>input_sequence_35511
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----------------------------------------------------ATAATATGCGATTGTGTAAATAAATGTT
CATCAGATTTTGTCTGTGATTTACCTTATATTTTGGTCAGAATTGATTTAACTGCCCATAGTATGTGATTTTGTAAATAA
ATGTTCATTAAATGTACTTCTGATTATCTTTTTATATATC----------------------------------------
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-------------AAAATTTGGTAAGTAAATAAAAGTGAAATTGATTCAGAAGGTACATACACTAAAGTGATTAATTATT
ATACGGGGAAGGTTCGAGGAAGGGGTGATGGGAAGAAAGATGAATCGGGAATTTTTAATTAGTATAATAATATAGAGATT
TCACATAATTCTGTCTTTA-ACCTCCAAAAAAAGAAAAGTATCTGTCTTCTAATTGGATGTATCTCTCATTGTATAGAAA
AAGAAAAGTATCTCTCTTGATTGGGTGTATTCTTTTCTTTCCTAGCCTAAATGATTTACTTGCCACTAATGAGGTGATTT
AGTCAAGGTTAATTTCCTTCTAAATTATGTATAATTATGTGCATTGTTCATCGTGATCAAAATAATACACCTTACATACA
ACCAAAGGAATGGAGGGAGTATAATATGATACACTCCAA-----------------------------------------
-----------------------TTTTTTGATATAATTTTAGCGTATGCTACTACTACTCCCTCCTCGTGCATA------
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-----------------------------------------------------------ATAGTCCCTCCAGTTTTTTAT
GTAAGGTGTATTATTTTTAGGACGATGATCAAGGCATAAAATTATACAAAATTAA----------------------CCT
TCGTTAAATCATTGATTAGTGACAAATAAATCATTTAGGCTAGTAAAGTAAGAGATACACACAATCAGGAGAGAGGTATT
----TTT--TTTTTCTTTATAAGGAGAGATACATGCAATCAAAGGAGAGACACTTTCCTTTTTCTAGAGGGCTAAAATCA
GATTTTGAGGAATTAGAAAAAATGCACCTTATATTATGAAATTTTATAAA------------------------------
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---------------------------------------------------------------------------AGAAA
TAAATACACCTTATA--AAGGAACGGAGGGAGTGCACC----------------------------------------AG
TATGAGGAGTGGAGGGAGTAATAAAAGATCGAGACGCTTGACGATCTAGTACTAGTAGAAAACATCGGGAAACCCCCTCC
CCGTGTCGATCCAACCACCCCAAGGGCCGCCACTCCCACCGTACCGCGGCAATGCCGACGCCGCGAAACCGGAAGGT---
---CCCTGCCCCTGCCCCGCCGCGCCGGCCGCCTCCCCGCCTGGAGTACCGCGCAAAGGACGGCGCGTGGTACGGCGCGC
GCATGGCGCTGCAGGGCGACTCGCTGCGCGTCATGTTCGAGGAATTCCGCGAGGAGTTCGACGAGTGGCACGACCCAGAC
GCGGGCGACCTCGCCTCCCCGGGCGACGTGGCCGCGCTCCGCGCCAGGTTCCGCCCGGCGAGCCCGCCCCTCGAGGACGC
CCGCTGCGGCGACCTCCGCCGCGGCCAGCCGCTCTGCGTCCTCCGCGCCATGCCCGACGGCGAGCGCAAGTACTACGACG
CCGTCCTCGATTCCGTACGCTCTTCGCGCTGCGCCGTCCTCACTTCCTTCTTTCCTCACGCATGTATGTTATGCTTTATC
AGCAAGCGCCGACCGAATACGCAGGTGAAAAGAGCGGCTCACGTCACCGTGGGCGGCGAGGAGCGGTGCGCGTGCCGCTT
CACGGTGCGGTGGACGGACGGGCCGTTCCGCGGCGGCTTCGACGAAGTCGGCGTCGACGAGGTCTGCTGCGTGCGGGACT
CGCCGGTCAACGACCCGGTGCTGAGCGAGTTCCTGGACCGCGTGACGAGGTCGTTCGGCTTCTGCGACGGCGAGGAGAAC
GCGAAGGCGGCGCAGGACTCGCCGGTCCAGGACCCGCGGCTGAACGGGTTCCTGGACCGCGTGACGAAGTCCTTCGGCTT
CTGCAACGGCGAGGAGAAACCGAAGGCGGCGGCGTCTCAGGGTACCGGGGCCACGCCGGCCCCGGGCAGCGAGCAGAGCG
CGACGGCGGCGCCTCAGGCGAGCGGGGCCACGTCGCTCTGGGGCGGCGAGGGGGGGACTGCCTTCATAATCATCGACTAG
GTGTCGCGGCCTGCACTGCATTCCTGCGCTTCTGTTTCGATGTATCCATG-----TGCCTGCCCTGCTCGACGATTGGTG
AGGGTATTTTGTGCCTTTGCGTTGCTTCATTCAGTTACTGTCTTTGTCTT-CCATGTTTCGTGTCTCAAGTCTAATCTTG
TTCGGCCCCAAAATGGACGCCATCGTTGGTAGTACTGTACTTGGTAGTCGGTACGATTATGTATCTCTGTTCATGTTGCC
ATCTTTCCCTGGAACCTGAAAGCCATATTAT----TGAA-----------------------------------------
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-----------------------------------------------------------------------------
>chr1A_1_TraesCS1A01G241500
TTTCCAGTGCCATATCATTTGCATCAATCCAAGTTGCCGTTTTCAAGTTACGCGTAAAAAATGAGCTCGGCTGTTTTGTT
TGAGAAAATTCGTCATTTTTCAAATTACTCGTTAACCGTATGAAATTGGAAAAAAAATATGTGAAATAAGAGGATTTGCA
GCAACTTTTCAATGCCGTATCATTTGCCTCATTCCGATAAACGGTTTAGAAATAGACTCGAAAATGCGTTTCATGTTTTT
TTGTATGAAGAAAAACGGTTTGCCAAATTGATTTTAAACTGTGTTGATTTTGTAAAAACTTAAACGTAGGTTGTGATCCA
CATGTCCATAGCTTTCCAATGGTATATCGGAAGACCCATTTGGACAATGTTCGCGGAAGTTCAACCTCTTCTTGGGTGAA
GTTGAACTACTACTGCTGTGACGGGTCGGGTAGTTATCATAATATTATTCTGATCCCGTGATCAAAATAATGTTTATATA
TATAATAGAAAATGGGTTAGTACTCCTTAGTCTGGAGAAAAAAGGGTACACTGCAAGCCCTTTTAACATACTTTATTTAA
CATATGTAGCCAATTCACATGAGGTA-AAAACATTTAATATTCAATAGCAATTAATTAGGTTAGTTAAGTTTATGCCCTA
AAAGAAC--TTATATTAGTTAACAGGAACGACTAATAGCATGGTTGGAAATTAAGCATTTTTCTGGTCAAATTACATATA
AAA-TTATTTTAATCTGAGTAACGGTTGCAA--------CACGATCATTTTAACATATTTTGTGTAAATAATAAAGACCA
GGTACCTAAACGGACTGAAAACAGAGTGAACTAGACCTACT-------AACATGAAATACTGACCAGCGCCCGGGTGGCA
CAACAA-TGGCTACAGAAGTTGGGCCGAAGCCCAACAAATAAAGAGAACAGAGAGGGATTTAATACTGGACCGTGGGTTA
TTT-----------------------------------------------------------------------------
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--------------------TTTTAAGATGCG------------------------------------------------
--TCCAACGGGATATAAATATTCTAGTATGTTAGTTTGTGATTTACC-----ATAATATGCGATTGTGTAAATAAATGTT
CATCAGATTTTGTCTGTGATTTACCTTATATTTTGGTCAGAATTGATTTAACTGCCCATAGTATGTGATTTTGTAAATAA
ATGTTCATTAAATGTACTTCTGATTATCTTTTTATATATC----------------------------------------
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-------------AAAATTTGGTAAGTAAATAAAAGTGAAATTGATTCAGAAGGTACATACACTAAAGTGATTAATTATT
ATACGGGGAAGGTTCGAGGAAGGGGTGATGGGAAGAAAGATGAATCGGGAATTTTTAATTAGTATAATAATATAGAGATT
TCACATAATTCTGTCTTTA-ACCTCCAAAAAAAGAAAAGTATCTGTCTTCTAATTGGATGTATCTCTCATTGTATAGAAA
AAGAAAAGTATCTCTCTTGATTGGGTGTATTCTTTTCTTTCCTAGCCTAAATGATTTACTTGCCACTAATGAGGTGATTT
AGTCAAGGTTAATTTCCTTCTAAATTATGTATAATTATGTGCATTGTTCATCGTGATCAAAATAATACACCTTACATACA
ACCAAAGGAATGGAGGGAGTATAATATGATACACTCCAA-----------------------------------------
-----------------------TTTTTTGATATAATTTTAGCGTATGCTACTACTACTCCCTCCTCGTGCATA------
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-----------------------------------------------------------ATAGTCCCTCCAGTTTTTTAT
GTAAGGTGTATTATTTTTAGGACGATGATCAAGGCATAAAATTATACAAAATTAA----------------------CCT
TCGTTAAATCATTGATTAGTGACAAATAAATCATTTAGGCTAGTAAAGTAAGAGATACACACAATCAGGAGAGAGGTATT
----TTT--TTTTTCTTTATAAGGAGAGATACATGCAATCAAAGGAGAGACACTTTCCTTTTTCTAGAGGGCTAAAATCA
GATTTTGAGGAATTAGAAAAAATGCACCTTATATTATGAAATTTTATAAA------------------------------
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---------------------------------------------------------------------------AGAAA
TAAATACACCTTATA--AAGGAACGGAGGGAGTGCACC----------------------------------------AG
TATGAGGAGTGGAGGGAGTAATAAAAGATCGAGACGCTTGACGATCTAGTACTAGTAGAAAACATCGGGAAACCCCCTCC
CCGTGTCGATCCAACCACCCCAAGGGCCGCCACTCCCACCGTACCGCGGCAATGCCGACGCCGCGAAACCGGAAGGT---
---CCCTGCCCCTGCCCCGCCGCGCCGGCCGCCTCCCCGCCTGGAGTACCGCGCAAAGGACGGCGCGTGGTACGGCGCGC
GCATGGCGCTGCAGGGCGACTCGCTGCGCGTCATGTTCGAGGAATTCCGCGAGGAGTTCGACGAGTGGCACGACCCAGAC
GCGGGCGACCTCGCCTCCCCGGGCGACGTGGCCGCGCTCCGCGCCAGGTTCCGCCCGGCGAGCCCGCCCCTCGAGGACGC
CCGCTGCGGCGACCTCCGCCGCGGCCAGCCGCTCTGCGTCCTCCGCGCCATGCCCGACGGCGAGCGCAAGTACTACGACG
CCGTCCTCGATTCCGTACGCTCTTCGCGCTGCGCCGTCCTCACTTCCTTCTTTCCTCACGCATGTATGTTATGCTTTATC
AGCAAGCGCCGACCGAATACGCAGGTGAAAAGAGCGGCTCACGTCACCGTGGGCGGCGAGGAGCGGTGCGCGTGCCGCTT
CACGGTGCGGTGGACGGACGGGCCGTTCCGCGGCGGCTTCGACGAAGTCGGCGTCGACGAGGTCTGCTGCGTGCGGGACT
CGCCGGTCAACGACCCGGTGCTGAGCGAGTTCCTGGACCGCGTGACGAGGTCGTTCGGCTTCTGCGACGGCGAGGAGAAC
GCGAAGGCGGCGCAGGACTCGCCGGTCCAGGACCCGCGGCTGAACGGGTTCCTGGACCGCGTGACGAAGTCCTTCGGCTT
CTGCAACGGCGAGGAGAAACCGAAGGCGGCGGCGTCTCAGGGTACCGGGGCCACGCCGGCCCCGGGCAGCGAGCAGAGCG
CGACGGCGGCGCCTCAGGCGAGCGGGGCCACGTCGCTCTGGGGCGGCGAGGGGGGGACTGCCTTCATAATCATCGACTAG
GTGTCGCGGCCTGCACTGCATTCCTGCGCTTCTGTTTCGATGTATCCATG-----TGCCTGCCCTGCTCGACGATTGGTG
AGGGTATTTTGTGCCTTTGCGTTGCTTCATTCAGTTACTGTCTTTGTCTT-CCATGTTTCGTGTCTCAAGTCTAATCTTG
TTCGGCCCCAAAATGGACGCCATCGTTGGTAGTACTGTACTTGGTAGTCGGTACGATTATGTATCTCTGTTCATGTTGCC
ATCTTTCCCTGGAACCTGAAAGCCATATTAT----TGAACTGAGCCAAATTTTATTCTGTATACCTGAAAACCAAAATAG
CATCCACCAAGCGTTTAAATAACAGCGCTCAAAACATGGTGATGCTACCTAGTGCAAAGTAGAACAAGATTACATTAGAC
CTAATGTTTATGCATTGAAC---CCCTCCCCCCAAGGTTGATGAAACCTTGATATTCATCAAACGTGGATGAGGATGCGT
TCCGCGTCAGTTAGTTAGCTCCAGCGGGTAATTGCCGAGCCAGCAGACAGTACGAGCCTGTAG-CCTACGAACAGTAGCA
ATA--------ACCCAAGTTTTGGTTTCTAGGAATTTTCCTAACGCTAACATCCATCTCTCTCCATTGAGCAACACCTTT
ATCTCTGCAACCTGGGTGCAACCTGGGATAAATAACACGAGAGGTGAACATCCACGGACTGAATCATCGAGACTCCTCAA
GAGGTATCAGTTTAAGGGTCATCTGCACAGATCGTACCAAGGTT--CAGCACACAGCTGTAACGACCGCCAGGGCACCAC
CACGGTGATCACGCACTAATCA--------TACCAGTGTCCACTGTGCCATCAGCCGCCTGGAAGGGGCCGTCGACGTTG
AGATTAACGTGATCTTCTGGCGGTGGC------ACCCGCATCTACTTCCTCGTGAGTTTAGGTCCAAGGGCGGTGGCGCC
CTTCGATATGTATCAGCTTAGCACCTTCTT-----TGTCAAAATCTGCATGTAGAAATTGCTCAATGATCGGTAGCAAAT
CCA-----------------------------------------------------------------------------
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------------------------------------CATAGCTGGCTAGGAACTTCTTGGATCCTTCGACGGTCAGCAGA
GCGATTCAGTAACCTGATGTTTTTCCATCATCAAGGCTTCTCTTACAGTTGCAGTTGCAG------GACAAATGTGTGGG
CTTCAGAACCAACCCACATATGGCTTCCAAACCAT---ACAAGGGTACACCATGTACAAGTTTGTACTACTACAA---AT
TTACTCATGAGGGCAGTTTGGATAAGTCAGACTACCCTTGCGCCTGGCAGGAGCTTAAAAGTCTGAAGAATGAAATT
>chr1B_501
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--------------------TACTCCTTAGTCTGTAAGAAAAAAAGTGCACTGCATGCCCTTTTAACATACTTTATTTAA
CATATGTAGCCAATTTAAATGAGATAGAAAACATTTAATATTTCATAATAATTAATTAGGTTAATTAAGGTTATGCCCTG
AAAAGAGTTTTATATTAGTTAACATGAACGACTAATAGCATGGCTGGAAACTAAGCATTTTTGTGGTCAAATTACATATA
TAAATTATTTTAATACGAGTGACAGTTGCAAAGTTATAACATGATCATTTCAACATATTCTCTGTAAATAATAAAGACCA
GGGACCTAAACAAGCTGAAAACAGAGTTAATTGGACCTACTGCAGCTGAACGTGGATTACTAACCAGCGCCCAGGTGCGT
GCAATAGTGGCTACAGAAGTTGGGCGGAAGCCCAGCAGATAAAGAGAAAGGAGAGGGACTTAATATTGTATCCCGGGTTA
TTTAAAAGAACACCAAGGGGCTTTTTATAAAACATACGATAATGAACAGGCATGAATAGTATTTATAATGATA-------
----------------------------------------------------------------------------AAGT
AGTATATATAATACCTTATGATAGTATATGAGATATGTGAGGTAACTACCTCTGGGTGGTAGGATAGATTTTCCCTATAT
ATATAGTACGCGCATATAAAAATCTGAGAGCTCAAACACCATCCCATATATGTATTCTCTTTGTATTTTCTGTTTTTGAT
TGATTTAATTTCGATGCAGGAGAGAGA----TTGCTTGGACCAATGCAAAAGGCTATTTCCTCTGTCTTACTATCTTCGT
TCTTTTATATAAGGTGTATTTACCTTTTGATAAAATTCCATAATGTAAGGTGCTATTTTTAAGTAGAACAATGCTCGTGC
GTTGCAACTAGATATAAATATTATAGCACGTTAGTTTGTGATTTACCTAAGCATAATATGCGACTGGGTAAATAAATGTT
CATTATATTCTATCCATGATTGATCTTATATTTTGATTAGAAGTGATTTTCCTGCCCATAGCATACAATTTTTAAAATAA
ATGTTCATTAAATTCTGCCCATGATTTACCTTATATTTTGATCAGAAGTTTATTAGATAAATTAACGTGAAATTGGTTCA
AAAGTAAGTAAACTAAGGCGATTGATTATTATACATGGATGATTAGATGAAGGGGGTGGGAAGAAAGGTGAAACGGGACC
TTACGCTCTTTTTAAGTAGTAATAATCTCTACTCCTAATGGAGCAGTTGGTAGTCTCGCTTCCAGGTTTTTTTCGTCCCA
TCACTTTCGTCTGGTTTTTTTTCGTAGGTTAACCGTCGTAGATTTTTTTCGATGTTGGTTTCTTATTCACCCGTTTATTT
ACCCCTCAGCTCTTTCCTTGCAAATCAGCACTTTCCAAACGTGCACGCAATCACGGATCTAAATTTACTAACTTATCCAA
ATCAACCGATACCTTCCATTATTGCAAATTTCTTTAGGAAACAAATAATAGATTTTAAGGAAACAAATAAAAGATTTTAA
AGACGCATCATACTTTACTAACAATCACTAAAAATCAAATCTAAATTAATTAACCTTACCTTAAATCACTCGATCACTTT
AATTAGAAAATATTTTTTTCCTAACTGCACCCCGCTTAGTGTGCACATAACAATCCGAAGTAATTAGAGTCACATGATTG
AATCCATTTATTTAGAGCGACATGATTGCGTTCCGGGATGGAGGCCATGATTTCGTCGAGGTCGTTGCTGCCTCCTACAC
TCAGGATGTGTCGCCGAGATCGAGGCGAGCATGAGGAGCTGTGGCCACCGCCATGGTCACCCCATCGCAGGGTATGGAGC
ACGCCGTCGGCCTACAGCTTGTGGAGATCACTGTTGCTCTTCAGGTCGCGTGGTGACCGGATCTTGCCGATGTGTCCCTC
CCCGACGACCTCCTCTTCGCCCGGTTGGCTGGCATGGATCTCGCCACTACTGCCCTCAACTTCTCTGCCTCGAGCTCGAC
GGTCAGCCACCATGGATCCCCCAGCTGGAGGGTCACGTGAACCAGCCGTCCTCCCATGCTGCAGCGGCGAGAATGTGACA
TGGCTCTCCGTACACGAAGAGTGGAGTTCGGTCAAGTACTTATATACTTGGCCTCTACTGCTATCCATGTACATGGAGAA
GAACAGGCAACCGCTCATTCATGCTTCGTTCCACTCCTTTGCGCTACATTATTGGAGGTGACATTTTTCTATCTCTCTAT
GTTGTAACAAGCCTGCTGCCTGCATAGTTAATGGATTTTTTATTTAAATTTATCGCTGCTTAGTGCTTTGTTGCAATTGT
TCACCCAAGATTCTTATATATAATCTGAGCGTATGTAGGCATACTTAGCTTTGCTATTCCATTTTTTTCTGGCGCATAGA
AATAAGAGTATTGTCCAGGTTAGGTATTCAATTGAGTATGGTATTTGGATTGCTATCAGAATGTCTTTTCTATGCATGTG
ATTTCTCATATCTGATTATAATATTTGTGAAGTCGTGCATTGCACGTGCACTTGGAAGCGGGCCCGTGGCCCGCGCTGGA
CGGCGCCGACGCCGACCCGAACCACCTCGTCCGCGTATTCTTGGGGTTGTGGCTGGTCGATTTACATGAAATTAATTCCC
TCAATTCTGGTGGCAAATATAATACACATAATCCATATTGTTATGCACTAGCGTGTATGTGTGAAATAGATGGATTATGG
TCCTGTACCCAATAAGATGGATATGTGTGTGTGTTAGAGCGAGAGGGAGACGGGGATAGAGAGTGAGGAAGAGGGAGGGA
GAGTGTGGTTCTGTGTGTGTGTGAAGATTTGATGGTAAAAAAAGTCGCCAATGTCGTAATATTGAACTCTTAAAGTTAAT
GTGGCCCCGTTGCAACGCACGGGCGTTCTTCTAGTAACTAGAACAATGCCCGTGCGTTGCAACGGGATATAGATATTCTA
GTATGTTACCTTGTGATTTACTTGCACATAATAGGATTGTGTAAATAAATGATAATCAAATTATGTATGTGATTTACCTT
ATATTTTGATTGGAAGTGATTTATCTGCATGTATACGATTTTTTAAATAAATGTCATCAAATTCTGCCCGTGATTTGCCT
TATATTTTGATCAAAAGTTTGGTAAGTAAATTAAAATGGAATTGATTCGGAAGATAAGT-AATTAAGGTTATTGATTATT
ATACAAGGAAAGTTGGACAAAGAGGTGGTGGGAAG---------------------------------------------
----------------------------AAAAGGGAAAGTATCTCTCCCGACTGCATGT---------------------
AAGGAAAGTATATCTCTCGATTGTGTGTATTTTTTCCTTCACTAACCTGAATGATTTACTTGCCGCTAATTA-ATGATTT
AGCCAAGGTTAATTTTGTCCTAAATTATGTATAATTATATGCACTGTTCATCGTGATCAAAACGATACACCTTACATAAA
GCCAAAGGAATGGAGGGAGCATAGTATGATACTCCATCCAATTCAAATAATTGAGGCAATTTTTTATATTTCCATGATTT
TTTTATTAGATGTATTTGTTTTCTTTTTTGATAAAATTTCGTAATGTGAGATGCATTTGTTCTAATTTATCGTAATTTTA
TTCTTGGCCTTCTAGAAAAAAAGTATCTCTCACATGATTGCATTTATCTCTAGAAAATAAAGAAATTATATCTCTTCTGA
TTGCATGCATCTCTCTATTTCCTAGCCTAAATGATTTAGACATTTAGTTGCCAATAATGAATGAATTAGACAAGGATAAT
TTCGTCCTAAATTGTCTATAATTATGTGCCTTAATCACTTACCAAAAATTATATACCTTATACTTCCTCCATTCCTTTAT
GTAAGGTGTATTTTTTCTAC-ACGGTGACCAAGGCACA----------TAATTATAGACATGTTAAGACGAAATTACCCT
CGGTAAATTTATTGGTTAGTAGCAAGTCAATCATTTAGTCGAGAAAAGTATGAGATACATACAATCGACAGAGAGATATT
----TTTCATCTTTTGCTACAAGGAGAGGTATACACAATCATGAGAGATGTTTCTTTTAAGGGCTAACAAAGGA------
-ATTATGAGGAATTAGAAGAAATGAACCTTACATTCTGATA--TTATATA------------------------------
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---------------------------------------------------------------------------AAAAA
TAAATACCCCTTATATAAAGAAACAGAGGAAGTACAATTTTAGAGTATGCTACTAGTACTTACGACCACAAATACAGGAG
TATGAGGAATGGAGTGAGTAATAAAAGGTCGAGACGCTTGACGATC---------TAGAAAACATCGGGAAT--CCCTCC
CCGTGC---TCCAACCACCCCAAGCGCCGCCACTCCCACCGTACCGCGGCAATGCCGGCGCCGCGAAAGCGGAAGGTCCC
TGCCCCTGCCCCTGCCCCGCCGCGCCGGCCGCCTCCCCGCCTGGAGTACCGCGCAAAGGACGGCGCGTGGTACGCCGCGC
GCATGGCGCTGCAGGGCGACTCGCTGCGCGTCATGTTCGAGGAATTCCTCGAGGAGTTCGACGAGTGGCACGAGCCAAAC
GCGGCCTACCTCGCCTCCCCGCGCGACGTGGCCGTGCTCCGCGCCAGGTTCCGCCCGGCGAGCCCGCCCCTCGAGGACGC
CCGCTGCGGCGACCTCCGCCGCGGCCAGCCGCTCTGCGTCCTCCGCGCCATGCCCGACAGCGAGCGCAAGTACTACGACG
CCGTCCTCGATTCCGTAAGCCCTTCGCGCTGCGCCGTCCTCACTTCCTTCA----TCACGCATGTATGTTATGCTTTATC
AACAAGCGCCGACCAAATATGCAGGTGAAAAGAGCGGCTCACGTCACCGTGGGCGGCGAGGAGCGGTGCGCGTGCCGCTT
CACGGTGCGGTGGACGGACGGGCCGCTCCGCGGCGGCTTGGACGAGGTCGGCGTCGACGAGGTCTGCTGCGTGCGGGACT
CGCCGGTCCAGGACCCGGCGCTGAGCGAGTTCCTGGACCGCGTGACGAGGTCGTTCGGCTTCCGCGACGGCGAGGAGAAC
GCGAAGGCGGTGCAGGACTCGCCAGTCCAGGACCCGCGGCTGAACGAGTTCCTGGACCGCGTGACGAAGTCGTCCGGCTT
CTGCAACGGCGAGGAGAAACCGAA---GGCGGCGCCTCAGGGTACCGGGGCCACGTCGGCCCCGGGCAGCGAGCAGAGCG
CGACGGCGGCGCCTCAGGCGACCGGGGCCACGTCGCTCTGGGGCAGCGAGGGGGAAACTGCCTTCATAATCATCGACTAG
G--TCGCGGCCTGCACTGCACTCCTGCGCTTCTGTTTCGATGTATCCATGTGCCATGCCTGCCCTGCTCGACGATTGGTG
AGGGTATTTTGCGCCTTTGCGTTGCTTCATTCAGTTACTGTCTTTGTCTTTCCATGTTTCGTGTCT-AAGTCTAATCTTG
TTCGGCCCCGAAATGGACGCCATCGTTGGTAGTA--GTACCTGGTAGTCGGTATGAGTCTGTATCTCTGTTCCTGTTGCC
ATCTTTCCCTGGAAC---------ATATTATGTATTGAACTGAACCAAATTTGATTCTGCATACCTGAAAACCAAAATAG
CATCCACCAAGCGTTCAAACAACAGTGCTCAAAACATGATGATGCTACCTAGTGCAAAGTGGAACAAGATTACGTTAGAC
CTAATGTTTATGCATTGAACTCCCCCTCCCCTCAAGGTTGATGAAACCTTGATATTAATCAAACGTGGAGGAGGATGCGT
TCCGCGTGAGTTAGA----TCCAGCGGGTAATTGCCGAGCCAGCAGGCAGTGCGATCCTGTAG-CCTAAGAACAGTAGCA
ATGATATGGCTACCCAAGTTTTGATTTCTAGGAGTTTTCCTAACGCTAATATCCCTCTCTCTCCATTGAGCAACACCTTT
ATCTCTGCCACCCGGGATGC-----------ATAATACGAGAGGTCAACATCCACGGACTGAATCATCGAGACTGCCTCA
GAGGTATCAGTTTAAGGGTCATCTGCACTGGTCGTACTAAGGGTCACAGCACACAGCTGTAA-GACCGCCAGGCCACCAC
CATGGTGATCACGCACTA-TCATACCAGATTACCAGTGTCCACTGTGCCATCAGCCGCCTGGAAAGAGCCATCGACGTTG
AGATTAACGTGATCTTCTGGCGGTGGC------ACCTGCGTCGACTTCCTCGTGAGTTTAGGTCCAAGGGGGGC------
-----------ATCAGCTTAACACCTTCTTTCCTCTGTCAAAATCTGCATGTAGAAATTGCTCGATGATTAGTAGCAAAT
CCACATGGCTGGCTAGGCC-------------------------------------------------------------
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-----------------------------------------------------------------TCGACGGTCAGCAGT
GCGATTCACCAACCTGATGTTTTTCCACCATCAAGGCTTCTCTTGCAGTTGCAGTTGCAG------GAAAAATGTGCGGG
CTTCAGAACCAGCCCACATATGGCTTCCAAACCAT---A---GGGTACACCATGTACAAGTTTGTACTACTACAA---AT
TTACTCATGATGGCAGTTTGGATAAATCAGAGTACCCTTGCGATTGGTAGGAGCTTAAAGGTCTGAAGAATGAAATT
>chr1D_503
CTCCTTGTCAGTAA------------------------------------------------------------------
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--------------------------------------AAAAAAGGTACACTGCATGCCCTTTTAACATACTTTATTTAA
CATATGTAGCCAATTCACATGAGGTA-AAAACATTTAATATTCAATAGCAATTAATTAGGTTAATTAAGGTTATGCCCTA
AAAAGAACTTTATATTAGTTAACAGGAACGACTAATAGCATGGTTGGAAATTAAGCATTTTTTTAGTCAAATTACATATA
AAAATTATTTTAATCCGAGTGACGGTTGCAC--------CATGATCATTTTAACATATTTTCTATAAATAATAAATACCA
GGGACCTAAACGGATTGAAAACAGAGTGAACTGGACCTACT-------AACGCGGAATACTAACCAGCGCCCAGGTGCCT
GCAACAGTGGCTACAGAAGTTGGGCTGAAGCCCAACAAATAAAGAGAAAGGAGAGGGATTTAATACTGGACCGCGGGTTA
TTTAAAAGGACACCAGGTTT-TTTTTATAAAATGTACGACAATGGATGAGCAGAAACACTCCATACTTATATATATATAC
ACACATTATTTGTGAAATACGTACATATTTATACATAAAAAATAGTATACTCAAAATATGATACATAGTACTTAACAAGT
ATTATATATACTACATAAACATTCTTATATACA-----------------------------------------------
ACATAGTACGCGTATATAAGGATCCCATAGCCAACACGTCATCCCATATATGTATTCTCTTTGTATTTTTAGTTTTTGAT
TGATTTAGTTTCCATGCAGGAAAGAGAGAGATTGCTTGGACCAATGCAAAAGGCTATTTCCTCTGTCTTACTCCATCTA-
TCCTTTATATAAGGTGTATTTTTTAAGATGCATT---------------------TTTTCTACTGGAACAATGCCCGTGC
GTTCCAACGGGATATAAATATTTTAGTATGTTAGTTTGTGAT---------------ATACGATTGTGTAAATAAATGTT
CATTAGATTCTGTCCGTGATTTATCTTATATTTTGGTCAGAATTGATTTACCTGCCCATAGTATGCGATTCTGTAAATAA
ATGTTCATTAAATTCTGCTTCTGATTTATCTTATATTCTGATCAG-----------------------------------
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---------------AATTTGGTAAGTAAATAAAAATGAAATTGATTTAGAAGGTAAATAAACTAAAGTGATTAATTATT
ATATGGGGAAGGTTGGAAGAATGATTGATGGGAAGAAAGATGAATCGGGAATTTTTAAGTAGTATAATAATATAGAGATT
TCTCATAATTCCGTCTTTAGACCTCAAAAAAAGAAAAAATATCTCTCTTCTGATTGCATGTATCTCTCATTGTATCGAAA
AAAGAAAGTATCTCTTTCGATTGTGTGTATTCTTTTCTTTCCTAGCCTAAATGATTTACTTGCTGCTAATGA-GTGATTT
AGTCAAGGTTAATTTCCTTCTAAATTATGTATAATTATGTGCATTATTCATCATGATCAAAATAATACACCTTACATATA
ACCAAAGGAATGGAGGGAGTATAATATGATATACTCCAG-----------------------------------------
------------------------TTTTTTATACAATTTTAGAGTATG------CTACTCCCTCCCCGTGCATA------
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-----------------------------------------------------------ATAGTCCCTCCATCTTTT-AT
GTAAGGTGTATAATTCTTAGGACGATGATTAAGGCATA----------AAATTAA----------------------CTT
TCGCTAAATCATTGATTAGTGGCAAGTAAATTATTTAGACTAGTAAAGTAAGAGATACACGCAATCGGGAGAAAGGTACT
TTGCTTT--TTTTCCTTTATAAAGAGAGATACATGCAATTAAAGGAGAGATACTTTTCTTTTTCTAGATGGCTAAAATCA
GATTTTGAGGAATTAGAAAAAATGCACCTTATATTATGAAATGAAATTTTATATAAAAAAAAGGATGCCGATAAGTGCCA
CACGTGTGAGTGTTAGGGGTCTGCCCACACATTTTGTGTGGTGTATAAGAGGAACAGCCCACACACCTACGTGTGGGCAA
AACAAGTAATGCCCACACACCTCTTTTTCCCCTCCCGATCCCTCTTACACGCGTGTGTGTGGGCGAAATAGATAACGCCC
ACACGCCCCGTACGTCAGGCCTCGTACCTCGTGGTCCCGCACGCCCCGCGTCACAGTCATCGCGCGTCCCGCAGTTGCCA
TGGTCCAGACCCTCGTCCATGTTCGTTTAACTGTAGTTGCCATGTCGGACAACTACAGTTGCCATGGTTGCTCACCTGCA
GTTGCCATGTATGGTCTGGTATACTGCAGTTGCCATGATTTGAAAATTTTAGGAGTTGCCACTCACTAACACTAGGCAGT
TGCCATGTAGCACTAAAAAAAGGCGTGGCAAAAAAACATGTTCGGGTAAAAGAGAGAGTTGCCATGTGCTCACAAACACG
CTAGGGCAGTTGCCATGTAAAGAAAAAGAGTTGTCATCTGCTTACGTGCACGCTAGGGCAGTTGCCATGTACCATGCAAA
AACACATGGCAACTCGGGTGAAAGAGAGTTGACATCTGCTTACAAGCAAAGCTAGGGCAGTTGCCATGTACCCTGCAGAA
ACACATGGCAACTGCCAGCTTTGGGTGTGGGCGAGTAGACGGGCGTGTGGGTGAAGTGATAAACACCCACACACCATCCC
CCTCTGCGTGCGTGAAAACTGGTGTGTGGGCGAATTGCTAAACGCCCACACACCAGCTCCAGTGTGGTAAAAAGGATGTG
TGGGCGACCGGATGAATGCCACGCACCATCTTAGTCCTATGTGGCACATAAAAACTGTTAGAACATGCCAAGATTCGTGC
ATAATTGATTGGACTAGGATCCATGCATGTGGACGAGTTGCCAGACGCCTACACGTGTGGGCGTTAGTGTTTTTGAAAAA
AAAATACACCTTAGG--AACGGAGGGAGGTGCAAGAGTATGA--------------------------------------
------GAAAGGGGGGAGTAATAAAAGATCGAGACGCTTGACGAT----------TAGAAAACATCGGGAAACCCCCTCC
CCGTGC---TCCAACTACCCCAAGCGCCGCCACTCCCACCGTACCGCGGCAATGCCGACGCCACGAAACCGGAAGGT---
---CCCTGCCCCTGCCCCGCCGCGCCGGCGGCCTCCCCGCCTGGAGTACCGCGCAAAGGACGGCGCGTGGTACGGCGCGC
GCATGGCGCTGCAGGGCGACTCGCTGCGCGTCATGTTCGAGGAATTCCGCGAGGAGTTCGACGAGTGGCACGACCCAAAC
ACGGCCGACCTCGCCTCCCCGGGCGACGTGACCGCGCTCCGCACCAGGTTCCGCCCGGCGAGCCCGCCCCTCGAGGACGC
CCGCTGCGGCGACCTCCGCCGCGGCCAGCTGCTCTGCGTCCTCCGCGCCATGTCCAACGGCGAGCGCAAGTACTACGACG
CCATCCTTGATTCCGTACGCCCTTCGCGCTGCGCCGTCCTCACTTCCTTCCA----CACGCATGTATGTTATGCTTTATC
AACAAGCGCCGACCAAATATGCAGGTGAAAAGAGCGGCTCACGTCACCGTGGGCGGCGAGGAGCGGTGCGCGTGCCGCTT
CACAGTGCGGTGGACGGACGGGCCGCTCCGCGGCGGCCTGGACGAGGTCGGCGTCGACGAGGTCTGCTGCGTGCGGGACT
CGCCGGTCAACGACCCGGTGCTGAGCGAGTTCCTGGACCGCGTGACGAGGTCGTTCGGCTTCGGCGACGGCGAGGAGAAC
GCGAAGGCGGTGCAGGACTCGCCGGTCCAGGAGCCGCGGCTAAACGAGTTCCTGGACCGCGTGACGAAATCGTTCGGCTA
CTGCAACGGCGAGGAGAAACCGAA---GGCGGCGCCTCAGGGGACCGGGGCCACGTTGCCCCCGGGCGGCGAGCAGAGCG
CGACGGCGGCCCCTCAGGCGACCGGGGCCACGTCGCTCTGCGGCGGCGAGGGGGAGACTGCCTTCATAATCATCGACTAG
G--TCGCGGCCTGCACTGCATTCCTGCGCTTCTGTTTCGATGTATCCATG-----TGCCTGCCCTGCTCGACGATTGGTG
AGGGTATTTCGTGCCTTCGCGTTGTTTCATTCAGTTACTGTCTTTGTCTT-CCTTGTTTCGTGTCT-ATGTCTAATCTTG
TTCGGCCCCGAAATGGACGCCATCGTTGGTAGTA--GTACTTGGTAGTCGGTGCGATTATGTATCTCTGTTCCTGTTGCC
ATCTTTCCCTGGAACCTGAAAGCCATATTATGCATTGAACTGAACTGAATTTGATTCTGTATACCTGAAAACCAAAATAG
CATCCACCAAGCGTTTAAATAACAGTGCTCAAAACATGGTGATGCTACCTAGTGCAAAGTGGAACAAGATTACATTAGAC
CTAATGTTTATGCATTGAAC---CCCTCCCCCCAAGGTTGATGAAACCTTGATATTAATCAAACGTGGAGGAGGATGCGT
TCCGCGTCAGTTAGTTAGCTCCAGCGGGTAATTGCCGAGCCAGCAGACAGTACGAGCCTGTAGACCTACGAACAGTAGCA
ATA--------ACCCAAGTTTTGGTTTCTAGGAATTTTCCTAACGCTAACATCCATCTCTCTCCATTGAGCAACACCTTT
ATCTCTGCAACCTGGGATGC-----------ATAACATGAGAGGTGAACATCCACGGACTGAATCATCGAGACTCCTCAA
GAGGTATCAGTTTAAGGGTCATCTGCACAGATCGTACCAAGGTT--CAGCACACAGCTGTAACGACCGCCAGGGCACCAC
CACGGTGATCACGCACTA-TCA--------TACCAGTGTCCACTGTGCCATCAGCCGCCTGGAAGGGGCCGTCGACGTTG
AGATTAATGTGATCTTCTGGCGGTGGCAGTGGCACCCGCATCGACTTCCTCGTGAGTTTAGGTCCAAGGGCGGTGGCGCC
CTTCGATATGTATCAGCTTAGCACCTTCTT-----TCC-----TCTGCATGTAGAAATTGCTCAATGATCAGTAGCAAAT
CCACATAGCTTTTCGATAAAGGGCGGATTTTCACACACCCGGCCTCTGCATAACTAGGATGCACACAACCAATACTAACA
CACACAAAAGCACACGCGGGCAAATAGCAAAGTCATATAAGACCTAAGCTATGCATATGCGAGGCAAAAAAATAAAACTA
AGTGATCAGATCCTTGATCGGCAAACTATAGGAAAGACCATATCCGCACCAACCATCTCATGACAACACGTGAACGACGA
GATTCTTCAACAGCAACGCCTTCACAAAAGGAGCAACGCTTAGGCGCCTGCGTCACCGGATCCAACCACCGAAGGATAGA
ATCTAGGTTTTCACCCTGAAGAAACGGTCCGAGCATATCCGAGCAATGCCTTCAACAAGGTAACGACGTATGAATGTCGC
CATTGCCAGGTATAACCAATTCGGGTCAAACCTGGGCTTTCACCCCGCAGCTCGATACTAGGTGCTCGAGAAGCACCACC
ATTGTAGTCATTCATGTGACGTCGCCACCACTTTTCCGCAATCCGAGCAGCTACACGCGGTACGAACGCTGCCGCTACAC
AACCATTCCTCTGCGTCAAGCCGCCATCCATAGTTTGCATCTCATCGCCGAAGCACCGAATTTGGAGAGATGAACCCTCA
CGAAGATTTCCAGTGGCCACAGCCGCCATGGAGCCGCAGGAGGTCAAAGCTACGTAGTTTGCATCCACCACCAAATAGGC
CAATCAAAATCTAGATCACCACCACCGCCTGAGCGCCCGTCCGCCGGCGAGGGGAGGCCAGACCGAAACAAGTGCTTGCC
CACCCGTGGGGATGCATGCAGCCATACGCTCTTGAACAATTCCACACATCGCTGGAACAAATCCATGGCCCTGGCCAGCG
GCATCACCCATCCAGCGCCCGTCTGGAGCAAATCCACATAGCTGGCTAGGAACTTCTTGGATCCTTCGACGGTCAGCAGT
GCGATTCACTAATCTGATGTTTTTCCATCATCAAGGCTTCTCTTACAGTTGCAGTTGCAGTTGCAGGACAAATGTGTGGG
CTTCAGAACCAACCCACATATGGCTTCCAAACCATACAA---GGGTACACCATGTACAAGTTTGTACTACTACTACAGAT
TTACTCATGAGGGCAGTTTGGGTAAGTCAGACTACCCTTGCGCCTGGCAGGAGCTTAAAAGTCTGAAGAATGAAATT
>SNPs
S-S-SS--SSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS--------------S-SS-----S-----------S------------------------
---------------------------------------------------------------S-----S----------
---SS-S-------------------------------------------------------S-----------------
---------------S----S--------------------S-------------------S------------------
--S-----------------------------S------------------S--S------S----------S----S-S
SS-SS--------------------S----------------------SS-----------------------S------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------S------------------------------------------------
----------------------S---------------------------------------------------------
---S-----S----S--------S--------------------------S--------------S--------------
-------------SSSSS--SSSS-S-S-S--SSSS-S-S----------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------S--------------------S---S-------------------
--------------S--S----------------------------------------S---------------------
--S--------S-------------S------S-----------S------S----S------------------S----
---S-------------S-----S----------------------------------------S-------S-------
------------------------------------------------------------------------------S-
--------------------------------------S-----------------------------------------
---------------------------------S--------S-----SS-SSS--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------S--------
--------------------------------------SSSSSSSSSS--------------------------------
---------------------S---S------------S---------------------------S-------------
--------------------------------------------------S-----S-----------S-----------
------------------------------------------S-----S-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------S---
-----------------------------S---S--SS------------------------------------------
--------S-------------------------------------SSSSSSSSS-------------------------
-----SSSS---------------S-------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------S--
----S---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------S-----------------------------SSSSS-------------------------
-S------------S----S------------------------------------------------------------
-------------------------S-------------S-----S----------------------------------
--------------------------------------------------------------S-----------------
----------S-----------------------------------S------------------------S--------
------------------------SSS-------S--------------------S------------------------
---------------------S--------------------------------S-------------------------
-SS-----------------------------------------------------------------------------
------------------------------------------------------------------S-------------
---------S------------------------SS------------------------------------S-------
-------------------------------------------S--------S---------------------------
-------------------------S----------------------------------S-------------------
--------------------------------------------------------S------------S----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------SSSSSSSSSSSSSSS-------------------------------------------------
--------------------------------------------------------------------------------
------------------S-------------------------------------------------------------
------------------------------------------S-------------------------------------
----------------------------------------------------------------------S---------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------------------------------------------------S
--------S-----------------------------------------------------------------------
---------------------------------------SSS--------------------------------------
-----------------------------------------------------------------------------
>forward_906
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------ATGGCTACAGAAGTTGGGCC------------------------------------------------------
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>reverse_5928
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-------GATCCAACCACCCCAAGGG------------------------------------------------------
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>forward_5849
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--------------------------------------------------------------------GGAGTGCACCAG
TATGAGGAG-----------------------------------------------------------------------
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>reverse_7226
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-------------------------CGCTCAAAACATGGTGATGCT----------------------------------
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-----------------------------------------------------------------------------
