Multiple sequence alignment - TraesCS1A01G232500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G232500 chr1A 100.000 2555 0 0 1 2555 405867973 405870527 0.000000e+00 4719.0
1 TraesCS1A01G232500 chr1A 93.939 66 4 0 1149 1214 406143330 406143395 1.620000e-17 100.0
2 TraesCS1A01G232500 chr1B 91.797 1597 89 16 743 2313 434835118 434836698 0.000000e+00 2185.0
3 TraesCS1A01G232500 chr1B 87.725 611 36 13 52 653 434834471 434835051 0.000000e+00 676.0
4 TraesCS1A01G232500 chr1B 92.424 66 5 0 1149 1214 435043020 435043085 7.530000e-16 95.3
5 TraesCS1A01G232500 chr1D 91.599 1595 81 19 743 2313 322164836 322166401 0.000000e+00 2154.0
6 TraesCS1A01G232500 chr1D 86.416 692 40 21 52 720 322164193 322164853 0.000000e+00 708.0
7 TraesCS1A01G232500 chr1D 93.939 66 4 0 1149 1214 322262818 322262883 1.620000e-17 100.0
8 TraesCS1A01G232500 chr2D 74.176 364 79 12 2050 2409 616534240 616533888 1.230000e-28 137.0
9 TraesCS1A01G232500 chrUn 82.500 80 11 3 2009 2087 23399823 23399900 1.640000e-07 67.6
10 TraesCS1A01G232500 chr3A 100.000 32 0 0 23 54 146200822 146200791 2.750000e-05 60.2
11 TraesCS1A01G232500 chr6B 100.000 28 0 0 23 50 703748779 703748806 5.000000e-03 52.8
12 TraesCS1A01G232500 chr6A 100.000 28 0 0 23 50 611569700 611569727 5.000000e-03 52.8
13 TraesCS1A01G232500 chr2B 100.000 28 0 0 23 50 49411087 49411114 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G232500 chr1A 405867973 405870527 2554 False 4719.0 4719 100.0000 1 2555 1 chr1A.!!$F1 2554
1 TraesCS1A01G232500 chr1B 434834471 434836698 2227 False 1430.5 2185 89.7610 52 2313 2 chr1B.!!$F2 2261
2 TraesCS1A01G232500 chr1D 322164193 322166401 2208 False 1431.0 2154 89.0075 52 2313 2 chr1D.!!$F2 2261

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
126 132 0.31812 TTTCGTACAAGTCCGGTCCC 59.682 55.0 0.0 0.0 0.0 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1912 1974 0.252742 AGAGGGGTGACGGAGGAATT 60.253 55.0 0.0 0.0 0.0 2.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.640597 GCTTATTTAGGTTAGAATGGGTTGT 57.359 36.000 0.00 0.00 0.00 3.32
25 26 7.480810 GCTTATTTAGGTTAGAATGGGTTGTG 58.519 38.462 0.00 0.00 0.00 3.33
26 27 7.122204 GCTTATTTAGGTTAGAATGGGTTGTGT 59.878 37.037 0.00 0.00 0.00 3.72
27 28 8.943594 TTATTTAGGTTAGAATGGGTTGTGTT 57.056 30.769 0.00 0.00 0.00 3.32
29 30 7.989416 TTTAGGTTAGAATGGGTTGTGTTAG 57.011 36.000 0.00 0.00 0.00 2.34
30 31 5.836024 AGGTTAGAATGGGTTGTGTTAGA 57.164 39.130 0.00 0.00 0.00 2.10
31 32 5.805728 AGGTTAGAATGGGTTGTGTTAGAG 58.194 41.667 0.00 0.00 0.00 2.43
32 33 5.309806 AGGTTAGAATGGGTTGTGTTAGAGT 59.690 40.000 0.00 0.00 0.00 3.24
33 34 6.499350 AGGTTAGAATGGGTTGTGTTAGAGTA 59.501 38.462 0.00 0.00 0.00 2.59
34 35 7.182206 AGGTTAGAATGGGTTGTGTTAGAGTAT 59.818 37.037 0.00 0.00 0.00 2.12
35 36 7.494952 GGTTAGAATGGGTTGTGTTAGAGTATC 59.505 40.741 0.00 0.00 0.00 2.24
36 37 5.990668 AGAATGGGTTGTGTTAGAGTATCC 58.009 41.667 0.00 0.00 33.66 2.59
37 38 5.487488 AGAATGGGTTGTGTTAGAGTATCCA 59.513 40.000 0.00 0.00 33.66 3.41
38 39 5.772393 ATGGGTTGTGTTAGAGTATCCAA 57.228 39.130 0.00 0.00 33.66 3.53
39 40 5.570205 TGGGTTGTGTTAGAGTATCCAAA 57.430 39.130 0.00 0.00 33.66 3.28
40 41 5.310451 TGGGTTGTGTTAGAGTATCCAAAC 58.690 41.667 0.00 0.00 33.66 2.93
41 42 5.163184 TGGGTTGTGTTAGAGTATCCAAACA 60.163 40.000 0.00 0.00 38.63 2.83
42 43 5.411669 GGGTTGTGTTAGAGTATCCAAACAG 59.588 44.000 0.00 0.00 40.68 3.16
43 44 5.411669 GGTTGTGTTAGAGTATCCAAACAGG 59.588 44.000 0.00 0.00 40.68 4.00
44 45 5.160607 TGTGTTAGAGTATCCAAACAGGG 57.839 43.478 0.00 0.00 40.68 4.45
45 46 3.939592 GTGTTAGAGTATCCAAACAGGGC 59.060 47.826 0.00 0.00 40.68 5.19
46 47 3.054655 TGTTAGAGTATCCAAACAGGGCC 60.055 47.826 0.00 0.00 36.81 5.80
47 48 1.668826 AGAGTATCCAAACAGGGCCA 58.331 50.000 6.18 0.00 38.24 5.36
48 49 1.282157 AGAGTATCCAAACAGGGCCAC 59.718 52.381 6.18 0.00 38.24 5.01
49 50 1.282157 GAGTATCCAAACAGGGCCACT 59.718 52.381 6.18 0.00 38.24 4.00
50 51 2.504175 GAGTATCCAAACAGGGCCACTA 59.496 50.000 6.18 0.00 38.24 2.74
82 83 1.323412 TGGTCCAAAATTCCACACGG 58.677 50.000 0.00 0.00 0.00 4.94
92 93 1.448119 TTCCACACGGAATTGCGCAA 61.448 50.000 27.24 27.24 46.79 4.85
105 106 2.574929 CGCAAGGCCGTACCACTA 59.425 61.111 0.00 0.00 43.14 2.74
107 108 0.461339 CGCAAGGCCGTACCACTATT 60.461 55.000 0.00 0.00 43.14 1.73
110 111 2.096980 GCAAGGCCGTACCACTATTTTC 59.903 50.000 0.00 0.00 43.14 2.29
111 112 2.304751 AGGCCGTACCACTATTTTCG 57.695 50.000 0.00 0.00 43.14 3.46
112 113 1.551883 AGGCCGTACCACTATTTTCGT 59.448 47.619 0.00 0.00 43.14 3.85
114 115 2.860136 GGCCGTACCACTATTTTCGTAC 59.140 50.000 0.00 0.00 38.86 3.67
126 132 0.318120 TTTCGTACAAGTCCGGTCCC 59.682 55.000 0.00 0.00 0.00 4.46
156 162 1.595109 CTGGATCAAGCGGCGCATA 60.595 57.895 35.02 18.83 0.00 3.14
157 163 1.835483 CTGGATCAAGCGGCGCATAC 61.835 60.000 35.02 19.97 0.00 2.39
220 226 1.656652 TACTACTCCTGCCGTACGAC 58.343 55.000 18.76 5.50 0.00 4.34
260 266 1.375551 TCGACTATGCACGCTGACTA 58.624 50.000 0.00 0.00 0.00 2.59
276 282 2.568062 TGACTAACGGGCTATGACCAAA 59.432 45.455 0.00 0.00 0.00 3.28
279 285 0.675522 AACGGGCTATGACCAAACGG 60.676 55.000 0.00 0.00 0.00 4.44
283 289 1.376609 GGCTATGACCAAACGGGCTG 61.377 60.000 0.00 0.00 42.05 4.85
324 330 1.866015 TCACCCATCTTCCTCGTGAT 58.134 50.000 0.00 0.00 0.00 3.06
333 339 3.165875 TCTTCCTCGTGATGGTTTCTCT 58.834 45.455 0.00 0.00 0.00 3.10
334 340 3.056536 TCTTCCTCGTGATGGTTTCTCTG 60.057 47.826 0.00 0.00 0.00 3.35
338 344 4.282449 TCCTCGTGATGGTTTCTCTGTTTA 59.718 41.667 0.00 0.00 0.00 2.01
340 346 5.643777 CCTCGTGATGGTTTCTCTGTTTATT 59.356 40.000 0.00 0.00 0.00 1.40
341 347 6.183360 CCTCGTGATGGTTTCTCTGTTTATTC 60.183 42.308 0.00 0.00 0.00 1.75
342 348 6.464222 TCGTGATGGTTTCTCTGTTTATTCT 58.536 36.000 0.00 0.00 0.00 2.40
343 349 6.368791 TCGTGATGGTTTCTCTGTTTATTCTG 59.631 38.462 0.00 0.00 0.00 3.02
344 350 6.147821 CGTGATGGTTTCTCTGTTTATTCTGT 59.852 38.462 0.00 0.00 0.00 3.41
345 351 7.522374 GTGATGGTTTCTCTGTTTATTCTGTC 58.478 38.462 0.00 0.00 0.00 3.51
346 352 7.173218 GTGATGGTTTCTCTGTTTATTCTGTCA 59.827 37.037 0.00 0.00 0.00 3.58
347 353 7.719193 TGATGGTTTCTCTGTTTATTCTGTCAA 59.281 33.333 0.00 0.00 0.00 3.18
348 354 7.873719 TGGTTTCTCTGTTTATTCTGTCAAA 57.126 32.000 0.00 0.00 0.00 2.69
349 355 8.463930 TGGTTTCTCTGTTTATTCTGTCAAAT 57.536 30.769 0.00 0.00 0.00 2.32
350 356 8.567948 TGGTTTCTCTGTTTATTCTGTCAAATC 58.432 33.333 0.00 0.00 0.00 2.17
351 357 8.567948 GGTTTCTCTGTTTATTCTGTCAAATCA 58.432 33.333 0.00 0.00 0.00 2.57
352 358 9.950680 GTTTCTCTGTTTATTCTGTCAAATCAA 57.049 29.630 0.00 0.00 0.00 2.57
353 359 9.950680 TTTCTCTGTTTATTCTGTCAAATCAAC 57.049 29.630 0.00 0.00 0.00 3.18
354 360 8.675705 TCTCTGTTTATTCTGTCAAATCAACA 57.324 30.769 0.00 0.00 33.78 3.33
355 361 9.119418 TCTCTGTTTATTCTGTCAAATCAACAA 57.881 29.630 0.00 0.00 34.22 2.83
356 362 9.390795 CTCTGTTTATTCTGTCAAATCAACAAG 57.609 33.333 0.00 0.00 34.22 3.16
357 363 8.902806 TCTGTTTATTCTGTCAAATCAACAAGT 58.097 29.630 0.00 0.00 34.22 3.16
358 364 9.173939 CTGTTTATTCTGTCAAATCAACAAGTC 57.826 33.333 0.00 0.00 34.22 3.01
359 365 8.134895 TGTTTATTCTGTCAAATCAACAAGTCC 58.865 33.333 0.00 0.00 32.58 3.85
360 366 5.712152 ATTCTGTCAAATCAACAAGTCCC 57.288 39.130 0.00 0.00 0.00 4.46
361 367 4.437682 TCTGTCAAATCAACAAGTCCCT 57.562 40.909 0.00 0.00 0.00 4.20
362 368 5.560722 TCTGTCAAATCAACAAGTCCCTA 57.439 39.130 0.00 0.00 0.00 3.53
363 369 6.126863 TCTGTCAAATCAACAAGTCCCTAT 57.873 37.500 0.00 0.00 0.00 2.57
364 370 6.173339 TCTGTCAAATCAACAAGTCCCTATC 58.827 40.000 0.00 0.00 0.00 2.08
365 371 6.013379 TCTGTCAAATCAACAAGTCCCTATCT 60.013 38.462 0.00 0.00 0.00 1.98
366 372 6.542821 TGTCAAATCAACAAGTCCCTATCTT 58.457 36.000 0.00 0.00 0.00 2.40
367 373 7.004086 TGTCAAATCAACAAGTCCCTATCTTT 58.996 34.615 0.00 0.00 0.00 2.52
368 374 7.040478 TGTCAAATCAACAAGTCCCTATCTTTG 60.040 37.037 0.00 0.00 0.00 2.77
401 407 1.342074 GCTCTTCCCTTTGCCCTTTT 58.658 50.000 0.00 0.00 0.00 2.27
410 416 1.953686 CTTTGCCCTTTTTCTGACGGA 59.046 47.619 0.00 0.00 0.00 4.69
515 525 2.285834 GCACACGATCGATCAAACCATC 60.286 50.000 24.34 4.13 0.00 3.51
545 555 1.451028 CCTGCCTTGACTAGCCAGC 60.451 63.158 0.00 0.00 0.00 4.85
548 558 0.906756 TGCCTTGACTAGCCAGCTCT 60.907 55.000 0.00 0.00 0.00 4.09
561 571 4.959723 AGCCAGCTCTATTCTTCTGATTC 58.040 43.478 0.00 0.00 0.00 2.52
617 627 6.668323 CCAGTGTCAACTCGAAATTGTATTT 58.332 36.000 8.49 0.00 32.98 1.40
618 628 7.572353 GCCAGTGTCAACTCGAAATTGTATTTA 60.572 37.037 8.49 0.00 32.98 1.40
620 630 9.825972 CAGTGTCAACTCGAAATTGTATTTATT 57.174 29.630 8.49 0.00 32.98 1.40
654 664 5.240623 TGCGAGGACTTTGAATTGTATTTGT 59.759 36.000 0.00 0.00 0.00 2.83
655 665 5.569059 GCGAGGACTTTGAATTGTATTTGTG 59.431 40.000 0.00 0.00 0.00 3.33
657 667 5.460646 AGGACTTTGAATTGTATTTGTGCG 58.539 37.500 0.00 0.00 0.00 5.34
659 669 5.569059 GGACTTTGAATTGTATTTGTGCGAG 59.431 40.000 0.00 0.00 0.00 5.03
660 670 5.460646 ACTTTGAATTGTATTTGTGCGAGG 58.539 37.500 0.00 0.00 0.00 4.63
662 672 4.678509 TGAATTGTATTTGTGCGAGGAC 57.321 40.909 0.00 0.00 0.00 3.85
664 674 4.759693 TGAATTGTATTTGTGCGAGGACTT 59.240 37.500 0.00 0.00 0.00 3.01
665 675 5.240623 TGAATTGTATTTGTGCGAGGACTTT 59.759 36.000 0.00 0.00 0.00 2.66
667 677 3.734463 TGTATTTGTGCGAGGACTTTGA 58.266 40.909 0.00 0.00 0.00 2.69
668 678 4.130857 TGTATTTGTGCGAGGACTTTGAA 58.869 39.130 0.00 0.00 0.00 2.69
669 679 4.759693 TGTATTTGTGCGAGGACTTTGAAT 59.240 37.500 0.00 0.00 0.00 2.57
671 681 3.624326 TTGTGCGAGGACTTTGAATTG 57.376 42.857 0.00 0.00 0.00 2.32
687 712 7.434013 ACTTTGAATTGTACACGGTGAATTTTC 59.566 33.333 16.29 10.86 0.00 2.29
701 726 3.244422 TGAATTTTCACTCCCTGCGTACT 60.244 43.478 0.00 0.00 31.01 2.73
705 730 3.354948 TTCACTCCCTGCGTACTAGTA 57.645 47.619 0.00 0.00 0.00 1.82
706 731 2.636830 TCACTCCCTGCGTACTAGTAC 58.363 52.381 21.06 21.06 0.00 2.73
707 732 2.238144 TCACTCCCTGCGTACTAGTACT 59.762 50.000 26.36 0.00 34.04 2.73
708 733 2.613133 CACTCCCTGCGTACTAGTACTC 59.387 54.545 26.36 20.80 34.04 2.59
709 734 1.865970 CTCCCTGCGTACTAGTACTCG 59.134 57.143 26.36 17.44 34.04 4.18
710 735 1.208052 TCCCTGCGTACTAGTACTCGT 59.792 52.381 26.36 0.95 34.04 4.18
711 736 2.430694 TCCCTGCGTACTAGTACTCGTA 59.569 50.000 26.36 15.21 34.04 3.43
712 737 2.541762 CCCTGCGTACTAGTACTCGTAC 59.458 54.545 26.36 21.86 34.04 3.67
713 738 3.190079 CCTGCGTACTAGTACTCGTACA 58.810 50.000 27.62 16.32 38.48 2.90
714 739 3.244814 CCTGCGTACTAGTACTCGTACAG 59.755 52.174 27.62 22.09 38.48 2.74
715 740 3.849911 TGCGTACTAGTACTCGTACAGT 58.150 45.455 27.62 16.38 38.48 3.55
716 741 4.993905 TGCGTACTAGTACTCGTACAGTA 58.006 43.478 27.62 19.56 38.48 2.74
726 751 2.615912 ACTCGTACAGTACTATTCCCGC 59.384 50.000 9.10 0.00 31.37 6.13
727 752 2.615447 CTCGTACAGTACTATTCCCGCA 59.385 50.000 9.10 0.00 0.00 5.69
728 753 3.016031 TCGTACAGTACTATTCCCGCAA 58.984 45.455 9.10 0.00 0.00 4.85
729 754 3.111098 CGTACAGTACTATTCCCGCAAC 58.889 50.000 9.10 0.00 0.00 4.17
730 755 3.427909 CGTACAGTACTATTCCCGCAACA 60.428 47.826 9.10 0.00 0.00 3.33
731 756 3.688694 ACAGTACTATTCCCGCAACAA 57.311 42.857 0.00 0.00 0.00 2.83
732 757 3.332034 ACAGTACTATTCCCGCAACAAC 58.668 45.455 0.00 0.00 0.00 3.32
733 758 3.244284 ACAGTACTATTCCCGCAACAACA 60.244 43.478 0.00 0.00 0.00 3.33
734 759 3.749088 CAGTACTATTCCCGCAACAACAA 59.251 43.478 0.00 0.00 0.00 2.83
735 760 3.749609 AGTACTATTCCCGCAACAACAAC 59.250 43.478 0.00 0.00 0.00 3.32
736 761 2.577700 ACTATTCCCGCAACAACAACA 58.422 42.857 0.00 0.00 0.00 3.33
737 762 2.952978 ACTATTCCCGCAACAACAACAA 59.047 40.909 0.00 0.00 0.00 2.83
738 763 2.969628 ATTCCCGCAACAACAACAAA 57.030 40.000 0.00 0.00 0.00 2.83
739 764 2.743636 TTCCCGCAACAACAACAAAA 57.256 40.000 0.00 0.00 0.00 2.44
740 765 2.743636 TCCCGCAACAACAACAAAAA 57.256 40.000 0.00 0.00 0.00 1.94
846 874 3.151958 AACAGTCGACGCCAGCACT 62.152 57.895 10.46 0.00 0.00 4.40
877 905 3.472652 CAGCACGGCCTATAAAATACCA 58.527 45.455 0.00 0.00 0.00 3.25
886 915 6.347079 CGGCCTATAAAATACCACACGTATTG 60.347 42.308 0.00 0.00 45.17 1.90
892 921 5.773239 AAATACCACACGTATTGTTCGAG 57.227 39.130 0.00 0.00 45.17 4.04
932 964 3.831911 CTCTCTTTGTCTTGTCTCCCTCT 59.168 47.826 0.00 0.00 0.00 3.69
937 969 3.080300 TGTCTTGTCTCCCTCTCTCTC 57.920 52.381 0.00 0.00 0.00 3.20
940 972 3.054361 GTCTTGTCTCCCTCTCTCTCTCT 60.054 52.174 0.00 0.00 0.00 3.10
950 992 4.222336 CCTCTCTCTCTCTCTCTCTCTCT 58.778 52.174 0.00 0.00 0.00 3.10
952 994 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
954 996 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
956 998 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
962 1006 4.009675 TCTCTCTCTCTCTCTCTTGCAAC 58.990 47.826 0.00 0.00 0.00 4.17
1044 1088 2.753029 GAGGCTTCACCAGTGGCT 59.247 61.111 9.78 0.00 43.14 4.75
1069 1113 2.028484 GCGAGTCCACAACGTCCA 59.972 61.111 0.00 0.00 0.00 4.02
1103 1147 2.125512 AGCGCCATTGTCCGACTC 60.126 61.111 2.29 0.00 0.00 3.36
1104 1148 3.195698 GCGCCATTGTCCGACTCC 61.196 66.667 0.00 0.00 0.00 3.85
1105 1149 2.885644 CGCCATTGTCCGACTCCG 60.886 66.667 0.00 0.00 0.00 4.63
1106 1150 2.577059 GCCATTGTCCGACTCCGA 59.423 61.111 0.00 0.00 38.22 4.55
1107 1151 1.810030 GCCATTGTCCGACTCCGAC 60.810 63.158 0.00 0.00 38.22 4.79
1108 1152 1.890894 CCATTGTCCGACTCCGACT 59.109 57.895 0.00 0.00 38.22 4.18
1109 1153 0.246635 CCATTGTCCGACTCCGACTT 59.753 55.000 0.00 0.00 38.22 3.01
1110 1154 1.350193 CATTGTCCGACTCCGACTTG 58.650 55.000 0.00 0.00 38.22 3.16
1111 1155 0.246635 ATTGTCCGACTCCGACTTGG 59.753 55.000 0.00 0.00 38.22 3.61
1112 1156 1.111116 TTGTCCGACTCCGACTTGGT 61.111 55.000 0.00 0.00 39.52 3.67
1519 1566 3.501828 TCCAACAAATTGTCTGGACGATG 59.498 43.478 18.97 5.05 34.78 3.84
1578 1633 3.220110 AGATTTGCCATCTGCCATGTAG 58.780 45.455 0.00 0.00 40.16 2.74
1579 1634 2.512692 TTTGCCATCTGCCATGTAGT 57.487 45.000 0.00 0.00 40.16 2.73
1580 1635 3.643199 TTTGCCATCTGCCATGTAGTA 57.357 42.857 0.00 0.00 40.16 1.82
1753 1813 3.880490 ACAAGCTACCAAACGACAAATCA 59.120 39.130 0.00 0.00 0.00 2.57
1788 1848 6.455360 TCATAGAAGGGCAAAATGAATGAC 57.545 37.500 0.00 0.00 0.00 3.06
1862 1922 1.446272 GTGACTTTCTCTCCGGGCG 60.446 63.158 0.00 0.00 0.00 6.13
1891 1953 2.426738 GACCATCGGGAAATGCATGAAA 59.573 45.455 0.00 0.00 38.05 2.69
1892 1954 2.830923 ACCATCGGGAAATGCATGAAAA 59.169 40.909 0.00 0.00 38.05 2.29
1893 1955 3.119029 ACCATCGGGAAATGCATGAAAAG 60.119 43.478 0.00 0.00 38.05 2.27
1932 1994 0.252742 ATTCCTCCGTCACCCCTCTT 60.253 55.000 0.00 0.00 0.00 2.85
1940 2002 1.064825 GTCACCCCTCTTTCTTCCCA 58.935 55.000 0.00 0.00 0.00 4.37
1978 2040 1.117142 TCTCCCCAAGGTTTCGTCGT 61.117 55.000 0.00 0.00 0.00 4.34
2006 2068 3.806521 CCATAGATCGCTTCCTCTTTGTG 59.193 47.826 0.00 0.00 0.00 3.33
2027 2089 2.451493 TGGTGGCAAGGAGGGGAA 60.451 61.111 0.00 0.00 0.00 3.97
2034 2096 1.034292 GCAAGGAGGGGAATCACAGC 61.034 60.000 0.00 0.00 0.00 4.40
2067 2129 4.961099 CCAGCTAGTAGTTTAGGTTAGGGT 59.039 45.833 0.00 0.00 29.37 4.34
2080 2142 5.354842 AGGTTAGGGTTTTCTAATCCTCG 57.645 43.478 0.00 0.00 41.15 4.63
2090 2152 0.824109 CTAATCCTCGCAGGTGTGGA 59.176 55.000 6.15 6.15 36.53 4.02
2101 2163 1.607467 GGTGTGGAGCTTTGGGCAT 60.607 57.895 0.00 0.00 44.79 4.40
2104 2166 2.102578 GTGTGGAGCTTTGGGCATATT 58.897 47.619 0.00 0.00 44.79 1.28
2139 2201 6.179906 TCTTTGAGTTTGTCTTCTGGATCT 57.820 37.500 0.00 0.00 0.00 2.75
2158 2220 6.045955 GGATCTGATCCTACTTGAGTTTGTC 58.954 44.000 25.93 0.00 46.19 3.18
2164 2226 5.152623 TCCTACTTGAGTTTGTCCATCTG 57.847 43.478 0.00 0.00 0.00 2.90
2165 2227 4.593206 TCCTACTTGAGTTTGTCCATCTGT 59.407 41.667 0.00 0.00 0.00 3.41
2201 2263 2.288825 GCCTACGCATAGATTACTGCCA 60.289 50.000 0.00 0.00 34.89 4.92
2206 2268 2.919859 CGCATAGATTACTGCCATCTCG 59.080 50.000 0.00 0.00 34.89 4.04
2232 2294 1.519408 CGGTGTGGTTAGGGTTCTTG 58.481 55.000 0.00 0.00 0.00 3.02
2238 2300 1.764134 TGGTTAGGGTTCTTGTCGTGT 59.236 47.619 0.00 0.00 0.00 4.49
2281 2343 3.799420 GTGTCGGTTGCTTCAGATCTATC 59.201 47.826 0.00 0.00 0.00 2.08
2288 2350 3.387962 TGCTTCAGATCTATCCAAGGGT 58.612 45.455 0.00 0.00 0.00 4.34
2301 2363 1.300388 AAGGGTTCAACGACGACGG 60.300 57.895 12.58 0.00 44.46 4.79
2307 2369 3.334751 CAACGACGACGGCTGCAA 61.335 61.111 12.58 0.00 44.46 4.08
2313 2375 2.664851 CGACGGCTGCAACTCCAA 60.665 61.111 0.50 0.00 0.00 3.53
2314 2376 2.671177 CGACGGCTGCAACTCCAAG 61.671 63.158 0.50 0.00 0.00 3.61
2315 2377 2.281761 ACGGCTGCAACTCCAAGG 60.282 61.111 0.50 0.00 0.00 3.61
2316 2378 2.281761 CGGCTGCAACTCCAAGGT 60.282 61.111 0.50 0.00 0.00 3.50
2317 2379 2.620112 CGGCTGCAACTCCAAGGTG 61.620 63.158 0.50 0.00 35.59 4.00
2322 2384 3.359002 CAACTCCAAGGTGCTGGC 58.641 61.111 0.00 0.00 36.32 4.85
2323 2385 2.116125 AACTCCAAGGTGCTGGCC 59.884 61.111 0.00 0.00 36.32 5.36
2324 2386 3.513750 AACTCCAAGGTGCTGGCCC 62.514 63.158 0.00 0.00 36.32 5.80
2325 2387 3.655211 CTCCAAGGTGCTGGCCCT 61.655 66.667 0.00 0.00 36.32 5.19
2326 2388 3.185203 TCCAAGGTGCTGGCCCTT 61.185 61.111 0.00 8.73 43.11 3.95
2327 2389 1.850289 TCCAAGGTGCTGGCCCTTA 60.850 57.895 0.00 0.00 40.35 2.69
2328 2390 1.379044 CCAAGGTGCTGGCCCTTAG 60.379 63.158 0.00 0.00 40.35 2.18
2329 2391 1.379044 CAAGGTGCTGGCCCTTAGG 60.379 63.158 0.00 0.00 40.35 2.69
2340 2402 2.267961 CCTTAGGGGCACGTGGAC 59.732 66.667 18.88 0.44 0.00 4.02
2341 2403 2.125673 CTTAGGGGCACGTGGACG 60.126 66.667 18.88 0.00 46.33 4.79
2342 2404 2.601067 TTAGGGGCACGTGGACGA 60.601 61.111 18.88 0.00 43.02 4.20
2343 2405 2.162338 CTTAGGGGCACGTGGACGAA 62.162 60.000 18.88 0.00 43.02 3.85
2344 2406 1.756408 TTAGGGGCACGTGGACGAAA 61.756 55.000 18.88 0.00 43.02 3.46
2345 2407 1.756408 TAGGGGCACGTGGACGAAAA 61.756 55.000 18.88 0.00 43.02 2.29
2346 2408 2.635338 GGGCACGTGGACGAAAAC 59.365 61.111 18.88 0.00 43.02 2.43
2347 2409 1.890510 GGGCACGTGGACGAAAACT 60.891 57.895 18.88 0.00 43.02 2.66
2348 2410 1.441732 GGGCACGTGGACGAAAACTT 61.442 55.000 18.88 0.00 43.02 2.66
2349 2411 0.379316 GGCACGTGGACGAAAACTTT 59.621 50.000 18.88 0.00 43.02 2.66
2350 2412 1.596220 GGCACGTGGACGAAAACTTTC 60.596 52.381 18.88 0.00 43.02 2.62
2351 2413 1.596220 GCACGTGGACGAAAACTTTCC 60.596 52.381 18.88 0.00 43.02 3.13
2352 2414 0.932399 ACGTGGACGAAAACTTTCCG 59.068 50.000 6.12 0.00 43.02 4.30
2353 2415 1.210870 CGTGGACGAAAACTTTCCGA 58.789 50.000 0.00 0.00 43.02 4.55
2354 2416 1.071041 CGTGGACGAAAACTTTCCGAC 60.071 52.381 0.00 0.00 43.02 4.79
2355 2417 2.207590 GTGGACGAAAACTTTCCGACT 58.792 47.619 0.00 0.00 33.68 4.18
2356 2418 2.033151 GTGGACGAAAACTTTCCGACTG 60.033 50.000 0.00 0.00 33.68 3.51
2357 2419 2.207590 GGACGAAAACTTTCCGACTGT 58.792 47.619 0.00 0.00 33.68 3.55
2358 2420 2.220363 GGACGAAAACTTTCCGACTGTC 59.780 50.000 0.00 0.00 33.68 3.51
2359 2421 2.861935 GACGAAAACTTTCCGACTGTCA 59.138 45.455 8.73 0.00 33.68 3.58
2360 2422 3.463944 ACGAAAACTTTCCGACTGTCAT 58.536 40.909 8.73 0.00 33.68 3.06
2361 2423 3.493503 ACGAAAACTTTCCGACTGTCATC 59.506 43.478 8.73 0.00 33.68 2.92
2362 2424 3.120649 CGAAAACTTTCCGACTGTCATCC 60.121 47.826 8.73 0.00 33.68 3.51
2363 2425 3.485463 AAACTTTCCGACTGTCATCCA 57.515 42.857 8.73 0.00 0.00 3.41
2364 2426 3.703001 AACTTTCCGACTGTCATCCAT 57.297 42.857 8.73 0.00 0.00 3.41
2365 2427 4.819105 AACTTTCCGACTGTCATCCATA 57.181 40.909 8.73 0.00 0.00 2.74
2366 2428 4.819105 ACTTTCCGACTGTCATCCATAA 57.181 40.909 8.73 0.00 0.00 1.90
2367 2429 4.759782 ACTTTCCGACTGTCATCCATAAG 58.240 43.478 8.73 4.95 0.00 1.73
2368 2430 3.819564 TTCCGACTGTCATCCATAAGG 57.180 47.619 8.73 0.00 0.00 2.69
2369 2431 2.747177 TCCGACTGTCATCCATAAGGT 58.253 47.619 8.73 0.00 35.89 3.50
2370 2432 2.693591 TCCGACTGTCATCCATAAGGTC 59.306 50.000 8.73 0.00 35.89 3.85
2371 2433 2.430694 CCGACTGTCATCCATAAGGTCA 59.569 50.000 8.73 0.00 35.89 4.02
2372 2434 3.118775 CCGACTGTCATCCATAAGGTCAA 60.119 47.826 8.73 0.00 35.89 3.18
2373 2435 4.115516 CGACTGTCATCCATAAGGTCAAG 58.884 47.826 8.73 0.00 35.89 3.02
2374 2436 4.382040 CGACTGTCATCCATAAGGTCAAGT 60.382 45.833 8.73 0.00 35.89 3.16
2375 2437 5.491982 GACTGTCATCCATAAGGTCAAGTT 58.508 41.667 2.24 0.00 35.89 2.66
2376 2438 5.248640 ACTGTCATCCATAAGGTCAAGTTG 58.751 41.667 0.00 0.00 35.89 3.16
2377 2439 5.013079 ACTGTCATCCATAAGGTCAAGTTGA 59.987 40.000 0.08 0.08 35.89 3.18
2378 2440 5.245531 TGTCATCCATAAGGTCAAGTTGAC 58.754 41.667 25.00 25.00 46.23 3.18
2379 2441 5.013079 TGTCATCCATAAGGTCAAGTTGACT 59.987 40.000 29.89 17.16 46.19 3.41
2380 2442 5.582665 GTCATCCATAAGGTCAAGTTGACTC 59.417 44.000 29.89 21.26 46.19 3.36
2381 2443 5.485353 TCATCCATAAGGTCAAGTTGACTCT 59.515 40.000 29.89 22.81 46.19 3.24
2382 2444 6.667848 TCATCCATAAGGTCAAGTTGACTCTA 59.332 38.462 29.89 21.95 46.19 2.43
2383 2445 6.531503 TCCATAAGGTCAAGTTGACTCTAG 57.468 41.667 29.89 17.93 46.19 2.43
2384 2446 6.017192 TCCATAAGGTCAAGTTGACTCTAGT 58.983 40.000 29.89 15.97 46.19 2.57
2385 2447 7.179966 TCCATAAGGTCAAGTTGACTCTAGTA 58.820 38.462 29.89 17.23 46.19 1.82
2386 2448 7.339721 TCCATAAGGTCAAGTTGACTCTAGTAG 59.660 40.741 29.89 16.30 46.19 2.57
2387 2449 5.986501 AAGGTCAAGTTGACTCTAGTAGG 57.013 43.478 29.89 0.00 46.19 3.18
2388 2450 4.345854 AGGTCAAGTTGACTCTAGTAGGG 58.654 47.826 29.89 0.00 46.19 3.53
2389 2451 3.447944 GGTCAAGTTGACTCTAGTAGGGG 59.552 52.174 29.89 0.00 46.19 4.79
2390 2452 4.342359 GTCAAGTTGACTCTAGTAGGGGA 58.658 47.826 25.56 0.00 43.73 4.81
2391 2453 4.771054 GTCAAGTTGACTCTAGTAGGGGAA 59.229 45.833 25.56 0.00 43.73 3.97
2392 2454 4.771054 TCAAGTTGACTCTAGTAGGGGAAC 59.229 45.833 0.08 4.24 0.00 3.62
2393 2455 3.354467 AGTTGACTCTAGTAGGGGAACG 58.646 50.000 1.21 0.00 0.00 3.95
2394 2456 3.009916 AGTTGACTCTAGTAGGGGAACGA 59.990 47.826 1.21 0.00 0.00 3.85
2395 2457 2.996631 TGACTCTAGTAGGGGAACGAC 58.003 52.381 1.21 0.00 0.00 4.34
2396 2458 1.939255 GACTCTAGTAGGGGAACGACG 59.061 57.143 1.21 0.00 0.00 5.12
2397 2459 1.556911 ACTCTAGTAGGGGAACGACGA 59.443 52.381 0.00 0.00 0.00 4.20
2398 2460 1.939255 CTCTAGTAGGGGAACGACGAC 59.061 57.143 0.00 0.00 0.00 4.34
2399 2461 1.278985 TCTAGTAGGGGAACGACGACA 59.721 52.381 0.00 0.00 0.00 4.35
2400 2462 2.086869 CTAGTAGGGGAACGACGACAA 58.913 52.381 0.00 0.00 0.00 3.18
2401 2463 0.600057 AGTAGGGGAACGACGACAAC 59.400 55.000 0.00 0.00 0.00 3.32
2402 2464 0.730494 GTAGGGGAACGACGACAACG 60.730 60.000 0.00 0.00 45.75 4.10
2403 2465 1.865788 TAGGGGAACGACGACAACGG 61.866 60.000 0.00 0.00 44.46 4.44
2404 2466 3.408851 GGGAACGACGACAACGGC 61.409 66.667 0.00 0.00 45.02 5.68
2420 2482 3.044305 GCACGTCAGCGGCTTCTT 61.044 61.111 0.00 0.00 43.45 2.52
2421 2483 3.016474 GCACGTCAGCGGCTTCTTC 62.016 63.158 0.00 0.00 43.45 2.87
2422 2484 1.373497 CACGTCAGCGGCTTCTTCT 60.373 57.895 0.00 0.00 43.45 2.85
2423 2485 1.080434 ACGTCAGCGGCTTCTTCTC 60.080 57.895 0.00 0.00 43.45 2.87
2424 2486 2.155194 CGTCAGCGGCTTCTTCTCG 61.155 63.158 0.00 0.00 0.00 4.04
2425 2487 1.080434 GTCAGCGGCTTCTTCTCGT 60.080 57.895 0.00 0.00 0.00 4.18
2426 2488 1.080501 TCAGCGGCTTCTTCTCGTG 60.081 57.895 0.00 0.00 0.00 4.35
2427 2489 2.097038 CAGCGGCTTCTTCTCGTGG 61.097 63.158 0.00 0.00 0.00 4.94
2428 2490 3.491652 GCGGCTTCTTCTCGTGGC 61.492 66.667 0.00 0.00 0.00 5.01
2429 2491 3.181967 CGGCTTCTTCTCGTGGCG 61.182 66.667 0.00 0.00 41.56 5.69
2430 2492 2.815647 GGCTTCTTCTCGTGGCGG 60.816 66.667 0.00 0.00 0.00 6.13
2431 2493 2.048127 GCTTCTTCTCGTGGCGGT 60.048 61.111 0.00 0.00 0.00 5.68
2432 2494 2.383527 GCTTCTTCTCGTGGCGGTG 61.384 63.158 0.00 0.00 0.00 4.94
2433 2495 1.738099 CTTCTTCTCGTGGCGGTGG 60.738 63.158 0.00 0.00 0.00 4.61
2434 2496 2.436087 CTTCTTCTCGTGGCGGTGGT 62.436 60.000 0.00 0.00 0.00 4.16
2435 2497 2.709125 TTCTTCTCGTGGCGGTGGTG 62.709 60.000 0.00 0.00 0.00 4.17
2436 2498 4.308458 TTCTCGTGGCGGTGGTGG 62.308 66.667 0.00 0.00 0.00 4.61
2440 2502 4.619227 CGTGGCGGTGGTGGTCTT 62.619 66.667 0.00 0.00 0.00 3.01
2441 2503 2.668550 GTGGCGGTGGTGGTCTTC 60.669 66.667 0.00 0.00 0.00 2.87
2442 2504 3.164977 TGGCGGTGGTGGTCTTCA 61.165 61.111 0.00 0.00 0.00 3.02
2443 2505 2.112297 GGCGGTGGTGGTCTTCAA 59.888 61.111 0.00 0.00 0.00 2.69
2444 2506 1.303317 GGCGGTGGTGGTCTTCAAT 60.303 57.895 0.00 0.00 0.00 2.57
2445 2507 1.586154 GGCGGTGGTGGTCTTCAATG 61.586 60.000 0.00 0.00 0.00 2.82
2446 2508 1.586154 GCGGTGGTGGTCTTCAATGG 61.586 60.000 0.00 0.00 0.00 3.16
2447 2509 0.250727 CGGTGGTGGTCTTCAATGGT 60.251 55.000 0.00 0.00 0.00 3.55
2448 2510 1.534729 GGTGGTGGTCTTCAATGGTC 58.465 55.000 0.00 0.00 0.00 4.02
2449 2511 1.073923 GGTGGTGGTCTTCAATGGTCT 59.926 52.381 0.00 0.00 0.00 3.85
2450 2512 2.304761 GGTGGTGGTCTTCAATGGTCTA 59.695 50.000 0.00 0.00 0.00 2.59
2451 2513 3.600388 GTGGTGGTCTTCAATGGTCTAG 58.400 50.000 0.00 0.00 0.00 2.43
2452 2514 3.260884 GTGGTGGTCTTCAATGGTCTAGA 59.739 47.826 0.00 0.00 0.00 2.43
2453 2515 3.515502 TGGTGGTCTTCAATGGTCTAGAG 59.484 47.826 0.00 0.00 0.00 2.43
2454 2516 3.769844 GGTGGTCTTCAATGGTCTAGAGA 59.230 47.826 0.00 0.00 0.00 3.10
2455 2517 4.382147 GGTGGTCTTCAATGGTCTAGAGAC 60.382 50.000 0.75 0.75 44.04 3.36
2470 2532 6.797454 GTCTAGAGACCTCGATGTTATTTGT 58.203 40.000 0.00 0.00 39.07 2.83
2471 2533 7.928103 GTCTAGAGACCTCGATGTTATTTGTA 58.072 38.462 0.00 0.00 39.07 2.41
2472 2534 8.569641 GTCTAGAGACCTCGATGTTATTTGTAT 58.430 37.037 0.00 0.00 39.07 2.29
2473 2535 9.132923 TCTAGAGACCTCGATGTTATTTGTATT 57.867 33.333 0.00 0.00 34.09 1.89
2476 2538 9.698309 AGAGACCTCGATGTTATTTGTATTATG 57.302 33.333 0.00 0.00 34.09 1.90
2477 2539 8.311650 AGACCTCGATGTTATTTGTATTATGC 57.688 34.615 0.00 0.00 0.00 3.14
2478 2540 8.150945 AGACCTCGATGTTATTTGTATTATGCT 58.849 33.333 0.00 0.00 0.00 3.79
2479 2541 8.677148 ACCTCGATGTTATTTGTATTATGCTT 57.323 30.769 0.00 0.00 0.00 3.91
2480 2542 8.559536 ACCTCGATGTTATTTGTATTATGCTTG 58.440 33.333 0.00 0.00 0.00 4.01
2481 2543 8.559536 CCTCGATGTTATTTGTATTATGCTTGT 58.440 33.333 0.00 0.00 0.00 3.16
2482 2544 9.373750 CTCGATGTTATTTGTATTATGCTTGTG 57.626 33.333 0.00 0.00 0.00 3.33
2483 2545 8.341903 TCGATGTTATTTGTATTATGCTTGTGG 58.658 33.333 0.00 0.00 0.00 4.17
2484 2546 8.128582 CGATGTTATTTGTATTATGCTTGTGGT 58.871 33.333 0.00 0.00 0.00 4.16
2485 2547 9.236691 GATGTTATTTGTATTATGCTTGTGGTG 57.763 33.333 0.00 0.00 0.00 4.17
2486 2548 7.032580 TGTTATTTGTATTATGCTTGTGGTGC 58.967 34.615 0.00 0.00 0.00 5.01
2487 2549 5.920193 ATTTGTATTATGCTTGTGGTGCT 57.080 34.783 0.00 0.00 0.00 4.40
2488 2550 5.720371 TTTGTATTATGCTTGTGGTGCTT 57.280 34.783 0.00 0.00 0.00 3.91
2489 2551 5.720371 TTGTATTATGCTTGTGGTGCTTT 57.280 34.783 0.00 0.00 0.00 3.51
2490 2552 5.720371 TGTATTATGCTTGTGGTGCTTTT 57.280 34.783 0.00 0.00 0.00 2.27
2491 2553 5.708948 TGTATTATGCTTGTGGTGCTTTTC 58.291 37.500 0.00 0.00 0.00 2.29
2492 2554 3.658757 TTATGCTTGTGGTGCTTTTCC 57.341 42.857 0.00 0.00 0.00 3.13
2493 2555 0.314935 ATGCTTGTGGTGCTTTTCCG 59.685 50.000 0.00 0.00 0.00 4.30
2494 2556 0.749818 TGCTTGTGGTGCTTTTCCGA 60.750 50.000 0.00 0.00 0.00 4.55
2495 2557 0.598065 GCTTGTGGTGCTTTTCCGAT 59.402 50.000 0.00 0.00 0.00 4.18
2496 2558 1.666888 GCTTGTGGTGCTTTTCCGATG 60.667 52.381 0.00 0.00 0.00 3.84
2497 2559 0.958091 TTGTGGTGCTTTTCCGATGG 59.042 50.000 0.00 0.00 0.00 3.51
2498 2560 0.109532 TGTGGTGCTTTTCCGATGGA 59.890 50.000 0.00 0.00 0.00 3.41
2499 2561 0.521735 GTGGTGCTTTTCCGATGGAC 59.478 55.000 0.00 0.00 0.00 4.02
2500 2562 0.400213 TGGTGCTTTTCCGATGGACT 59.600 50.000 0.00 0.00 0.00 3.85
2501 2563 1.202879 TGGTGCTTTTCCGATGGACTT 60.203 47.619 0.00 0.00 0.00 3.01
2502 2564 1.468914 GGTGCTTTTCCGATGGACTTC 59.531 52.381 0.00 0.00 0.00 3.01
2503 2565 2.427506 GTGCTTTTCCGATGGACTTCT 58.572 47.619 0.00 0.00 0.00 2.85
2504 2566 3.596214 GTGCTTTTCCGATGGACTTCTA 58.404 45.455 0.00 0.00 0.00 2.10
2505 2567 4.192317 GTGCTTTTCCGATGGACTTCTAT 58.808 43.478 0.00 0.00 0.00 1.98
2506 2568 5.357257 GTGCTTTTCCGATGGACTTCTATA 58.643 41.667 0.00 0.00 0.00 1.31
2507 2569 5.815740 GTGCTTTTCCGATGGACTTCTATAA 59.184 40.000 0.00 0.00 0.00 0.98
2508 2570 6.483640 GTGCTTTTCCGATGGACTTCTATAAT 59.516 38.462 0.00 0.00 0.00 1.28
2509 2571 7.656137 GTGCTTTTCCGATGGACTTCTATAATA 59.344 37.037 0.00 0.00 0.00 0.98
2510 2572 7.872993 TGCTTTTCCGATGGACTTCTATAATAG 59.127 37.037 0.00 0.00 0.00 1.73
2511 2573 8.088981 GCTTTTCCGATGGACTTCTATAATAGA 58.911 37.037 0.00 0.00 0.00 1.98
2514 2576 9.535170 TTTCCGATGGACTTCTATAATAGATCT 57.465 33.333 0.00 0.00 34.22 2.75
2515 2577 8.740123 TCCGATGGACTTCTATAATAGATCTC 57.260 38.462 0.00 0.00 34.22 2.75
2516 2578 8.329502 TCCGATGGACTTCTATAATAGATCTCA 58.670 37.037 0.00 0.00 34.22 3.27
2517 2579 8.961634 CCGATGGACTTCTATAATAGATCTCAA 58.038 37.037 0.00 0.00 34.22 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.122204 ACACAACCCATTCTAACCTAAATAAGC 59.878 37.037 0.00 0.00 0.00 3.09
1 2 8.575649 ACACAACCCATTCTAACCTAAATAAG 57.424 34.615 0.00 0.00 0.00 1.73
2 3 8.943594 AACACAACCCATTCTAACCTAAATAA 57.056 30.769 0.00 0.00 0.00 1.40
3 4 9.675464 CTAACACAACCCATTCTAACCTAAATA 57.325 33.333 0.00 0.00 0.00 1.40
4 5 8.387813 TCTAACACAACCCATTCTAACCTAAAT 58.612 33.333 0.00 0.00 0.00 1.40
5 6 7.747690 TCTAACACAACCCATTCTAACCTAAA 58.252 34.615 0.00 0.00 0.00 1.85
6 7 7.016858 ACTCTAACACAACCCATTCTAACCTAA 59.983 37.037 0.00 0.00 0.00 2.69
7 8 6.499350 ACTCTAACACAACCCATTCTAACCTA 59.501 38.462 0.00 0.00 0.00 3.08
8 9 5.309806 ACTCTAACACAACCCATTCTAACCT 59.690 40.000 0.00 0.00 0.00 3.50
9 10 5.557866 ACTCTAACACAACCCATTCTAACC 58.442 41.667 0.00 0.00 0.00 2.85
10 11 7.494952 GGATACTCTAACACAACCCATTCTAAC 59.505 40.741 0.00 0.00 0.00 2.34
11 12 7.181305 TGGATACTCTAACACAACCCATTCTAA 59.819 37.037 0.00 0.00 37.61 2.10
12 13 6.670464 TGGATACTCTAACACAACCCATTCTA 59.330 38.462 0.00 0.00 37.61 2.10
13 14 5.487488 TGGATACTCTAACACAACCCATTCT 59.513 40.000 0.00 0.00 37.61 2.40
14 15 5.741011 TGGATACTCTAACACAACCCATTC 58.259 41.667 0.00 0.00 37.61 2.67
15 16 5.772393 TGGATACTCTAACACAACCCATT 57.228 39.130 0.00 0.00 37.61 3.16
16 17 5.772393 TTGGATACTCTAACACAACCCAT 57.228 39.130 0.00 0.00 37.61 4.00
17 18 5.163184 TGTTTGGATACTCTAACACAACCCA 60.163 40.000 0.00 0.00 31.46 4.51
18 19 5.310451 TGTTTGGATACTCTAACACAACCC 58.690 41.667 0.00 0.00 31.46 4.11
19 20 5.411669 CCTGTTTGGATACTCTAACACAACC 59.588 44.000 0.00 0.00 38.35 3.77
20 21 5.411669 CCCTGTTTGGATACTCTAACACAAC 59.588 44.000 0.00 0.00 38.35 3.32
21 22 5.556915 CCCTGTTTGGATACTCTAACACAA 58.443 41.667 0.00 0.00 38.35 3.33
22 23 4.564821 GCCCTGTTTGGATACTCTAACACA 60.565 45.833 0.00 0.00 38.35 3.72
23 24 3.939592 GCCCTGTTTGGATACTCTAACAC 59.060 47.826 0.00 0.00 38.35 3.32
24 25 3.054655 GGCCCTGTTTGGATACTCTAACA 60.055 47.826 0.00 0.00 38.35 2.41
25 26 3.054655 TGGCCCTGTTTGGATACTCTAAC 60.055 47.826 0.00 0.00 38.35 2.34
26 27 3.054655 GTGGCCCTGTTTGGATACTCTAA 60.055 47.826 0.00 0.00 38.35 2.10
27 28 2.504175 GTGGCCCTGTTTGGATACTCTA 59.496 50.000 0.00 0.00 38.35 2.43
28 29 1.282157 GTGGCCCTGTTTGGATACTCT 59.718 52.381 0.00 0.00 38.35 3.24
29 30 1.282157 AGTGGCCCTGTTTGGATACTC 59.718 52.381 0.00 0.00 38.35 2.59
30 31 1.372501 AGTGGCCCTGTTTGGATACT 58.627 50.000 0.00 0.00 38.35 2.12
31 32 3.477530 GATAGTGGCCCTGTTTGGATAC 58.522 50.000 0.00 0.00 38.35 2.24
32 33 2.104111 CGATAGTGGCCCTGTTTGGATA 59.896 50.000 0.00 0.00 38.35 2.59
33 34 1.134098 CGATAGTGGCCCTGTTTGGAT 60.134 52.381 0.00 0.00 38.35 3.41
34 35 0.251916 CGATAGTGGCCCTGTTTGGA 59.748 55.000 0.00 0.00 38.35 3.53
35 36 0.251916 TCGATAGTGGCCCTGTTTGG 59.748 55.000 0.00 0.00 37.40 3.28
36 37 1.737793 GTTCGATAGTGGCCCTGTTTG 59.262 52.381 0.00 0.00 37.40 2.93
37 38 1.628846 AGTTCGATAGTGGCCCTGTTT 59.371 47.619 0.00 0.00 37.40 2.83
38 39 1.276622 AGTTCGATAGTGGCCCTGTT 58.723 50.000 0.00 0.00 37.40 3.16
39 40 2.154567 TAGTTCGATAGTGGCCCTGT 57.845 50.000 0.00 0.00 37.40 4.00
40 41 3.305398 GATAGTTCGATAGTGGCCCTG 57.695 52.381 0.00 0.00 37.40 4.45
82 83 1.226295 GTACGGCCTTGCGCAATTC 60.226 57.895 25.26 17.40 40.31 2.17
92 93 1.551883 ACGAAAATAGTGGTACGGCCT 59.448 47.619 0.00 0.00 38.35 5.19
104 105 3.368323 GGGACCGGACTTGTACGAAAATA 60.368 47.826 9.46 0.00 0.00 1.40
105 106 2.613725 GGGACCGGACTTGTACGAAAAT 60.614 50.000 9.46 0.00 0.00 1.82
107 108 0.318120 GGGACCGGACTTGTACGAAA 59.682 55.000 9.46 0.00 0.00 3.46
110 111 2.180017 CGGGACCGGACTTGTACG 59.820 66.667 9.46 0.00 35.56 3.67
126 132 1.448540 GATCCAGCTGGTCACACCG 60.449 63.158 31.58 4.22 42.58 4.94
138 144 1.595109 TATGCGCCGCTTGATCCAG 60.595 57.895 11.67 0.00 0.00 3.86
186 192 5.604650 AGGAGTAGTATATTTTCTGGCTGCT 59.395 40.000 0.00 0.00 0.00 4.24
195 201 5.532406 TCGTACGGCAGGAGTAGTATATTTT 59.468 40.000 16.52 0.00 0.00 1.82
204 210 1.750399 GGGTCGTACGGCAGGAGTA 60.750 63.158 22.92 0.00 0.00 2.59
220 226 3.638592 GATTGGGTCGTGGTGGGGG 62.639 68.421 0.00 0.00 0.00 5.40
235 241 1.001268 AGCGTGCATAGTCGATCGATT 60.001 47.619 22.50 19.85 0.00 3.34
245 251 1.200483 CCGTTAGTCAGCGTGCATAG 58.800 55.000 0.00 0.00 0.00 2.23
260 266 0.675522 CCGTTTGGTCATAGCCCGTT 60.676 55.000 0.00 0.00 0.00 4.44
276 282 4.760047 GGCATGACGTCAGCCCGT 62.760 66.667 31.94 13.75 45.18 5.28
283 289 3.838795 GTCACGCGGCATGACGTC 61.839 66.667 24.28 13.96 41.32 4.34
311 317 3.772025 AGAGAAACCATCACGAGGAAGAT 59.228 43.478 0.00 0.00 0.00 2.40
324 330 7.873719 TTTGACAGAATAAACAGAGAAACCA 57.126 32.000 0.00 0.00 0.00 3.67
328 334 9.119418 TGTTGATTTGACAGAATAAACAGAGAA 57.881 29.630 8.21 0.00 36.10 2.87
333 339 8.134895 GGACTTGTTGATTTGACAGAATAAACA 58.865 33.333 8.21 8.21 38.17 2.83
334 340 7.595130 GGGACTTGTTGATTTGACAGAATAAAC 59.405 37.037 0.00 0.00 32.97 2.01
338 344 5.388654 AGGGACTTGTTGATTTGACAGAAT 58.611 37.500 0.00 0.00 27.25 2.40
340 346 4.437682 AGGGACTTGTTGATTTGACAGA 57.562 40.909 0.00 0.00 27.25 3.41
341 347 6.176183 AGATAGGGACTTGTTGATTTGACAG 58.824 40.000 0.00 0.00 41.75 3.51
342 348 6.126863 AGATAGGGACTTGTTGATTTGACA 57.873 37.500 0.00 0.00 41.75 3.58
343 349 7.308435 CAAAGATAGGGACTTGTTGATTTGAC 58.692 38.462 0.00 0.00 41.75 3.18
344 350 6.434028 CCAAAGATAGGGACTTGTTGATTTGA 59.566 38.462 0.00 0.00 41.75 2.69
345 351 6.434028 TCCAAAGATAGGGACTTGTTGATTTG 59.566 38.462 0.00 0.00 41.75 2.32
346 352 6.552008 TCCAAAGATAGGGACTTGTTGATTT 58.448 36.000 0.00 0.00 41.75 2.17
347 353 6.012508 TCTCCAAAGATAGGGACTTGTTGATT 60.013 38.462 0.00 0.00 41.75 2.57
348 354 5.488919 TCTCCAAAGATAGGGACTTGTTGAT 59.511 40.000 0.00 0.00 41.75 2.57
349 355 4.844085 TCTCCAAAGATAGGGACTTGTTGA 59.156 41.667 0.00 0.00 41.75 3.18
350 356 5.165961 TCTCCAAAGATAGGGACTTGTTG 57.834 43.478 0.00 0.00 41.75 3.33
351 357 4.323868 GCTCTCCAAAGATAGGGACTTGTT 60.324 45.833 0.00 0.00 41.75 2.83
352 358 3.198853 GCTCTCCAAAGATAGGGACTTGT 59.801 47.826 0.00 0.00 41.75 3.16
353 359 3.198635 TGCTCTCCAAAGATAGGGACTTG 59.801 47.826 0.00 0.00 41.75 3.16
354 360 3.198853 GTGCTCTCCAAAGATAGGGACTT 59.801 47.826 0.00 0.00 41.75 3.01
355 361 2.769095 GTGCTCTCCAAAGATAGGGACT 59.231 50.000 0.00 0.00 46.37 3.85
356 362 2.482142 CGTGCTCTCCAAAGATAGGGAC 60.482 54.545 0.00 0.00 0.00 4.46
357 363 1.757118 CGTGCTCTCCAAAGATAGGGA 59.243 52.381 0.00 0.00 0.00 4.20
358 364 1.757118 TCGTGCTCTCCAAAGATAGGG 59.243 52.381 0.00 0.00 0.00 3.53
359 365 2.223923 CCTCGTGCTCTCCAAAGATAGG 60.224 54.545 0.00 0.00 0.00 2.57
360 366 2.428890 ACCTCGTGCTCTCCAAAGATAG 59.571 50.000 0.00 0.00 0.00 2.08
361 367 2.166459 CACCTCGTGCTCTCCAAAGATA 59.834 50.000 0.00 0.00 0.00 1.98
362 368 1.066573 CACCTCGTGCTCTCCAAAGAT 60.067 52.381 0.00 0.00 0.00 2.40
363 369 0.318441 CACCTCGTGCTCTCCAAAGA 59.682 55.000 0.00 0.00 0.00 2.52
364 370 2.832931 CACCTCGTGCTCTCCAAAG 58.167 57.895 0.00 0.00 0.00 2.77
401 407 2.654877 GCTCCGGTTCCGTCAGAA 59.345 61.111 0.00 0.00 0.00 3.02
427 433 2.629656 GGCGCTGGCTGTGACAAAT 61.630 57.895 7.64 0.00 39.81 2.32
515 525 2.239654 TCAAGGCAGGTTAGGGAGATTG 59.760 50.000 0.00 0.00 0.00 2.67
545 555 4.749099 CCCGCAAGAATCAGAAGAATAGAG 59.251 45.833 0.00 0.00 43.02 2.43
548 558 3.454447 TCCCCGCAAGAATCAGAAGAATA 59.546 43.478 0.00 0.00 43.02 1.75
561 571 2.303549 CTGGCTAGTCTCCCCGCAAG 62.304 65.000 0.00 0.00 0.00 4.01
654 664 3.496884 GTGTACAATTCAAAGTCCTCGCA 59.503 43.478 0.00 0.00 0.00 5.10
655 665 3.423123 CGTGTACAATTCAAAGTCCTCGC 60.423 47.826 0.00 0.00 0.00 5.03
657 667 4.062991 ACCGTGTACAATTCAAAGTCCTC 58.937 43.478 0.00 0.00 0.00 3.71
659 669 3.810941 TCACCGTGTACAATTCAAAGTCC 59.189 43.478 0.00 0.00 0.00 3.85
660 670 5.412526 TTCACCGTGTACAATTCAAAGTC 57.587 39.130 0.00 0.00 0.00 3.01
662 672 7.433719 TGAAAATTCACCGTGTACAATTCAAAG 59.566 33.333 0.00 0.00 31.01 2.77
664 674 6.796426 TGAAAATTCACCGTGTACAATTCAA 58.204 32.000 0.00 0.00 31.01 2.69
665 675 6.378710 TGAAAATTCACCGTGTACAATTCA 57.621 33.333 0.00 2.69 31.01 2.57
687 712 2.613133 GAGTACTAGTACGCAGGGAGTG 59.387 54.545 26.11 0.00 40.80 3.51
705 730 2.615912 GCGGGAATAGTACTGTACGAGT 59.384 50.000 11.97 6.53 38.88 4.18
706 731 2.615447 TGCGGGAATAGTACTGTACGAG 59.385 50.000 11.97 0.00 0.00 4.18
707 732 2.642427 TGCGGGAATAGTACTGTACGA 58.358 47.619 11.97 7.73 0.00 3.43
708 733 3.111098 GTTGCGGGAATAGTACTGTACG 58.889 50.000 11.97 6.31 0.00 3.67
709 734 4.114058 TGTTGCGGGAATAGTACTGTAC 57.886 45.455 9.93 9.93 0.00 2.90
710 735 4.021280 TGTTGTTGCGGGAATAGTACTGTA 60.021 41.667 5.39 0.00 0.00 2.74
711 736 3.244284 TGTTGTTGCGGGAATAGTACTGT 60.244 43.478 5.39 0.00 0.00 3.55
712 737 3.331150 TGTTGTTGCGGGAATAGTACTG 58.669 45.455 5.39 0.00 0.00 2.74
713 738 3.688694 TGTTGTTGCGGGAATAGTACT 57.311 42.857 0.00 0.00 0.00 2.73
714 739 3.499157 TGTTGTTGTTGCGGGAATAGTAC 59.501 43.478 0.00 0.00 0.00 2.73
715 740 3.741249 TGTTGTTGTTGCGGGAATAGTA 58.259 40.909 0.00 0.00 0.00 1.82
716 741 2.577700 TGTTGTTGTTGCGGGAATAGT 58.422 42.857 0.00 0.00 0.00 2.12
717 742 3.634568 TTGTTGTTGTTGCGGGAATAG 57.365 42.857 0.00 0.00 0.00 1.73
718 743 4.386867 TTTTGTTGTTGTTGCGGGAATA 57.613 36.364 0.00 0.00 0.00 1.75
719 744 2.969628 TTTGTTGTTGTTGCGGGAAT 57.030 40.000 0.00 0.00 0.00 3.01
720 745 2.743636 TTTTGTTGTTGTTGCGGGAA 57.256 40.000 0.00 0.00 0.00 3.97
721 746 2.743636 TTTTTGTTGTTGTTGCGGGA 57.256 40.000 0.00 0.00 0.00 5.14
857 885 3.118186 TGTGGTATTTTATAGGCCGTGCT 60.118 43.478 0.00 0.00 0.00 4.40
872 900 4.669318 CTCTCGAACAATACGTGTGGTAT 58.331 43.478 0.00 0.00 43.72 2.73
875 903 1.654105 GCTCTCGAACAATACGTGTGG 59.346 52.381 0.00 0.00 40.60 4.17
877 905 1.544691 AGGCTCTCGAACAATACGTGT 59.455 47.619 0.00 0.00 44.64 4.49
886 915 1.153997 GTCGGTGAGGCTCTCGAAC 60.154 63.158 25.87 18.65 32.35 3.95
932 964 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
937 969 4.125703 GCAAGAGAGAGAGAGAGAGAGAG 58.874 52.174 0.00 0.00 0.00 3.20
940 972 3.998913 TGCAAGAGAGAGAGAGAGAGA 57.001 47.619 0.00 0.00 0.00 3.10
950 992 1.371183 CGGTGGGTTGCAAGAGAGA 59.629 57.895 0.00 0.00 0.00 3.10
952 994 2.144078 TCCGGTGGGTTGCAAGAGA 61.144 57.895 0.00 0.00 33.83 3.10
954 996 2.112297 GTCCGGTGGGTTGCAAGA 59.888 61.111 0.00 0.00 33.83 3.02
956 998 3.810188 TGGTCCGGTGGGTTGCAA 61.810 61.111 0.00 0.00 33.83 4.08
1026 1070 1.553690 TAGCCACTGGTGAAGCCTCC 61.554 60.000 1.93 0.00 38.35 4.30
1044 1088 0.607217 TTGTGGACTCGCCGTCTCTA 60.607 55.000 4.98 0.00 42.44 2.43
1062 1106 3.319198 ACCTCCGGCATGGACGTT 61.319 61.111 13.58 0.00 43.74 3.99
1105 1149 2.946762 GCCAGCGACAACCAAGTC 59.053 61.111 0.00 0.00 35.19 3.01
1106 1150 2.972505 CGCCAGCGACAACCAAGT 60.973 61.111 6.06 0.00 42.83 3.16
1107 1151 3.726517 CCGCCAGCGACAACCAAG 61.727 66.667 14.67 0.00 42.83 3.61
1155 1199 2.680352 TCCACCTGCTCGTCCTCC 60.680 66.667 0.00 0.00 0.00 4.30
1519 1566 5.284660 CGTCGGTGTACACATTAGAAGTAAC 59.715 44.000 26.51 4.55 0.00 2.50
1692 1752 3.889196 TCGGCATAATTATTTGTCGGC 57.111 42.857 11.88 4.41 41.10 5.54
1753 1813 8.537728 TTGCCCTTCTATGAATCATATGTTTT 57.462 30.769 3.12 0.00 0.00 2.43
1769 1829 4.773674 TCATGTCATTCATTTTGCCCTTCT 59.226 37.500 0.00 0.00 34.09 2.85
1770 1830 5.075858 TCATGTCATTCATTTTGCCCTTC 57.924 39.130 0.00 0.00 34.09 3.46
1836 1896 5.109903 CCGGAGAGAAAGTCACGAATAAAT 58.890 41.667 0.00 0.00 31.54 1.40
1862 1922 2.194201 TTCCCGATGGTCTGGAAAAC 57.806 50.000 1.06 0.00 36.93 2.43
1891 1953 4.015872 TGTACCATTCGAGCCTTTTCTT 57.984 40.909 0.00 0.00 0.00 2.52
1892 1954 3.695830 TGTACCATTCGAGCCTTTTCT 57.304 42.857 0.00 0.00 0.00 2.52
1893 1955 4.965119 ATTGTACCATTCGAGCCTTTTC 57.035 40.909 0.00 0.00 0.00 2.29
1912 1974 0.252742 AGAGGGGTGACGGAGGAATT 60.253 55.000 0.00 0.00 0.00 2.17
1932 1994 0.465705 CTAGCAGCCGATGGGAAGAA 59.534 55.000 0.00 0.00 34.06 2.52
1940 2002 2.171448 AGAATTTGTCCTAGCAGCCGAT 59.829 45.455 0.00 0.00 0.00 4.18
1978 2040 0.598562 GAAGCGATCTATGGGCTCGA 59.401 55.000 6.23 0.00 35.64 4.04
2018 2080 3.036429 GCGCTGTGATTCCCCTCCT 62.036 63.158 0.00 0.00 0.00 3.69
2024 2086 0.674895 AGTGAAGGCGCTGTGATTCC 60.675 55.000 7.64 0.00 32.61 3.01
2027 2089 1.078848 GGAGTGAAGGCGCTGTGAT 60.079 57.895 7.64 0.00 34.37 3.06
2034 2096 1.066303 CTACTAGCTGGAGTGAAGGCG 59.934 57.143 3.17 0.00 0.00 5.52
2067 2129 3.334691 CACACCTGCGAGGATTAGAAAA 58.665 45.455 8.91 0.00 37.67 2.29
2080 2142 2.270986 CCCAAAGCTCCACACCTGC 61.271 63.158 0.00 0.00 0.00 4.85
2090 2152 2.019897 GCCGCAATATGCCCAAAGCT 62.020 55.000 0.00 0.00 41.12 3.74
2101 2163 4.941263 ACTCAAAGAATAAGTGCCGCAATA 59.059 37.500 0.00 0.00 0.00 1.90
2104 2166 2.778299 ACTCAAAGAATAAGTGCCGCA 58.222 42.857 0.00 0.00 0.00 5.69
2139 2201 5.485353 AGATGGACAAACTCAAGTAGGATCA 59.515 40.000 0.00 0.00 0.00 2.92
2149 2211 6.210584 TGACTATGTACAGATGGACAAACTCA 59.789 38.462 1.21 0.65 0.00 3.41
2158 2220 4.502259 GCTCCCTTGACTATGTACAGATGG 60.502 50.000 0.33 0.00 0.00 3.51
2164 2226 3.004524 CGTAGGCTCCCTTGACTATGTAC 59.995 52.174 0.00 0.00 34.61 2.90
2165 2227 3.220110 CGTAGGCTCCCTTGACTATGTA 58.780 50.000 0.00 0.00 34.61 2.29
2201 2263 1.079819 CACACCGCCTCAACGAGAT 60.080 57.895 0.00 0.00 34.06 2.75
2206 2268 0.953960 CCTAACCACACCGCCTCAAC 60.954 60.000 0.00 0.00 0.00 3.18
2238 2300 2.741517 CAACATCTTGTGGTCGTGCATA 59.258 45.455 0.00 0.00 0.00 3.14
2251 2313 1.967319 AGCAACCGACACAACATCTT 58.033 45.000 0.00 0.00 0.00 2.40
2264 2326 4.133078 CCTTGGATAGATCTGAAGCAACC 58.867 47.826 5.18 0.00 0.00 3.77
2281 2343 1.554042 CGTCGTCGTTGAACCCTTGG 61.554 60.000 0.00 0.00 0.00 3.61
2288 2350 3.033764 GCAGCCGTCGTCGTTGAA 61.034 61.111 0.71 0.00 35.01 2.69
2301 2363 1.900498 AGCACCTTGGAGTTGCAGC 60.900 57.895 0.44 0.00 0.00 5.25
2307 2369 3.971702 GGGCCAGCACCTTGGAGT 61.972 66.667 4.39 0.00 40.87 3.85
2313 2375 3.017581 CCCTAAGGGCCAGCACCT 61.018 66.667 6.18 0.00 40.96 4.00
2323 2385 2.267961 GTCCACGTGCCCCTAAGG 59.732 66.667 10.91 0.00 39.47 2.69
2324 2386 2.125673 CGTCCACGTGCCCCTAAG 60.126 66.667 10.91 0.00 34.11 2.18
2325 2387 1.756408 TTTCGTCCACGTGCCCCTAA 61.756 55.000 10.91 0.00 40.80 2.69
2326 2388 1.756408 TTTTCGTCCACGTGCCCCTA 61.756 55.000 10.91 0.00 40.80 3.53
2327 2389 3.109592 TTTTCGTCCACGTGCCCCT 62.110 57.895 10.91 0.00 40.80 4.79
2328 2390 2.592287 TTTTCGTCCACGTGCCCC 60.592 61.111 10.91 0.00 40.80 5.80
2329 2391 1.441732 AAGTTTTCGTCCACGTGCCC 61.442 55.000 10.91 0.88 40.80 5.36
2330 2392 0.379316 AAAGTTTTCGTCCACGTGCC 59.621 50.000 10.91 1.29 40.80 5.01
2331 2393 1.596220 GGAAAGTTTTCGTCCACGTGC 60.596 52.381 10.91 0.00 40.80 5.34
2332 2394 1.332552 CGGAAAGTTTTCGTCCACGTG 60.333 52.381 9.08 9.08 40.80 4.49
2333 2395 0.932399 CGGAAAGTTTTCGTCCACGT 59.068 50.000 8.20 0.00 40.80 4.49
2334 2396 1.071041 GTCGGAAAGTTTTCGTCCACG 60.071 52.381 15.73 0.00 38.06 4.94
2335 2397 2.033151 CAGTCGGAAAGTTTTCGTCCAC 60.033 50.000 15.73 7.28 38.06 4.02
2336 2398 2.206750 CAGTCGGAAAGTTTTCGTCCA 58.793 47.619 15.73 0.00 38.06 4.02
2337 2399 2.207590 ACAGTCGGAAAGTTTTCGTCC 58.792 47.619 15.73 8.15 38.06 4.79
2338 2400 2.861935 TGACAGTCGGAAAGTTTTCGTC 59.138 45.455 15.73 10.55 38.06 4.20
2339 2401 2.896168 TGACAGTCGGAAAGTTTTCGT 58.104 42.857 15.73 0.00 38.06 3.85
2340 2402 3.120649 GGATGACAGTCGGAAAGTTTTCG 60.121 47.826 10.18 10.18 38.06 3.46
2341 2403 3.813166 TGGATGACAGTCGGAAAGTTTTC 59.187 43.478 0.00 0.00 36.46 2.29
2342 2404 3.815809 TGGATGACAGTCGGAAAGTTTT 58.184 40.909 0.00 0.00 0.00 2.43
2343 2405 3.485463 TGGATGACAGTCGGAAAGTTT 57.515 42.857 0.00 0.00 0.00 2.66
2344 2406 3.703001 ATGGATGACAGTCGGAAAGTT 57.297 42.857 0.00 0.00 0.00 2.66
2345 2407 4.383118 CCTTATGGATGACAGTCGGAAAGT 60.383 45.833 0.00 0.00 34.57 2.66
2346 2408 4.122776 CCTTATGGATGACAGTCGGAAAG 58.877 47.826 0.00 0.00 34.57 2.62
2347 2409 3.517901 ACCTTATGGATGACAGTCGGAAA 59.482 43.478 0.81 0.00 37.04 3.13
2348 2410 3.104512 ACCTTATGGATGACAGTCGGAA 58.895 45.455 0.81 0.00 37.04 4.30
2349 2411 2.693591 GACCTTATGGATGACAGTCGGA 59.306 50.000 0.81 0.00 37.04 4.55
2350 2412 2.430694 TGACCTTATGGATGACAGTCGG 59.569 50.000 0.81 0.00 37.04 4.79
2351 2413 3.801114 TGACCTTATGGATGACAGTCG 57.199 47.619 0.81 0.00 37.04 4.18
2352 2414 5.091261 ACTTGACCTTATGGATGACAGTC 57.909 43.478 0.81 0.00 37.04 3.51
2353 2415 5.013079 TCAACTTGACCTTATGGATGACAGT 59.987 40.000 0.81 0.00 37.04 3.55
2354 2416 5.352569 GTCAACTTGACCTTATGGATGACAG 59.647 44.000 10.42 0.00 41.37 3.51
2355 2417 5.245531 GTCAACTTGACCTTATGGATGACA 58.754 41.667 10.42 0.00 41.37 3.58
2356 2418 5.803020 GTCAACTTGACCTTATGGATGAC 57.197 43.478 10.42 0.00 41.37 3.06
2369 2431 4.669866 TCCCCTACTAGAGTCAACTTGA 57.330 45.455 0.00 0.00 0.00 3.02
2370 2432 4.380655 CGTTCCCCTACTAGAGTCAACTTG 60.381 50.000 0.00 0.00 0.00 3.16
2371 2433 3.762823 CGTTCCCCTACTAGAGTCAACTT 59.237 47.826 0.00 0.00 0.00 2.66
2372 2434 3.009916 TCGTTCCCCTACTAGAGTCAACT 59.990 47.826 0.00 0.00 0.00 3.16
2373 2435 3.128415 GTCGTTCCCCTACTAGAGTCAAC 59.872 52.174 0.00 0.00 0.00 3.18
2374 2436 3.350833 GTCGTTCCCCTACTAGAGTCAA 58.649 50.000 0.00 0.00 0.00 3.18
2375 2437 2.679059 CGTCGTTCCCCTACTAGAGTCA 60.679 54.545 0.00 0.00 0.00 3.41
2376 2438 1.939255 CGTCGTTCCCCTACTAGAGTC 59.061 57.143 0.00 0.00 0.00 3.36
2377 2439 1.556911 TCGTCGTTCCCCTACTAGAGT 59.443 52.381 0.00 0.00 0.00 3.24
2378 2440 1.939255 GTCGTCGTTCCCCTACTAGAG 59.061 57.143 0.00 0.00 0.00 2.43
2379 2441 1.278985 TGTCGTCGTTCCCCTACTAGA 59.721 52.381 0.00 0.00 0.00 2.43
2380 2442 1.742761 TGTCGTCGTTCCCCTACTAG 58.257 55.000 0.00 0.00 0.00 2.57
2381 2443 1.812571 GTTGTCGTCGTTCCCCTACTA 59.187 52.381 0.00 0.00 0.00 1.82
2382 2444 0.600057 GTTGTCGTCGTTCCCCTACT 59.400 55.000 0.00 0.00 0.00 2.57
2383 2445 0.730494 CGTTGTCGTCGTTCCCCTAC 60.730 60.000 0.00 0.00 0.00 3.18
2384 2446 1.580942 CGTTGTCGTCGTTCCCCTA 59.419 57.895 0.00 0.00 0.00 3.53
2385 2447 2.337532 CGTTGTCGTCGTTCCCCT 59.662 61.111 0.00 0.00 0.00 4.79
2386 2448 2.735857 CCGTTGTCGTCGTTCCCC 60.736 66.667 0.00 0.00 35.01 4.81
2387 2449 3.408851 GCCGTTGTCGTCGTTCCC 61.409 66.667 0.00 0.00 35.01 3.97
2388 2450 2.659244 TGCCGTTGTCGTCGTTCC 60.659 61.111 0.00 0.00 35.01 3.62
2389 2451 2.542896 GTGCCGTTGTCGTCGTTC 59.457 61.111 0.00 0.00 35.01 3.95
2390 2452 3.324671 CGTGCCGTTGTCGTCGTT 61.325 61.111 0.00 0.00 35.01 3.85
2391 2453 4.557605 ACGTGCCGTTGTCGTCGT 62.558 61.111 0.00 0.00 36.35 4.34
2392 2454 3.749373 GACGTGCCGTTGTCGTCG 61.749 66.667 0.00 0.00 41.37 5.12
2394 2456 2.657296 CTGACGTGCCGTTGTCGT 60.657 61.111 0.00 0.00 41.37 4.34
2395 2457 4.059459 GCTGACGTGCCGTTGTCG 62.059 66.667 0.00 0.00 41.37 4.35
2396 2458 4.059459 CGCTGACGTGCCGTTGTC 62.059 66.667 0.00 0.00 41.37 3.18
2403 2465 3.016474 GAAGAAGCCGCTGACGTGC 62.016 63.158 0.00 0.00 37.70 5.34
2404 2466 1.347817 GAGAAGAAGCCGCTGACGTG 61.348 60.000 0.00 0.00 37.70 4.49
2405 2467 1.080434 GAGAAGAAGCCGCTGACGT 60.080 57.895 0.00 0.00 37.70 4.34
2406 2468 2.155194 CGAGAAGAAGCCGCTGACG 61.155 63.158 0.00 0.00 39.67 4.35
2407 2469 1.080434 ACGAGAAGAAGCCGCTGAC 60.080 57.895 0.00 0.00 0.00 3.51
2408 2470 1.080501 CACGAGAAGAAGCCGCTGA 60.081 57.895 0.00 0.00 0.00 4.26
2409 2471 2.097038 CCACGAGAAGAAGCCGCTG 61.097 63.158 0.00 0.00 0.00 5.18
2410 2472 2.262915 CCACGAGAAGAAGCCGCT 59.737 61.111 0.00 0.00 0.00 5.52
2411 2473 3.491652 GCCACGAGAAGAAGCCGC 61.492 66.667 0.00 0.00 0.00 6.53
2412 2474 3.181967 CGCCACGAGAAGAAGCCG 61.182 66.667 0.00 0.00 0.00 5.52
2413 2475 2.815647 CCGCCACGAGAAGAAGCC 60.816 66.667 0.00 0.00 0.00 4.35
2414 2476 2.048127 ACCGCCACGAGAAGAAGC 60.048 61.111 0.00 0.00 0.00 3.86
2415 2477 1.738099 CCACCGCCACGAGAAGAAG 60.738 63.158 0.00 0.00 0.00 2.85
2416 2478 2.342279 CCACCGCCACGAGAAGAA 59.658 61.111 0.00 0.00 0.00 2.52
2417 2479 2.915659 ACCACCGCCACGAGAAGA 60.916 61.111 0.00 0.00 0.00 2.87
2418 2480 2.738521 CACCACCGCCACGAGAAG 60.739 66.667 0.00 0.00 0.00 2.85
2419 2481 4.308458 CCACCACCGCCACGAGAA 62.308 66.667 0.00 0.00 0.00 2.87
2423 2485 4.619227 AAGACCACCACCGCCACG 62.619 66.667 0.00 0.00 0.00 4.94
2424 2486 2.668550 GAAGACCACCACCGCCAC 60.669 66.667 0.00 0.00 0.00 5.01
2425 2487 2.063015 ATTGAAGACCACCACCGCCA 62.063 55.000 0.00 0.00 0.00 5.69
2426 2488 1.303317 ATTGAAGACCACCACCGCC 60.303 57.895 0.00 0.00 0.00 6.13
2427 2489 1.586154 CCATTGAAGACCACCACCGC 61.586 60.000 0.00 0.00 0.00 5.68
2428 2490 0.250727 ACCATTGAAGACCACCACCG 60.251 55.000 0.00 0.00 0.00 4.94
2429 2491 1.073923 AGACCATTGAAGACCACCACC 59.926 52.381 0.00 0.00 0.00 4.61
2430 2492 2.568623 AGACCATTGAAGACCACCAC 57.431 50.000 0.00 0.00 0.00 4.16
2431 2493 3.515502 CTCTAGACCATTGAAGACCACCA 59.484 47.826 0.00 0.00 0.00 4.17
2432 2494 3.769844 TCTCTAGACCATTGAAGACCACC 59.230 47.826 0.00 0.00 0.00 4.61
2433 2495 4.749976 GTCTCTAGACCATTGAAGACCAC 58.250 47.826 0.00 0.00 39.07 4.16
2446 2508 6.797454 ACAAATAACATCGAGGTCTCTAGAC 58.203 40.000 1.92 1.30 44.04 2.59
2447 2509 8.693120 ATACAAATAACATCGAGGTCTCTAGA 57.307 34.615 1.92 0.00 0.00 2.43
2450 2512 9.698309 CATAATACAAATAACATCGAGGTCTCT 57.302 33.333 1.92 0.00 0.00 3.10
2451 2513 8.436200 GCATAATACAAATAACATCGAGGTCTC 58.564 37.037 1.92 0.00 0.00 3.36
2452 2514 8.150945 AGCATAATACAAATAACATCGAGGTCT 58.849 33.333 1.92 0.00 0.00 3.85
2453 2515 8.311650 AGCATAATACAAATAACATCGAGGTC 57.688 34.615 1.92 0.00 0.00 3.85
2454 2516 8.559536 CAAGCATAATACAAATAACATCGAGGT 58.440 33.333 0.00 0.00 0.00 3.85
2455 2517 8.559536 ACAAGCATAATACAAATAACATCGAGG 58.440 33.333 0.00 0.00 0.00 4.63
2456 2518 9.373750 CACAAGCATAATACAAATAACATCGAG 57.626 33.333 0.00 0.00 0.00 4.04
2457 2519 8.341903 CCACAAGCATAATACAAATAACATCGA 58.658 33.333 0.00 0.00 0.00 3.59
2458 2520 8.128582 ACCACAAGCATAATACAAATAACATCG 58.871 33.333 0.00 0.00 0.00 3.84
2459 2521 9.236691 CACCACAAGCATAATACAAATAACATC 57.763 33.333 0.00 0.00 0.00 3.06
2460 2522 7.706179 GCACCACAAGCATAATACAAATAACAT 59.294 33.333 0.00 0.00 0.00 2.71
2461 2523 7.032580 GCACCACAAGCATAATACAAATAACA 58.967 34.615 0.00 0.00 0.00 2.41
2462 2524 7.257722 AGCACCACAAGCATAATACAAATAAC 58.742 34.615 0.00 0.00 0.00 1.89
2463 2525 7.403312 AGCACCACAAGCATAATACAAATAA 57.597 32.000 0.00 0.00 0.00 1.40
2464 2526 7.403312 AAGCACCACAAGCATAATACAAATA 57.597 32.000 0.00 0.00 0.00 1.40
2465 2527 5.920193 AGCACCACAAGCATAATACAAAT 57.080 34.783 0.00 0.00 0.00 2.32
2466 2528 5.720371 AAGCACCACAAGCATAATACAAA 57.280 34.783 0.00 0.00 0.00 2.83
2467 2529 5.720371 AAAGCACCACAAGCATAATACAA 57.280 34.783 0.00 0.00 0.00 2.41
2468 2530 5.336372 GGAAAAGCACCACAAGCATAATACA 60.336 40.000 0.00 0.00 0.00 2.29
2469 2531 5.102313 GGAAAAGCACCACAAGCATAATAC 58.898 41.667 0.00 0.00 0.00 1.89
2470 2532 4.142491 CGGAAAAGCACCACAAGCATAATA 60.142 41.667 0.00 0.00 0.00 0.98
2471 2533 3.367292 CGGAAAAGCACCACAAGCATAAT 60.367 43.478 0.00 0.00 0.00 1.28
2472 2534 2.030363 CGGAAAAGCACCACAAGCATAA 60.030 45.455 0.00 0.00 0.00 1.90
2473 2535 1.539388 CGGAAAAGCACCACAAGCATA 59.461 47.619 0.00 0.00 0.00 3.14
2474 2536 0.314935 CGGAAAAGCACCACAAGCAT 59.685 50.000 0.00 0.00 0.00 3.79
2475 2537 0.749818 TCGGAAAAGCACCACAAGCA 60.750 50.000 0.00 0.00 0.00 3.91
2476 2538 0.598065 ATCGGAAAAGCACCACAAGC 59.402 50.000 0.00 0.00 0.00 4.01
2477 2539 1.068333 CCATCGGAAAAGCACCACAAG 60.068 52.381 0.00 0.00 0.00 3.16
2478 2540 0.958091 CCATCGGAAAAGCACCACAA 59.042 50.000 0.00 0.00 0.00 3.33
2479 2541 0.109532 TCCATCGGAAAAGCACCACA 59.890 50.000 0.00 0.00 0.00 4.17
2480 2542 0.521735 GTCCATCGGAAAAGCACCAC 59.478 55.000 0.00 0.00 31.38 4.16
2481 2543 0.400213 AGTCCATCGGAAAAGCACCA 59.600 50.000 0.00 0.00 31.38 4.17
2482 2544 1.468914 GAAGTCCATCGGAAAAGCACC 59.531 52.381 0.00 0.00 31.38 5.01
2483 2545 2.427506 AGAAGTCCATCGGAAAAGCAC 58.572 47.619 0.00 0.00 31.38 4.40
2484 2546 2.859165 AGAAGTCCATCGGAAAAGCA 57.141 45.000 0.00 0.00 31.38 3.91
2485 2547 8.088981 TCTATTATAGAAGTCCATCGGAAAAGC 58.911 37.037 0.00 0.00 31.38 3.51
2488 2550 9.535170 AGATCTATTATAGAAGTCCATCGGAAA 57.465 33.333 6.00 0.00 38.50 3.13
2489 2551 9.179909 GAGATCTATTATAGAAGTCCATCGGAA 57.820 37.037 6.00 0.00 38.50 4.30
2490 2552 8.329502 TGAGATCTATTATAGAAGTCCATCGGA 58.670 37.037 6.00 0.00 38.50 4.55
2491 2553 8.512966 TGAGATCTATTATAGAAGTCCATCGG 57.487 38.462 6.00 0.00 38.50 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.