>input_sequence_76085
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---ATGGATGCCACCGCGGCGGACAGGCAGGAGGCTTCACCAGTGGCTAGAGACGGCGAGTCCACAACGTCCATGCCGGA
GGTGCCGCGAGCGCCATTGTCCGACTCCGACTTGGTTGTCGCTGGCGGCAGCGGCACGCCCGAGGAGAGCGGCGGCGGGG
AGGACGAGCAGGTGGAGAGGTTCTACGCGCTGCTCGCCAACATCCGGGCACTGAGGGACGTGTACGGCGCCGGCGGGTCG
TCGAGGAAGCGGGCCAGGGGGGCGGAGGCGCCGTTGTGGAAGCCAAAGTTCAGGATGGAGGACTTCCGGGAGGCGGACGA
CGCGGTGCCCGCGAAGAAGGGGAGGAGCGATCGCGACGAGCGGCAGCGGCTGGAGAACAGCGACGCGGCGGAGGCCGACG
GGGAGGACGGCGAGGTCGTGGAAGAGAATGATCGGGTCTCCGCGTCGCAGACCACGTGTGTGCTGACTGCCGAGCAGCCA
G---AGCTAGCCAGTATTCTGAATCCAACAAATTGTCTGGACGATGTT-ACTTCTAATGTGT-------ACACCGACGCA
GTCGTTTAA-----------------------------------------------------------------------
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>chr1A_1_TraesCS1A01G232500
GCTTATTTAGGTTAGAATGGGTTGTGTTAGAGTATCCAAACAGGGCCACTATCGAACTATCGATGGTCCAAAATTCCACA
CGGAATTGCGCAAGGCCGTACCACTATTTTCGTACA-----AGTCCGGTCCCGGTGTGACCAGCTGGATCAAGCGGCGCA
TACCGCGCGTCGCTTCTGCCCACCGGCGCGAAGCAGCCAGAAAATATACTACTCCTGCCGTACGACCCCCACCACGACCC
AATCGATCGACTATGCACGCTGACTAACGGGCTATGACCAAACGGGCTGACGTCATGCCGCGTGACGTCTTCACCCATCT
TCCTCGTGATGGTTTCTCTGTTTATTCTGTCAAATCAACAAGTCCCTATCTTTGGAGAGCACGAGGTGCTCTTCCCTTTG
CCCTTTTTCTGACGGAACCGGAGCGAGAGCCCAT---TTGTCACAGCCAGCGCCGTCCGGTTTCTTTATGGAAGACCGGG
TCCGGGTCATGGTTTAAGCAA-GGCACACGATCGATCAAACCATCAATCTCCCTAACCTGCCTTGACTAGCCAGCTCTAT
TCTTCTGATTCTTGCGGGGAGACTAGCCAGGTTCATTCAGCGCCAGTGTCAACTCGAAATTGTATTTATTCTTTTTTGCT
GCGAGGACTTTGAATTGTATTTGTGCGAGGACTTTGAATTG---------------TACACGGTGAATTTTCACTCCCTG
CGTACTAGTACTCGTACAGTACTATTCCCGCAACAACAACAAAAAAAGTACTCGTACAGTACTAGTGGTATTCAATTATG
CTCACGGAGTGCCCAAAGTCTTCGGTGTTTTCATCGC---GAGCACGTCAATATGAACAGTCGACGCCAGCACTCACGGC
GGCCAGCACGGCCTATAAAATACCAC-ACGTATTGTTCGAGAGCCTCACCGACTCATCCTCTCT---TTGTCTTGTCTCC
CTCTCTCTCTCTC----------TCTCTCTCTCTCTCT--TGCAACCCACCGGACCACGACGATCGACCGGGCCCCAGAG
GCGATGGATGCCACCGCGGCGGACAGGCAGGAGGCTTCACCAGTGGCTAGAGACGGCGAGTCCACAACGTCCATGCCGGA
GGTGCCGCGAGCGCCATTGTCCGACTCCGACTTGGTTGTCGCTGGCGGCAGCGGCACGCCCGAGGAGAGCGGCGGCGGGG
AGGACGAGCAGGTGGAGAGGTTCTACGCGCTGCTCGCCAACATCCGGGCACTGAGGGACGTGTACGGCGCCGGCGGGTCG
TCGAGGAAGCGGGCCAGGGGGGCGGAGGCGCCGTTGTGGAAGCCAAAGTTCAGGATGGAGGACTTCCGGGAGGCGGACGA
CGCGGTGCCCGCGAAGAAGGGGAGGAGCGATCGCGACGAGCGGCAGCGGCTGGAGAACAGCGACGCGGCGGAGGCCGACG
GGGAGGACGGCGAGGTCGTGGAAGAGAATGATCGGGTCTCCGCGTCGCAGACCACGTGTGTGCTGACTGCCGAGCAGCCA
G---AGCTAGCCAGTATTCTGAATCCAACAAATTGTCTGGACGATGTT-ACTTCTAATGTGT-------ACACCGACGCA
GTCGTTTAATTAGATTTGCCATCTGCCATGTAGTATCTTTCCTTTTTGATATCCATTTACACGTACTGACATAGAAT--T
TTAAGTTCCCTAAAAATACATA---GTAGAATTTTAAGTAGTTTTGCTATATTTTCTTTGTTATATATGCGGCCGACAAA
TAATTATGCCGAATTCACTGCTAAGTGCTAACAAGCTACCAAACGACAAATCAAAACATATGATTCATAGAAGGGCAAAA
TGAATGACATGATCTGATCAGAAGGATATCAATATGTCTAAGAAATGTCTACTGTATTTATTCGTGACTTTCTCTCCGGG
CGTTTTCCAGACCATCGGGAAATGCATGA--AAAGAAAAGGCTCGAATGGTACAATTCCTCCGTCACCCCTCTTTCTTCC
CATCGGCTGCTAGGACAAATTCTCCCCAAGGTTTCGTCGTCGAGCCCATAGATCGCTTCCTCTTTGTGTGCTGGTGGCAA
GGAGGGGAATCACAGCGCCTTCACTCCAGCTAGTAGTTTAGGTTAGGGTTTTCTAATCCTCGCAGGTGTGGAGCTTTGGG
CATATTGCGGCACTTATTCTTTGAGTTTGTCTTCTGGATCTGATCCTACTTGAGTTTGTCCATCTGTACATAGTCAAGGG
AGCCTACGCATAGATTACTGCCATCTCGTTGAGGCGGTGTGGTTAGGGTTCTTGTCGTGTATGCACGACCACAAGATGTT
GTGTCGGTTGCTTCAGATCTATCCAAGGGTTCAACGACGACGGCTGCAACTCCAAGGTGCTGGCCCTTAGGGGCACGTGG
ACGAAAACTTTCCGACTGTCATCCATAAGGTCAAGTTGACTCTAGTAGGGGAACGACGACAACGGCACGTCAGCGGCTTC
TTCTCGTGGCGGTGGTGGTCTTCAATGGTCTAGAGACCTCGATGTTATTTGTATTATGCTTGTGGTGCTTTTCCGATGGA
CTTCTATAATAGATCTCAATCTTTTTCATTAAAAATGTAGCTATCATTTTTGTCAG
>chr1B_52
---------------------------------------------------TCGAACTATCGATGGTCCAAAATTCCACA
GG-AATTGCGCAGGGCCGTACCACACTATTTTCATATTACCAGTCCGGTCCTGGTGTGACCAGTTGGATCAAGCGGCGCA
TCGCACGCGTCGCTTCTACCCACCGGCGCGACGCAGACAGCAAATATACAACTCCTGCCGTACGA-CCCCACCACGACCC
GATCGATCGAGTATGCACGCTGACTCACGGGCAATGACCAACCGCGCTTACGTCATGCCTCGTGACGTCTTCACCCGTCT
TCCTCGTGACGGTCTCTCCCTTTCTGTA--------------------------GAGAGCACGAGGTGCTCTTCCCTTTG
CCCTTTCTCTGACGGGACCGGAGCGAGAGCCCGTTCGTTGTCACAGCCAGCGCCGTCCGGTTTCTTTATTGAAGACCGGG
TCCGGGTCATGGTTTAAGCAAAGGCACACGATCGATCAAACCATTAATCTCCCTAACCTGCCTTGACTAGCCAGGTCCAT
TCTTCTGATTTTTGCGGGGAGACTAGCCAGGTTCATTCAGCGCCAGTGTCAACTCGAAATTGTATTCTTA--TTTTTGCT
GCGAGGACTTTGAATTGTATTTACACTACTAGTAGGTCGTTTCTTCTTGAAGAAAATACACGGTGAATTTT-ACTCCCTG
CGTACGAGT-------------------------------------AGTACTCATACAGTACTAGTGGTATTCAATTATG
CCCACGGAGTGCCCAAAGTCTTCGGTGTTTTCATCGCCAGGAGCACGTCAATATGAACAGTCGACGCCAGCACCCACGGC
GGCCGGCAC-GCCTATAAATTAGCCCGACGTATTATTCGACAGCCTCACCGACTCATCCTCTCTGTCTTGTCTTGTCTCC
CTCCCTCTTTCCC----------TCTCTCTCGCGCGCGCGTGCAATCCGCCGGACCACGACGATCGGCCGGGCCCCAGAG
GCGATGGATGCCACCGCGGCGGACAGGCACGAGGCTTCACCAGTGGCAAGAGACGGCGAGTCCACGACGTCCGTGCCGGA
GGTGCCGCGAGCGCCATTGTCCGACTTGCC------TGTCGCCGGCGGCAGCGGCACGCCCGAGGAGAGCGGCAGCGGCG
AGGACGAGCAGGTGGAGAGGTTCTACGCGCTGCTCGCCAACATCCGGGCACTGAGGGACGTTTACGGCGCCGGCGGGTCG
TCGAGGAAGCGGGCCAGGGGGGCGGAGCCGCCGTTGTGGAAGCCAAAGTTCAGGATGGAGGACTTCCGGGAGGCGGACGA
CGTGGTGCCCGCGAAGAAGGGGAGGAGCGATCGCGTCGAGCGGCAGCGGCTGGAGAACAGCGACGCGGCGGAGGCCGACG
GGGAGGACGGCGAGGTCGTGGAAGAGAATGATCGGGTCTCCGCGTCGCAGACCACGTGTGTGCTGACTGCCGAGCAGCCA
GCCTAGCTAGCCAGTATTCAGAATCCAACAAATTGTCTGGACGATATTTACTTCTAATGTGTACACTATACACCGACGCA
GTCGTTTAATTAGATTTGCCATCTGCCATGTA---TCTTTCCTTTTTGATATCTATTTACACGTACTGACATACTAGAAT
TTAAGTTCCCTAAAAAGACATACTAGTAGAATTTTAAGTAGTTTTGCTATATTTTCTTTGTTATATATGCGACCGACAAA
TAATTATGCCGAATTCACTGCTAAGTGCTAACAAGCTACCAAAC-ACAAATCTAAACATATGATTCATGAAAGGGCAAAA
TGAATGAGATGATCTGATCAGAAGGATATCAATATGTCTAAGAAATGTCTACTGTGTTTATTCGTGACTTTCTCTCCACG
CATTTTCCAGACCATCGGGAAATATATGA--A---AAAAGGCTCAAATGGTATGATTCCTCCGTCACCCCTCTCTCTTCC
CCTCGGCTGCTAGGATAAATTCTCCCCAATGTTTCGTCGGCGAGCCCATAGATCGCTTCCTCTTTGTCTGCTAGTGGCAG
GGAGGAGAGTCACAGTGCCTTCACTCCAGCTAGTAGTTTAGGTTAGGGCTTTCTAATCCTCACATGTGTGGCGCTTTGGG
CAGATGGCGGCACTTATTCTTCGAGTTTCTCTTCTGGATCCAATCCTACTCAAGTTTGTACATCTTGGCATAGTCAAGGG
AGCCTACGCATAGATTACTGCCGTCTCATTGAGGCGGTGTGGTTAGGGTTCTTATCGTACATGCACGATCACGAGATGTT
GTGTCAGTTGCTTCAGATCTATTCAAGGG-TCAACGACGACCACTGCAGCTCCA--------------------------
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>chr1D_52
---------------------------------------------------TCGAACTATCGATGGTCCAAAATTCCACA
CG-AATTGCGCAGGGCCGTACCACACTATTTTCATATTACCAGTCCGGTCCTGGTGTGACCAGTTGGATCAAGCGGCGCA
TCGCACGCGTCGCTTCTACCCACCGGCGCGACGCAGCCAGCAAATATACAACTCCTGCCGTACGA-CCCCACCACGACCC
GATCGATCGAGTATGCACGCTGACTCACGGGCTATGACCAACCGCGCTTACGTCATGCCTCGTGACGTCTTCACCCGTCT
TCCTCGTGACGGTCTCTCCCTTTCTGTA--------------------------GAGAGCACGAGGTGCTCTTCCCTTTG
CCCTTTCTCTGACGGGACCGGAGCGAGAGCCCGTTCGTTGTCACAGCCAGCGCCGTCCGGTTTCTTTATGGAAGACCGGG
TCCGGGTCATGGTTTAAGC-AAGGCACACGATCGATCAAACCATTAATCTCCCTAACCTGCCTTGACTAGCCAGGTCCAT
TCTTCTGATTTTTGCGTGGAGACTAGCCAGGTTCATTCAGCGCCAGTGTCAACTCGAAATTGTATTCTTA--TTTTTGCT
GCGAGGACTTTGAATTGTATTTGC---ACTAGTGGGTCGTTTCTTCTTGAAGAAAATACACGGTGAATTTT-ACTCCCTG
CGTACGAGT-------------------------------------AGTACTCGTACAGTACTAGTGGTATTCAATTATG
CTCACGGAGTGCCCAAAGTCTTCGGTGTTTTCATCGCCAGGAGCACGTCAATATGAACAGTCGACGCCAGCACCCACGGC
GGCCGGCAC-GCCTATAAATTAGCCCGACGTATTATTCGACAGCCTCACCGACTCATCCTCTCTGTCTTGTCTTGTCTCC
CTCCCTCTTTCCCCCTCTCTCTCTCTCTCTCGCGCGCGCGTGCAATCCACCGGACCACGACGATCGGCCGGGCCCCAGAG
GCGATGGATGCCACCGCGGCGGACAGGCACGAGGCTTCACCAGTGGCAAGAGACGGCGAGTCCACGACGTCCGTGCCGGA
GGTGCCGCGAGCGCCATTGTCCGACTTGCC------TGTCGCCGGCGGCAGCGGCACGCCCGAGGAGAGCGGCGGCGGCG
AGGACGAGCAGGTGGAGAGGTTCTACGCGCTGCTCGCCAACATCCGGGCACTGAGGGACGTGTACGGCGCCGGCGGGTCG
TCGAGGAAGCGGGCCAGGGGGGCGGAGGCGCCGTTGTGGAAGCCAAAGTTCAGGATGGAGGATTTCCGGGAGGCGGACGA
CGTGGTGCCCGCGAAGAAGGGGAGGAGCGATCGCGTCGAGCGGCAGCGGCTGGAGAACAGCGACGCGGCGGAGGCCGACG
GGGAGGACGGCGAGGTCGTGGAAGAGAATGATCGGGTCTCCGCGTCGCAGACCACGTGTGTGCTGACTGCCGAGCAGCCA
GCCTAGCTAGCCAGTATTCTGAATCCAACAAATTGTCTGGACGATATT-ACTTCTAATGTGT-------ACACCGACGCA
GTCGTTTAATTAGATTTGCCATCTGCCATGTA---TCTTTCCTTTTTGATATCCATTTACACGTACTGACATAGAAT--T
TTAAGTTCCCTGAAAACACGA--TAGTAGAATTTTAAGTAGTTTTGC--------------TATATATGCGACCGACAAA
TAATTATGCCGAATTCACTGTT-AGTGCTAACAAGCTACCAAACGACAAATCTAAACATATGATTCAAGAAAGGGCAGAA
TGAATGAGATGATCTGATCAGAAGGATATCAATATGTCTAAGAAATGTCTACTGTGTTTATTCATGACTTCCTCTCTGGG
CATTTTCCAGACCATCACGAAATGCATGAAAA---AAAAGGCTCGAATGGTACGATTCCTTTGTCACCCCTCTCTCTTCC
CCTCGGCTGCTAGGACAAATTCTCCCCAAGGTTTAATCAGCGAG-CCATAGGTCGCTTCCTCTTTGTCTGCAGGTGGCAG
GGAGGAGAGTCACAGGGCCTTCACTCCAGCTAGTAGTTTAGGTTGGGGCTTTCTAATCCTCACAGGTGTGGTGCTTTGGG
CAGATGGCGGCACTTAATCTTTGAGTTTGTCTTCTGAATCCGATCCTACTCGAGTTTGTACATCTTGACATAGTCAAGGG
AGCCTACGCATAGATTACTGCCGTCTCATTGAGGCGGTGTGGTTAGGGTTCTTATCGTGCATGCATGATCACGAAATGTT
GTGTCAGTTGCTTCAGATCTATTCAAGGG-TCAACGACGATGACCGCAGCTCCA--------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------
--S---------S-----------SS-S--SSS-S----------------S-----------S----------------
-SS-S------------S-------------S--------S--------S---------------S--------------
S---------S--------------S---------------S--S---S----------S----------------S---
---------S---S----SS---S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------
------S--------S----------------S-----------------------------------------------
--------------------------------------------S-----------------------------S--S--
----------S-------------------------------------------------------SS-SSS--------
-----------------------SS-S-SS-S-SS-SSS-S------------------------------S--------
-----S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------------
-------------------------------------------------------------------------S------
----S----S---------S--S-S---------S-----S---------------------------------------
---S----S--S-------------------S-S-S-S-------S--------------------S-------------
-----------------------------S-----------------S-----------------S------S-------
--------------------------SSSSSSSSSS------S-----------------------------------S-
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--S--------------------------------S--------------------------------------------
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---------------------------------------------S----------------------------------
--------------------------------SSS---------------------------------------------
----------------S------------------------------------------------------S--------
----------------------------------------------------S---------------SS----------
-------S-----------------------------------------------S------------------------
-S------------------------------SSS------------------S-------------------S------
-S-------------------------------------S---------------------------S-----------S
-----S--S------S--------------------------------S------------S---------S--------
--S--S----------------------------------S---------S--------S-----SS-------------
----------------------S----S-------------------------S-----S--------S---S-------
-----S----------------S------S------------S-----S-----SSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_132
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--------------------------------TTTCGTACAAGTCCGGTCCC----------------------------
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>reverse_1974
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-----------------------------------------------------AATTCCTCCGTCACCCCTCT-------
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