCAAGTTACG 57.672 42.857 0.00 0.00 35.20 3.18
52 53 1.776897 GTTGCCGTTTTCAAGTTACGC 59.223 47.619 0.00 0.00 34.16 4.42
53 54 0.042013 TGCCGTTTTCAAGTTACGCG 60.042 50.000 3.53 3.53 34.16 6.01
54 55 0.041926 GCCGTTTTCAAGTTACGCGT 60.042 50.000 19.17 19.17 34.16 6.01
55 56 1.192090 GCCGTTTTCAAGTTACGCGTA 59.808 47.619 16.41 16.41 34.16 4.42
56 57 2.348404 GCCGTTTTCAAGTTACGCGTAA 60.348 45.455 26.87 26.87 34.16 3.18
57 58 3.844226 GCCGTTTTCAAGTTACGCGTAAA 60.844 43.478 31.44 15.44 34.16 2.01
58 59 4.270102 CCGTTTTCAAGTTACGCGTAAAA 58.730 39.130 31.44 20.25 34.16 1.52
59 60 4.727655 CCGTTTTCAAGTTACGCGTAAAAA 59.272 37.500 31.44 23.81 34.16 1.94
76 77 3.733443 AAAAATGAGCTCGGCTGTTTT 57.267 38.095 9.64 7.83 39.88 2.43
77 78 2.712057 AAATGAGCTCGGCTGTTTTG 57.288 45.000 9.64 0.00 39.88 2.44
78 79 1.609208 AATGAGCTCGGCTGTTTTGT 58.391 45.000 9.64 0.00 39.88 2.83
79 80 1.609208 ATGAGCTCGGCTGTTTTGTT 58.391 45.000 9.64 0.00 39.88 2.83
80 81 1.388547 TGAGCTCGGCTGTTTTGTTT 58.611 45.000 9.64 0.00 39.88 2.83
81 82 1.065401 TGAGCTCGGCTGTTTTGTTTG 59.935 47.619 9.64 0.00 39.88 2.93
82 83 1.333619 GAGCTCGGCTGTTTTGTTTGA 59.666 47.619 0.00 0.00 39.88 2.69
83 84 1.334869 AGCTCGGCTGTTTTGTTTGAG 59.665 47.619 0.00 0.00 37.57 3.02
84 85 1.333619 GCTCGGCTGTTTTGTTTGAGA 59.666 47.619 0.00 0.00 0.00 3.27
85 86 2.223479 GCTCGGCTGTTTTGTTTGAGAA 60.223 45.455 0.00 0.00 0.00 2.87
86 87 3.733684 GCTCGGCTGTTTTGTTTGAGAAA 60.734 43.478 0.00 0.00 0.00 2.52
87 88 4.420168 CTCGGCTGTTTTGTTTGAGAAAA 58.580 39.130 0.00 0.00 0.00 2.29
88 89 5.004922 TCGGCTGTTTTGTTTGAGAAAAT 57.995 34.783 0.00 0.00 0.00 1.82
89 90 5.415221 TCGGCTGTTTTGTTTGAGAAAATT 58.585 33.333 0.00 0.00 0.00 1.82
90 91 5.518487 TCGGCTGTTTTGTTTGAGAAAATTC 59.482 36.000 0.00 0.00 0.00 2.17
91 92 5.554324 CGGCTGTTTTGTTTGAGAAAATTCG 60.554 40.000 0.00 0.00 0.00 3.34
92 93 5.290885 GGCTGTTTTGTTTGAGAAAATTCGT 59.709 36.000 0.00 0.00 0.00 3.85
93 94 6.402816 GCTGTTTTGTTTGAGAAAATTCGTC 58.597 36.000 0.00 0.00 0.00 4.20
94 95 6.034470 GCTGTTTTGTTTGAGAAAATTCGTCA 59.966 34.615 0.00 0.00 0.00 4.35
95 96 7.254084 GCTGTTTTGTTTGAGAAAATTCGTCAT 60.254 33.333 0.00 0.00 0.00 3.06
96 97 8.472683 TGTTTTGTTTGAGAAAATTCGTCATT 57.527 26.923 0.00 0.00 0.00 2.57
97 98 8.930760 TGTTTTGTTTGAGAAAATTCGTCATTT 58.069 25.926 0.00 0.00 36.57 2.32
98 99 9.753669 GTTTTGTTTGAGAAAATTCGTCATTTT 57.246 25.926 7.50 7.50 46.10 1.82
100 101 9.965748 TTTGTTTGAGAAAATTCGTCATTTTTC 57.034 25.926 8.73 7.66 43.89 2.29
101 102 8.694975 TGTTTGAGAAAATTCGTCATTTTTCA 57.305 26.923 9.88 10.38 43.89 2.69
102 103 9.144747 TGTTTGAGAAAATTCGTCATTTTTCAA 57.855 25.926 16.93 16.93 43.89 2.69
103 104 9.965748 GTTTGAGAAAATTCGTCATTTTTCAAA 57.034 25.926 21.46 21.46 43.89 2.69
111 112 9.458374 AAATTCGTCATTTTTCAAATTACTCGT 57.542 25.926 0.00 0.00 30.09 4.18
112 113 9.458374 AATTCGTCATTTTTCAAATTACTCGTT 57.542 25.926 0.00 0.00 0.00 3.85
114 115 9.932699 TTCGTCATTTTTCAAATTACTCGTTAA 57.067 25.926 0.00 0.00 0.00 2.01
115 116 9.372541 TCGTCATTTTTCAAATTACTCGTTAAC 57.627 29.630 0.00 0.00 0.00 2.01
116 117 8.624028 CGTCATTTTTCAAATTACTCGTTAACC 58.376 33.333 0.00 0.00 0.00 2.85
117 118 8.624028 GTCATTTTTCAAATTACTCGTTAACCG 58.376 33.333 0.00 0.00 38.13 4.44
118 119 8.344098 TCATTTTTCAAATTACTCGTTAACCGT 58.656 29.630 0.00 0.30 37.94 4.83
119 120 9.596677 CATTTTTCAAATTACTCGTTAACCGTA 57.403 29.630 0.00 0.00 37.94 4.02
121 122 9.596677 TTTTTCAAATTACTCGTTAACCGTATG 57.403 29.630 0.00 0.00 37.94 2.39
122 123 8.531622 TTTCAAATTACTCGTTAACCGTATGA 57.468 30.769 0.00 1.29 37.94 2.15
123 124 8.531622 TTCAAATTACTCGTTAACCGTATGAA 57.468 30.769 0.00 6.59 37.94 2.57
124 125 8.531622 TCAAATTACTCGTTAACCGTATGAAA 57.468 30.769 0.00 0.00 37.94 2.69
125 126 9.153721 TCAAATTACTCGTTAACCGTATGAAAT 57.846 29.630 0.00 0.00 37.94 2.17
126 127 9.763465 CAAATTACTCGTTAACCGTATGAAATT 57.237 29.630 0.00 0.00 37.94 1.82
127 128 9.763465 AAATTACTCGTTAACCGTATGAAATTG 57.237 29.630 0.00 0.00 37.94 2.32
128 129 5.789710 ACTCGTTAACCGTATGAAATTGG 57.210 39.130 0.00 0.00 37.94 3.16
129 130 5.481105 ACTCGTTAACCGTATGAAATTGGA 58.519 37.500 0.00 0.00 37.94 3.53
130 131 5.933463 ACTCGTTAACCGTATGAAATTGGAA 59.067 36.000 0.00 0.00 37.94 3.53
131 132 6.427547 ACTCGTTAACCGTATGAAATTGGAAA 59.572 34.615 0.00 0.00 37.94 3.13
132 133 7.041235 ACTCGTTAACCGTATGAAATTGGAAAA 60.041 33.333 0.00 0.00 37.94 2.29
133 134 7.646314 TCGTTAACCGTATGAAATTGGAAAAA 58.354 30.769 0.00 0.00 37.94 1.94
161 162 5.314923 TGTGAAATAAGAGGATTTGCAGC 57.685 39.130 0.00 0.00 0.00 5.25
162 163 4.766373 TGTGAAATAAGAGGATTTGCAGCA 59.234 37.500 0.00 0.00 0.00 4.41
163 164 5.243507 TGTGAAATAAGAGGATTTGCAGCAA 59.756 36.000 2.83 2.83 0.00 3.91
164 165 5.574443 GTGAAATAAGAGGATTTGCAGCAAC 59.426 40.000 7.54 0.00 0.00 4.17
165 166 5.477984 TGAAATAAGAGGATTTGCAGCAACT 59.522 36.000 7.54 1.51 0.00 3.16
166 167 5.990120 AATAAGAGGATTTGCAGCAACTT 57.010 34.783 7.54 10.04 0.00 2.66
167 168 5.990120 ATAAGAGGATTTGCAGCAACTTT 57.010 34.783 7.54 0.00 0.00 2.66
168 169 4.677673 AAGAGGATTTGCAGCAACTTTT 57.322 36.364 7.54 0.73 0.00 2.27
169 170 4.248691 AGAGGATTTGCAGCAACTTTTC 57.751 40.909 7.54 4.87 0.00 2.29
170 171 3.638160 AGAGGATTTGCAGCAACTTTTCA 59.362 39.130 7.54 0.00 0.00 2.69
171 172 4.099881 AGAGGATTTGCAGCAACTTTTCAA 59.900 37.500 7.54 0.00 0.00 2.69
172 173 4.964593 AGGATTTGCAGCAACTTTTCAAT 58.035 34.783 7.54 0.00 0.00 2.57
173 174 4.753107 AGGATTTGCAGCAACTTTTCAATG 59.247 37.500 7.54 0.00 0.00 2.82
174 175 3.948196 TTTGCAGCAACTTTTCAATGC 57.052 38.095 7.54 0.00 40.34 3.56
175 176 1.868469 TGCAGCAACTTTTCAATGCC 58.132 45.000 0.00 0.00 40.93 4.40
176 177 0.785979 GCAGCAACTTTTCAATGCCG 59.214 50.000 0.00 0.00 40.93 5.69
177 178 1.869342 GCAGCAACTTTTCAATGCCGT 60.869 47.619 0.00 0.00 40.93 5.68
178 179 2.606795 GCAGCAACTTTTCAATGCCGTA 60.607 45.455 0.00 0.00 40.93 4.02
179 180 3.836949 CAGCAACTTTTCAATGCCGTAT 58.163 40.909 0.00 0.00 40.93 3.06
180 181 3.853671 CAGCAACTTTTCAATGCCGTATC 59.146 43.478 0.00 0.00 40.93 2.24
181 182 3.505680 AGCAACTTTTCAATGCCGTATCA 59.494 39.130 0.00 0.00 40.93 2.15
182 183 4.158394 AGCAACTTTTCAATGCCGTATCAT 59.842 37.500 0.00 0.00 40.93 2.45
183 184 4.864247 GCAACTTTTCAATGCCGTATCATT 59.136 37.500 0.00 0.00 37.16 2.57
184 185 5.348451 GCAACTTTTCAATGCCGTATCATTT 59.652 36.000 0.00 0.00 34.68 2.32
185 186 6.670452 GCAACTTTTCAATGCCGTATCATTTG 60.670 38.462 0.00 0.00 34.68 2.32
186 187 4.864247 ACTTTTCAATGCCGTATCATTTGC 59.136 37.500 0.00 0.00 34.68 3.68
187 188 3.435105 TTCAATGCCGTATCATTTGCC 57.565 42.857 0.00 0.00 34.68 4.52
188 189 2.653726 TCAATGCCGTATCATTTGCCT 58.346 42.857 0.00 0.00 34.68 4.75
189 190 2.618241 TCAATGCCGTATCATTTGCCTC 59.382 45.455 0.00 0.00 34.68 4.70
190 191 2.346766 ATGCCGTATCATTTGCCTCA 57.653 45.000 0.00 0.00 0.00 3.86
191 192 2.346766 TGCCGTATCATTTGCCTCAT 57.653 45.000 0.00 0.00 0.00 2.90
192 193 2.653726 TGCCGTATCATTTGCCTCATT 58.346 42.857 0.00 0.00 0.00 2.57
193 194 2.618241 TGCCGTATCATTTGCCTCATTC 59.382 45.455 0.00 0.00 0.00 2.67
194 195 2.030805 GCCGTATCATTTGCCTCATTCC 60.031 50.000 0.00 0.00 0.00 3.01
195 196 2.224079 CCGTATCATTTGCCTCATTCCG 59.776 50.000 0.00 0.00 0.00 4.30
196 197 3.130633 CGTATCATTTGCCTCATTCCGA 58.869 45.455 0.00 0.00 0.00 4.55
197 198 3.748048 CGTATCATTTGCCTCATTCCGAT 59.252 43.478 0.00 0.00 0.00 4.18
198 199 4.929211 CGTATCATTTGCCTCATTCCGATA 59.071 41.667 0.00 0.00 0.00 2.92
199 200 5.408299 CGTATCATTTGCCTCATTCCGATAA 59.592 40.000 0.00 0.00 0.00 1.75
200 201 6.073276 CGTATCATTTGCCTCATTCCGATAAA 60.073 38.462 0.00 0.00 0.00 1.40
201 202 5.499139 TCATTTGCCTCATTCCGATAAAC 57.501 39.130 0.00 0.00 0.00 2.01
202 203 4.035091 TCATTTGCCTCATTCCGATAAACG 59.965 41.667 0.00 0.00 42.18 3.60
219 220 7.762166 CGATAAACGGTTTAGAAATAGACTCG 58.238 38.462 17.37 13.76 38.46 4.18
220 221 7.641411 CGATAAACGGTTTAGAAATAGACTCGA 59.359 37.037 17.37 0.00 38.46 4.04
221 222 9.294030 GATAAACGGTTTAGAAATAGACTCGAA 57.706 33.333 17.37 0.00 0.00 3.71
222 223 7.951530 AAACGGTTTAGAAATAGACTCGAAA 57.048 32.000 3.90 0.00 0.00 3.46
223 224 7.951530 AACGGTTTAGAAATAGACTCGAAAA 57.048 32.000 0.00 0.00 0.00 2.29
224 225 8.543862 AACGGTTTAGAAATAGACTCGAAAAT 57.456 30.769 0.00 0.00 0.00 1.82
225 226 7.960793 ACGGTTTAGAAATAGACTCGAAAATG 58.039 34.615 0.00 0.00 0.00 2.32
226 227 6.900299 CGGTTTAGAAATAGACTCGAAAATGC 59.100 38.462 0.00 0.00 0.00 3.56
227 228 6.900299 GGTTTAGAAATAGACTCGAAAATGCG 59.100 38.462 0.00 0.00 0.00 4.73
228 229 7.412672 GGTTTAGAAATAGACTCGAAAATGCGT 60.413 37.037 0.00 0.00 0.00 5.24
229 230 7.591006 TTAGAAATAGACTCGAAAATGCGTT 57.409 32.000 0.00 0.00 0.00 4.84
230 231 6.481954 AGAAATAGACTCGAAAATGCGTTT 57.518 33.333 0.00 0.00 0.00 3.60
231 232 6.534934 AGAAATAGACTCGAAAATGCGTTTC 58.465 36.000 3.96 3.53 42.01 2.78
232 233 5.856126 AATAGACTCGAAAATGCGTTTCA 57.144 34.783 3.96 0.00 45.15 2.69
233 234 6.422776 AATAGACTCGAAAATGCGTTTCAT 57.577 33.333 3.96 0.00 45.15 2.57
234 235 4.070581 AGACTCGAAAATGCGTTTCATG 57.929 40.909 3.96 3.03 45.15 3.07
235 236 3.498397 AGACTCGAAAATGCGTTTCATGT 59.502 39.130 3.96 5.94 45.15 3.21
236 237 4.024048 AGACTCGAAAATGCGTTTCATGTT 60.024 37.500 3.96 0.00 45.15 2.71
237 238 4.606961 ACTCGAAAATGCGTTTCATGTTT 58.393 34.783 3.96 0.00 45.15 2.83
238 239 5.040635 ACTCGAAAATGCGTTTCATGTTTT 58.959 33.333 3.96 0.00 45.15 2.43
239 240 5.518487 ACTCGAAAATGCGTTTCATGTTTTT 59.482 32.000 3.96 0.00 45.15 1.94
262 263 6.576551 TTTGTATGAAGAAAAACGGTTTGC 57.423 33.333 6.92 0.00 0.00 3.68
263 264 4.612943 TGTATGAAGAAAAACGGTTTGCC 58.387 39.130 6.92 2.41 0.00 4.52
264 265 3.810310 ATGAAGAAAAACGGTTTGCCA 57.190 38.095 6.92 0.00 34.09 4.92
265 266 3.594603 TGAAGAAAAACGGTTTGCCAA 57.405 38.095 6.92 0.00 34.09 4.52
266 267 3.926616 TGAAGAAAAACGGTTTGCCAAA 58.073 36.364 6.92 0.00 34.09 3.28
267 268 4.508662 TGAAGAAAAACGGTTTGCCAAAT 58.491 34.783 6.92 0.00 34.09 2.32
268 269 4.938226 TGAAGAAAAACGGTTTGCCAAATT 59.062 33.333 6.92 0.00 34.09 1.82
269 270 4.873768 AGAAAAACGGTTTGCCAAATTG 57.126 36.364 6.92 0.00 34.09 2.32
270 271 4.508662 AGAAAAACGGTTTGCCAAATTGA 58.491 34.783 6.92 0.00 34.09 2.57
271 272 5.122519 AGAAAAACGGTTTGCCAAATTGAT 58.877 33.333 6.92 0.00 34.09 2.57
272 273 5.588246 AGAAAAACGGTTTGCCAAATTGATT 59.412 32.000 6.92 0.00 34.09 2.57
273 274 5.826601 AAAACGGTTTGCCAAATTGATTT 57.173 30.435 6.92 0.00 34.09 2.17
274 275 5.826601 AAACGGTTTGCCAAATTGATTTT 57.173 30.435 5.12 0.00 34.09 1.82
275 276 6.927294 AAACGGTTTGCCAAATTGATTTTA 57.073 29.167 5.12 0.00 34.09 1.52
276 277 6.927294 AACGGTTTGCCAAATTGATTTTAA 57.073 29.167 0.00 0.00 34.09 1.52
277 278 6.927294 ACGGTTTGCCAAATTGATTTTAAA 57.073 29.167 0.00 0.00 34.09 1.52
278 279 6.720343 ACGGTTTGCCAAATTGATTTTAAAC 58.280 32.000 0.00 0.00 31.62 2.01
279 280 6.540551 ACGGTTTGCCAAATTGATTTTAAACT 59.459 30.769 0.00 0.00 32.27 2.66
280 281 6.850317 CGGTTTGCCAAATTGATTTTAAACTG 59.150 34.615 0.00 12.64 32.27 3.16
281 282 7.466590 CGGTTTGCCAAATTGATTTTAAACTGT 60.467 33.333 0.00 0.00 33.23 3.55
282 283 7.643371 GGTTTGCCAAATTGATTTTAAACTGTG 59.357 33.333 0.00 0.00 32.27 3.66
283 284 7.856145 TTGCCAAATTGATTTTAAACTGTGT 57.144 28.000 0.00 0.00 0.00 3.72
284 285 7.856145 TGCCAAATTGATTTTAAACTGTGTT 57.144 28.000 0.00 0.00 0.00 3.32
285 286 7.692088 TGCCAAATTGATTTTAAACTGTGTTG 58.308 30.769 0.00 0.00 0.00 3.33
286 287 7.550551 TGCCAAATTGATTTTAAACTGTGTTGA 59.449 29.630 0.00 0.00 0.00 3.18
287 288 8.558700 GCCAAATTGATTTTAAACTGTGTTGAT 58.441 29.630 0.00 0.00 0.00 2.57
313 314 9.905171 TTTTGTAAAAACTTAAACGTAGGTTGT 57.095 25.926 0.79 0.00 36.25 3.32
314 315 8.892887 TTGTAAAAACTTAAACGTAGGTTGTG 57.107 30.769 0.79 0.00 36.25 3.33
315 316 8.261492 TGTAAAAACTTAAACGTAGGTTGTGA 57.739 30.769 0.79 0.00 36.25 3.58
316 317 8.891720 TGTAAAAACTTAAACGTAGGTTGTGAT 58.108 29.630 0.79 0.00 36.25 3.06
317 318 9.373750 GTAAAAACTTAAACGTAGGTTGTGATC 57.626 33.333 0.79 0.00 36.25 2.92
318 319 6.549912 AAACTTAAACGTAGGTTGTGATCC 57.450 37.500 0.79 0.00 36.25 3.36
319 320 5.217978 ACTTAAACGTAGGTTGTGATCCA 57.782 39.130 0.79 0.00 36.25 3.41
320 321 4.992951 ACTTAAACGTAGGTTGTGATCCAC 59.007 41.667 0.79 0.00 36.25 4.02
321 322 3.478857 AAACGTAGGTTGTGATCCACA 57.521 42.857 0.79 0.00 43.02 4.17
322 323 3.695830 AACGTAGGTTGTGATCCACAT 57.304 42.857 0.00 0.00 44.16 3.21
323 324 2.972625 ACGTAGGTTGTGATCCACATG 58.027 47.619 0.27 0.00 44.16 3.21
324 325 2.301870 ACGTAGGTTGTGATCCACATGT 59.698 45.455 0.00 0.00 44.16 3.21
325 326 2.930040 CGTAGGTTGTGATCCACATGTC 59.070 50.000 0.00 0.00 44.16 3.06
326 327 2.496899 AGGTTGTGATCCACATGTCC 57.503 50.000 0.00 4.92 44.16 4.02
327 328 1.704628 AGGTTGTGATCCACATGTCCA 59.295 47.619 0.00 0.00 44.16 4.02
328 329 2.309755 AGGTTGTGATCCACATGTCCAT 59.690 45.455 0.00 0.00 44.16 3.41
329 330 3.523157 AGGTTGTGATCCACATGTCCATA 59.477 43.478 0.00 0.00 44.16 2.74
330 331 3.879295 GGTTGTGATCCACATGTCCATAG 59.121 47.826 0.00 0.00 44.16 2.23
331 332 3.198409 TGTGATCCACATGTCCATAGC 57.802 47.619 0.00 0.00 39.62 2.97
332 333 2.773661 TGTGATCCACATGTCCATAGCT 59.226 45.455 0.00 0.00 39.62 3.32
333 334 3.200605 TGTGATCCACATGTCCATAGCTT 59.799 43.478 0.00 0.00 39.62 3.74
334 335 4.202441 GTGATCCACATGTCCATAGCTTT 58.798 43.478 0.00 0.00 34.08 3.51
335 336 4.274459 GTGATCCACATGTCCATAGCTTTC 59.726 45.833 0.00 0.00 34.08 2.62
336 337 3.281727 TCCACATGTCCATAGCTTTCC 57.718 47.619 0.00 0.00 0.00 3.13
337 338 2.575735 TCCACATGTCCATAGCTTTCCA 59.424 45.455 0.00 0.00 0.00 3.53
338 339 3.010027 TCCACATGTCCATAGCTTTCCAA 59.990 43.478 0.00 0.00 0.00 3.53
339 340 3.956199 CCACATGTCCATAGCTTTCCAAT 59.044 43.478 0.00 0.00 0.00 3.16
340 341 4.202080 CCACATGTCCATAGCTTTCCAATG 60.202 45.833 0.00 0.00 0.00 2.82
341 342 3.956199 ACATGTCCATAGCTTTCCAATGG 59.044 43.478 6.16 6.16 41.33 3.16
342 343 3.737559 TGTCCATAGCTTTCCAATGGT 57.262 42.857 11.39 0.00 40.88 3.55
343 344 4.853468 TGTCCATAGCTTTCCAATGGTA 57.147 40.909 11.39 1.51 40.88 3.25
344 345 5.387113 TGTCCATAGCTTTCCAATGGTAT 57.613 39.130 11.39 0.00 40.88 2.73
345 346 6.508030 TGTCCATAGCTTTCCAATGGTATA 57.492 37.500 11.39 0.00 40.88 1.47
346 347 7.090319 TGTCCATAGCTTTCCAATGGTATAT 57.910 36.000 11.39 0.00 40.88 0.86
347 348 7.168219 TGTCCATAGCTTTCCAATGGTATATC 58.832 38.462 11.39 1.85 40.88 1.63
348 349 6.313905 GTCCATAGCTTTCCAATGGTATATCG 59.686 42.308 11.39 0.00 40.88 2.92
349 350 5.586243 CCATAGCTTTCCAATGGTATATCGG 59.414 44.000 0.00 0.00 36.26 4.18
350 351 4.974645 AGCTTTCCAATGGTATATCGGA 57.025 40.909 0.00 0.00 0.00 4.55
351 352 5.304686 AGCTTTCCAATGGTATATCGGAA 57.695 39.130 0.00 0.00 33.98 4.30
352 353 5.308825 AGCTTTCCAATGGTATATCGGAAG 58.691 41.667 0.00 0.00 37.09 3.46
354 355 5.179555 GCTTTCCAATGGTATATCGGAAGAC 59.820 44.000 0.00 0.00 46.97 3.01
355 356 4.884668 TCCAATGGTATATCGGAAGACC 57.115 45.455 0.00 0.68 46.97 3.85
356 357 3.581332 TCCAATGGTATATCGGAAGACCC 59.419 47.826 0.00 0.00 46.97 4.46
357 358 3.326588 CCAATGGTATATCGGAAGACCCA 59.673 47.826 0.00 0.00 46.97 4.51
358 359 4.019321 CCAATGGTATATCGGAAGACCCAT 60.019 45.833 0.00 0.00 46.97 4.00
359 360 5.514834 CCAATGGTATATCGGAAGACCCATT 60.515 44.000 8.62 8.62 46.97 3.16
360 361 5.843019 ATGGTATATCGGAAGACCCATTT 57.157 39.130 4.47 0.00 46.97 2.32
361 362 4.968259 TGGTATATCGGAAGACCCATTTG 58.032 43.478 4.47 0.00 46.97 2.32
362 363 4.202419 TGGTATATCGGAAGACCCATTTGG 60.202 45.833 4.47 0.00 46.97 3.28
363 364 4.041198 GGTATATCGGAAGACCCATTTGGA 59.959 45.833 0.00 0.00 46.97 3.53
364 365 2.420058 ATCGGAAGACCCATTTGGAC 57.580 50.000 0.00 0.00 46.97 4.02
365 366 1.060729 TCGGAAGACCCATTTGGACA 58.939 50.000 0.00 0.00 38.00 4.02
366 367 1.422024 TCGGAAGACCCATTTGGACAA 59.578 47.619 0.00 0.00 38.00 3.18
367 368 2.041081 TCGGAAGACCCATTTGGACAAT 59.959 45.455 0.00 0.00 38.00 2.71
368 369 2.164219 CGGAAGACCCATTTGGACAATG 59.836 50.000 0.00 0.00 37.39 2.82
369 370 3.165071 GGAAGACCCATTTGGACAATGT 58.835 45.455 0.00 0.00 37.39 2.71
370 371 3.578282 GGAAGACCCATTTGGACAATGTT 59.422 43.478 0.00 0.00 37.39 2.71
371 372 4.321974 GGAAGACCCATTTGGACAATGTTC 60.322 45.833 0.00 0.00 37.39 3.18
372 373 2.819608 AGACCCATTTGGACAATGTTCG 59.180 45.455 0.00 0.00 37.39 3.95
373 374 1.272212 ACCCATTTGGACAATGTTCGC 59.728 47.619 0.00 0.00 37.39 4.70
374 375 1.616620 CCATTTGGACAATGTTCGCG 58.383 50.000 0.00 0.00 37.39 5.87
375 376 1.616620 CATTTGGACAATGTTCGCGG 58.383 50.000 6.13 0.00 0.00 6.46
376 377 1.198867 CATTTGGACAATGTTCGCGGA 59.801 47.619 6.13 0.00 0.00 5.54
377 378 1.309950 TTTGGACAATGTTCGCGGAA 58.690 45.000 6.13 0.00 0.00 4.30
378 379 0.871722 TTGGACAATGTTCGCGGAAG 59.128 50.000 6.13 0.00 0.00 3.46
379 380 0.250124 TGGACAATGTTCGCGGAAGT 60.250 50.000 6.13 0.00 0.00 3.01
380 381 0.872388 GGACAATGTTCGCGGAAGTT 59.128 50.000 6.13 0.00 0.00 2.66
381 382 1.136057 GGACAATGTTCGCGGAAGTTC 60.136 52.381 6.13 0.00 0.00 3.01
382 383 1.529438 GACAATGTTCGCGGAAGTTCA 59.471 47.619 6.13 0.00 0.00 3.18
383 384 1.944024 ACAATGTTCGCGGAAGTTCAA 59.056 42.857 6.13 0.00 0.00 2.69
384 385 2.286772 ACAATGTTCGCGGAAGTTCAAC 60.287 45.455 6.13 1.38 0.00 3.18
385 386 0.872388 ATGTTCGCGGAAGTTCAACC 59.128 50.000 6.13 0.00 0.00 3.77
386 387 0.179067 TGTTCGCGGAAGTTCAACCT 60.179 50.000 6.13 0.00 0.00 3.50
387 388 0.511653 GTTCGCGGAAGTTCAACCTC 59.488 55.000 6.13 0.00 0.00 3.85
388 389 0.391597 TTCGCGGAAGTTCAACCTCT 59.608 50.000 6.13 0.00 0.00 3.69
389 390 0.391597 TCGCGGAAGTTCAACCTCTT 59.608 50.000 6.13 0.00 0.00 2.85
390 391 0.790814 CGCGGAAGTTCAACCTCTTC 59.209 55.000 5.01 0.00 39.21 2.87
391 392 1.605712 CGCGGAAGTTCAACCTCTTCT 60.606 52.381 5.01 0.00 39.67 2.85
392 393 2.495084 GCGGAAGTTCAACCTCTTCTT 58.505 47.619 5.01 0.00 39.67 2.52
393 394 2.224314 GCGGAAGTTCAACCTCTTCTTG 59.776 50.000 5.01 0.00 39.67 3.02
394 395 2.808543 CGGAAGTTCAACCTCTTCTTGG 59.191 50.000 5.01 0.00 39.67 3.61
395 396 3.149981 GGAAGTTCAACCTCTTCTTGGG 58.850 50.000 5.01 0.00 39.67 4.12
396 397 3.435169 GGAAGTTCAACCTCTTCTTGGGT 60.435 47.826 5.01 0.00 39.67 4.51
397 398 3.214696 AGTTCAACCTCTTCTTGGGTG 57.785 47.619 0.00 0.00 43.31 4.61
401 402 3.214696 CAACCTCTTCTTGGGTGAAGT 57.785 47.619 0.00 0.00 44.65 3.01
402 403 3.555966 CAACCTCTTCTTGGGTGAAGTT 58.444 45.455 0.00 0.00 44.65 2.66
403 404 3.214696 ACCTCTTCTTGGGTGAAGTTG 57.785 47.619 0.00 0.00 42.76 3.16
404 405 2.777692 ACCTCTTCTTGGGTGAAGTTGA 59.222 45.455 0.00 0.00 42.76 3.18
405 406 3.202151 ACCTCTTCTTGGGTGAAGTTGAA 59.798 43.478 0.00 0.00 42.76 2.69
406 407 3.565902 CCTCTTCTTGGGTGAAGTTGAAC 59.434 47.826 0.00 0.00 42.76 3.18
407 408 4.455606 CTCTTCTTGGGTGAAGTTGAACT 58.544 43.478 0.00 0.00 42.76 3.01
408 409 5.454755 CCTCTTCTTGGGTGAAGTTGAACTA 60.455 44.000 0.00 0.00 42.76 2.24
409 410 5.365619 TCTTCTTGGGTGAAGTTGAACTAC 58.634 41.667 0.00 0.00 42.76 2.73
410 411 5.130477 TCTTCTTGGGTGAAGTTGAACTACT 59.870 40.000 0.00 0.00 42.76 2.57
411 412 6.325545 TCTTCTTGGGTGAAGTTGAACTACTA 59.674 38.462 0.00 0.00 42.76 1.82
412 413 5.850614 TCTTGGGTGAAGTTGAACTACTAC 58.149 41.667 0.00 0.00 32.90 2.73
413 414 5.601313 TCTTGGGTGAAGTTGAACTACTACT 59.399 40.000 0.00 0.00 36.26 2.57
414 415 5.209818 TGGGTGAAGTTGAACTACTACTG 57.790 43.478 0.00 0.00 35.07 2.74
415 416 3.995048 GGGTGAAGTTGAACTACTACTGC 59.005 47.826 0.00 0.00 35.07 4.40
416 417 4.262506 GGGTGAAGTTGAACTACTACTGCT 60.263 45.833 0.00 0.00 35.07 4.24
417 418 4.686554 GGTGAAGTTGAACTACTACTGCTG 59.313 45.833 0.00 0.00 35.07 4.41
418 419 5.290386 GTGAAGTTGAACTACTACTGCTGT 58.710 41.667 0.00 0.66 35.07 4.40
419 420 5.175856 GTGAAGTTGAACTACTACTGCTGTG 59.824 44.000 6.48 0.00 35.07 3.66
420 421 5.068591 TGAAGTTGAACTACTACTGCTGTGA 59.931 40.000 6.48 0.00 35.07 3.58
421 422 4.872664 AGTTGAACTACTACTGCTGTGAC 58.127 43.478 6.48 0.00 33.75 3.67
422 423 3.554259 TGAACTACTACTGCTGTGACG 57.446 47.619 6.48 0.00 0.00 4.35
423 424 2.228103 TGAACTACTACTGCTGTGACGG 59.772 50.000 6.48 0.00 0.00 4.79
424 425 1.174783 ACTACTACTGCTGTGACGGG 58.825 55.000 6.48 0.00 0.00 5.28
425 426 1.174783 CTACTACTGCTGTGACGGGT 58.825 55.000 6.48 0.94 0.00 5.28
426 427 1.132643 CTACTACTGCTGTGACGGGTC 59.867 57.143 6.48 0.00 0.00 4.46
427 428 1.154016 CTACTGCTGTGACGGGTCG 60.154 63.158 6.48 0.00 0.00 4.79
428 429 2.543687 CTACTGCTGTGACGGGTCGG 62.544 65.000 6.48 0.00 0.00 4.79
429 430 4.742201 CTGCTGTGACGGGTCGGG 62.742 72.222 0.00 0.00 0.00 5.14
431 432 3.376078 GCTGTGACGGGTCGGGTA 61.376 66.667 0.00 0.00 0.00 3.69
432 433 2.882876 CTGTGACGGGTCGGGTAG 59.117 66.667 0.00 0.00 0.00 3.18
433 434 1.975407 CTGTGACGGGTCGGGTAGT 60.975 63.158 0.00 0.00 0.00 2.73
434 435 1.530013 CTGTGACGGGTCGGGTAGTT 61.530 60.000 0.00 0.00 0.00 2.24
435 436 0.251121 TGTGACGGGTCGGGTAGTTA 60.251 55.000 0.00 0.00 0.00 2.24
436 437 1.106285 GTGACGGGTCGGGTAGTTAT 58.894 55.000 0.00 0.00 0.00 1.89
437 438 1.066152 GTGACGGGTCGGGTAGTTATC 59.934 57.143 0.00 0.00 0.00 1.75
438 439 1.340893 TGACGGGTCGGGTAGTTATCA 60.341 52.381 0.00 0.00 0.00 2.15
439 440 1.959282 GACGGGTCGGGTAGTTATCAT 59.041 52.381 0.00 0.00 0.00 2.45
440 441 3.149196 GACGGGTCGGGTAGTTATCATA 58.851 50.000 0.00 0.00 0.00 2.15
441 442 3.565307 ACGGGTCGGGTAGTTATCATAA 58.435 45.455 0.00 0.00 0.00 1.90
442 443 4.154942 ACGGGTCGGGTAGTTATCATAAT 58.845 43.478 0.00 0.00 0.00 1.28
443 444 5.324409 ACGGGTCGGGTAGTTATCATAATA 58.676 41.667 0.00 0.00 0.00 0.98
444 445 5.954150 ACGGGTCGGGTAGTTATCATAATAT 59.046 40.000 0.00 0.00 0.00 1.28
445 446 6.438425 ACGGGTCGGGTAGTTATCATAATATT 59.562 38.462 0.00 0.00 0.00 1.28
446 447 7.615365 ACGGGTCGGGTAGTTATCATAATATTA 59.385 37.037 0.00 0.00 0.00 0.98
447 448 8.636213 CGGGTCGGGTAGTTATCATAATATTAT 58.364 37.037 1.91 1.91 0.00 1.28
514 515 4.607239 TGGGTTAGTACTCCTTAGTCTGG 58.393 47.826 0.00 0.00 37.15 3.86
642 644 9.239551 AGGTTAGTTAAGTTTATGCCCTAAAAG 57.760 33.333 0.00 0.00 31.22 2.27
643 645 9.234827 GGTTAGTTAAGTTTATGCCCTAAAAGA 57.765 33.333 0.00 0.00 31.22 2.52
699 703 7.022979 GCATGGTTGGAAATTAAGCATTTTTC 58.977 34.615 2.17 0.00 42.44 2.29
749 762 2.206750 TCTGAGTAACGGTTGCAACAC 58.793 47.619 29.55 19.00 0.00 3.32
769 782 9.674208 GCAACACGATCATTTTAACATATTTTG 57.326 29.630 0.00 0.00 0.00 2.44
820 833 4.098960 ACGGACTGAAAACAGAGTGAACTA 59.901 41.667 0.00 0.00 0.00 2.24
832 852 6.540995 ACAGAGTGAACTAGACCTACTAACA 58.459 40.000 0.00 0.00 0.00 2.41
835 855 7.337184 CAGAGTGAACTAGACCTACTAACATGA 59.663 40.741 0.00 0.00 0.00 3.07
853 873 1.429148 GAAATACTGACCAGCGCCCG 61.429 60.000 2.29 0.00 0.00 6.13
885 906 0.034089 ATGGCTACAGAAGTTGGGCC 60.034 55.000 0.00 0.00 44.59 5.80
908 929 5.154222 CGAAGCCCAACAAATAAAGAGAAC 58.846 41.667 0.00 0.00 0.00 3.01
909 930 5.278266 CGAAGCCCAACAAATAAAGAGAACA 60.278 40.000 0.00 0.00 0.00 3.18
933 954 4.296056 AGAGGGATTTAATACTGGACCGT 58.704 43.478 0.00 0.00 0.00 4.83
1031 1524 8.613613 TGCGATTGTGTAAATAAATGTTCATC 57.386 30.769 0.00 0.00 0.00 2.92
1093 1586 8.766994 AATTGATTTAACTGCCCATAGTATGT 57.233 30.769 9.28 0.00 0.00 2.29
1229 3775 9.729281 TGATTAATTATTATACGGGGAAGGTTC 57.271 33.333 0.00 0.00 0.00 3.62
1232 3778 5.458041 TTATTATACGGGGAAGGTTCGAG 57.542 43.478 0.00 0.00 0.00 4.04
1319 3866 8.561738 TTCACATAATTCTGTCTTTAACCTCC 57.438 34.615 0.00 0.00 0.00 4.30
1438 3985 5.827797 CCTAGCCTAAATGATTTACTTGCCA 59.172 40.000 0.00 0.00 0.00 4.92
1446 3993 9.941664 CTAAATGATTTACTTGCCACTAATGAG 57.058 33.333 0.00 0.00 0.00 2.90
1636 4472 2.628178 TCGTGCATAATAGTCCCTCCAG 59.372 50.000 0.00 0.00 0.00 3.86
1683 4519 5.545063 TTAGGACGATGATCAAGGCATAA 57.455 39.130 9.51 9.51 0.00 1.90
1684 4520 4.422073 AGGACGATGATCAAGGCATAAA 57.578 40.909 0.00 0.00 0.00 1.40
1685 4521 4.780815 AGGACGATGATCAAGGCATAAAA 58.219 39.130 0.00 0.00 0.00 1.52
1686 4522 5.380043 AGGACGATGATCAAGGCATAAAAT 58.620 37.500 0.00 0.00 0.00 1.82
1687 4523 5.829924 AGGACGATGATCAAGGCATAAAATT 59.170 36.000 0.00 0.00 0.00 1.82
1688 4524 6.998074 AGGACGATGATCAAGGCATAAAATTA 59.002 34.615 0.00 0.00 0.00 1.40
1689 4525 7.667219 AGGACGATGATCAAGGCATAAAATTAT 59.333 33.333 0.00 0.00 0.00 1.28
1690 4526 8.946085 GGACGATGATCAAGGCATAAAATTATA 58.054 33.333 0.00 0.00 0.00 0.98
1691 4527 9.760660 GACGATGATCAAGGCATAAAATTATAC 57.239 33.333 0.00 0.00 0.00 1.47
1692 4528 9.283768 ACGATGATCAAGGCATAAAATTATACA 57.716 29.630 0.00 0.00 0.00 2.29
1724 4582 8.786826 ACCTTCGTTAAATCATTGATTAGTGA 57.213 30.769 12.15 6.02 31.46 3.41
1827 4691 6.054295 AGATACATGCAATCAAAGGAGAGAC 58.946 40.000 10.38 0.00 0.00 3.36
1833 4697 4.516698 TGCAATCAAAGGAGAGACACTTTC 59.483 41.667 0.00 0.00 34.89 2.62
1845 4709 6.871492 GGAGAGACACTTTCCTTTTTCTAGAG 59.129 42.308 0.00 0.00 32.73 2.43
1943 5794 4.694339 CTTATAAAGGAACGGAGGGAGTG 58.306 47.826 0.00 0.00 0.00 3.51
1946 5797 2.047179 GGAACGGAGGGAGTGCAC 60.047 66.667 9.40 9.40 0.00 4.57
1947 5798 2.047179 GAACGGAGGGAGTGCACC 60.047 66.667 14.63 4.90 0.00 5.01
1958 5849 1.137872 GGAGTGCACCAGTATGAGGAG 59.862 57.143 14.63 0.00 39.69 3.69
2035 5926 3.254617 GAAACCCCCTCCCCGTGT 61.255 66.667 0.00 0.00 0.00 4.49
2036 5927 3.254617 AAACCCCCTCCCCGTGTC 61.255 66.667 0.00 0.00 0.00 3.67
2054 5945 1.378514 CGATCCAACCACCCCAAGG 60.379 63.158 0.00 0.00 40.04 3.61
2261 6158 3.916392 GACGAGTGGCACGACCCAG 62.916 68.421 12.71 3.96 37.83 4.45
2444 6341 1.726265 GTCCTCGATTCCGTACGCT 59.274 57.895 10.49 0.00 37.05 5.07
2474 6371 1.878656 CGCCGTCCTCACTTCCTTCT 61.879 60.000 0.00 0.00 0.00 2.85
2475 6372 0.321996 GCCGTCCTCACTTCCTTCTT 59.678 55.000 0.00 0.00 0.00 2.52
2476 6373 1.270893 GCCGTCCTCACTTCCTTCTTT 60.271 52.381 0.00 0.00 0.00 2.52
2477 6374 2.689646 CCGTCCTCACTTCCTTCTTTC 58.310 52.381 0.00 0.00 0.00 2.62
2478 6375 2.613223 CCGTCCTCACTTCCTTCTTTCC 60.613 54.545 0.00 0.00 0.00 3.13
2505 6402 6.793680 CACGCATGTATGTTATGCTTTATCAG 59.206 38.462 8.15 0.00 46.62 2.90
2523 6420 3.003478 CAAGCGCCGACCGAATAC 58.997 61.111 2.29 0.00 40.02 1.89
2726 6623 2.567049 CGAGGTCGTTCGGCTTCT 59.433 61.111 7.27 0.00 36.95 2.85
2848 6745 4.187056 GGCGAGGAGAAACCGAAG 57.813 61.111 0.00 0.00 44.74 3.79
2985 6882 4.588951 TGCCTTCATAATCATCGACTAGGT 59.411 41.667 0.00 0.00 0.00 3.08
2986 6883 4.926238 GCCTTCATAATCATCGACTAGGTG 59.074 45.833 0.00 0.00 0.00 4.00
3124 7027 3.390135 TGTCTTCCATGTTTCGTGTCTC 58.610 45.455 0.00 0.00 0.00 3.36
3147 7050 1.065709 GTCTAATCTTGTTCGGCCCCA 60.066 52.381 0.00 0.00 0.00 4.96
3257 7164 7.284034 ACCTGAAAGCCATATTATTGAACTGAG 59.716 37.037 0.00 0.00 0.00 3.35
3266 7173 9.603921 CCATATTATTGAACTGAGCCAAATTTT 57.396 29.630 0.00 0.00 0.00 1.82
3319 7226 3.917985 CCACCAAGCGTTTAAATAACAGC 59.082 43.478 0.00 0.00 0.00 4.40
3354 7261 4.382685 GGTGATGCTACCTAGTGCAAAGTA 60.383 45.833 6.44 0.00 42.74 2.24
3618 7537 2.025887 CCTTTATCTCTGCAACCTGGGT 60.026 50.000 0.00 0.00 0.00 4.51
3619 7538 2.787473 TTATCTCTGCAACCTGGGTG 57.213 50.000 7.56 7.56 0.00 4.61
3620 7539 0.253044 TATCTCTGCAACCTGGGTGC 59.747 55.000 29.46 29.46 0.00 5.01
3621 7540 1.782201 ATCTCTGCAACCTGGGTGCA 61.782 55.000 35.07 35.07 37.04 4.57
3622 7541 1.529010 CTCTGCAACCTGGGTGCAA 60.529 57.895 36.25 25.44 38.15 4.08
3623 7542 1.799258 CTCTGCAACCTGGGTGCAAC 61.799 60.000 36.25 10.78 38.15 4.17
3778 7699 0.389296 CCACGGTGATCACGCACTAA 60.389 55.000 19.33 0.00 38.78 2.24
3971 7911 5.624081 GCATGTAGAAATTGCTCAATGATCG 59.376 40.000 11.00 0.00 33.61 3.69
4027 8880 0.965866 ATCCTTCGACGGTCAGCAGA 60.966 55.000 7.94 0.00 0.00 4.26
4036 8889 2.675519 GGTCAGCAGAGCGATTCAG 58.324 57.895 0.00 0.00 31.89 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.768215 TGCAAATGATATGGCACTGGAAA 59.232 39.130 0.00 0.00 0.00 3.13
2 3 3.015675 TGCAAATGATATGGCACTGGA 57.984 42.857 0.00 0.00 0.00 3.86
4 5 4.577834 TGATGCAAATGATATGGCACTG 57.422 40.909 0.00 0.00 39.34 3.66
5 6 5.279306 GGATTGATGCAAATGATATGGCACT 60.279 40.000 0.00 0.00 39.34 4.40
8 9 5.142061 TGGATTGATGCAAATGATATGGC 57.858 39.130 0.00 0.00 0.00 4.40
9 10 6.755206 ACTTGGATTGATGCAAATGATATGG 58.245 36.000 0.00 0.00 37.67 2.74
10 11 7.307160 GCAACTTGGATTGATGCAAATGATATG 60.307 37.037 11.96 3.03 37.67 1.78
11 12 6.704493 GCAACTTGGATTGATGCAAATGATAT 59.296 34.615 11.96 0.00 37.67 1.63
12 13 6.044046 GCAACTTGGATTGATGCAAATGATA 58.956 36.000 11.96 0.00 37.67 2.15
14 15 4.247258 GCAACTTGGATTGATGCAAATGA 58.753 39.130 11.96 0.00 37.67 2.57
15 16 3.372822 GGCAACTTGGATTGATGCAAATG 59.627 43.478 0.00 3.67 37.67 2.32
16 17 3.602483 GGCAACTTGGATTGATGCAAAT 58.398 40.909 0.00 0.00 37.67 2.32
17 18 2.609984 CGGCAACTTGGATTGATGCAAA 60.610 45.455 0.00 0.00 37.67 3.68
18 19 1.067706 CGGCAACTTGGATTGATGCAA 60.068 47.619 0.00 0.00 38.73 4.08
19 20 0.527113 CGGCAACTTGGATTGATGCA 59.473 50.000 0.00 0.00 38.73 3.96
20 21 0.527565 ACGGCAACTTGGATTGATGC 59.472 50.000 0.00 0.00 36.31 3.91
21 22 3.302365 AAACGGCAACTTGGATTGATG 57.698 42.857 0.00 0.00 0.00 3.07
22 23 3.320541 TGAAAACGGCAACTTGGATTGAT 59.679 39.130 0.00 0.00 0.00 2.57
23 24 2.690497 TGAAAACGGCAACTTGGATTGA 59.310 40.909 0.00 0.00 0.00 2.57
24 25 3.090952 TGAAAACGGCAACTTGGATTG 57.909 42.857 0.00 0.00 0.00 2.67
25 26 3.132111 ACTTGAAAACGGCAACTTGGATT 59.868 39.130 0.00 0.00 0.00 3.01
26 27 2.693074 ACTTGAAAACGGCAACTTGGAT 59.307 40.909 0.00 0.00 0.00 3.41
27 28 2.096248 ACTTGAAAACGGCAACTTGGA 58.904 42.857 0.00 0.00 0.00 3.53
28 29 2.577449 ACTTGAAAACGGCAACTTGG 57.423 45.000 0.00 0.00 0.00 3.61
29 30 3.480668 CGTAACTTGAAAACGGCAACTTG 59.519 43.478 0.00 0.00 33.13 3.16
30 31 3.687200 CGTAACTTGAAAACGGCAACTT 58.313 40.909 0.00 0.00 33.13 2.66
31 32 2.540157 GCGTAACTTGAAAACGGCAACT 60.540 45.455 0.00 0.00 37.12 3.16
32 33 1.776897 GCGTAACTTGAAAACGGCAAC 59.223 47.619 0.00 0.00 37.12 4.17
33 34 1.595003 CGCGTAACTTGAAAACGGCAA 60.595 47.619 0.00 0.00 37.12 4.52
34 35 0.042013 CGCGTAACTTGAAAACGGCA 60.042 50.000 0.00 0.00 37.12 5.69
35 36 0.041926 ACGCGTAACTTGAAAACGGC 60.042 50.000 11.67 0.00 37.12 5.68
36 37 3.502256 TTACGCGTAACTTGAAAACGG 57.498 42.857 26.87 0.00 37.12 4.44
37 38 5.830130 TTTTTACGCGTAACTTGAAAACG 57.170 34.783 30.01 0.00 39.55 3.60
56 57 3.181476 ACAAAACAGCCGAGCTCATTTTT 60.181 39.130 15.40 8.01 36.40 1.94
57 58 2.362077 ACAAAACAGCCGAGCTCATTTT 59.638 40.909 15.40 8.81 36.40 1.82
58 59 1.956477 ACAAAACAGCCGAGCTCATTT 59.044 42.857 15.40 3.04 36.40 2.32
59 60 1.609208 ACAAAACAGCCGAGCTCATT 58.391 45.000 15.40 0.00 36.40 2.57
60 61 1.609208 AACAAAACAGCCGAGCTCAT 58.391 45.000 15.40 0.00 36.40 2.90
61 62 1.065401 CAAACAAAACAGCCGAGCTCA 59.935 47.619 15.40 0.00 36.40 4.26
62 63 1.333619 TCAAACAAAACAGCCGAGCTC 59.666 47.619 2.73 2.73 36.40 4.09
63 64 1.334869 CTCAAACAAAACAGCCGAGCT 59.665 47.619 0.00 0.00 40.77 4.09
64 65 1.333619 TCTCAAACAAAACAGCCGAGC 59.666 47.619 0.00 0.00 0.00 5.03
65 66 3.691049 TTCTCAAACAAAACAGCCGAG 57.309 42.857 0.00 0.00 0.00 4.63
66 67 4.442375 TTTTCTCAAACAAAACAGCCGA 57.558 36.364 0.00 0.00 0.00 5.54
67 68 5.554324 CGAATTTTCTCAAACAAAACAGCCG 60.554 40.000 0.00 0.00 0.00 5.52
68 69 5.290885 ACGAATTTTCTCAAACAAAACAGCC 59.709 36.000 0.00 0.00 0.00 4.85
69 70 6.034470 TGACGAATTTTCTCAAACAAAACAGC 59.966 34.615 0.00 0.00 0.00 4.40
70 71 7.504922 TGACGAATTTTCTCAAACAAAACAG 57.495 32.000 0.00 0.00 0.00 3.16
71 72 8.472683 AATGACGAATTTTCTCAAACAAAACA 57.527 26.923 0.00 0.00 0.00 2.83
72 73 9.753669 AAAATGACGAATTTTCTCAAACAAAAC 57.246 25.926 7.46 0.00 43.57 2.43
74 75 9.965748 GAAAAATGACGAATTTTCTCAAACAAA 57.034 25.926 11.92 0.00 45.73 2.83
75 76 9.144747 TGAAAAATGACGAATTTTCTCAAACAA 57.855 25.926 11.92 0.00 45.73 2.83
76 77 8.694975 TGAAAAATGACGAATTTTCTCAAACA 57.305 26.923 11.92 0.00 45.73 2.83
77 78 9.965748 TTTGAAAAATGACGAATTTTCTCAAAC 57.034 25.926 23.43 12.46 45.73 2.93
85 86 9.458374 ACGAGTAATTTGAAAAATGACGAATTT 57.542 25.926 0.00 0.00 40.32 1.82
86 87 9.458374 AACGAGTAATTTGAAAAATGACGAATT 57.542 25.926 0.00 0.00 35.28 2.17
88 89 9.932699 TTAACGAGTAATTTGAAAAATGACGAA 57.067 25.926 0.00 0.00 0.00 3.85
89 90 9.372541 GTTAACGAGTAATTTGAAAAATGACGA 57.627 29.630 0.00 0.00 0.00 4.20
90 91 8.624028 GGTTAACGAGTAATTTGAAAAATGACG 58.376 33.333 0.00 0.00 0.00 4.35
135 136 8.139989 GCTGCAAATCCTCTTATTTCACATATT 58.860 33.333 0.00 0.00 0.00 1.28
136 137 7.286087 TGCTGCAAATCCTCTTATTTCACATAT 59.714 33.333 0.00 0.00 0.00 1.78
137 138 6.602803 TGCTGCAAATCCTCTTATTTCACATA 59.397 34.615 0.00 0.00 0.00 2.29
138 139 5.419788 TGCTGCAAATCCTCTTATTTCACAT 59.580 36.000 0.00 0.00 0.00 3.21
139 140 4.766373 TGCTGCAAATCCTCTTATTTCACA 59.234 37.500 0.00 0.00 0.00 3.58
140 141 5.314923 TGCTGCAAATCCTCTTATTTCAC 57.685 39.130 0.00 0.00 0.00 3.18
141 142 5.477984 AGTTGCTGCAAATCCTCTTATTTCA 59.522 36.000 17.80 0.00 0.00 2.69
142 143 5.958955 AGTTGCTGCAAATCCTCTTATTTC 58.041 37.500 17.80 0.00 0.00 2.17
143 144 5.990120 AGTTGCTGCAAATCCTCTTATTT 57.010 34.783 17.80 0.00 0.00 1.40
144 145 5.990120 AAGTTGCTGCAAATCCTCTTATT 57.010 34.783 17.80 0.00 0.00 1.40
145 146 5.990120 AAAGTTGCTGCAAATCCTCTTAT 57.010 34.783 17.80 0.00 0.00 1.73
146 147 5.301551 TGAAAAGTTGCTGCAAATCCTCTTA 59.698 36.000 17.80 0.00 0.00 2.10
147 148 4.099881 TGAAAAGTTGCTGCAAATCCTCTT 59.900 37.500 17.80 12.50 0.00 2.85
148 149 3.638160 TGAAAAGTTGCTGCAAATCCTCT 59.362 39.130 17.80 6.64 0.00 3.69
149 150 3.981211 TGAAAAGTTGCTGCAAATCCTC 58.019 40.909 17.80 15.31 0.00 3.71
150 151 4.405116 TTGAAAAGTTGCTGCAAATCCT 57.595 36.364 17.80 7.42 0.00 3.24
151 152 4.612033 GCATTGAAAAGTTGCTGCAAATCC 60.612 41.667 17.80 9.38 29.52 3.01
152 153 4.460505 GCATTGAAAAGTTGCTGCAAATC 58.539 39.130 17.80 13.03 29.52 2.17
153 154 3.251487 GGCATTGAAAAGTTGCTGCAAAT 59.749 39.130 17.80 13.79 32.61 2.32
154 155 2.613133 GGCATTGAAAAGTTGCTGCAAA 59.387 40.909 17.80 0.00 32.61 3.68
155 156 2.211806 GGCATTGAAAAGTTGCTGCAA 58.788 42.857 11.69 11.69 32.61 4.08
156 157 1.868469 GGCATTGAAAAGTTGCTGCA 58.132 45.000 0.00 0.00 32.61 4.41
157 158 0.785979 CGGCATTGAAAAGTTGCTGC 59.214 50.000 0.00 0.00 32.18 5.25
158 159 2.138596 ACGGCATTGAAAAGTTGCTG 57.861 45.000 1.62 1.62 42.42 4.41
159 160 3.505680 TGATACGGCATTGAAAAGTTGCT 59.494 39.130 0.00 0.00 32.61 3.91
160 161 3.832276 TGATACGGCATTGAAAAGTTGC 58.168 40.909 0.00 0.00 31.26 4.17
161 162 6.670452 GCAAATGATACGGCATTGAAAAGTTG 60.670 38.462 0.00 0.00 38.42 3.16
162 163 5.348451 GCAAATGATACGGCATTGAAAAGTT 59.652 36.000 0.00 0.00 38.42 2.66
163 164 4.864247 GCAAATGATACGGCATTGAAAAGT 59.136 37.500 0.00 0.00 38.42 2.66
164 165 4.268405 GGCAAATGATACGGCATTGAAAAG 59.732 41.667 0.00 0.00 38.42 2.27
165 166 4.081752 AGGCAAATGATACGGCATTGAAAA 60.082 37.500 0.00 0.00 38.42 2.29
166 167 3.446873 AGGCAAATGATACGGCATTGAAA 59.553 39.130 0.00 0.00 38.42 2.69
167 168 3.023119 AGGCAAATGATACGGCATTGAA 58.977 40.909 0.00 0.00 38.42 2.69
168 169 2.618241 GAGGCAAATGATACGGCATTGA 59.382 45.455 0.00 0.00 38.42 2.57
169 170 2.358582 TGAGGCAAATGATACGGCATTG 59.641 45.455 0.00 0.00 38.42 2.82
170 171 2.653726 TGAGGCAAATGATACGGCATT 58.346 42.857 0.00 0.00 40.04 3.56
171 172 2.346766 TGAGGCAAATGATACGGCAT 57.653 45.000 0.00 0.00 0.00 4.40
172 173 2.346766 ATGAGGCAAATGATACGGCA 57.653 45.000 0.00 0.00 0.00 5.69
173 174 2.030805 GGAATGAGGCAAATGATACGGC 60.031 50.000 0.00 0.00 0.00 5.68
174 175 2.224079 CGGAATGAGGCAAATGATACGG 59.776 50.000 0.00 0.00 0.00 4.02
175 176 3.130633 TCGGAATGAGGCAAATGATACG 58.869 45.455 0.00 0.00 0.00 3.06
176 177 6.801539 TTATCGGAATGAGGCAAATGATAC 57.198 37.500 0.00 0.00 0.00 2.24
177 178 6.073276 CGTTTATCGGAATGAGGCAAATGATA 60.073 38.462 0.00 0.00 35.71 2.15
178 179 5.277974 CGTTTATCGGAATGAGGCAAATGAT 60.278 40.000 0.00 0.00 35.71 2.45
179 180 4.035091 CGTTTATCGGAATGAGGCAAATGA 59.965 41.667 0.00 0.00 35.71 2.57
180 181 4.282068 CGTTTATCGGAATGAGGCAAATG 58.718 43.478 0.00 0.00 35.71 2.32
181 182 4.552166 CGTTTATCGGAATGAGGCAAAT 57.448 40.909 0.00 0.00 35.71 2.32
194 195 7.641411 TCGAGTCTATTTCTAAACCGTTTATCG 59.359 37.037 4.19 7.60 39.52 2.92
195 196 8.847444 TCGAGTCTATTTCTAAACCGTTTATC 57.153 34.615 4.19 0.00 0.00 1.75
196 197 9.643693 TTTCGAGTCTATTTCTAAACCGTTTAT 57.356 29.630 4.19 0.00 0.00 1.40
197 198 9.474920 TTTTCGAGTCTATTTCTAAACCGTTTA 57.525 29.630 3.73 3.73 0.00 2.01
198 199 7.951530 TTTCGAGTCTATTTCTAAACCGTTT 57.048 32.000 1.40 1.40 0.00 3.60
199 200 7.951530 TTTTCGAGTCTATTTCTAAACCGTT 57.048 32.000 0.00 0.00 0.00 4.44
200 201 7.412672 GCATTTTCGAGTCTATTTCTAAACCGT 60.413 37.037 0.00 0.00 0.00 4.83
201 202 6.900299 GCATTTTCGAGTCTATTTCTAAACCG 59.100 38.462 0.00 0.00 0.00 4.44
202 203 6.900299 CGCATTTTCGAGTCTATTTCTAAACC 59.100 38.462 0.00 0.00 0.00 3.27
203 204 7.453838 ACGCATTTTCGAGTCTATTTCTAAAC 58.546 34.615 0.00 0.00 0.00 2.01
204 205 7.591006 ACGCATTTTCGAGTCTATTTCTAAA 57.409 32.000 0.00 0.00 0.00 1.85
205 206 7.591006 AACGCATTTTCGAGTCTATTTCTAA 57.409 32.000 0.00 0.00 0.00 2.10
206 207 7.329962 TGAAACGCATTTTCGAGTCTATTTCTA 59.670 33.333 3.93 0.00 45.96 2.10
207 208 6.147164 TGAAACGCATTTTCGAGTCTATTTCT 59.853 34.615 3.93 0.00 45.96 2.52
208 209 6.304126 TGAAACGCATTTTCGAGTCTATTTC 58.696 36.000 3.93 0.00 45.96 2.17
209 210 6.236017 TGAAACGCATTTTCGAGTCTATTT 57.764 33.333 3.93 0.00 45.96 1.40
210 211 5.856126 TGAAACGCATTTTCGAGTCTATT 57.144 34.783 3.93 0.00 45.96 1.73
211 212 5.351465 ACATGAAACGCATTTTCGAGTCTAT 59.649 36.000 0.00 0.00 45.96 1.98
212 213 4.688879 ACATGAAACGCATTTTCGAGTCTA 59.311 37.500 0.00 0.00 45.96 2.59
213 214 3.498397 ACATGAAACGCATTTTCGAGTCT 59.502 39.130 0.00 0.00 45.96 3.24
214 215 3.810373 ACATGAAACGCATTTTCGAGTC 58.190 40.909 0.00 0.00 45.96 3.36
215 216 3.896648 ACATGAAACGCATTTTCGAGT 57.103 38.095 0.00 2.57 45.96 4.18
216 217 5.559694 AAAACATGAAACGCATTTTCGAG 57.440 34.783 0.00 2.07 45.96 4.04
217 218 5.957910 AAAAACATGAAACGCATTTTCGA 57.042 30.435 0.00 0.00 45.96 3.71
237 238 7.413109 GGCAAACCGTTTTTCTTCATACAAAAA 60.413 33.333 0.00 0.00 0.00 1.94
238 239 6.036191 GGCAAACCGTTTTTCTTCATACAAAA 59.964 34.615 0.00 0.00 0.00 2.44
239 240 5.520649 GGCAAACCGTTTTTCTTCATACAAA 59.479 36.000 0.00 0.00 0.00 2.83
240 241 5.044558 GGCAAACCGTTTTTCTTCATACAA 58.955 37.500 0.00 0.00 0.00 2.41
241 242 4.098044 TGGCAAACCGTTTTTCTTCATACA 59.902 37.500 0.00 0.00 39.70 2.29
242 243 4.612943 TGGCAAACCGTTTTTCTTCATAC 58.387 39.130 0.00 0.00 39.70 2.39
243 244 4.920640 TGGCAAACCGTTTTTCTTCATA 57.079 36.364 0.00 0.00 39.70 2.15
244 245 3.810310 TGGCAAACCGTTTTTCTTCAT 57.190 38.095 0.00 0.00 39.70 2.57
245 246 3.594603 TTGGCAAACCGTTTTTCTTCA 57.405 38.095 0.00 0.00 39.70 3.02
246 247 5.064071 TCAATTTGGCAAACCGTTTTTCTTC 59.936 36.000 16.00 0.00 39.70 2.87
247 248 4.938226 TCAATTTGGCAAACCGTTTTTCTT 59.062 33.333 16.00 0.00 39.70 2.52
248 249 4.508662 TCAATTTGGCAAACCGTTTTTCT 58.491 34.783 16.00 0.00 39.70 2.52
249 250 4.866682 TCAATTTGGCAAACCGTTTTTC 57.133 36.364 16.00 0.00 39.70 2.29
250 251 5.826601 AATCAATTTGGCAAACCGTTTTT 57.173 30.435 16.00 1.33 39.70 1.94
251 252 5.826601 AAATCAATTTGGCAAACCGTTTT 57.173 30.435 16.00 12.83 39.70 2.43
252 253 5.826601 AAAATCAATTTGGCAAACCGTTT 57.173 30.435 16.00 10.95 39.70 3.60
253 254 6.927294 TTAAAATCAATTTGGCAAACCGTT 57.073 29.167 16.00 2.92 39.70 4.44
254 255 6.540551 AGTTTAAAATCAATTTGGCAAACCGT 59.459 30.769 16.00 0.52 39.70 4.83
255 256 6.850317 CAGTTTAAAATCAATTTGGCAAACCG 59.150 34.615 16.00 9.39 39.70 4.44
256 257 7.643371 CACAGTTTAAAATCAATTTGGCAAACC 59.357 33.333 16.00 0.00 32.73 3.27
257 258 8.180920 ACACAGTTTAAAATCAATTTGGCAAAC 58.819 29.630 16.00 0.00 32.62 2.93
258 259 8.273780 ACACAGTTTAAAATCAATTTGGCAAA 57.726 26.923 16.01 16.01 32.27 3.68
259 260 7.856145 ACACAGTTTAAAATCAATTTGGCAA 57.144 28.000 0.00 0.00 32.27 4.52
260 261 7.550551 TCAACACAGTTTAAAATCAATTTGGCA 59.449 29.630 0.00 0.00 32.27 4.92
261 262 7.914465 TCAACACAGTTTAAAATCAATTTGGC 58.086 30.769 0.00 0.00 32.27 4.52
287 288 9.905171 ACAACCTACGTTTAAGTTTTTACAAAA 57.095 25.926 0.00 0.00 0.00 2.44
288 289 9.339492 CACAACCTACGTTTAAGTTTTTACAAA 57.661 29.630 0.00 0.00 0.00 2.83
289 290 8.725148 TCACAACCTACGTTTAAGTTTTTACAA 58.275 29.630 0.00 0.00 0.00 2.41
290 291 8.261492 TCACAACCTACGTTTAAGTTTTTACA 57.739 30.769 0.00 0.00 0.00 2.41
291 292 9.373750 GATCACAACCTACGTTTAAGTTTTTAC 57.626 33.333 0.00 0.00 0.00 2.01
292 293 8.558700 GGATCACAACCTACGTTTAAGTTTTTA 58.441 33.333 0.00 0.00 0.00 1.52
293 294 7.067251 TGGATCACAACCTACGTTTAAGTTTTT 59.933 33.333 0.00 0.00 0.00 1.94
294 295 6.543100 TGGATCACAACCTACGTTTAAGTTTT 59.457 34.615 0.00 0.00 0.00 2.43
295 296 6.017687 GTGGATCACAACCTACGTTTAAGTTT 60.018 38.462 0.00 0.00 34.08 2.66
296 297 5.467735 GTGGATCACAACCTACGTTTAAGTT 59.532 40.000 0.00 0.00 34.08 2.66
297 298 4.992951 GTGGATCACAACCTACGTTTAAGT 59.007 41.667 0.00 0.00 34.08 2.24
298 299 4.992319 TGTGGATCACAACCTACGTTTAAG 59.008 41.667 0.00 0.00 41.69 1.85
299 300 4.958509 TGTGGATCACAACCTACGTTTAA 58.041 39.130 0.00 0.00 41.69 1.52
300 301 4.603989 TGTGGATCACAACCTACGTTTA 57.396 40.909 0.00 0.00 41.69 2.01
301 302 3.478857 TGTGGATCACAACCTACGTTT 57.521 42.857 0.00 0.00 41.69 3.60
312 313 3.482156 AGCTATGGACATGTGGATCAC 57.518 47.619 1.15 0.00 34.56 3.06
313 314 4.454678 GAAAGCTATGGACATGTGGATCA 58.545 43.478 1.15 0.00 0.00 2.92
314 315 3.817647 GGAAAGCTATGGACATGTGGATC 59.182 47.826 1.15 0.00 0.00 3.36
315 316 3.202818 TGGAAAGCTATGGACATGTGGAT 59.797 43.478 1.15 0.00 0.00 3.41
316 317 2.575735 TGGAAAGCTATGGACATGTGGA 59.424 45.455 1.15 0.00 0.00 4.02
317 318 3.003394 TGGAAAGCTATGGACATGTGG 57.997 47.619 1.15 0.00 0.00 4.17
318 319 4.202080 CCATTGGAAAGCTATGGACATGTG 60.202 45.833 1.15 0.00 41.05 3.21
319 320 3.956199 CCATTGGAAAGCTATGGACATGT 59.044 43.478 6.61 0.00 41.05 3.21
320 321 3.956199 ACCATTGGAAAGCTATGGACATG 59.044 43.478 17.55 2.75 41.05 3.21
321 322 4.255510 ACCATTGGAAAGCTATGGACAT 57.744 40.909 17.55 0.00 41.05 3.06
322 323 3.737559 ACCATTGGAAAGCTATGGACA 57.262 42.857 17.55 0.00 41.05 4.02
323 324 6.313905 CGATATACCATTGGAAAGCTATGGAC 59.686 42.308 17.55 4.66 41.05 4.02
324 325 6.406370 CGATATACCATTGGAAAGCTATGGA 58.594 40.000 17.55 3.91 41.05 3.41
325 326 5.586243 CCGATATACCATTGGAAAGCTATGG 59.414 44.000 10.37 10.38 43.55 2.74
326 327 6.406370 TCCGATATACCATTGGAAAGCTATG 58.594 40.000 10.37 0.00 0.00 2.23
327 328 6.620877 TCCGATATACCATTGGAAAGCTAT 57.379 37.500 10.37 0.00 0.00 2.97
328 329 6.269077 TCTTCCGATATACCATTGGAAAGCTA 59.731 38.462 10.37 0.00 40.15 3.32
329 330 4.974645 TCCGATATACCATTGGAAAGCT 57.025 40.909 10.37 0.00 0.00 3.74
330 331 5.179555 GTCTTCCGATATACCATTGGAAAGC 59.820 44.000 10.37 0.00 40.15 3.51
331 332 5.701290 GGTCTTCCGATATACCATTGGAAAG 59.299 44.000 10.37 0.73 40.15 2.62
332 333 5.455612 GGGTCTTCCGATATACCATTGGAAA 60.456 44.000 10.37 0.00 40.15 3.13
333 334 4.041198 GGGTCTTCCGATATACCATTGGAA 59.959 45.833 10.37 5.94 38.82 3.53
334 335 3.581332 GGGTCTTCCGATATACCATTGGA 59.419 47.826 10.37 0.00 33.46 3.53
335 336 3.326588 TGGGTCTTCCGATATACCATTGG 59.673 47.826 0.00 0.00 38.76 3.16
336 337 4.617253 TGGGTCTTCCGATATACCATTG 57.383 45.455 0.00 0.00 38.76 2.82
337 338 5.843019 AATGGGTCTTCCGATATACCATT 57.157 39.130 0.00 0.00 41.09 3.16
338 339 5.514834 CCAAATGGGTCTTCCGATATACCAT 60.515 44.000 0.00 0.00 38.78 3.55
339 340 4.202419 CCAAATGGGTCTTCCGATATACCA 60.202 45.833 0.00 0.00 38.76 3.25
340 341 4.041198 TCCAAATGGGTCTTCCGATATACC 59.959 45.833 0.00 0.00 38.76 2.73
341 342 4.995487 GTCCAAATGGGTCTTCCGATATAC 59.005 45.833 0.00 0.00 38.76 1.47
342 343 4.656575 TGTCCAAATGGGTCTTCCGATATA 59.343 41.667 0.00 0.00 38.76 0.86
343 344 3.458118 TGTCCAAATGGGTCTTCCGATAT 59.542 43.478 0.00 0.00 38.76 1.63
344 345 2.841266 TGTCCAAATGGGTCTTCCGATA 59.159 45.455 0.00 0.00 38.76 2.92
345 346 1.633432 TGTCCAAATGGGTCTTCCGAT 59.367 47.619 0.00 0.00 38.76 4.18
346 347 1.060729 TGTCCAAATGGGTCTTCCGA 58.939 50.000 0.00 0.00 38.76 4.55
347 348 1.904287 TTGTCCAAATGGGTCTTCCG 58.096 50.000 0.00 0.00 38.76 4.30
348 349 3.165071 ACATTGTCCAAATGGGTCTTCC 58.835 45.455 0.00 0.00 38.11 3.46
349 350 4.615912 CGAACATTGTCCAAATGGGTCTTC 60.616 45.833 0.00 0.00 38.11 2.87
350 351 3.255642 CGAACATTGTCCAAATGGGTCTT 59.744 43.478 0.00 0.00 38.11 3.01
351 352 2.819608 CGAACATTGTCCAAATGGGTCT 59.180 45.455 0.00 0.00 38.11 3.85
352 353 2.671070 GCGAACATTGTCCAAATGGGTC 60.671 50.000 0.00 0.11 38.11 4.46
353 354 1.272212 GCGAACATTGTCCAAATGGGT 59.728 47.619 0.00 0.00 38.11 4.51
354 355 1.732077 CGCGAACATTGTCCAAATGGG 60.732 52.381 0.00 0.00 35.41 4.00
355 356 1.616620 CGCGAACATTGTCCAAATGG 58.383 50.000 0.00 0.00 32.14 3.16
356 357 1.198867 TCCGCGAACATTGTCCAAATG 59.801 47.619 8.23 0.00 0.00 2.32
357 358 1.529226 TCCGCGAACATTGTCCAAAT 58.471 45.000 8.23 0.00 0.00 2.32
358 359 1.265635 CTTCCGCGAACATTGTCCAAA 59.734 47.619 8.23 0.00 0.00 3.28
359 360 0.871722 CTTCCGCGAACATTGTCCAA 59.128 50.000 8.23 0.00 0.00 3.53
360 361 0.250124 ACTTCCGCGAACATTGTCCA 60.250 50.000 8.23 0.00 0.00 4.02
361 362 0.872388 AACTTCCGCGAACATTGTCC 59.128 50.000 8.23 0.00 0.00 4.02
362 363 1.529438 TGAACTTCCGCGAACATTGTC 59.471 47.619 8.23 0.00 0.00 3.18
363 364 1.588674 TGAACTTCCGCGAACATTGT 58.411 45.000 8.23 0.00 0.00 2.71
364 365 2.307049 GTTGAACTTCCGCGAACATTG 58.693 47.619 8.23 0.00 0.00 2.82
365 366 1.265905 GGTTGAACTTCCGCGAACATT 59.734 47.619 8.23 0.00 0.00 2.71
366 367 0.872388 GGTTGAACTTCCGCGAACAT 59.128 50.000 8.23 0.00 0.00 2.71
367 368 0.179067 AGGTTGAACTTCCGCGAACA 60.179 50.000 8.23 0.00 0.00 3.18
368 369 0.511653 GAGGTTGAACTTCCGCGAAC 59.488 55.000 8.23 1.05 0.00 3.95
369 370 0.391597 AGAGGTTGAACTTCCGCGAA 59.608 50.000 8.23 0.00 0.00 4.70
370 371 0.391597 AAGAGGTTGAACTTCCGCGA 59.608 50.000 8.23 0.00 0.00 5.87
371 372 0.790814 GAAGAGGTTGAACTTCCGCG 59.209 55.000 3.67 0.00 37.22 6.46
372 373 2.171341 AGAAGAGGTTGAACTTCCGC 57.829 50.000 3.67 0.00 42.09 5.54
373 374 2.808543 CCAAGAAGAGGTTGAACTTCCG 59.191 50.000 3.67 0.00 42.09 4.30
374 375 3.149981 CCCAAGAAGAGGTTGAACTTCC 58.850 50.000 3.67 0.00 42.09 3.46
375 376 3.565902 CACCCAAGAAGAGGTTGAACTTC 59.434 47.826 0.00 0.00 41.64 3.01
376 377 3.202151 TCACCCAAGAAGAGGTTGAACTT 59.798 43.478 0.00 0.00 32.72 2.66
377 378 2.777692 TCACCCAAGAAGAGGTTGAACT 59.222 45.455 0.00 0.00 32.72 3.01
378 379 3.208747 TCACCCAAGAAGAGGTTGAAC 57.791 47.619 0.00 0.00 32.72 3.18
379 380 3.202151 ACTTCACCCAAGAAGAGGTTGAA 59.798 43.478 10.37 0.00 46.18 2.69
380 381 2.777692 ACTTCACCCAAGAAGAGGTTGA 59.222 45.455 10.37 0.00 46.18 3.18
381 382 3.214696 ACTTCACCCAAGAAGAGGTTG 57.785 47.619 10.37 0.00 46.18 3.77
382 383 3.202151 TCAACTTCACCCAAGAAGAGGTT 59.798 43.478 10.37 0.00 46.18 3.50
383 384 2.777692 TCAACTTCACCCAAGAAGAGGT 59.222 45.455 10.37 0.00 46.18 3.85
384 385 3.492102 TCAACTTCACCCAAGAAGAGG 57.508 47.619 10.37 2.77 46.18 3.69
385 386 4.455606 AGTTCAACTTCACCCAAGAAGAG 58.544 43.478 10.37 3.41 46.18 2.85
386 387 4.503714 AGTTCAACTTCACCCAAGAAGA 57.496 40.909 10.37 0.00 46.18 2.87
388 389 5.367945 AGTAGTTCAACTTCACCCAAGAA 57.632 39.130 0.00 0.00 35.82 2.52
389 390 5.601313 AGTAGTAGTTCAACTTCACCCAAGA 59.399 40.000 0.00 0.00 35.82 3.02
390 391 5.696724 CAGTAGTAGTTCAACTTCACCCAAG 59.303 44.000 0.00 0.00 38.21 3.61
391 392 5.607477 CAGTAGTAGTTCAACTTCACCCAA 58.393 41.667 0.00 0.00 0.00 4.12
392 393 4.502604 GCAGTAGTAGTTCAACTTCACCCA 60.503 45.833 0.00 0.00 0.00 4.51
393 394 3.995048 GCAGTAGTAGTTCAACTTCACCC 59.005 47.826 0.00 0.00 0.00 4.61
394 395 4.686554 CAGCAGTAGTAGTTCAACTTCACC 59.313 45.833 0.00 0.00 0.00 4.02
395 396 5.175856 CACAGCAGTAGTAGTTCAACTTCAC 59.824 44.000 0.00 0.00 0.00 3.18
396 397 5.068591 TCACAGCAGTAGTAGTTCAACTTCA 59.931 40.000 0.00 0.00 0.00 3.02
397 398 5.402867 GTCACAGCAGTAGTAGTTCAACTTC 59.597 44.000 0.00 0.00 0.00 3.01
398 399 5.290386 GTCACAGCAGTAGTAGTTCAACTT 58.710 41.667 0.00 0.00 0.00 2.66
399 400 4.556898 CGTCACAGCAGTAGTAGTTCAACT 60.557 45.833 0.00 0.00 0.00 3.16
400 401 3.669122 CGTCACAGCAGTAGTAGTTCAAC 59.331 47.826 0.00 0.00 0.00 3.18
401 402 3.305131 CCGTCACAGCAGTAGTAGTTCAA 60.305 47.826 0.00 0.00 0.00 2.69
402 403 2.228103 CCGTCACAGCAGTAGTAGTTCA 59.772 50.000 0.00 0.00 0.00 3.18
403 404 2.415625 CCCGTCACAGCAGTAGTAGTTC 60.416 54.545 0.00 0.00 0.00 3.01
404 405 1.544691 CCCGTCACAGCAGTAGTAGTT 59.455 52.381 0.00 0.00 0.00 2.24
405 406 1.174783 CCCGTCACAGCAGTAGTAGT 58.825 55.000 0.00 0.00 0.00 2.73
406 407 1.132643 GACCCGTCACAGCAGTAGTAG 59.867 57.143 0.00 0.00 0.00 2.57
407 408 1.171308 GACCCGTCACAGCAGTAGTA 58.829 55.000 0.00 0.00 0.00 1.82
408 409 1.863662 CGACCCGTCACAGCAGTAGT 61.864 60.000 0.00 0.00 0.00 2.73
409 410 1.154016 CGACCCGTCACAGCAGTAG 60.154 63.158 0.00 0.00 0.00 2.57
410 411 2.632544 CCGACCCGTCACAGCAGTA 61.633 63.158 0.00 0.00 0.00 2.74
411 412 3.991051 CCGACCCGTCACAGCAGT 61.991 66.667 0.00 0.00 0.00 4.40
412 413 4.742201 CCCGACCCGTCACAGCAG 62.742 72.222 0.00 0.00 0.00 4.24
414 415 3.352338 CTACCCGACCCGTCACAGC 62.352 68.421 0.00 0.00 0.00 4.40
415 416 1.530013 AACTACCCGACCCGTCACAG 61.530 60.000 0.00 0.00 0.00 3.66
416 417 0.251121 TAACTACCCGACCCGTCACA 60.251 55.000 0.00 0.00 0.00 3.58
417 418 1.066152 GATAACTACCCGACCCGTCAC 59.934 57.143 0.00 0.00 0.00 3.67
418 419 1.340893 TGATAACTACCCGACCCGTCA 60.341 52.381 0.00 0.00 0.00 4.35
419 420 1.392589 TGATAACTACCCGACCCGTC 58.607 55.000 0.00 0.00 0.00 4.79
420 421 2.077687 ATGATAACTACCCGACCCGT 57.922 50.000 0.00 0.00 0.00 5.28
421 422 4.796038 ATTATGATAACTACCCGACCCG 57.204 45.455 0.00 0.00 0.00 5.28
484 485 9.503369 ACTAAGGAGTACTAACCCATTTTCTAT 57.497 33.333 0.00 0.00 32.65 1.98
485 486 8.906238 ACTAAGGAGTACTAACCCATTTTCTA 57.094 34.615 0.00 0.00 32.65 2.10
486 487 7.679025 AGACTAAGGAGTACTAACCCATTTTCT 59.321 37.037 0.00 0.00 35.45 2.52
487 488 7.764901 CAGACTAAGGAGTACTAACCCATTTTC 59.235 40.741 0.00 0.00 35.45 2.29
488 489 7.311109 CCAGACTAAGGAGTACTAACCCATTTT 60.311 40.741 0.00 0.00 35.45 1.82
489 490 6.156429 CCAGACTAAGGAGTACTAACCCATTT 59.844 42.308 0.00 0.00 35.45 2.32
490 491 5.661759 CCAGACTAAGGAGTACTAACCCATT 59.338 44.000 0.00 0.00 35.45 3.16
491 492 5.043582 TCCAGACTAAGGAGTACTAACCCAT 60.044 44.000 0.00 0.00 35.45 4.00
492 493 4.293102 TCCAGACTAAGGAGTACTAACCCA 59.707 45.833 0.00 0.00 35.45 4.51
493 494 4.864726 TCCAGACTAAGGAGTACTAACCC 58.135 47.826 0.00 0.00 35.45 4.11
523 524 0.539669 AAAGGGCTTGCAGTGTACCC 60.540 55.000 0.00 0.00 41.17 3.69
731 736 0.931702 CGTGTTGCAACCGTTACTCA 59.068 50.000 26.14 2.40 0.00 3.41
736 741 1.234821 ATGATCGTGTTGCAACCGTT 58.765 45.000 27.78 22.98 0.00 4.44
790 803 5.069516 ACTCTGTTTTCAGTCCGTTTAGGTA 59.930 40.000 0.00 0.00 46.98 3.08
820 833 7.399191 TGGTCAGTATTTCATGTTAGTAGGTCT 59.601 37.037 0.00 0.00 0.00 3.85
832 852 1.668419 GGCGCTGGTCAGTATTTCAT 58.332 50.000 7.64 0.00 0.00 2.57
835 855 1.449601 CGGGCGCTGGTCAGTATTT 60.450 57.895 7.64 0.00 0.00 1.40
853 873 0.897863 TAGCCATTGTTGTGCCACCC 60.898 55.000 0.00 0.00 0.00 4.61
858 878 2.554032 ACTTCTGTAGCCATTGTTGTGC 59.446 45.455 0.00 0.00 0.00 4.57
860 880 3.569701 CCAACTTCTGTAGCCATTGTTGT 59.430 43.478 0.00 0.00 33.65 3.32
861 881 3.057315 CCCAACTTCTGTAGCCATTGTTG 60.057 47.826 0.00 0.00 34.79 3.33
862 882 3.157087 CCCAACTTCTGTAGCCATTGTT 58.843 45.455 0.00 0.00 0.00 2.83
864 884 1.474077 GCCCAACTTCTGTAGCCATTG 59.526 52.381 0.00 0.00 0.00 2.82
865 885 1.616994 GGCCCAACTTCTGTAGCCATT 60.617 52.381 0.00 0.00 37.12 3.16
885 906 5.154222 GTTCTCTTTATTTGTTGGGCTTCG 58.846 41.667 0.00 0.00 0.00 3.79
908 929 5.509840 CGGTCCAGTATTAAATCCCTCTCTG 60.510 48.000 0.00 0.00 0.00 3.35
909 930 4.589374 CGGTCCAGTATTAAATCCCTCTCT 59.411 45.833 0.00 0.00 0.00 3.10
1042 1535 9.967451 TCTGACCAAAATATAAGGTAAATCACA 57.033 29.630 0.00 0.00 35.36 3.58
1078 1571 5.509498 ACAAAATCACATACTATGGGCAGT 58.491 37.500 1.11 0.00 32.41 4.40
1170 3716 8.946085 TGTATGTACCTTCTGAATCAATTTCAC 58.054 33.333 0.00 0.00 39.44 3.18
1229 3775 1.271840 TTCCCATCACCCCTTCCTCG 61.272 60.000 0.00 0.00 0.00 4.63
1232 3778 0.999712 TTCTTCCCATCACCCCTTCC 59.000 55.000 0.00 0.00 0.00 3.46
1297 3843 8.934023 TTTGGAGGTTAAAGACAGAATTATGT 57.066 30.769 5.18 5.18 35.68 2.29
1338 3885 9.995003 AATGAGAGATACATCCAATTAGAAGAC 57.005 33.333 0.00 0.00 0.00 3.01
1377 3924 6.784031 ACACCCAATCAAGAGAGATACTTTT 58.216 36.000 0.00 0.00 0.00 2.27
1391 3938 7.010160 AGGAAAGAAAAGAATACACCCAATCA 58.990 34.615 0.00 0.00 0.00 2.57
1397 3944 6.181190 AGGCTAGGAAAGAAAAGAATACACC 58.819 40.000 0.00 0.00 0.00 4.16
1438 3985 7.259088 ACCTTGACTAAATCACCTCATTAGT 57.741 36.000 0.00 0.00 41.31 2.24
1446 3993 8.349568 AGGAAATTAACCTTGACTAAATCACC 57.650 34.615 0.00 0.00 36.92 4.02
1532 4079 2.225117 ACTCCCTCCATTCCTTTGGTTG 60.225 50.000 0.00 0.00 38.01 3.77
1598 4209 3.731089 CACGAGGAGGGAGTAGTAGTAG 58.269 54.545 0.00 0.00 0.00 2.57
1599 4210 2.158842 GCACGAGGAGGGAGTAGTAGTA 60.159 54.545 0.00 0.00 0.00 1.82
1601 4212 1.310904 GCACGAGGAGGGAGTAGTAG 58.689 60.000 0.00 0.00 0.00 2.57
1602 4213 0.622136 TGCACGAGGAGGGAGTAGTA 59.378 55.000 0.00 0.00 0.00 1.82
1603 4214 0.033011 ATGCACGAGGAGGGAGTAGT 60.033 55.000 0.00 0.00 0.00 2.73
1741 4599 9.804758 ATTGTGTGTATCTCTTACTTTACTAGC 57.195 33.333 0.00 0.00 0.00 3.42
1827 4691 4.657013 AGCCCTCTAGAAAAAGGAAAGTG 58.343 43.478 0.00 0.00 34.35 3.16
1833 4697 7.112779 TCTGATTTTAGCCCTCTAGAAAAAGG 58.887 38.462 0.00 0.00 0.00 3.11
1845 4709 6.530019 TTCCTCAAAATCTGATTTTAGCCC 57.470 37.500 23.64 0.00 40.27 5.19
1939 5790 1.827969 ACTCCTCATACTGGTGCACTC 59.172 52.381 17.98 7.60 0.00 3.51
1943 5794 1.137872 CTCCACTCCTCATACTGGTGC 59.862 57.143 0.00 0.00 0.00 5.01
1946 5797 1.062886 TCCCTCCACTCCTCATACTGG 60.063 57.143 0.00 0.00 0.00 4.00
1947 5798 2.315176 CTCCCTCCACTCCTCATACTG 58.685 57.143 0.00 0.00 0.00 2.74
1958 5849 6.040616 TCTCGATCTTTTATTACTCCCTCCAC 59.959 42.308 0.00 0.00 0.00 4.02
1996 5887 8.462016 GTTTCCCGATGTTTTCTACTAGTACTA 58.538 37.037 1.89 1.89 0.00 1.82
1997 5888 7.318893 GTTTCCCGATGTTTTCTACTAGTACT 58.681 38.462 0.00 0.00 0.00 2.73
1998 5889 6.533012 GGTTTCCCGATGTTTTCTACTAGTAC 59.467 42.308 0.00 0.00 0.00 2.73
1999 5890 6.351286 GGGTTTCCCGATGTTTTCTACTAGTA 60.351 42.308 1.89 1.89 32.13 1.82
2000 5891 5.485620 GGTTTCCCGATGTTTTCTACTAGT 58.514 41.667 0.00 0.00 0.00 2.57
2001 5892 4.874396 GGGTTTCCCGATGTTTTCTACTAG 59.126 45.833 0.00 0.00 32.13 2.57
2002 5893 4.323715 GGGGTTTCCCGATGTTTTCTACTA 60.324 45.833 0.00 0.00 46.66 1.82
2003 5894 3.560668 GGGGTTTCCCGATGTTTTCTACT 60.561 47.826 0.00 0.00 46.66 2.57
2004 5895 2.751259 GGGGTTTCCCGATGTTTTCTAC 59.249 50.000 0.00 0.00 46.66 2.59
2035 5926 1.682849 CTTGGGGTGGTTGGATCGA 59.317 57.895 0.00 0.00 0.00 3.59
2036 5927 1.378514 CCTTGGGGTGGTTGGATCG 60.379 63.158 0.00 0.00 0.00 3.69
2037 5928 1.000359 CCCTTGGGGTGGTTGGATC 60.000 63.158 0.00 0.00 38.25 3.36
2038 5929 3.190349 CCCTTGGGGTGGTTGGAT 58.810 61.111 0.00 0.00 38.25 3.41
2474 6371 4.035091 GCATAACATACATGCGTGAGGAAA 59.965 41.667 14.17 0.00 39.43 3.13
2475 6372 3.559655 GCATAACATACATGCGTGAGGAA 59.440 43.478 14.17 0.00 39.43 3.36
2476 6373 3.130633 GCATAACATACATGCGTGAGGA 58.869 45.455 14.17 0.00 39.43 3.71
2477 6374 3.526385 GCATAACATACATGCGTGAGG 57.474 47.619 14.17 3.85 39.43 3.86
2505 6402 2.888534 TATTCGGTCGGCGCTTGC 60.889 61.111 7.64 0.00 38.11 4.01
2518 6415 2.222819 CGCTCTTTTCACCTGCGTATTC 60.223 50.000 0.00 0.00 41.45 1.75
2523 6420 2.863153 CCGCTCTTTTCACCTGCG 59.137 61.111 0.00 0.00 45.22 5.18
2726 6623 4.415332 GTTCTCCTCGCCGTCGCA 62.415 66.667 0.00 0.00 35.26 5.10
2790 6687 3.998672 TCACGCGGTCCAGGAACC 61.999 66.667 12.47 0.00 35.86 3.62
2815 6712 2.863153 CCGTTGCAGAAGCCGAAG 59.137 61.111 0.00 0.00 41.13 3.79
2858 6755 4.791069 GGCCCCGGTACCCTGAGA 62.791 72.222 6.25 0.00 0.00 3.27
2958 6855 3.743396 GTCGATGATTATGAAGGCAGTCC 59.257 47.826 0.00 0.00 0.00 3.85
3172 7075 3.002791 TCGTACCGACTACCAAGTACAG 58.997 50.000 0.00 0.00 35.56 2.74
3173 7076 3.052455 TCGTACCGACTACCAAGTACA 57.948 47.619 0.00 0.00 35.56 2.90
3319 7226 1.200716 AGCATCACCATGTTTTGAGCG 59.799 47.619 0.00 0.00 31.86 5.03
3427 7337 2.032550 GCATCCTCATCCACGTTTGATG 59.967 50.000 15.53 15.53 40.77 3.07
3618 7537 3.692101 CGTGTTATTTATCCCAGGTTGCA 59.308 43.478 0.00 0.00 0.00 4.08
3619 7538 3.942748 TCGTGTTATTTATCCCAGGTTGC 59.057 43.478 0.00 0.00 0.00 4.17
3620 7539 5.424757 TCTCGTGTTATTTATCCCAGGTTG 58.575 41.667 0.00 0.00 0.00 3.77
3621 7540 5.396436 CCTCTCGTGTTATTTATCCCAGGTT 60.396 44.000 0.00 0.00 0.00 3.50
3622 7541 4.101119 CCTCTCGTGTTATTTATCCCAGGT 59.899 45.833 0.00 0.00 0.00 4.00
3623 7542 4.101119 ACCTCTCGTGTTATTTATCCCAGG 59.899 45.833 0.00 0.00 0.00 4.45
3624 7543 5.050490 CACCTCTCGTGTTATTTATCCCAG 58.950 45.833 0.00 0.00 37.73 4.45
3625 7544 4.712829 TCACCTCTCGTGTTATTTATCCCA 59.287 41.667 0.00 0.00 43.51 4.37
3626 7545 5.272283 TCACCTCTCGTGTTATTTATCCC 57.728 43.478 0.00 0.00 43.51 3.85
3627 7546 6.103997 TGTTCACCTCTCGTGTTATTTATCC 58.896 40.000 0.00 0.00 43.51 2.59
3628 7547 7.042658 GGATGTTCACCTCTCGTGTTATTTATC 60.043 40.741 0.00 0.00 43.51 1.75
3629 7548 6.761714 GGATGTTCACCTCTCGTGTTATTTAT 59.238 38.462 0.00 0.00 43.51 1.40
3630 7549 6.103997 GGATGTTCACCTCTCGTGTTATTTA 58.896 40.000 0.00 0.00 43.51 1.40
3631 7550 4.935808 GGATGTTCACCTCTCGTGTTATTT 59.064 41.667 0.00 0.00 43.51 1.40
3632 7551 4.020573 TGGATGTTCACCTCTCGTGTTATT 60.021 41.667 0.00 0.00 43.51 1.40
3868 7803 3.760684 GGACCTAAACTCACGAGGAAGTA 59.239 47.826 0.00 0.00 34.24 2.24
3971 7911 2.880890 CCAGCTATGTGGATTTGCTACC 59.119 50.000 0.00 0.00 40.44 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.