>input_sequence_66501
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------------------------------------------------------------------A-------TGGAGA
ACCCGGCGTTCACGGCGGAGCTCGACGTCACACGGGGTTCATCCTACGGCAGGTTCGTCTCCGGCGTGCGCGACCAGCTC
GTGCTCCATGCCGGCGCGACGCGCCACCTGGAGCTCGTCTTGCTTCCAGCCCAGTCCGAGGACCCCGGCAAGGCTCCATG
GTTCGGCGTCACGCTCCGTTGCGGCTCCGGGCGCTCGGCGCTGCTCCGCATACGCGCAGACAACCTCTACCTCTCCGGTT
ACCGGAGCTCAGACGGTCTGTGGTCCGAGTTCCTCGGTGGCTCTCTCATCGCTGGCGCGACGCCGATTTCGTTCGGCGAT
AGCTACGGCGACATGGCGAGAGTGGCCGAGACGGCACTCGAGGCACTCACCCTCGGCAAGGAGGAGCTCCAAGCCGCGGC
GGAGCGCCTCACGGCCAGCGCCGGCACTCAGCAGGAGATCGCAAGATCGCTGATGACCATGTCGGTGATGGTTTGTGAGG
CCATCAGGTTCAGGAGCGTCGGCGGCGCGCTCAGCCACATGATGTGCAACGCTGCCCGGCGAGGGGTGCTGCCGGCGCAC
ATGGTCGAGCAGGTGAAGAACTGGAGGAGCCTGTCCGAGTACTGGCTCGGGGCCGTCCTCTACGCACAGCCGTTCCTGCC
GTACATAGAGGCCGACGGCAGCCAGCACTATGGCCACATCCCCCAGCACCTGCTCGCGCCGGCGAAGATCGACTGCCAGG
ACCACGCCATGATGGCGCTCGGCGTCGCGCTGAACCGGCAGAGGGGGCTGCAGGACAAGCACCCGGCGGCCTTCGACGAG
CATTGGCGCGCCGTGCGCGCCCACGCTCGCAAGCTTGACAGGGAAAGAGCATCTGCATCCGGCACAT---GA--------
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>chr1A_1_TraesCS1A01G234300
GTATACTTATGTTTGTTTTTGTCCAGGATAT--GCGTAACCCTTTTTGTTCATGACGATTTTTCTGTATTCATGTGCCAC
CGGAAATTTGATCATATGGTGCGGCAGACTCTGAACATCACCGATTATGCTAGCTGGCACTGGCAGATGGGTTAGCTGTG
CAGTTATTTTTTTTTCCGTGTGGTGGTTAGCTGTGCAGTTTTATTACGTTTTTCAGCGTTGGGCCTATTTGGTTTGCTCG
TTCCTTGGGTAAATTCGGCTAGCCAAGGTTCCGGTTGCCCAAGTTTTATCCGAGGATTACTCTGAAAAATGCACATGTGT
TGCCACCATCTGGCAATTACTGAATCAAAGGCTAAATTCTTCAGACATCTACTGCAACGCGCACCCTTCCCTTGGTTTTG
GTAAAGTGAT--------TTAACCTACCGGGCCTTGTTAGCTGTTACCATCTTTTCTTAGTTTGCTGTTGCAGCATTGTT
GCCTCATAAGGACGTCGATAACTGCCCGATGTGTGGCATGTAGTAACACCGCCCACACGTTTTTTACACTAAAGTTGTCA
TCCGAAAAAAACAAATCTCAAAAAAACTGAAATTTGCCATCCAAACAGTGCTTCACAACTAAAATTGTCATCCAGTTGTA
ACTAAAGCTGTCATCAAAAAACGTGTAGGCAAAATTATTTCATGTCACATGTGTGGACGTTATCATTTGGGGAAAAAATG
GTTGCAGCACTGTCGCTGATTTTAGTACAATGTTGTACGAAACTAAGCAGACCAGTCAGACAAGCACGATTTCACAACCC
ATTACCATGTCAAACTAGCCCAGGTCAACAAGTACTCCCTAAACTAATATAAAAGTATTTAGATTATCATTTTAGTATTC
TAAACACTTTTATATTAGTTTACGGAGGGAGT-----ACTACTGCGATGATGTGCATGACCCAGTGCCTCGTGCT-ACCA
AGTGACCAGTTCTTGCTGGCTACCCATCTTCTTTCGCCGTTG----------TCAAATAACCTGCCA-------TGGAGA
ACCCGGCGTTCACGGCGGAGCTCGACGTCACACGGGGTTCATCCTACGGCAGGTTCGTCTCCGGCGTGCGCGACCAGCTC
GTGCTCCATGCCGGCGCGACGCGCCACCTGGAGCTCGTCTTGCTTCCAGCCCAGTCCGAGGACCCCGGCAAGGCTCCATG
GTTCGGCGTCACGCTCCGTTGCGGCTCCGGGCGCTCGGCGCTGCTCCGCATACGCGCAGACAACCTCTACCTCTCCGGTT
ACCGGAGCTCAGACGGTCTGTGGTCCGAGTTCCTCGGTGGCTCTCTCATCGCTGGCGCGACGCCGATTTCGTTCGGCGAT
AGCTACGGCGACATGGCGAGAGTGGCCGAGACGGCACTCGAGGCACTCACCCTCGGCAAGGAGGAGCTCCAAGCCGCGGC
GGAGCGCCTCACGGCCAGCGCCGGCACTCAGCAGGAGATCGCAAGATCGCTGATGACCATGTCGGTGATGGTTTGTGAGG
CCATCAGGTTCAGGAGCGTCGGCGGCGCGCTCAGCCACATGATGTGCAACGCTGCCCGGCGAGGGGTGCTGCCGGCGCAC
ATGGTCGAGCAGGTGAAGAACTGGAGGAGCCTGTCCGAGTACTGGCTCGGGGCCGTCCTCTACGCACAGCCGTTCCTGCC
GTACATAGAGGCCGACGGCAGCCAGCACTATGGCCACATCCCCCAGCACCTGCTCGCGCCGGCGAAGATCGACTGCCAGG
ACCACGCCATGATGGCGCTCGGCGTCGCGCTGAACCGGCAGAGGGGGCTGCAGGACAAGCACCCGGCGGCCTTCGACGAG
CATTGGCGCGCCGTGCGCGCCCACGCTCGCAAGCTTGACAGGGAAAGAGCATCTGCATCCGGCACAT---GAGTCGGAGG
CTTGGAGTAAGCT-----------------CTTTCCTATACCTGGTATATTTACCTTTTTGGCTTGAAATGTGACCCATG
TTACAGAAGTTATTCTCCGGTAATGAGCTATATCTGTATCAGCAAAAAT-------------------------------
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-----------------------------------------------------GGATTTACAGAACTGCACACGAATTCT
TGCGTATCGTCATCCATGTCTTGAAACAATACGACCCCTGATGAACGGTTCGATGTCGCCTTCCAGGACCGAGTTGAGGT
CGGACAACTGGATGCCCGTGTTAAGATCATGGACGAATTCCTGGGGCCCGAACATGTATCGTCTCGTCTCGCGGTTGCAT
CTTTCCTCCACAGCTTGTTTCTCGATCATCTTCGGGTTTGGTACTCTTAGTTCTCTTGTTATGATGAGGAGCTTTGCTTT
CAGCCTGCTCACGGCTTTTAGCTTGTTTGCGAAATAGCTTCTTTCACCTGTGGAGAGACCAACCCAGTACATTTAGCCTG
CAGCTATATGCGGGTTCCCACTTGCGTGAACATTCTACATTTATGTCCATTACCTGAGCTTTCGGCAGTAACTCCGCTTG
GTATGTGCTGAACTCTCACAGTGGCACCATTTCTTCGGTCTCGATTTTTAAATTCACTGGGTAACGGAGAAATCTCCAGA
TCATTGTCATCCAAGTGAAAATTAACCGGTCTATCCAAGAAGAGAGGAATTATATCGACTCTAGCTGAAATCGCCTGGAA
GCTTTGGTAGATTTAGAGTTAGCCATTCTGATGTGAAGCATTGTTATGAAAAGATCATGATAAAAATAAATCCATTCTAG
TATCAAGCATCACAGGGAAAAGATCACAGTAAAACACCCTTCTGATGCAAAACGGCATAAGGAGAAAGTTATGCCAAAAA
TTGCACACACAATCTGGGCCTCCAGAACATTGTACCACAGTTTCTCCAGAAAACTAAATGAAAAGGGTTTGAACTGGGGA
GACTTAACATTCTAGAACCCAGAGGCCAAAGGTCACAAGTGGGACTTCACAGA
>chr1D_1
GTATACTTATGTTTGTTTTTGTCCAGGATATATGCGTAACCCTTTTTGTTCATGAC-ATTTTTCTGTATTCATGTGCCAC
CGGAAATTTAATTATATGGTGTGGCAGACTCTGAACATTGCAGATTATGCTAG------CTCGCAGACGGGTTAGCTGTG
CAGTTTGG-----------------------------------TTACGTTTTTCAGCGTTGGGTCTATTTGGTTTGC---
-TCCTTGGGTAAATTCGGCTAGCCAAGGTTCCGGTTGCTCATGTTCTATCCATGGATTTCCTCT-AAAATGCACATGTGC
TGTCAGCATCTGGCAATCACTGAACCA----------------------------AAGGCGCACCATTCCCTTGGGTTTT
TGAATGTTGGTCAAGTGATTAACCTACTGGGCCTTGTTA-------CCACCTTTTCTTAGTTTGCGGTTGCAGCATCGTT
GCCTCCCAAAAAGAAGGTATTTGAAACGTGTTTTAGCCAAACGGT-----------------------------------
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---------------------------------------AAAATAAGCAAACGAGTCAGACAAGCACGATTTCAAAAACC
CATTAACTTTAGTACAAAGTTGTACTAAGTTAAGACATTTTTTTTTGAAAAAGTTAAAACACTTATTTTGAG--------
---------------------ACGGAGGGAGTAGTAAACTACTGTGATGATGTGCATGACCCAGTGCCGCGTGCTGACCA
AGTGACCAGTTCTTGCTGGCTACCCATCTTCTTTCGCCGTTGTCAACCAGTATCAAATAATCTGTCATGGAGATTGGAGA
ACCCGGCGTTCACGGCGGAGCTGGACGTCACTCGGGGCCCATCCTACGGCAGGTTCGTCTCCAGCGTGCGCGACCAGCTC
GTGCTCCACGCCGGCGCGATGCGCCACCTGGAGCTCGTCTTGCTTCCTCCCCAGTCAGAGGACCCCGGAAAGGCTCCATG
GATCGGCGTCATGCTCCGATGCGGCCCCAGGCAATCGGCGCTGCTCCGGATATGCGCAGACAACCTCTACATCTCCGCTT
ACCGGAGCTCGGACGGTCTGTGGTCCGAGTTCCTCGGTGGCTCCCTAATCGCCGGCGCGAAGCCACTCTCGTTCGCCGAT
AGCTACGGCAACATGGCGAGAGTGGCCAAGGCGGCACT---------CACCCTGGGCAAGGAGGAGCTCGAAGCCGCGGC
GGAGCGCCTCACGGCCAGCGCCGGCACCCAGCAGGAGATCGCAAGATCGCTGATGACCATGTCGGTGATGGTTAGCGAAG
CCATCAGGTTCAGGAGCGTCGGCGACGCGCTCGGGCACATGATGTGCAACGCCGCGCGGCGAGGGGTGCTGCCGGCGCAC
ATGGTGGAGCAGGTGAAGAACTGGAGGAGCCTGTCCGAGTACTGGCTCGGGGCCGTCCTCTACGCCCAGCCGTTCCTGCC
GTACATAGAGGCCGACGGTAGTCAGCACTATGGCCACATCCCCCAGCACCTGCTCGCGCCGGCGAAGATCGACTGCCAGG
ACCACGCCATGATGGCGCTCGGCGTCGCGCTGAACCGGCAGAGGGGGCTGCAGGACAAGCACAAGGCGGCGCTCGACGAG
CACTGGCGCGCCGTGAGAGCCCACGCCCGCAAGCTTGACAGGGAAAGAGCATCTGCATCCAGTACATGACGACTCGGACT
GTCGGAGTAAGAGTTTGGTCAGAGAACATGCTTTCCTATACCTGGTATATTTGCCTTTTTGGCTTGAAATGTGACCCATG
TTACAGAGGTTCTCCTCTGGTAATGTGCTATATCTGTATCAGCAAAAATGGATTTACAGGACGCGGAGTTTCTGCACCCG
AGCTCAAATGAGCTCGGGTGAACAGTAAAATCAAAACTAAATCAAAACAAATTCAAAAAAATCCAATTTTTTTTGGGAGA
AACATTGACAAAAGTTCTAAGTGCTTGCAAAAATTCGTCATGAAATCACATTCCTAGAAGGCATGGCAAAAAAAAAAAAA
CAGTACTCTGAAAAAGCTACTTTCAAAAGCATTTTGAAGCACTGAAATTTTTTTTTGCCACGCCTTACAGGAATGTGATT
TCATGATGAATTTTTGCAGGCACTTATAACTTTTGTCAATGTTTCTCTCAAAAAAAATTTGGAATTTTTTGAATTTTTTT
CGATTTTACTGTTCACCGAGCTCAAATGAGCTCGGGAGCAGAAAGGCACTTTCGGATTTACAGAACTGCACACGAATTCT
TGCGTATCGTCATCCATGTCTTGAAACAATACGACCCCTGATGAACGGTTCGATGTCGCCTTCCAGGACCGAGTTAAGGT
CGGACAACTGGATGCCCGTGTTAAGATCATGGACCAATTCCTGGGGCCCGAACGTGTATCGTCTCGTCTCGCGGTTGCAT
CCTTCCTCCACGGCTTGTTTCTCGATCATCTTCGCGTCTGGTACTCTTAGTTCTCTTGTTATGATGAGTAGCTTTGCTTT
CAGCCTGCTCACGGCTTTTAGCTTGTTTGCGAAATAGCTTCTTTCACCTGTGGAGAGACCAACCCAGTACATTTAGCCTG
CAGCTATATGCGGGTTCCCACTTGCATGAACATTCTACATTTGTGTCCATTACCTGAGCTTTCGGCAGTAACTCCACTCG
GTATGTGTTGAACTCTCACAGTGGCGCCATTTCTTCGATCTCGATTTTCACATTCACTGGGTAGTGGAGAAATCTCCAGA
TCGTTGTCGTCCAAGTGAAAATTAACTGGTCTATCCAAGAAGAGAGGAATTATATCGACTCTAGCTGAAATCGCCTGGAA
GCTTTGGTAGGTTTAGAGTTAGCTATTCTGATATGAAGCATTGTTAGGAAAAGATCATGATAAAAATAAATCCATTCTAG
TATCAAGCATCACAAGGAAAAGATCATTGTAAAATG-CCTTCTGATGCAAAAT-GCATAAGGAGAAGGTTATGCTGAAAA
TTGCACACACAATCTGGGCCTCCAGAACATTGTACCACAGTTTCTCCAGAAAACTAAATGAAAAGGATTTGAACTGGGAA
GACATAAGATCCTAGAACCCAGAG-----------------------------
>chr1B_1146
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----------------------------------------------------------AGGACCCACGCAAGGCCCCATG
GTTCGGCGTCACGCTCAGATGCGGCTCCGGGAAGTCAGTGCTGCTCCGGATACGCGCAGACAACCTCTACATCTCCGGTT
ACCGGAGCCCGGAAGGTCTATGGTCCGAGTTCCTCGGTGGCTCCCTAATCGACGGCGCGGCGCCACTCTCGTTCGCCGGT
AGCTACGGCGATATGGCGAGAGTGGCCAAGACGGCACTTGAGGCACTCACCCTCGGCAAGGAGGAGCTCGAAGCCGCGGC
GGAGCGCGTCACGGCCAACGCCGGCACCCAGCAGGAGATCGTGAGATCGCCGATGACCATGTCGGTGATGGTCTGTGAGG
CCGTCAGGTTCAGGAGCGTCGGCGGCGTGCTCGGCCACATGATGTGCAACGCTGC----------------CCGGCGCAC
ATGGTGGAGCGGGTGAAGAACTGGAGGAGCCTCTCCGAGTACTGGCTCGGGGCCGTCCTCTACGCACTGTCGTTCCTGCC
GTACATAGAGGCCGACGGCAGTCAGCACTATGGCCACATCCCCCAGCACCTACTCGCGCCGGCGAAGATCGACTGCCAGG
ACCACGCCATGATGGCGCTCGGCGTCGCGCTGAACCGGCAGAGGGGGCTGCAGGACAAGCACCAGGCGGCGTTCGACGAG
CACTGGCGCGCCGTGCACGCCCACGCTCGCAAGCTTGACAGGGAAAGAGCATCTGCATCCGGTACACGATGAGTCGGATT
GTCAGAGTAAGCGGCTGGTGAGAGAACATGCTTTCCTATACCTGGTATATTTGCCTTTTTGGCTTGAAATGTGACCCATG
TTACAGAGGTCATCCTCTGGTAATGTGCTATATTTGTATCAGCAAAAATGGA----------------------------
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--------------------------------------------------------TTTACAGAACTGCACACAAATTCT
TGCATATCGTCATCCATGTCTTGAAACAATACGACCCCTGATGAACGGTTCGATGTCGCCTTCCAGGACCGAGTTGAGGT
CTGACAACTGGATGCCCGTGTTCAGATCATGGACCAATTCCTGGGGGCCAAACGTATATCGTCTCGTCTCGCGGTTGCAT
CCTTCCTCCACGGCTTGTTTTCCGATCATCTTCGGGTCTGGTAGTCTTAGTTCTCTTGTTATGATGAGTAGCTTTGCTTT
CAGCCTGCTCACGGCTTTTAGCTTGTTTGCAAAATAGCTTCTTTCACCTGTGGACAGATCACCCCAGTAAATTTAGCCTG
CAGCTATATGAGGATTCCCACTTGCATGAACATTCCACATTTGTGCCCATTACCTGAGCTTTCGGCAGTAACTCCACTTG
GTATGTGTTGAACTCTCACAGTGGCACCATTTCTTCGATCTCGATTTTCACATTCACTTGGTCGTGGAGAAATCTCCAGA
TCGCTGTCGTCCAAGTGAAAATTAACTGGTCTATCCAAGAAGAGAGGAATAATATCGACTCTAGCTGAAATCGCCTGGAA
GCTTTGGTAGGTTTAGAGTTAGCCATTCTGATATGAAGCATTGTTAGGAAAAAATCATGATAAAAATAAATCCATTATAG
TATCAAGCATCGCAAGGATAAGATCATGGTGAAATG-CCTTCTGATGCAAAAT-GCACAAGGAGAAGGTTATGCCAGAAA
TTGCACACACAATCTGGGCCTCCAGAACATCGTACCACAGTTTCTCCAGAAAAGTAAATGAGAAGGATTTGAATTGGGGA
GACTTAACATTCTAGAACCCAGAGGCCAAAGGTCACAAGTGGGACTTCACAGA
>SNPs
--------------------------------------------------------S-----------------------
---------S--S--------S----------------SS-S-----------SSSSSS--S-----S------------
-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------S-------------SSS
S-------------------------------------S--S---S-----SS-----S-SSSSS--------------S
--S--S-----------S------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSS--S-------S---------S---S
SS--S--SSS-----------------S-----------SSSSSSS---S---------------S----------S---
-----SS--SS-SSSS-SSSSSSSSS--SSS-S-S--SSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S------S--S---------------------S--S--
SS-SSSS-S-SSS--S-SSSSSSSSS--SSSSSSSSSSS-SSSS-SSS-S--SSSS-SSS-SS-SS-SSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSS-----------------------S-----------------------S-----------
------------------------------------------------------------S---S---------------
----------------------S--------S-----SS-----------------------S-----------------
--------S----------S---------------------------SS-------S-----------------------
------------------S-------------SS--------------S---------------------S---------
----------S--------------------------------S--S-----S-----------SS-S-------S----
---------------------------S----------S------------------------------S----------
---------------------------S----------------------------------------------------
--------------------------------S----------------------S------------------------
-----S--------------------------------------------------------------------------
---------------------S----------------------------------------------------------
---------------------------------------------------------------S------S---------
--S-----------------------------------------------------------S---------------SS
S-S---------S---------------------------------------S---------------------------
-------S-----S---S-------S------------------------------------------------------
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----------------------------------S------------------S--------------------------
-S---------S-------------------------S------------------------------S-----------
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-------------------------S----------------S--------------------------------S----
-------S-----------------------------S----------S-S------------SS---------------
--S-----S-----------------S-----------------------------------------------------
----------S---------------------S-------------S---------------------------------
--------------S-----------SS------SSS---------------SS------------S-------------
------------------------------------------------------------------S-------------
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>forward_510
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----------GACGTCGATAACTGCCCGAT--------------------------------------------------
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>reverse_1606
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-----CGAGCAGGTGAAGAACTGGA-------------------------------------------------------
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>forward_538
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--------------------------------------TGTAGTAACACCGCCCACAC----------------------
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>reverse_1903
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--------------------------------------------------------------CACATGAGTCGGAGGCTT
GG------------------------------------------------------------------------------
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>forward_735
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---------------------------------------------------------------------------AAATG
GTTGCAGCACTGTCG-----------------------------------------------------------------
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>reverse_3157
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------------------------------------CCCTTCTGATGCAAAACGGC------------------------
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