Multiple sequence alignment - TraesCS1A01G234300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G234300 chr1A 100.000 2876 0 0 1 2876 409833868 409836743 0.000000e+00 5312.0
1 TraesCS1A01G234300 chr1B 90.748 1751 124 15 1146 2876 441632085 441630353 0.000000e+00 2302.0
2 TraesCS1A01G234300 chr1B 87.109 256 13 9 183 429 441654011 441653767 3.650000e-69 272.0
3 TraesCS1A01G234300 chr1B 92.638 163 5 3 1 163 441654151 441653996 8.020000e-56 228.0
4 TraesCS1A01G234300 chr1B 92.000 50 4 0 750 799 441653696 441653647 1.430000e-08 71.3
5 TraesCS1A01G234300 chr1B 100.000 30 0 0 1105 1134 441638282 441638253 4.000000e-04 56.5
6 TraesCS1A01G234300 chr1D 89.694 1145 71 25 903 2009 326969096 326967961 0.000000e+00 1417.0
7 TraesCS1A01G234300 chr1D 95.065 851 40 2 1997 2847 326967569 326966721 0.000000e+00 1338.0
8 TraesCS1A01G234300 chr1D 90.303 165 7 4 1 163 326969668 326969511 1.040000e-49 207.0
9 TraesCS1A01G234300 chr1D 87.574 169 14 3 183 350 326969526 326969364 3.780000e-44 189.0
10 TraesCS1A01G234300 chr5A 85.597 243 23 3 476 706 562386698 562386456 7.960000e-61 244.0
11 TraesCS1A01G234300 chr5A 81.897 232 30 3 479 700 693649433 693649662 4.890000e-43 185.0
12 TraesCS1A01G234300 chr5A 90.805 87 7 1 830 916 347461286 347461371 6.510000e-22 115.0
13 TraesCS1A01G234300 chr6A 84.348 230 21 3 480 699 199160777 199160553 8.070000e-51 211.0
14 TraesCS1A01G234300 chr5D 83.401 247 22 6 476 706 445106402 445106159 8.070000e-51 211.0
15 TraesCS1A01G234300 chr3D 83.830 235 24 3 480 701 418784966 418784733 8.070000e-51 211.0
16 TraesCS1A01G234300 chr3D 91.358 81 7 0 825 905 390197986 390198066 8.420000e-21 111.0
17 TraesCS1A01G234300 chr3A 82.833 233 25 7 479 700 515951806 515951578 8.130000e-46 195.0
18 TraesCS1A01G234300 chr6D 81.466 232 26 4 480 701 148175131 148175355 1.060000e-39 174.0
19 TraesCS1A01G234300 chr6D 100.000 30 0 0 671 700 154359063 154359092 4.000000e-04 56.5
20 TraesCS1A01G234300 chr2D 80.519 231 29 5 479 699 37625853 37626077 2.290000e-36 163.0
21 TraesCS1A01G234300 chr3B 94.737 76 4 0 830 905 519398292 519398367 5.030000e-23 119.0
22 TraesCS1A01G234300 chr3B 88.889 99 6 2 501 597 140401752 140401657 1.810000e-22 117.0
23 TraesCS1A01G234300 chr7B 88.542 96 9 2 816 909 3720724 3720629 6.510000e-22 115.0
24 TraesCS1A01G234300 chr7B 88.636 88 8 2 830 917 389007105 389007190 3.920000e-19 106.0
25 TraesCS1A01G234300 chr4A 94.595 74 4 0 830 903 648759560 648759487 6.510000e-22 115.0
26 TraesCS1A01G234300 chr2B 92.405 79 6 0 830 908 538631099 538631021 2.340000e-21 113.0
27 TraesCS1A01G234300 chr7A 87.912 91 7 3 818 904 569453262 569453352 1.410000e-18 104.0
28 TraesCS1A01G234300 chr2A 90.909 77 7 0 830 906 717955086 717955010 1.410000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G234300 chr1A 409833868 409836743 2875 False 5312.00 5312 100.000 1 2876 1 chr1A.!!$F1 2875
1 TraesCS1A01G234300 chr1B 441630353 441632085 1732 True 2302.00 2302 90.748 1146 2876 1 chr1B.!!$R1 1730
2 TraesCS1A01G234300 chr1D 326966721 326969668 2947 True 787.75 1417 90.659 1 2847 4 chr1D.!!$R1 2846

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
499 510 0.030369 GACGTCGATAACTGCCCGAT 59.970 55.0 0.00 0.0 34.71 4.18 F
527 538 0.033781 TGTAGTAACACCGCCCACAC 59.966 55.0 0.00 0.0 0.00 3.82 F
724 735 0.311790 AAATGGTTGCAGCACTGTCG 59.688 50.0 2.05 0.0 0.00 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1572 1606 0.318441 TCCAGTTCTTCACCTGCTCG 59.682 55.0 0.0 0.00 0.00 5.03 R
1869 1903 0.742281 CCAAGCCTCCGACTCATGTG 60.742 60.0 0.0 0.00 0.00 3.21 R
2699 3157 0.109132 GCCGTTTTGCATCAGAAGGG 60.109 55.0 0.0 4.95 36.83 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 57 4.215965 CGTAACCCTTTTTGTTCATGACG 58.784 43.478 0.00 0.00 0.00 4.35
87 90 1.271934 TCATGTGCCACCGGAAATTTG 59.728 47.619 9.46 0.00 0.00 2.32
90 93 1.543802 TGTGCCACCGGAAATTTGATC 59.456 47.619 9.46 0.00 0.00 2.92
99 102 4.037923 ACCGGAAATTTGATCATATGGTGC 59.962 41.667 9.46 0.00 0.00 5.01
116 119 0.390340 TGCGGCAGACTCTGAACATC 60.390 55.000 10.45 0.00 32.44 3.06
117 120 0.390340 GCGGCAGACTCTGAACATCA 60.390 55.000 10.45 0.00 32.44 3.07
119 122 1.731720 GGCAGACTCTGAACATCACC 58.268 55.000 10.45 0.00 32.44 4.02
131 134 4.058124 TGAACATCACCGATTATGCTAGC 58.942 43.478 8.10 8.10 0.00 3.42
132 135 4.202253 TGAACATCACCGATTATGCTAGCT 60.202 41.667 17.23 4.07 0.00 3.32
133 136 3.657634 ACATCACCGATTATGCTAGCTG 58.342 45.455 17.23 3.00 0.00 4.24
134 137 2.820059 TCACCGATTATGCTAGCTGG 57.180 50.000 17.23 10.20 0.00 4.85
135 138 1.151668 CACCGATTATGCTAGCTGGC 58.848 55.000 16.23 16.23 0.00 4.85
136 139 0.758734 ACCGATTATGCTAGCTGGCA 59.241 50.000 27.83 27.83 46.63 4.92
139 142 1.797046 CGATTATGCTAGCTGGCACTG 59.203 52.381 28.22 11.28 45.36 3.66
163 166 2.571653 AGATGGGTTAGCTGTGCAGTTA 59.428 45.455 0.00 0.00 0.00 2.24
164 167 3.200825 AGATGGGTTAGCTGTGCAGTTAT 59.799 43.478 0.00 0.00 0.00 1.89
165 168 3.433306 TGGGTTAGCTGTGCAGTTATT 57.567 42.857 0.00 0.00 0.00 1.40
166 169 3.761897 TGGGTTAGCTGTGCAGTTATTT 58.238 40.909 0.00 0.00 0.00 1.40
167 170 4.148838 TGGGTTAGCTGTGCAGTTATTTT 58.851 39.130 0.00 0.00 0.00 1.82
168 171 4.586841 TGGGTTAGCTGTGCAGTTATTTTT 59.413 37.500 0.00 0.00 0.00 1.94
188 191 1.310904 TTTTCCGTGTGGTGGTTAGC 58.689 50.000 0.00 0.00 36.30 3.09
189 192 0.470766 TTTCCGTGTGGTGGTTAGCT 59.529 50.000 0.00 0.00 36.30 3.32
190 193 0.250124 TTCCGTGTGGTGGTTAGCTG 60.250 55.000 0.00 0.00 36.30 4.24
191 194 1.070786 CCGTGTGGTGGTTAGCTGT 59.929 57.895 0.00 0.00 0.00 4.40
192 195 1.227999 CCGTGTGGTGGTTAGCTGTG 61.228 60.000 0.00 0.00 0.00 3.66
193 196 1.841663 CGTGTGGTGGTTAGCTGTGC 61.842 60.000 0.00 0.00 0.00 4.57
194 197 0.817634 GTGTGGTGGTTAGCTGTGCA 60.818 55.000 0.00 0.00 0.00 4.57
195 198 0.534877 TGTGGTGGTTAGCTGTGCAG 60.535 55.000 0.00 0.00 0.00 4.41
196 199 0.535102 GTGGTGGTTAGCTGTGCAGT 60.535 55.000 0.00 0.00 0.00 4.40
197 200 0.182537 TGGTGGTTAGCTGTGCAGTT 59.817 50.000 0.00 0.00 0.00 3.16
198 201 1.318576 GGTGGTTAGCTGTGCAGTTT 58.681 50.000 0.00 0.00 0.00 2.66
199 202 1.681264 GGTGGTTAGCTGTGCAGTTTT 59.319 47.619 0.00 0.00 0.00 2.43
200 203 2.882137 GGTGGTTAGCTGTGCAGTTTTA 59.118 45.455 0.00 0.00 0.00 1.52
221 224 0.308376 TACGTTTTTCAGCGTTGGGC 59.692 50.000 0.00 0.00 41.77 5.36
235 238 1.623311 GTTGGGCCTATTTGGTTTGCT 59.377 47.619 4.53 0.00 38.35 3.91
236 239 1.555967 TGGGCCTATTTGGTTTGCTC 58.444 50.000 4.53 0.00 38.35 4.26
237 240 0.455815 GGGCCTATTTGGTTTGCTCG 59.544 55.000 0.84 0.00 38.35 5.03
238 241 1.173913 GGCCTATTTGGTTTGCTCGT 58.826 50.000 0.00 0.00 38.35 4.18
276 279 2.757980 TAGCCAAGGTTCCGGTTGCC 62.758 60.000 0.00 2.11 0.00 4.52
279 282 1.830408 CAAGGTTCCGGTTGCCCAA 60.830 57.895 0.00 0.00 0.00 4.12
283 286 1.396607 GGTTCCGGTTGCCCAAGTTT 61.397 55.000 0.00 0.00 0.00 2.66
289 292 1.135517 CGGTTGCCCAAGTTTTATCCG 60.136 52.381 0.00 0.00 0.00 4.18
290 293 2.164338 GGTTGCCCAAGTTTTATCCGA 58.836 47.619 0.00 0.00 0.00 4.55
296 299 4.080243 TGCCCAAGTTTTATCCGAGGATTA 60.080 41.667 10.19 0.00 36.17 1.75
298 301 5.681639 CCCAAGTTTTATCCGAGGATTACT 58.318 41.667 10.19 8.72 36.17 2.24
299 302 5.758784 CCCAAGTTTTATCCGAGGATTACTC 59.241 44.000 10.19 0.42 43.02 2.59
300 303 6.408206 CCCAAGTTTTATCCGAGGATTACTCT 60.408 42.308 10.19 2.57 44.33 3.24
301 304 6.480320 CCAAGTTTTATCCGAGGATTACTCTG 59.520 42.308 10.19 11.02 44.33 3.35
302 305 7.265673 CAAGTTTTATCCGAGGATTACTCTGA 58.734 38.462 10.19 0.00 44.33 3.27
317 320 4.924305 ACTCTGAAAAATGCACATGTGT 57.076 36.364 26.01 5.88 0.00 3.72
320 323 3.803231 TCTGAAAAATGCACATGTGTTGC 59.197 39.130 26.01 13.39 0.00 4.17
323 326 1.868469 AAATGCACATGTGTTGCCAC 58.132 45.000 26.01 9.58 42.19 5.01
342 345 3.956199 CCACCATCTGGCAATTACTGAAT 59.044 43.478 0.00 0.00 39.32 2.57
345 348 5.125900 CACCATCTGGCAATTACTGAATCAA 59.874 40.000 0.00 0.00 39.32 2.57
346 349 5.716228 ACCATCTGGCAATTACTGAATCAAA 59.284 36.000 0.00 0.00 39.32 2.69
347 350 6.127535 ACCATCTGGCAATTACTGAATCAAAG 60.128 38.462 0.00 0.00 39.32 2.77
348 351 5.902613 TCTGGCAATTACTGAATCAAAGG 57.097 39.130 0.00 0.00 0.00 3.11
349 352 4.158394 TCTGGCAATTACTGAATCAAAGGC 59.842 41.667 0.00 0.00 0.00 4.35
350 353 4.088634 TGGCAATTACTGAATCAAAGGCT 58.911 39.130 0.00 0.00 0.00 4.58
351 354 5.260424 TGGCAATTACTGAATCAAAGGCTA 58.740 37.500 0.00 0.00 0.00 3.93
352 355 5.714333 TGGCAATTACTGAATCAAAGGCTAA 59.286 36.000 0.00 0.00 0.00 3.09
353 356 6.210385 TGGCAATTACTGAATCAAAGGCTAAA 59.790 34.615 0.00 0.00 0.00 1.85
354 357 7.093377 TGGCAATTACTGAATCAAAGGCTAAAT 60.093 33.333 0.00 0.00 0.00 1.40
355 358 7.765819 GGCAATTACTGAATCAAAGGCTAAATT 59.234 33.333 0.00 0.00 0.00 1.82
356 359 8.811378 GCAATTACTGAATCAAAGGCTAAATTC 58.189 33.333 8.63 8.63 0.00 2.17
360 363 7.765695 ACTGAATCAAAGGCTAAATTCTTCA 57.234 32.000 13.98 7.20 0.00 3.02
361 364 7.824672 ACTGAATCAAAGGCTAAATTCTTCAG 58.175 34.615 16.35 16.35 41.59 3.02
362 365 7.667219 ACTGAATCAAAGGCTAAATTCTTCAGA 59.333 33.333 21.17 3.85 39.42 3.27
363 366 7.820648 TGAATCAAAGGCTAAATTCTTCAGAC 58.179 34.615 13.98 0.00 0.00 3.51
364 367 7.448161 TGAATCAAAGGCTAAATTCTTCAGACA 59.552 33.333 13.98 0.00 0.00 3.41
365 368 7.951347 ATCAAAGGCTAAATTCTTCAGACAT 57.049 32.000 0.00 0.00 0.00 3.06
366 369 7.383102 TCAAAGGCTAAATTCTTCAGACATC 57.617 36.000 0.00 0.00 0.00 3.06
367 370 7.170965 TCAAAGGCTAAATTCTTCAGACATCT 58.829 34.615 0.00 0.00 0.00 2.90
368 371 8.321353 TCAAAGGCTAAATTCTTCAGACATCTA 58.679 33.333 0.00 0.00 0.00 1.98
369 372 8.394121 CAAAGGCTAAATTCTTCAGACATCTAC 58.606 37.037 0.00 0.00 0.00 2.59
370 373 7.430760 AGGCTAAATTCTTCAGACATCTACT 57.569 36.000 0.00 0.00 0.00 2.57
371 374 7.271511 AGGCTAAATTCTTCAGACATCTACTG 58.728 38.462 0.00 0.00 36.80 2.74
372 375 6.018343 GGCTAAATTCTTCAGACATCTACTGC 60.018 42.308 0.00 0.00 35.61 4.40
375 378 6.734104 AATTCTTCAGACATCTACTGCAAC 57.266 37.500 0.00 0.00 35.61 4.17
393 396 4.660938 GCGCACCCTTCCCTTGGT 62.661 66.667 0.30 0.00 34.40 3.67
397 400 0.392706 GCACCCTTCCCTTGGTTTTG 59.607 55.000 0.00 0.00 30.70 2.44
398 401 1.047801 CACCCTTCCCTTGGTTTTGG 58.952 55.000 0.00 0.00 30.70 3.28
399 402 0.639943 ACCCTTCCCTTGGTTTTGGT 59.360 50.000 0.00 0.00 0.00 3.67
402 405 3.310193 CCCTTCCCTTGGTTTTGGTAAA 58.690 45.455 0.00 0.00 0.00 2.01
405 408 4.202212 CCTTCCCTTGGTTTTGGTAAAGTG 60.202 45.833 0.00 0.00 0.00 3.16
406 409 4.252570 TCCCTTGGTTTTGGTAAAGTGA 57.747 40.909 0.00 0.00 0.00 3.41
407 410 4.810345 TCCCTTGGTTTTGGTAAAGTGAT 58.190 39.130 0.00 0.00 0.00 3.06
417 428 8.084073 GGTTTTGGTAAAGTGATTTAACCTACC 58.916 37.037 0.00 0.00 32.97 3.18
429 440 0.616891 AACCTACCGGGCCTTGTTAG 59.383 55.000 6.32 0.00 39.10 2.34
430 441 1.153229 CCTACCGGGCCTTGTTAGC 60.153 63.158 6.32 0.00 0.00 3.09
431 442 1.623542 CCTACCGGGCCTTGTTAGCT 61.624 60.000 6.32 0.00 0.00 3.32
432 443 0.462047 CTACCGGGCCTTGTTAGCTG 60.462 60.000 6.32 0.00 0.00 4.24
433 444 1.196104 TACCGGGCCTTGTTAGCTGT 61.196 55.000 6.32 0.00 0.00 4.40
434 445 1.303317 CCGGGCCTTGTTAGCTGTT 60.303 57.895 0.84 0.00 0.00 3.16
435 446 0.035820 CCGGGCCTTGTTAGCTGTTA 60.036 55.000 0.84 0.00 0.00 2.41
439 450 2.620627 GGGCCTTGTTAGCTGTTACCAT 60.621 50.000 0.84 0.00 0.00 3.55
455 466 7.522236 GCTGTTACCATCTTTTCTTAGTTTGCT 60.522 37.037 0.00 0.00 0.00 3.91
482 493 3.427161 GCATTGTTGCCTCATAAGGAC 57.573 47.619 0.00 0.00 46.67 3.85
483 494 2.223340 GCATTGTTGCCTCATAAGGACG 60.223 50.000 0.00 0.00 46.67 4.79
484 495 2.851263 TTGTTGCCTCATAAGGACGT 57.149 45.000 0.00 0.00 46.67 4.34
485 496 2.380084 TGTTGCCTCATAAGGACGTC 57.620 50.000 7.13 7.13 46.67 4.34
487 498 1.135199 GTTGCCTCATAAGGACGTCGA 60.135 52.381 9.92 0.00 46.67 4.20
488 499 1.399714 TGCCTCATAAGGACGTCGAT 58.600 50.000 9.92 3.06 46.67 3.59
489 500 2.578786 TGCCTCATAAGGACGTCGATA 58.421 47.619 9.92 5.43 46.67 2.92
490 501 2.953648 TGCCTCATAAGGACGTCGATAA 59.046 45.455 9.92 0.00 46.67 1.75
491 502 3.243301 TGCCTCATAAGGACGTCGATAAC 60.243 47.826 9.92 0.00 46.67 1.89
492 503 3.004524 GCCTCATAAGGACGTCGATAACT 59.995 47.826 9.92 0.00 46.67 2.24
493 504 4.537965 CCTCATAAGGACGTCGATAACTG 58.462 47.826 9.92 2.57 46.67 3.16
494 505 3.961182 TCATAAGGACGTCGATAACTGC 58.039 45.455 9.92 0.00 0.00 4.40
495 506 2.857592 TAAGGACGTCGATAACTGCC 57.142 50.000 9.92 0.00 0.00 4.85
498 509 1.430632 GACGTCGATAACTGCCCGA 59.569 57.895 0.00 0.00 0.00 5.14
499 510 0.030369 GACGTCGATAACTGCCCGAT 59.970 55.000 0.00 0.00 34.71 4.18
500 511 0.248907 ACGTCGATAACTGCCCGATG 60.249 55.000 0.00 0.00 42.87 3.84
502 513 1.209128 GTCGATAACTGCCCGATGTG 58.791 55.000 0.00 0.00 34.71 3.21
504 515 0.930310 CGATAACTGCCCGATGTGTG 59.070 55.000 0.00 0.00 0.00 3.82
511 522 4.952704 CCCGATGTGTGGCATGTA 57.047 55.556 0.00 0.00 38.06 2.29
513 524 0.107703 CCCGATGTGTGGCATGTAGT 60.108 55.000 0.00 0.00 38.06 2.73
514 525 1.138069 CCCGATGTGTGGCATGTAGTA 59.862 52.381 0.00 0.00 38.06 1.82
515 526 2.419436 CCCGATGTGTGGCATGTAGTAA 60.419 50.000 0.00 0.00 38.06 2.24
516 527 2.607635 CCGATGTGTGGCATGTAGTAAC 59.392 50.000 0.00 0.00 38.06 2.50
517 528 3.258228 CGATGTGTGGCATGTAGTAACA 58.742 45.455 0.00 0.00 38.06 2.41
518 529 3.062099 CGATGTGTGGCATGTAGTAACAC 59.938 47.826 0.00 3.40 38.78 3.32
519 530 2.773487 TGTGTGGCATGTAGTAACACC 58.227 47.619 12.60 0.00 40.28 4.16
520 531 1.730064 GTGTGGCATGTAGTAACACCG 59.270 52.381 0.00 0.00 38.78 4.94
521 532 0.725117 GTGGCATGTAGTAACACCGC 59.275 55.000 0.00 0.00 38.78 5.68
522 533 2.390427 GGCATGTAGTAACACCGCC 58.610 57.895 5.37 5.37 45.33 6.13
523 534 1.093496 GGCATGTAGTAACACCGCCC 61.093 60.000 8.81 0.00 45.56 6.13
524 535 0.391927 GCATGTAGTAACACCGCCCA 60.392 55.000 0.00 0.00 38.78 5.36
525 536 1.365699 CATGTAGTAACACCGCCCAC 58.634 55.000 0.00 0.00 38.78 4.61
526 537 0.978151 ATGTAGTAACACCGCCCACA 59.022 50.000 0.00 0.00 38.78 4.17
527 538 0.033781 TGTAGTAACACCGCCCACAC 59.966 55.000 0.00 0.00 0.00 3.82
528 539 1.010419 GTAGTAACACCGCCCACACG 61.010 60.000 0.00 0.00 0.00 4.49
529 540 1.462731 TAGTAACACCGCCCACACGT 61.463 55.000 0.00 0.00 0.00 4.49
530 541 1.888638 GTAACACCGCCCACACGTT 60.889 57.895 0.00 0.00 0.00 3.99
531 542 1.153208 TAACACCGCCCACACGTTT 60.153 52.632 0.00 0.00 0.00 3.60
532 543 0.747283 TAACACCGCCCACACGTTTT 60.747 50.000 0.00 0.00 0.00 2.43
533 544 1.596895 AACACCGCCCACACGTTTTT 61.597 50.000 0.00 0.00 0.00 1.94
554 565 7.789273 TTTTTACACTAAAGTTGTCATCCGA 57.211 32.000 0.00 0.00 0.00 4.55
555 566 7.789273 TTTTACACTAAAGTTGTCATCCGAA 57.211 32.000 0.00 0.00 0.00 4.30
556 567 7.789273 TTTACACTAAAGTTGTCATCCGAAA 57.211 32.000 0.00 0.00 0.00 3.46
557 568 7.789273 TTACACTAAAGTTGTCATCCGAAAA 57.211 32.000 0.00 0.00 0.00 2.29
558 569 6.687081 ACACTAAAGTTGTCATCCGAAAAA 57.313 33.333 0.00 0.00 0.00 1.94
595 606 6.375945 AAAACTGAAATTTGCCATCCAAAC 57.624 33.333 0.00 0.00 45.52 2.93
596 607 4.686191 ACTGAAATTTGCCATCCAAACA 57.314 36.364 0.00 0.00 45.52 2.83
597 608 4.634199 ACTGAAATTTGCCATCCAAACAG 58.366 39.130 0.00 0.00 45.52 3.16
598 609 4.101430 ACTGAAATTTGCCATCCAAACAGT 59.899 37.500 0.00 0.00 45.52 3.55
599 610 4.378774 TGAAATTTGCCATCCAAACAGTG 58.621 39.130 0.00 0.00 45.52 3.66
600 611 2.460757 ATTTGCCATCCAAACAGTGC 57.539 45.000 0.00 0.00 45.52 4.40
601 612 1.412079 TTTGCCATCCAAACAGTGCT 58.588 45.000 0.00 0.00 38.46 4.40
602 613 1.412079 TTGCCATCCAAACAGTGCTT 58.588 45.000 0.00 0.00 0.00 3.91
603 614 0.961019 TGCCATCCAAACAGTGCTTC 59.039 50.000 0.00 0.00 0.00 3.86
604 615 0.961019 GCCATCCAAACAGTGCTTCA 59.039 50.000 0.00 0.00 0.00 3.02
605 616 1.336240 GCCATCCAAACAGTGCTTCAC 60.336 52.381 0.00 0.00 34.10 3.18
606 617 1.955778 CCATCCAAACAGTGCTTCACA 59.044 47.619 0.00 0.00 36.74 3.58
607 618 2.361757 CCATCCAAACAGTGCTTCACAA 59.638 45.455 0.00 0.00 36.74 3.33
608 619 3.374745 CATCCAAACAGTGCTTCACAAC 58.625 45.455 0.00 0.00 36.74 3.32
609 620 2.722094 TCCAAACAGTGCTTCACAACT 58.278 42.857 0.00 0.00 36.74 3.16
610 621 3.879998 TCCAAACAGTGCTTCACAACTA 58.120 40.909 0.00 0.00 36.74 2.24
611 622 4.265893 TCCAAACAGTGCTTCACAACTAA 58.734 39.130 0.00 0.00 36.74 2.24
612 623 4.702612 TCCAAACAGTGCTTCACAACTAAA 59.297 37.500 0.00 0.00 36.74 1.85
613 624 5.184096 TCCAAACAGTGCTTCACAACTAAAA 59.816 36.000 0.00 0.00 36.74 1.52
614 625 6.042143 CCAAACAGTGCTTCACAACTAAAAT 58.958 36.000 0.00 0.00 36.74 1.82
615 626 6.534793 CCAAACAGTGCTTCACAACTAAAATT 59.465 34.615 0.00 0.00 36.74 1.82
616 627 7.393327 CAAACAGTGCTTCACAACTAAAATTG 58.607 34.615 0.00 0.00 36.74 2.32
617 628 6.207691 ACAGTGCTTCACAACTAAAATTGT 57.792 33.333 0.00 0.00 43.67 2.71
618 629 6.265577 ACAGTGCTTCACAACTAAAATTGTC 58.734 36.000 0.00 0.00 40.89 3.18
619 630 6.127758 ACAGTGCTTCACAACTAAAATTGTCA 60.128 34.615 0.00 0.00 40.89 3.58
620 631 6.919662 CAGTGCTTCACAACTAAAATTGTCAT 59.080 34.615 0.00 0.00 40.89 3.06
621 632 7.113965 CAGTGCTTCACAACTAAAATTGTCATC 59.886 37.037 0.00 0.00 40.89 2.92
622 633 6.363357 GTGCTTCACAACTAAAATTGTCATCC 59.637 38.462 0.00 0.00 40.89 3.51
623 634 6.040278 TGCTTCACAACTAAAATTGTCATCCA 59.960 34.615 0.00 0.00 40.89 3.41
624 635 6.583806 GCTTCACAACTAAAATTGTCATCCAG 59.416 38.462 0.00 0.00 40.89 3.86
625 636 7.581213 TTCACAACTAAAATTGTCATCCAGT 57.419 32.000 0.00 0.00 40.89 4.00
626 637 7.581213 TCACAACTAAAATTGTCATCCAGTT 57.419 32.000 0.00 0.00 40.89 3.16
627 638 7.424803 TCACAACTAAAATTGTCATCCAGTTG 58.575 34.615 9.37 9.37 40.89 3.16
628 639 7.346751 ACAACTAAAATTGTCATCCAGTTGT 57.653 32.000 10.50 10.50 45.79 3.32
631 642 9.180678 CAACTAAAATTGTCATCCAGTTGTAAC 57.819 33.333 0.00 0.00 37.61 2.50
632 643 8.691661 ACTAAAATTGTCATCCAGTTGTAACT 57.308 30.769 0.00 0.00 40.60 2.24
633 644 9.787435 ACTAAAATTGTCATCCAGTTGTAACTA 57.213 29.630 0.00 0.00 37.08 2.24
636 647 9.965824 AAAATTGTCATCCAGTTGTAACTAAAG 57.034 29.630 0.00 0.00 37.08 1.85
637 648 6.554334 TTGTCATCCAGTTGTAACTAAAGC 57.446 37.500 0.00 0.00 37.08 3.51
638 649 5.865085 TGTCATCCAGTTGTAACTAAAGCT 58.135 37.500 0.00 0.00 37.08 3.74
639 650 5.700832 TGTCATCCAGTTGTAACTAAAGCTG 59.299 40.000 0.00 0.00 37.08 4.24
640 651 5.701290 GTCATCCAGTTGTAACTAAAGCTGT 59.299 40.000 0.00 0.00 37.08 4.40
641 652 5.932303 TCATCCAGTTGTAACTAAAGCTGTC 59.068 40.000 0.00 0.00 37.08 3.51
642 653 5.284861 TCCAGTTGTAACTAAAGCTGTCA 57.715 39.130 0.00 0.00 37.08 3.58
643 654 5.865085 TCCAGTTGTAACTAAAGCTGTCAT 58.135 37.500 0.00 0.00 37.08 3.06
644 655 5.932303 TCCAGTTGTAACTAAAGCTGTCATC 59.068 40.000 0.00 0.00 37.08 2.92
645 656 5.700832 CCAGTTGTAACTAAAGCTGTCATCA 59.299 40.000 0.00 0.00 37.08 3.07
646 657 6.204688 CCAGTTGTAACTAAAGCTGTCATCAA 59.795 38.462 0.00 0.00 37.08 2.57
647 658 7.255104 CCAGTTGTAACTAAAGCTGTCATCAAA 60.255 37.037 0.00 0.00 37.08 2.69
648 659 8.128582 CAGTTGTAACTAAAGCTGTCATCAAAA 58.871 33.333 0.00 0.00 37.08 2.44
649 660 8.682710 AGTTGTAACTAAAGCTGTCATCAAAAA 58.317 29.630 0.00 0.00 37.52 1.94
671 682 8.649973 AAAAACGTGTAGGCAAAATTATTTCA 57.350 26.923 0.00 0.00 0.00 2.69
672 683 8.825667 AAAACGTGTAGGCAAAATTATTTCAT 57.174 26.923 0.00 0.00 0.00 2.57
673 684 7.810766 AACGTGTAGGCAAAATTATTTCATG 57.189 32.000 0.00 0.00 0.00 3.07
674 685 6.919721 ACGTGTAGGCAAAATTATTTCATGT 58.080 32.000 0.00 0.00 0.00 3.21
675 686 7.027161 ACGTGTAGGCAAAATTATTTCATGTC 58.973 34.615 0.00 0.00 0.00 3.06
676 687 7.026562 CGTGTAGGCAAAATTATTTCATGTCA 58.973 34.615 0.00 0.00 0.00 3.58
677 688 7.008266 CGTGTAGGCAAAATTATTTCATGTCAC 59.992 37.037 0.00 0.00 0.00 3.67
678 689 7.812191 GTGTAGGCAAAATTATTTCATGTCACA 59.188 33.333 0.00 0.00 0.00 3.58
679 690 8.530311 TGTAGGCAAAATTATTTCATGTCACAT 58.470 29.630 0.00 0.00 0.00 3.21
680 691 7.837202 AGGCAAAATTATTTCATGTCACATG 57.163 32.000 11.96 11.96 0.00 3.21
681 692 7.388437 AGGCAAAATTATTTCATGTCACATGT 58.612 30.769 17.51 1.05 0.00 3.21
682 693 7.332430 AGGCAAAATTATTTCATGTCACATGTG 59.668 33.333 20.18 20.18 0.00 3.21
683 694 7.118101 GGCAAAATTATTTCATGTCACATGTGT 59.882 33.333 24.63 3.51 0.00 3.72
684 695 7.953173 GCAAAATTATTTCATGTCACATGTGTG 59.047 33.333 24.63 16.03 46.91 3.82
685 696 8.436970 CAAAATTATTTCATGTCACATGTGTGG 58.563 33.333 24.63 12.81 45.65 4.17
686 697 7.465353 AATTATTTCATGTCACATGTGTGGA 57.535 32.000 24.63 14.71 45.65 4.02
687 698 4.771590 ATTTCATGTCACATGTGTGGAC 57.228 40.909 24.63 16.21 45.65 4.02
688 699 1.794512 TCATGTCACATGTGTGGACG 58.205 50.000 24.63 11.30 45.65 4.79
689 700 1.069978 TCATGTCACATGTGTGGACGT 59.930 47.619 24.63 14.37 45.65 4.34
690 701 1.872952 CATGTCACATGTGTGGACGTT 59.127 47.619 24.63 5.80 45.65 3.99
691 702 2.892784 TGTCACATGTGTGGACGTTA 57.107 45.000 24.63 0.35 45.65 3.18
692 703 3.394674 TGTCACATGTGTGGACGTTAT 57.605 42.857 24.63 0.00 45.65 1.89
693 704 3.322369 TGTCACATGTGTGGACGTTATC 58.678 45.455 24.63 5.43 45.65 1.75
694 705 3.243907 TGTCACATGTGTGGACGTTATCA 60.244 43.478 24.63 0.00 45.65 2.15
695 706 3.932710 GTCACATGTGTGGACGTTATCAT 59.067 43.478 24.63 0.00 45.65 2.45
696 707 4.391830 GTCACATGTGTGGACGTTATCATT 59.608 41.667 24.63 0.00 45.65 2.57
697 708 5.000591 TCACATGTGTGGACGTTATCATTT 58.999 37.500 24.63 0.00 45.65 2.32
698 709 5.088068 CACATGTGTGGACGTTATCATTTG 58.912 41.667 18.03 0.00 42.10 2.32
699 710 4.155826 ACATGTGTGGACGTTATCATTTGG 59.844 41.667 0.00 0.00 0.00 3.28
700 711 3.078097 TGTGTGGACGTTATCATTTGGG 58.922 45.455 0.00 0.00 0.00 4.12
701 712 2.422127 GTGTGGACGTTATCATTTGGGG 59.578 50.000 0.00 0.00 0.00 4.96
702 713 2.306219 TGTGGACGTTATCATTTGGGGA 59.694 45.455 0.00 0.00 0.00 4.81
703 714 3.244946 TGTGGACGTTATCATTTGGGGAA 60.245 43.478 0.00 0.00 0.00 3.97
704 715 3.759618 GTGGACGTTATCATTTGGGGAAA 59.240 43.478 0.00 0.00 0.00 3.13
705 716 4.218852 GTGGACGTTATCATTTGGGGAAAA 59.781 41.667 0.00 0.00 0.00 2.29
706 717 4.833380 TGGACGTTATCATTTGGGGAAAAA 59.167 37.500 0.00 0.00 0.00 1.94
722 733 2.985957 AAAAATGGTTGCAGCACTGT 57.014 40.000 2.05 0.00 0.00 3.55
723 734 2.514205 AAAATGGTTGCAGCACTGTC 57.486 45.000 2.05 0.00 0.00 3.51
724 735 0.311790 AAATGGTTGCAGCACTGTCG 59.688 50.000 2.05 0.00 0.00 4.35
725 736 2.133742 AATGGTTGCAGCACTGTCGC 62.134 55.000 2.05 0.00 0.00 5.19
726 737 2.974698 GGTTGCAGCACTGTCGCT 60.975 61.111 2.05 0.00 45.21 4.93
735 746 3.045601 AGCACTGTCGCTGATTTTAGT 57.954 42.857 4.36 0.00 41.85 2.24
736 747 4.188247 AGCACTGTCGCTGATTTTAGTA 57.812 40.909 4.36 0.00 41.85 1.82
737 748 3.927142 AGCACTGTCGCTGATTTTAGTAC 59.073 43.478 4.36 0.00 41.85 2.73
738 749 3.678072 GCACTGTCGCTGATTTTAGTACA 59.322 43.478 0.00 0.00 0.00 2.90
739 750 4.151689 GCACTGTCGCTGATTTTAGTACAA 59.848 41.667 0.00 0.00 0.00 2.41
740 751 5.163854 GCACTGTCGCTGATTTTAGTACAAT 60.164 40.000 0.00 0.00 0.00 2.71
741 752 6.243551 CACTGTCGCTGATTTTAGTACAATG 58.756 40.000 0.00 0.00 0.00 2.82
742 753 5.932303 ACTGTCGCTGATTTTAGTACAATGT 59.068 36.000 0.00 0.00 0.00 2.71
743 754 6.426937 ACTGTCGCTGATTTTAGTACAATGTT 59.573 34.615 0.00 0.00 0.00 2.71
744 755 6.598525 TGTCGCTGATTTTAGTACAATGTTG 58.401 36.000 0.00 0.00 0.00 3.33
745 756 6.203915 TGTCGCTGATTTTAGTACAATGTTGT 59.796 34.615 3.64 3.64 44.86 3.32
746 757 7.385478 TGTCGCTGATTTTAGTACAATGTTGTA 59.615 33.333 1.62 1.62 42.35 2.41
759 770 5.985781 ACAATGTTGTACGAAACTAAGCAG 58.014 37.500 0.00 0.00 40.16 4.24
762 773 4.053295 TGTTGTACGAAACTAAGCAGACC 58.947 43.478 0.00 0.00 0.00 3.85
784 795 2.802816 AGTCAGACAAGCACGATTTCAC 59.197 45.455 2.66 0.00 0.00 3.18
787 798 3.002246 TCAGACAAGCACGATTTCACAAC 59.998 43.478 0.00 0.00 0.00 3.32
790 801 1.336440 CAAGCACGATTTCACAACCCA 59.664 47.619 0.00 0.00 0.00 4.51
791 802 1.909700 AGCACGATTTCACAACCCAT 58.090 45.000 0.00 0.00 0.00 4.00
793 804 3.417101 AGCACGATTTCACAACCCATTA 58.583 40.909 0.00 0.00 0.00 1.90
794 805 3.190535 AGCACGATTTCACAACCCATTAC 59.809 43.478 0.00 0.00 0.00 1.89
795 806 3.672241 GCACGATTTCACAACCCATTACC 60.672 47.826 0.00 0.00 0.00 2.85
796 807 3.504134 CACGATTTCACAACCCATTACCA 59.496 43.478 0.00 0.00 0.00 3.25
798 809 4.157656 ACGATTTCACAACCCATTACCATG 59.842 41.667 0.00 0.00 0.00 3.66
800 811 5.650543 GATTTCACAACCCATTACCATGTC 58.349 41.667 0.00 0.00 0.00 3.06
801 812 3.797559 TCACAACCCATTACCATGTCA 57.202 42.857 0.00 0.00 0.00 3.58
802 813 4.105754 TCACAACCCATTACCATGTCAA 57.894 40.909 0.00 0.00 0.00 3.18
805 816 4.280677 CACAACCCATTACCATGTCAAACT 59.719 41.667 0.00 0.00 0.00 2.66
807 818 5.710099 ACAACCCATTACCATGTCAAACTAG 59.290 40.000 0.00 0.00 0.00 2.57
808 819 4.270008 ACCCATTACCATGTCAAACTAGC 58.730 43.478 0.00 0.00 0.00 3.42
809 820 3.632145 CCCATTACCATGTCAAACTAGCC 59.368 47.826 0.00 0.00 0.00 3.93
810 821 3.632145 CCATTACCATGTCAAACTAGCCC 59.368 47.826 0.00 0.00 0.00 5.19
811 822 4.269183 CATTACCATGTCAAACTAGCCCA 58.731 43.478 0.00 0.00 0.00 5.36
812 823 2.496899 ACCATGTCAAACTAGCCCAG 57.503 50.000 0.00 0.00 0.00 4.45
813 824 1.004745 ACCATGTCAAACTAGCCCAGG 59.995 52.381 0.00 0.00 0.00 4.45
814 825 1.004745 CCATGTCAAACTAGCCCAGGT 59.995 52.381 0.00 0.00 0.00 4.00
815 826 2.359900 CATGTCAAACTAGCCCAGGTC 58.640 52.381 0.00 0.00 0.00 3.85
818 829 2.152016 GTCAAACTAGCCCAGGTCAAC 58.848 52.381 0.00 0.00 0.00 3.18
819 830 1.771854 TCAAACTAGCCCAGGTCAACA 59.228 47.619 0.00 0.00 0.00 3.33
820 831 2.173782 TCAAACTAGCCCAGGTCAACAA 59.826 45.455 0.00 0.00 0.00 2.83
821 832 2.554032 CAAACTAGCCCAGGTCAACAAG 59.446 50.000 0.00 0.00 0.00 3.16
822 833 1.435256 ACTAGCCCAGGTCAACAAGT 58.565 50.000 0.00 0.00 0.00 3.16
823 834 2.616524 ACTAGCCCAGGTCAACAAGTA 58.383 47.619 0.00 0.00 0.00 2.24
824 835 2.302157 ACTAGCCCAGGTCAACAAGTAC 59.698 50.000 0.00 0.00 0.00 2.73
825 836 1.435256 AGCCCAGGTCAACAAGTACT 58.565 50.000 0.00 0.00 0.00 2.73
826 837 1.348036 AGCCCAGGTCAACAAGTACTC 59.652 52.381 0.00 0.00 0.00 2.59
827 838 1.610886 GCCCAGGTCAACAAGTACTCC 60.611 57.143 0.00 0.00 0.00 3.85
828 839 1.003233 CCCAGGTCAACAAGTACTCCC 59.997 57.143 0.00 0.00 0.00 4.30
830 841 3.170717 CCAGGTCAACAAGTACTCCCTA 58.829 50.000 0.00 0.00 0.00 3.53
831 842 3.581332 CCAGGTCAACAAGTACTCCCTAA 59.419 47.826 0.00 0.00 0.00 2.69
832 843 4.041198 CCAGGTCAACAAGTACTCCCTAAA 59.959 45.833 0.00 0.00 0.00 1.85
833 844 4.995487 CAGGTCAACAAGTACTCCCTAAAC 59.005 45.833 0.00 0.00 0.00 2.01
835 846 6.014840 CAGGTCAACAAGTACTCCCTAAACTA 60.015 42.308 0.00 0.00 0.00 2.24
836 847 6.556116 AGGTCAACAAGTACTCCCTAAACTAA 59.444 38.462 0.00 0.00 0.00 2.24
837 848 7.237055 AGGTCAACAAGTACTCCCTAAACTAAT 59.763 37.037 0.00 0.00 0.00 1.73
909 925 2.338577 TACGGAGGGAGTACTACTGC 57.661 55.000 4.77 6.77 35.67 4.40
933 949 2.034687 GTGCATGACCCAGTGCCT 59.965 61.111 0.00 0.00 40.56 4.75
994 1021 4.136517 TCTTTCGCCGTTGTCAAATAAC 57.863 40.909 0.00 0.00 0.00 1.89
998 1025 1.727857 CGCCGTTGTCAAATAACCTGC 60.728 52.381 0.00 0.00 0.00 4.85
1069 1103 2.594119 CTACGGCAGGTTCGTCTCCG 62.594 65.000 0.00 0.00 45.04 4.63
1134 1168 1.293498 GGAGCTCGTCTTGCTTCCA 59.707 57.895 7.83 0.00 41.30 3.53
1135 1169 0.739112 GGAGCTCGTCTTGCTTCCAG 60.739 60.000 7.83 0.00 41.30 3.86
1143 1177 1.676967 CTTGCTTCCAGCCCAGTCC 60.677 63.158 0.00 0.00 41.51 3.85
1237 1271 1.805945 CGCGCAGACAACCTCTACC 60.806 63.158 8.75 0.00 0.00 3.18
1290 1324 3.701454 GAGTTCCTCGGTGGCTCT 58.299 61.111 0.00 0.00 35.26 4.09
1293 1327 0.968393 AGTTCCTCGGTGGCTCTCTC 60.968 60.000 0.00 0.00 35.26 3.20
1299 1333 2.780094 CGGTGGCTCTCTCATCGCT 61.780 63.158 0.00 0.00 31.88 4.93
1790 1824 3.368571 GCTGCAGGACAAGCACCC 61.369 66.667 17.12 0.00 37.02 4.61
1882 1919 2.202797 CCGGCACATGAGTCGGAG 60.203 66.667 29.12 4.66 44.69 4.63
1883 1920 2.202797 CGGCACATGAGTCGGAGG 60.203 66.667 9.41 0.00 0.00 4.30
1884 1921 2.512515 GGCACATGAGTCGGAGGC 60.513 66.667 0.00 0.00 0.00 4.70
1886 1923 1.078848 GCACATGAGTCGGAGGCTT 60.079 57.895 0.00 0.00 45.33 4.35
1919 1973 9.839185 AGCTCTTTCCTATACCTGGTATATTTA 57.161 33.333 23.21 11.41 31.68 1.40
1954 2008 5.380900 TGAAATGTGACCCATGTTACAGAA 58.619 37.500 0.00 0.00 43.27 3.02
1960 2014 6.539173 TGTGACCCATGTTACAGAAGTTATT 58.461 36.000 0.00 0.00 36.20 1.40
1964 2018 6.415573 ACCCATGTTACAGAAGTTATTCTCC 58.584 40.000 0.00 0.00 44.15 3.71
1972 2026 6.540438 ACAGAAGTTATTCTCCGGTAATGA 57.460 37.500 0.00 0.00 44.15 2.57
2137 2595 2.201732 CCCGTGTTAAGATCATGGACG 58.798 52.381 4.72 0.00 42.63 4.79
2156 2614 2.493273 GAATTCCTGGGGCCCGAACA 62.493 60.000 19.83 7.46 0.00 3.18
2184 2642 2.507102 CGTCTCGCGGTTGCATCT 60.507 61.111 6.13 0.00 42.97 2.90
2194 2652 1.881925 CGGTTGCATCTTTCCTCCACA 60.882 52.381 0.00 0.00 0.00 4.17
2220 2678 3.056107 TGTTTCTCGATCATCTTCGGGTT 60.056 43.478 0.00 0.00 40.51 4.11
2251 2709 8.474025 ACTCTTAGTTCTCTTGTTATGATGAGG 58.526 37.037 0.00 0.00 0.00 3.86
2385 2843 6.348132 CCACTTGCGTGAACATTCTACATTTA 60.348 38.462 0.00 0.00 43.97 1.40
2418 2876 0.389948 AGCTTTCGGCAGTAACTCCG 60.390 55.000 2.88 2.88 46.52 4.63
2430 2888 1.664151 GTAACTCCGCTTGGTATGTGC 59.336 52.381 0.00 0.00 0.00 4.57
2460 2918 0.523072 CAGTGGCACCATTTCTTCGG 59.477 55.000 15.27 0.00 0.00 4.30
2471 2929 4.760204 ACCATTTCTTCGGTCTCGATTTTT 59.240 37.500 0.00 0.00 45.51 1.94
2473 2931 6.428771 ACCATTTCTTCGGTCTCGATTTTTAA 59.571 34.615 0.00 0.00 45.51 1.52
2486 2944 8.508875 GTCTCGATTTTTAAATTCACTGGGTAA 58.491 33.333 0.00 0.00 0.00 2.85
2487 2945 8.508875 TCTCGATTTTTAAATTCACTGGGTAAC 58.491 33.333 0.00 0.00 0.00 2.50
2529 2987 8.087750 TCATTGTCATCCAAGTGAAAATTAACC 58.912 33.333 0.00 0.00 34.56 2.85
2593 3051 0.036388 CGCCTGGAAGCTTTGGTAGA 60.036 55.000 0.00 0.00 0.00 2.59
2615 3073 9.202273 GTAGATTTAGAGTTAGCCATTCTGATG 57.798 37.037 0.00 0.00 0.00 3.07
2629 3087 6.682113 GCCATTCTGATGTGAAGCATTGTTAT 60.682 38.462 0.00 0.00 38.06 1.89
2677 3135 6.519382 TCCATTCTAGTATCAAGCATCACAG 58.481 40.000 0.00 0.00 0.00 3.66
2689 3147 3.350833 AGCATCACAGGGAAAAGATCAC 58.649 45.455 0.00 0.00 0.00 3.06
2690 3148 3.084039 GCATCACAGGGAAAAGATCACA 58.916 45.455 0.00 0.00 32.04 3.58
2697 3155 6.262273 TCACAGGGAAAAGATCACAGTAAAAC 59.738 38.462 0.00 0.00 28.78 2.43
2698 3156 6.039270 CACAGGGAAAAGATCACAGTAAAACA 59.961 38.462 0.00 0.00 28.78 2.83
2699 3157 6.039382 ACAGGGAAAAGATCACAGTAAAACAC 59.961 38.462 0.00 0.00 27.88 3.32
2715 3173 3.733443 AACACCCTTCTGATGCAAAAC 57.267 42.857 0.00 0.00 0.00 2.43
2716 3174 1.608590 ACACCCTTCTGATGCAAAACG 59.391 47.619 0.00 0.00 0.00 3.60
2729 3187 2.887783 TGCAAAACGGCATAAGGAGAAA 59.112 40.909 0.00 0.00 39.25 2.52
2809 3267 7.524717 TCTCCAGAAAACTAAATGAAAAGGG 57.475 36.000 0.00 0.00 0.00 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 57 5.807011 GGTGGCACATGAATACAGAAAAATC 59.193 40.000 20.82 0.00 44.52 2.17
87 90 1.151668 GTCTGCCGCACCATATGATC 58.848 55.000 3.65 0.00 0.00 2.92
90 93 0.105593 AGAGTCTGCCGCACCATATG 59.894 55.000 0.00 0.00 0.00 1.78
99 102 1.354040 GTGATGTTCAGAGTCTGCCG 58.646 55.000 15.72 0.00 0.00 5.69
116 119 1.151668 GCCAGCTAGCATAATCGGTG 58.848 55.000 18.83 3.29 0.00 4.94
117 120 0.758734 TGCCAGCTAGCATAATCGGT 59.241 50.000 18.83 0.00 38.00 4.69
119 122 1.797046 CAGTGCCAGCTAGCATAATCG 59.203 52.381 18.83 0.00 46.24 3.34
131 134 2.439701 CCCATCTGCCAGTGCCAG 60.440 66.667 0.00 0.00 36.33 4.85
132 135 1.496444 TAACCCATCTGCCAGTGCCA 61.496 55.000 0.00 0.00 36.33 4.92
133 136 0.749454 CTAACCCATCTGCCAGTGCC 60.749 60.000 0.00 0.00 36.33 5.01
134 137 1.379642 GCTAACCCATCTGCCAGTGC 61.380 60.000 0.00 0.00 38.26 4.40
135 138 0.254178 AGCTAACCCATCTGCCAGTG 59.746 55.000 0.00 0.00 0.00 3.66
136 139 0.254178 CAGCTAACCCATCTGCCAGT 59.746 55.000 0.00 0.00 0.00 4.00
139 142 1.379642 GCACAGCTAACCCATCTGCC 61.380 60.000 0.00 0.00 0.00 4.85
145 148 3.433306 AATAACTGCACAGCTAACCCA 57.567 42.857 0.00 0.00 0.00 4.51
168 171 1.677052 GCTAACCACCACACGGAAAAA 59.323 47.619 0.00 0.00 35.59 1.94
169 172 1.134037 AGCTAACCACCACACGGAAAA 60.134 47.619 0.00 0.00 35.59 2.29
170 173 0.470766 AGCTAACCACCACACGGAAA 59.529 50.000 0.00 0.00 35.59 3.13
171 174 0.250124 CAGCTAACCACCACACGGAA 60.250 55.000 0.00 0.00 35.59 4.30
172 175 1.369692 CAGCTAACCACCACACGGA 59.630 57.895 0.00 0.00 35.59 4.69
173 176 1.070786 ACAGCTAACCACCACACGG 59.929 57.895 0.00 0.00 38.77 4.94
174 177 1.841663 GCACAGCTAACCACCACACG 61.842 60.000 0.00 0.00 0.00 4.49
175 178 0.817634 TGCACAGCTAACCACCACAC 60.818 55.000 0.00 0.00 0.00 3.82
176 179 0.534877 CTGCACAGCTAACCACCACA 60.535 55.000 0.00 0.00 0.00 4.17
177 180 0.535102 ACTGCACAGCTAACCACCAC 60.535 55.000 0.00 0.00 0.00 4.16
178 181 0.182537 AACTGCACAGCTAACCACCA 59.817 50.000 0.00 0.00 0.00 4.17
179 182 1.318576 AAACTGCACAGCTAACCACC 58.681 50.000 0.00 0.00 0.00 4.61
180 183 4.766404 ATAAAACTGCACAGCTAACCAC 57.234 40.909 0.00 0.00 0.00 4.16
181 184 5.106869 CGTAATAAAACTGCACAGCTAACCA 60.107 40.000 0.00 0.00 0.00 3.67
182 185 5.106830 ACGTAATAAAACTGCACAGCTAACC 60.107 40.000 0.00 0.00 0.00 2.85
183 186 5.923665 ACGTAATAAAACTGCACAGCTAAC 58.076 37.500 0.00 0.00 0.00 2.34
184 187 6.548441 AACGTAATAAAACTGCACAGCTAA 57.452 33.333 0.00 0.00 0.00 3.09
185 188 6.548441 AAACGTAATAAAACTGCACAGCTA 57.452 33.333 0.00 0.00 0.00 3.32
186 189 5.432885 AAACGTAATAAAACTGCACAGCT 57.567 34.783 0.00 0.00 0.00 4.24
187 190 6.197468 TGAAAAACGTAATAAAACTGCACAGC 59.803 34.615 0.00 0.00 0.00 4.40
188 191 7.565073 GCTGAAAAACGTAATAAAACTGCACAG 60.565 37.037 0.00 0.00 0.00 3.66
189 192 6.197468 GCTGAAAAACGTAATAAAACTGCACA 59.803 34.615 0.00 0.00 0.00 4.57
190 193 6.568939 GCTGAAAAACGTAATAAAACTGCAC 58.431 36.000 0.00 0.00 0.00 4.57
191 194 5.396947 CGCTGAAAAACGTAATAAAACTGCA 59.603 36.000 0.00 0.00 0.00 4.41
192 195 5.397240 ACGCTGAAAAACGTAATAAAACTGC 59.603 36.000 0.00 0.00 41.48 4.40
193 196 6.963017 ACGCTGAAAAACGTAATAAAACTG 57.037 33.333 0.00 0.00 41.48 3.16
194 197 6.415573 CCAACGCTGAAAAACGTAATAAAACT 59.584 34.615 0.00 0.00 42.68 2.66
195 198 6.345172 CCCAACGCTGAAAAACGTAATAAAAC 60.345 38.462 0.00 0.00 42.68 2.43
196 199 5.686397 CCCAACGCTGAAAAACGTAATAAAA 59.314 36.000 0.00 0.00 42.68 1.52
197 200 5.213675 CCCAACGCTGAAAAACGTAATAAA 58.786 37.500 0.00 0.00 42.68 1.40
198 201 4.785417 CCCAACGCTGAAAAACGTAATAA 58.215 39.130 0.00 0.00 42.68 1.40
199 202 3.365164 GCCCAACGCTGAAAAACGTAATA 60.365 43.478 0.00 0.00 42.68 0.98
200 203 2.606065 GCCCAACGCTGAAAAACGTAAT 60.606 45.455 0.00 0.00 42.68 1.89
221 224 3.081804 AGGAACGAGCAAACCAAATAGG 58.918 45.455 0.00 0.00 45.67 2.57
235 238 2.702261 CCGAATTTACCCAAGGAACGA 58.298 47.619 0.00 0.00 0.00 3.85
236 239 1.131693 GCCGAATTTACCCAAGGAACG 59.868 52.381 0.00 0.00 0.00 3.95
237 240 2.443416 AGCCGAATTTACCCAAGGAAC 58.557 47.619 0.00 0.00 0.00 3.62
238 241 2.891191 AGCCGAATTTACCCAAGGAA 57.109 45.000 0.00 0.00 0.00 3.36
276 279 6.480320 CAGAGTAATCCTCGGATAAAACTTGG 59.520 42.308 0.00 0.00 45.44 3.61
279 282 7.419711 TTCAGAGTAATCCTCGGATAAAACT 57.580 36.000 0.00 3.93 42.79 2.66
283 286 7.226720 GCATTTTTCAGAGTAATCCTCGGATAA 59.773 37.037 0.00 0.00 42.79 1.75
289 292 6.500684 TGTGCATTTTTCAGAGTAATCCTC 57.499 37.500 0.00 0.00 40.80 3.71
290 293 6.435277 ACATGTGCATTTTTCAGAGTAATCCT 59.565 34.615 0.00 0.00 0.00 3.24
296 299 4.924305 ACACATGTGCATTTTTCAGAGT 57.076 36.364 25.68 0.00 0.00 3.24
298 301 3.803231 GCAACACATGTGCATTTTTCAGA 59.197 39.130 25.68 0.00 0.00 3.27
299 302 3.059461 GGCAACACATGTGCATTTTTCAG 60.059 43.478 25.68 6.26 0.00 3.02
300 303 2.871022 GGCAACACATGTGCATTTTTCA 59.129 40.909 25.68 0.00 0.00 2.69
301 304 2.871022 TGGCAACACATGTGCATTTTTC 59.129 40.909 25.68 6.87 46.17 2.29
302 305 2.915349 TGGCAACACATGTGCATTTTT 58.085 38.095 25.68 9.24 46.17 1.94
323 326 5.840243 TTGATTCAGTAATTGCCAGATGG 57.160 39.130 0.00 0.00 38.53 3.51
335 338 8.862325 TGAAGAATTTAGCCTTTGATTCAGTA 57.138 30.769 0.00 0.00 32.35 2.74
342 345 7.170965 AGATGTCTGAAGAATTTAGCCTTTGA 58.829 34.615 0.00 0.00 30.80 2.69
345 348 7.768120 CAGTAGATGTCTGAAGAATTTAGCCTT 59.232 37.037 0.00 0.00 35.20 4.35
346 349 7.271511 CAGTAGATGTCTGAAGAATTTAGCCT 58.728 38.462 0.00 0.00 35.20 4.58
347 350 6.018343 GCAGTAGATGTCTGAAGAATTTAGCC 60.018 42.308 0.00 0.00 35.20 3.93
348 351 6.536582 TGCAGTAGATGTCTGAAGAATTTAGC 59.463 38.462 0.00 0.00 35.20 3.09
349 352 8.386606 GTTGCAGTAGATGTCTGAAGAATTTAG 58.613 37.037 0.00 0.00 35.20 1.85
350 353 7.063426 CGTTGCAGTAGATGTCTGAAGAATTTA 59.937 37.037 0.00 0.00 35.20 1.40
351 354 6.128445 CGTTGCAGTAGATGTCTGAAGAATTT 60.128 38.462 0.00 0.00 35.20 1.82
352 355 5.349817 CGTTGCAGTAGATGTCTGAAGAATT 59.650 40.000 0.00 0.00 35.20 2.17
353 356 4.867047 CGTTGCAGTAGATGTCTGAAGAAT 59.133 41.667 0.00 0.00 35.20 2.40
354 357 4.237724 CGTTGCAGTAGATGTCTGAAGAA 58.762 43.478 0.00 0.00 35.20 2.52
355 358 3.838120 CGTTGCAGTAGATGTCTGAAGA 58.162 45.455 0.00 0.00 35.20 2.87
356 359 2.346847 GCGTTGCAGTAGATGTCTGAAG 59.653 50.000 0.00 0.00 35.20 3.02
357 360 2.337583 GCGTTGCAGTAGATGTCTGAA 58.662 47.619 0.00 0.00 35.20 3.02
358 361 1.732405 CGCGTTGCAGTAGATGTCTGA 60.732 52.381 0.00 0.00 35.20 3.27
359 362 0.642291 CGCGTTGCAGTAGATGTCTG 59.358 55.000 0.00 0.00 36.18 3.51
360 363 1.078759 GCGCGTTGCAGTAGATGTCT 61.079 55.000 8.43 0.00 45.45 3.41
361 364 1.345176 GCGCGTTGCAGTAGATGTC 59.655 57.895 8.43 0.00 45.45 3.06
362 365 3.474806 GCGCGTTGCAGTAGATGT 58.525 55.556 8.43 0.00 45.45 3.06
383 386 4.647399 TCACTTTACCAAAACCAAGGGAAG 59.353 41.667 0.00 0.00 0.00 3.46
393 396 7.040548 CCGGTAGGTTAAATCACTTTACCAAAA 60.041 37.037 0.00 0.00 31.59 2.44
397 400 4.877823 CCCGGTAGGTTAAATCACTTTACC 59.122 45.833 0.00 0.00 35.12 2.85
398 401 4.333649 GCCCGGTAGGTTAAATCACTTTAC 59.666 45.833 0.00 0.00 38.26 2.01
399 402 4.516323 GCCCGGTAGGTTAAATCACTTTA 58.484 43.478 0.00 0.00 38.26 1.85
402 405 1.211212 GGCCCGGTAGGTTAAATCACT 59.789 52.381 0.00 0.00 38.26 3.41
405 408 2.294979 CAAGGCCCGGTAGGTTAAATC 58.705 52.381 0.00 0.00 38.26 2.17
406 409 1.637035 ACAAGGCCCGGTAGGTTAAAT 59.363 47.619 0.00 0.00 38.26 1.40
407 410 1.066471 ACAAGGCCCGGTAGGTTAAA 58.934 50.000 0.00 0.00 38.26 1.52
417 428 1.084289 GTAACAGCTAACAAGGCCCG 58.916 55.000 0.00 0.00 0.00 6.13
432 443 7.649057 ACAGCAAACTAAGAAAAGATGGTAAC 58.351 34.615 0.00 0.00 0.00 2.50
433 444 7.817418 ACAGCAAACTAAGAAAAGATGGTAA 57.183 32.000 0.00 0.00 0.00 2.85
434 445 7.648142 CAACAGCAAACTAAGAAAAGATGGTA 58.352 34.615 0.00 0.00 0.00 3.25
435 446 6.507023 CAACAGCAAACTAAGAAAAGATGGT 58.493 36.000 0.00 0.00 0.00 3.55
439 450 5.574891 TGCAACAGCAAACTAAGAAAAGA 57.425 34.783 0.00 0.00 34.85 2.52
466 477 1.403647 CGACGTCCTTATGAGGCAACA 60.404 52.381 10.58 0.00 43.21 3.33
475 486 2.035576 GGGCAGTTATCGACGTCCTTAT 59.964 50.000 10.58 4.01 0.00 1.73
476 487 1.406539 GGGCAGTTATCGACGTCCTTA 59.593 52.381 10.58 0.00 0.00 2.69
479 490 1.588139 CGGGCAGTTATCGACGTCC 60.588 63.158 10.58 0.00 0.00 4.79
480 491 0.030369 ATCGGGCAGTTATCGACGTC 59.970 55.000 5.18 5.18 35.70 4.34
482 493 0.248907 ACATCGGGCAGTTATCGACG 60.249 55.000 0.00 0.00 35.70 5.12
483 494 1.209128 CACATCGGGCAGTTATCGAC 58.791 55.000 0.00 0.00 35.70 4.20
484 495 0.821517 ACACATCGGGCAGTTATCGA 59.178 50.000 0.00 0.00 37.33 3.59
485 496 0.930310 CACACATCGGGCAGTTATCG 59.070 55.000 0.00 0.00 0.00 2.92
487 498 3.476740 CCACACATCGGGCAGTTAT 57.523 52.632 0.00 0.00 0.00 1.89
494 505 0.107703 ACTACATGCCACACATCGGG 60.108 55.000 0.00 0.00 36.64 5.14
495 506 2.595124 TACTACATGCCACACATCGG 57.405 50.000 0.00 0.00 36.64 4.18
498 509 3.343617 GGTGTTACTACATGCCACACAT 58.656 45.455 12.69 0.00 39.65 3.21
499 510 2.773487 GGTGTTACTACATGCCACACA 58.227 47.619 12.69 0.21 39.65 3.72
500 511 1.730064 CGGTGTTACTACATGCCACAC 59.270 52.381 0.00 0.00 36.50 3.82
502 513 0.725117 GCGGTGTTACTACATGCCAC 59.275 55.000 0.00 0.00 36.50 5.01
504 515 2.390427 GGCGGTGTTACTACATGCC 58.610 57.895 8.19 8.19 45.34 4.40
507 518 0.978151 TGTGGGCGGTGTTACTACAT 59.022 50.000 0.00 0.00 36.50 2.29
508 519 0.033781 GTGTGGGCGGTGTTACTACA 59.966 55.000 0.00 0.00 0.00 2.74
509 520 1.010419 CGTGTGGGCGGTGTTACTAC 61.010 60.000 0.00 0.00 0.00 2.73
510 521 1.289694 CGTGTGGGCGGTGTTACTA 59.710 57.895 0.00 0.00 0.00 1.82
511 522 2.029964 CGTGTGGGCGGTGTTACT 59.970 61.111 0.00 0.00 0.00 2.24
513 524 0.747283 AAAACGTGTGGGCGGTGTTA 60.747 50.000 0.00 0.00 35.98 2.41
514 525 1.596895 AAAAACGTGTGGGCGGTGTT 61.597 50.000 0.00 0.00 35.98 3.32
515 526 2.047443 AAAAACGTGTGGGCGGTGT 61.047 52.632 0.00 0.00 35.98 4.16
516 527 2.802106 AAAAACGTGTGGGCGGTG 59.198 55.556 0.00 0.00 35.98 4.94
530 541 7.789273 TCGGATGACAACTTTAGTGTAAAAA 57.211 32.000 0.00 0.00 0.00 1.94
531 542 7.789273 TTCGGATGACAACTTTAGTGTAAAA 57.211 32.000 0.00 0.00 0.00 1.52
532 543 7.789273 TTTCGGATGACAACTTTAGTGTAAA 57.211 32.000 0.00 0.00 0.00 2.01
533 544 7.789273 TTTTCGGATGACAACTTTAGTGTAA 57.211 32.000 0.00 0.00 0.00 2.41
534 545 7.789273 TTTTTCGGATGACAACTTTAGTGTA 57.211 32.000 0.00 0.00 0.00 2.90
535 546 6.687081 TTTTTCGGATGACAACTTTAGTGT 57.313 33.333 0.00 0.00 0.00 3.55
571 582 6.376581 TGTTTGGATGGCAAATTTCAGTTTTT 59.623 30.769 0.00 0.00 0.00 1.94
572 583 5.884792 TGTTTGGATGGCAAATTTCAGTTTT 59.115 32.000 0.00 0.00 0.00 2.43
573 584 5.435291 TGTTTGGATGGCAAATTTCAGTTT 58.565 33.333 0.00 0.00 0.00 2.66
574 585 5.033589 TGTTTGGATGGCAAATTTCAGTT 57.966 34.783 0.00 0.00 0.00 3.16
575 586 4.101430 ACTGTTTGGATGGCAAATTTCAGT 59.899 37.500 0.00 0.00 0.00 3.41
576 587 4.449743 CACTGTTTGGATGGCAAATTTCAG 59.550 41.667 0.00 0.00 0.00 3.02
577 588 4.378774 CACTGTTTGGATGGCAAATTTCA 58.621 39.130 0.00 0.00 0.00 2.69
578 589 3.187022 GCACTGTTTGGATGGCAAATTTC 59.813 43.478 0.00 0.00 0.00 2.17
579 590 3.140623 GCACTGTTTGGATGGCAAATTT 58.859 40.909 0.00 0.00 0.00 1.82
580 591 2.369532 AGCACTGTTTGGATGGCAAATT 59.630 40.909 0.00 0.00 0.00 1.82
581 592 1.972795 AGCACTGTTTGGATGGCAAAT 59.027 42.857 0.00 0.00 0.00 2.32
582 593 1.412079 AGCACTGTTTGGATGGCAAA 58.588 45.000 0.00 0.00 0.00 3.68
583 594 1.340889 GAAGCACTGTTTGGATGGCAA 59.659 47.619 0.00 0.00 0.00 4.52
584 595 0.961019 GAAGCACTGTTTGGATGGCA 59.039 50.000 0.00 0.00 0.00 4.92
585 596 0.961019 TGAAGCACTGTTTGGATGGC 59.039 50.000 0.00 0.00 0.00 4.40
586 597 1.955778 TGTGAAGCACTGTTTGGATGG 59.044 47.619 0.00 0.00 35.11 3.51
587 598 3.067180 AGTTGTGAAGCACTGTTTGGATG 59.933 43.478 0.00 0.00 35.11 3.51
588 599 3.290710 AGTTGTGAAGCACTGTTTGGAT 58.709 40.909 0.00 0.00 35.11 3.41
589 600 2.722094 AGTTGTGAAGCACTGTTTGGA 58.278 42.857 0.00 0.00 35.11 3.53
590 601 4.630894 TTAGTTGTGAAGCACTGTTTGG 57.369 40.909 0.00 0.00 35.11 3.28
591 602 7.063308 ACAATTTTAGTTGTGAAGCACTGTTTG 59.937 33.333 0.00 0.00 40.60 2.93
592 603 7.096551 ACAATTTTAGTTGTGAAGCACTGTTT 58.903 30.769 0.00 0.00 40.60 2.83
593 604 6.630071 ACAATTTTAGTTGTGAAGCACTGTT 58.370 32.000 0.00 0.00 40.60 3.16
594 605 6.127758 TGACAATTTTAGTTGTGAAGCACTGT 60.128 34.615 0.00 0.00 42.08 3.55
595 606 6.264832 TGACAATTTTAGTTGTGAAGCACTG 58.735 36.000 0.00 0.00 42.08 3.66
596 607 6.449635 TGACAATTTTAGTTGTGAAGCACT 57.550 33.333 0.00 0.00 42.08 4.40
597 608 6.363357 GGATGACAATTTTAGTTGTGAAGCAC 59.637 38.462 0.00 0.00 42.08 4.40
598 609 6.040278 TGGATGACAATTTTAGTTGTGAAGCA 59.960 34.615 0.00 0.00 42.08 3.91
599 610 6.446318 TGGATGACAATTTTAGTTGTGAAGC 58.554 36.000 0.00 0.00 42.08 3.86
600 611 7.651808 ACTGGATGACAATTTTAGTTGTGAAG 58.348 34.615 0.00 0.00 42.08 3.02
601 612 7.581213 ACTGGATGACAATTTTAGTTGTGAA 57.419 32.000 0.00 0.00 42.08 3.18
602 613 7.424803 CAACTGGATGACAATTTTAGTTGTGA 58.575 34.615 0.00 0.00 42.08 3.58
603 614 7.627585 CAACTGGATGACAATTTTAGTTGTG 57.372 36.000 0.00 0.00 42.08 3.33
604 615 7.346751 ACAACTGGATGACAATTTTAGTTGT 57.653 32.000 12.48 12.48 46.79 3.32
605 616 9.180678 GTTACAACTGGATGACAATTTTAGTTG 57.819 33.333 11.37 11.37 45.31 3.16
606 617 9.131791 AGTTACAACTGGATGACAATTTTAGTT 57.868 29.630 0.00 0.00 37.98 2.24
607 618 8.691661 AGTTACAACTGGATGACAATTTTAGT 57.308 30.769 0.00 0.00 37.98 2.24
610 621 9.965824 CTTTAGTTACAACTGGATGACAATTTT 57.034 29.630 4.86 0.00 40.07 1.82
611 622 8.082242 GCTTTAGTTACAACTGGATGACAATTT 58.918 33.333 4.86 0.00 40.07 1.82
612 623 7.448469 AGCTTTAGTTACAACTGGATGACAATT 59.552 33.333 4.86 0.00 40.07 2.32
613 624 6.942576 AGCTTTAGTTACAACTGGATGACAAT 59.057 34.615 4.86 0.00 40.07 2.71
614 625 6.204688 CAGCTTTAGTTACAACTGGATGACAA 59.795 38.462 4.86 0.00 40.07 3.18
615 626 5.700832 CAGCTTTAGTTACAACTGGATGACA 59.299 40.000 4.86 0.00 40.07 3.58
616 627 5.701290 ACAGCTTTAGTTACAACTGGATGAC 59.299 40.000 4.86 0.00 40.07 3.06
617 628 5.865085 ACAGCTTTAGTTACAACTGGATGA 58.135 37.500 4.86 0.00 40.07 2.92
618 629 5.700832 TGACAGCTTTAGTTACAACTGGATG 59.299 40.000 4.86 6.58 40.07 3.51
619 630 5.865085 TGACAGCTTTAGTTACAACTGGAT 58.135 37.500 4.86 0.00 40.07 3.41
620 631 5.284861 TGACAGCTTTAGTTACAACTGGA 57.715 39.130 4.86 0.00 40.07 3.86
621 632 5.700832 TGATGACAGCTTTAGTTACAACTGG 59.299 40.000 4.86 0.00 40.07 4.00
622 633 6.785488 TGATGACAGCTTTAGTTACAACTG 57.215 37.500 4.86 0.00 40.07 3.16
623 634 7.801716 TTTGATGACAGCTTTAGTTACAACT 57.198 32.000 0.00 0.00 42.91 3.16
624 635 8.850454 TTTTTGATGACAGCTTTAGTTACAAC 57.150 30.769 0.00 0.00 0.00 3.32
646 657 8.649973 TGAAATAATTTTGCCTACACGTTTTT 57.350 26.923 0.00 0.00 0.00 1.94
647 658 8.707839 CATGAAATAATTTTGCCTACACGTTTT 58.292 29.630 0.00 0.00 0.00 2.43
648 659 7.870445 ACATGAAATAATTTTGCCTACACGTTT 59.130 29.630 0.00 0.00 0.00 3.60
649 660 7.375053 ACATGAAATAATTTTGCCTACACGTT 58.625 30.769 0.00 0.00 0.00 3.99
650 661 6.919721 ACATGAAATAATTTTGCCTACACGT 58.080 32.000 0.00 0.00 0.00 4.49
651 662 7.008266 GTGACATGAAATAATTTTGCCTACACG 59.992 37.037 0.00 0.00 0.00 4.49
652 663 7.812191 TGTGACATGAAATAATTTTGCCTACAC 59.188 33.333 0.00 0.00 0.00 2.90
653 664 7.890515 TGTGACATGAAATAATTTTGCCTACA 58.109 30.769 0.00 0.00 0.00 2.74
654 665 8.810427 CATGTGACATGAAATAATTTTGCCTAC 58.190 33.333 20.38 0.00 0.00 3.18
655 666 8.530311 ACATGTGACATGAAATAATTTTGCCTA 58.470 29.630 30.26 0.00 0.00 3.93
656 667 7.332430 CACATGTGACATGAAATAATTTTGCCT 59.668 33.333 30.26 1.24 0.00 4.75
657 668 7.118101 ACACATGTGACATGAAATAATTTTGCC 59.882 33.333 31.94 0.00 0.00 4.52
658 669 8.020861 ACACATGTGACATGAAATAATTTTGC 57.979 30.769 31.94 0.00 0.00 3.68
675 686 4.944962 AATGATAACGTCCACACATGTG 57.055 40.909 24.25 24.25 45.23 3.21
676 687 4.155826 CCAAATGATAACGTCCACACATGT 59.844 41.667 0.00 0.00 0.00 3.21
677 688 4.438608 CCCAAATGATAACGTCCACACATG 60.439 45.833 0.00 0.00 0.00 3.21
678 689 3.694072 CCCAAATGATAACGTCCACACAT 59.306 43.478 0.00 0.00 0.00 3.21
679 690 3.078097 CCCAAATGATAACGTCCACACA 58.922 45.455 0.00 0.00 0.00 3.72
680 691 2.422127 CCCCAAATGATAACGTCCACAC 59.578 50.000 0.00 0.00 0.00 3.82
681 692 2.306219 TCCCCAAATGATAACGTCCACA 59.694 45.455 0.00 0.00 0.00 4.17
682 693 2.993937 TCCCCAAATGATAACGTCCAC 58.006 47.619 0.00 0.00 0.00 4.02
683 694 3.722908 TTCCCCAAATGATAACGTCCA 57.277 42.857 0.00 0.00 0.00 4.02
684 695 5.394224 TTTTTCCCCAAATGATAACGTCC 57.606 39.130 0.00 0.00 0.00 4.79
703 714 2.799207 CGACAGTGCTGCAACCATTTTT 60.799 45.455 2.77 0.00 0.00 1.94
704 715 1.269206 CGACAGTGCTGCAACCATTTT 60.269 47.619 2.77 0.00 0.00 1.82
705 716 0.311790 CGACAGTGCTGCAACCATTT 59.688 50.000 2.77 0.00 0.00 2.32
706 717 1.951510 CGACAGTGCTGCAACCATT 59.048 52.632 2.77 0.00 0.00 3.16
707 718 2.620112 GCGACAGTGCTGCAACCAT 61.620 57.895 2.77 0.00 0.00 3.55
708 719 3.279116 GCGACAGTGCTGCAACCA 61.279 61.111 2.77 0.00 0.00 3.67
709 720 2.974698 AGCGACAGTGCTGCAACC 60.975 61.111 2.77 0.00 45.28 3.77
716 727 3.678072 TGTACTAAAATCAGCGACAGTGC 59.322 43.478 0.00 0.00 0.00 4.40
717 728 5.839262 TTGTACTAAAATCAGCGACAGTG 57.161 39.130 0.00 0.00 0.00 3.66
718 729 5.932303 ACATTGTACTAAAATCAGCGACAGT 59.068 36.000 0.00 0.00 0.00 3.55
719 730 6.408858 ACATTGTACTAAAATCAGCGACAG 57.591 37.500 0.00 0.00 0.00 3.51
720 731 6.203915 ACAACATTGTACTAAAATCAGCGACA 59.796 34.615 0.00 0.00 40.16 4.35
721 732 6.599437 ACAACATTGTACTAAAATCAGCGAC 58.401 36.000 0.00 0.00 40.16 5.19
722 733 6.795098 ACAACATTGTACTAAAATCAGCGA 57.205 33.333 0.00 0.00 40.16 4.93
735 746 6.924612 TCTGCTTAGTTTCGTACAACATTGTA 59.075 34.615 0.22 0.22 42.35 2.41
736 747 5.756347 TCTGCTTAGTTTCGTACAACATTGT 59.244 36.000 2.32 2.32 44.86 2.71
737 748 6.071463 GTCTGCTTAGTTTCGTACAACATTG 58.929 40.000 0.00 0.00 0.00 2.82
738 749 5.178809 GGTCTGCTTAGTTTCGTACAACATT 59.821 40.000 0.00 0.00 0.00 2.71
739 750 4.689345 GGTCTGCTTAGTTTCGTACAACAT 59.311 41.667 0.00 0.00 0.00 2.71
740 751 4.053295 GGTCTGCTTAGTTTCGTACAACA 58.947 43.478 0.00 0.00 0.00 3.33
741 752 4.053295 TGGTCTGCTTAGTTTCGTACAAC 58.947 43.478 0.00 0.00 0.00 3.32
742 753 4.202182 ACTGGTCTGCTTAGTTTCGTACAA 60.202 41.667 0.00 0.00 0.00 2.41
743 754 3.319972 ACTGGTCTGCTTAGTTTCGTACA 59.680 43.478 0.00 0.00 0.00 2.90
744 755 3.910648 ACTGGTCTGCTTAGTTTCGTAC 58.089 45.455 0.00 0.00 0.00 3.67
745 756 3.570975 TGACTGGTCTGCTTAGTTTCGTA 59.429 43.478 2.38 0.00 0.00 3.43
746 757 2.364324 TGACTGGTCTGCTTAGTTTCGT 59.636 45.455 2.38 0.00 0.00 3.85
747 758 2.989840 CTGACTGGTCTGCTTAGTTTCG 59.010 50.000 2.38 0.00 0.00 3.46
748 759 3.991121 GTCTGACTGGTCTGCTTAGTTTC 59.009 47.826 0.00 0.00 0.00 2.78
752 763 3.583806 CTTGTCTGACTGGTCTGCTTAG 58.416 50.000 9.51 0.00 0.00 2.18
759 770 0.032130 TCGTGCTTGTCTGACTGGTC 59.968 55.000 9.51 0.00 0.00 4.02
762 773 2.802247 TGAAATCGTGCTTGTCTGACTG 59.198 45.455 9.51 3.43 0.00 3.51
784 795 5.393027 GCTAGTTTGACATGGTAATGGGTTG 60.393 44.000 0.00 0.00 38.19 3.77
787 798 3.632145 GGCTAGTTTGACATGGTAATGGG 59.368 47.826 0.00 0.00 38.19 4.00
790 801 4.526970 CTGGGCTAGTTTGACATGGTAAT 58.473 43.478 0.00 0.00 0.00 1.89
791 802 3.308117 CCTGGGCTAGTTTGACATGGTAA 60.308 47.826 0.00 0.00 0.00 2.85
793 804 1.004745 CCTGGGCTAGTTTGACATGGT 59.995 52.381 0.00 0.00 0.00 3.55
794 805 1.004745 ACCTGGGCTAGTTTGACATGG 59.995 52.381 0.00 0.00 0.00 3.66
795 806 2.290260 TGACCTGGGCTAGTTTGACATG 60.290 50.000 0.00 0.00 0.00 3.21
796 807 1.985159 TGACCTGGGCTAGTTTGACAT 59.015 47.619 0.00 0.00 0.00 3.06
798 809 2.152016 GTTGACCTGGGCTAGTTTGAC 58.848 52.381 0.00 0.00 0.00 3.18
800 811 2.270352 TGTTGACCTGGGCTAGTTTG 57.730 50.000 0.00 0.00 0.00 2.93
801 812 2.174854 ACTTGTTGACCTGGGCTAGTTT 59.825 45.455 0.00 0.00 0.00 2.66
802 813 1.774856 ACTTGTTGACCTGGGCTAGTT 59.225 47.619 0.00 0.00 0.00 2.24
805 816 2.565834 GAGTACTTGTTGACCTGGGCTA 59.434 50.000 0.00 0.00 0.00 3.93
807 818 1.610886 GGAGTACTTGTTGACCTGGGC 60.611 57.143 0.00 0.00 0.00 5.36
808 819 1.003233 GGGAGTACTTGTTGACCTGGG 59.997 57.143 0.00 0.00 0.00 4.45
809 820 1.978580 AGGGAGTACTTGTTGACCTGG 59.021 52.381 0.00 0.00 0.00 4.45
810 821 4.884668 TTAGGGAGTACTTGTTGACCTG 57.115 45.455 0.00 0.00 0.00 4.00
811 822 4.906060 AGTTTAGGGAGTACTTGTTGACCT 59.094 41.667 0.00 1.50 0.00 3.85
812 823 5.224821 AGTTTAGGGAGTACTTGTTGACC 57.775 43.478 0.00 0.00 0.00 4.02
872 883 9.387257 CCCTCCGTAAACTAATATAAAAGTGTT 57.613 33.333 0.00 0.00 0.00 3.32
873 884 8.761689 TCCCTCCGTAAACTAATATAAAAGTGT 58.238 33.333 0.00 0.00 0.00 3.55
874 885 9.257651 CTCCCTCCGTAAACTAATATAAAAGTG 57.742 37.037 0.00 0.00 0.00 3.16
875 886 8.985922 ACTCCCTCCGTAAACTAATATAAAAGT 58.014 33.333 0.00 0.00 0.00 2.66
878 889 9.646522 AGTACTCCCTCCGTAAACTAATATAAA 57.353 33.333 0.00 0.00 0.00 1.40
880 891 9.726438 GTAGTACTCCCTCCGTAAACTAATATA 57.274 37.037 0.00 0.00 0.00 0.86
881 892 8.443979 AGTAGTACTCCCTCCGTAAACTAATAT 58.556 37.037 0.00 0.00 0.00 1.28
882 893 7.716998 CAGTAGTACTCCCTCCGTAAACTAATA 59.283 40.741 0.00 0.00 0.00 0.98
883 894 6.545298 CAGTAGTACTCCCTCCGTAAACTAAT 59.455 42.308 0.00 0.00 0.00 1.73
884 895 5.882557 CAGTAGTACTCCCTCCGTAAACTAA 59.117 44.000 0.00 0.00 0.00 2.24
885 896 5.431765 CAGTAGTACTCCCTCCGTAAACTA 58.568 45.833 0.00 0.00 0.00 2.24
886 897 4.268359 CAGTAGTACTCCCTCCGTAAACT 58.732 47.826 0.00 0.00 0.00 2.66
887 898 3.181492 GCAGTAGTACTCCCTCCGTAAAC 60.181 52.174 0.00 0.00 0.00 2.01
888 899 3.019564 GCAGTAGTACTCCCTCCGTAAA 58.980 50.000 0.00 0.00 0.00 2.01
889 900 2.648059 GCAGTAGTACTCCCTCCGTAA 58.352 52.381 0.00 0.00 0.00 3.18
890 901 1.473965 CGCAGTAGTACTCCCTCCGTA 60.474 57.143 0.00 0.00 0.00 4.02
909 925 0.942252 CTGGGTCATGCACATCATCG 59.058 55.000 0.00 0.00 31.79 3.84
933 949 0.317160 CTGGTCACTTGGTAGCACGA 59.683 55.000 5.31 0.00 0.00 4.35
994 1021 2.124570 CGGGTTCTCCATGGCAGG 60.125 66.667 6.96 0.00 34.36 4.85
998 1025 3.622060 AACGCCGGGTTCTCCATGG 62.622 63.158 4.97 4.97 31.79 3.66
1029 1063 2.732094 GAACCCCGTGTGACGTCG 60.732 66.667 11.62 0.00 40.58 5.12
1215 1249 0.458543 AGAGGTTGTCTGCGCGTATG 60.459 55.000 8.43 0.00 32.57 2.39
1322 1356 1.081376 ATGTCGCCGTAGCTATCGC 60.081 57.895 0.00 0.42 36.60 4.58
1354 1388 3.749064 TGCCTCGAGTGCCGTCTC 61.749 66.667 19.09 0.00 39.75 3.36
1434 1468 1.068281 GATCTTGCGATCTCCTGCTGA 59.932 52.381 0.00 0.00 42.25 4.26
1572 1606 0.318441 TCCAGTTCTTCACCTGCTCG 59.682 55.000 0.00 0.00 0.00 5.03
1668 1702 0.820891 GGATGTGGCCATAGTGCTGG 60.821 60.000 9.72 0.00 39.45 4.85
1797 1831 2.697425 CGCCAATGCTCGTCGAAG 59.303 61.111 0.00 0.00 34.43 3.79
1869 1903 0.742281 CCAAGCCTCCGACTCATGTG 60.742 60.000 0.00 0.00 0.00 3.21
1884 1921 6.325286 AGGTATAGGAAAGAGCTTACTCCAAG 59.675 42.308 10.51 0.00 44.65 3.61
1886 1923 5.598830 CAGGTATAGGAAAGAGCTTACTCCA 59.401 44.000 10.51 0.00 44.65 3.86
1919 1973 4.441792 GTCACATTTCAAGCCAAAAAGGT 58.558 39.130 0.00 0.00 40.61 3.50
1954 2008 6.919775 ATAGCTCATTACCGGAGAATAACT 57.080 37.500 9.46 7.85 34.24 2.24
1960 2014 5.571285 ACAGATATAGCTCATTACCGGAGA 58.429 41.667 9.46 0.00 34.24 3.71
1964 2018 6.915300 GCTGATACAGATATAGCTCATTACCG 59.085 42.308 0.00 0.00 32.44 4.02
1972 2026 8.159447 TCCATTTTTGCTGATACAGATATAGCT 58.841 33.333 2.81 0.00 35.50 3.32
2137 2595 1.753078 GTTCGGGCCCCAGGAATTC 60.753 63.158 18.66 0.00 0.00 2.17
2184 2642 3.214328 GAGAAACAAGCTGTGGAGGAAA 58.786 45.455 0.00 0.00 0.00 3.13
2194 2652 3.862267 CGAAGATGATCGAGAAACAAGCT 59.138 43.478 0.00 0.00 45.48 3.74
2220 2678 9.085645 TCATAACAAGAGAACTAAGAGTACCAA 57.914 33.333 0.00 0.00 0.00 3.67
2385 2843 3.535561 CGAAAGCTCAGGTAATGGACAT 58.464 45.455 0.00 0.00 0.00 3.06
2418 2876 2.675348 GAGAGTTCAGCACATACCAAGC 59.325 50.000 0.00 0.00 0.00 4.01
2430 2888 1.506493 GTGCCACTGTGAGAGTTCAG 58.494 55.000 9.86 0.00 37.65 3.02
2460 2918 6.909909 ACCCAGTGAATTTAAAAATCGAGAC 58.090 36.000 0.00 0.00 0.00 3.36
2471 2929 5.486735 TTCTCCGTTACCCAGTGAATTTA 57.513 39.130 0.00 0.00 0.00 1.40
2473 2931 4.360951 TTTCTCCGTTACCCAGTGAATT 57.639 40.909 0.00 0.00 0.00 2.17
2505 2963 7.090173 CGGTTAATTTTCACTTGGATGACAAT 58.910 34.615 0.00 0.00 38.65 2.71
2511 2969 5.321927 AGACCGGTTAATTTTCACTTGGAT 58.678 37.500 9.42 0.00 0.00 3.41
2529 2987 3.556999 TCCTCTCTTCTTGGATAGACCG 58.443 50.000 0.00 0.00 42.61 4.79
2593 3051 7.568349 TCACATCAGAATGGCTAACTCTAAAT 58.432 34.615 0.00 0.00 37.19 1.40
2615 3073 8.804743 CATGATCTTTTCATAACAATGCTTCAC 58.195 33.333 0.00 0.00 43.40 3.18
2677 3135 5.278808 GGGTGTTTTACTGTGATCTTTTCCC 60.279 44.000 0.00 0.00 0.00 3.97
2689 3147 3.820467 TGCATCAGAAGGGTGTTTTACTG 59.180 43.478 0.00 0.00 0.00 2.74
2690 3148 4.098914 TGCATCAGAAGGGTGTTTTACT 57.901 40.909 0.00 0.00 0.00 2.24
2697 3155 1.068333 CCGTTTTGCATCAGAAGGGTG 60.068 52.381 0.00 0.00 31.68 4.61
2698 3156 1.247567 CCGTTTTGCATCAGAAGGGT 58.752 50.000 0.00 0.00 31.68 4.34
2699 3157 0.109132 GCCGTTTTGCATCAGAAGGG 60.109 55.000 0.00 4.95 36.83 3.95
2715 3173 4.474226 GCATAACTTTCTCCTTATGCCG 57.526 45.455 10.10 0.00 45.03 5.69
2729 3187 4.511082 GTGTGTGCAATTTTTGGCATAACT 59.489 37.500 0.00 0.00 42.75 2.24
2809 3267 4.457466 TGTTAAGTCTCCCCAGTTCAAAC 58.543 43.478 0.00 0.00 0.00 2.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.