Multiple sequence alignment - TraesCS1A01G229000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G229000 chr1A 100.000 2411 0 0 1 2411 400976345 400973935 0.000000e+00 4453.0
1 TraesCS1A01G229000 chr1A 86.231 719 69 21 713 1411 468599493 468598785 0.000000e+00 752.0
2 TraesCS1A01G229000 chr1A 87.298 496 34 14 1938 2411 400962922 400963410 7.580000e-150 540.0
3 TraesCS1A01G229000 chr1A 94.904 314 15 1 1266 1578 400962216 400962529 7.750000e-135 490.0
4 TraesCS1A01G229000 chr1B 91.713 1424 76 22 439 1846 434408536 434409933 0.000000e+00 1938.0
5 TraesCS1A01G229000 chr1B 87.469 1197 97 32 696 1846 434423496 434422307 0.000000e+00 1330.0
6 TraesCS1A01G229000 chr1B 96.934 424 13 0 988 1411 492369059 492368636 0.000000e+00 712.0
7 TraesCS1A01G229000 chr1B 93.634 377 21 3 68 443 434359192 434359566 5.820000e-156 560.0
8 TraesCS1A01G229000 chr1B 84.256 578 45 21 1852 2411 434410002 434410551 2.750000e-144 521.0
9 TraesCS1A01G229000 chr1B 86.427 501 37 17 1938 2411 434422177 434421681 9.880000e-144 520.0
10 TraesCS1A01G229000 chr1B 91.509 106 7 2 214 318 434424183 434424079 6.950000e-31 145.0
11 TraesCS1A01G229000 chr1D 94.760 916 41 6 696 1607 321705256 321704344 0.000000e+00 1419.0
12 TraesCS1A01G229000 chr1D 88.589 1113 68 24 707 1787 321640375 321641460 0.000000e+00 1297.0
13 TraesCS1A01G229000 chr1D 97.356 416 11 0 996 1411 369925931 369925516 0.000000e+00 708.0
14 TraesCS1A01G229000 chr1D 89.867 375 30 5 1938 2306 321704122 321703750 2.170000e-130 475.0
15 TraesCS1A01G229000 chr1D 92.653 245 14 4 78 320 321332409 321332651 1.370000e-92 350.0
16 TraesCS1A01G229000 chr1D 88.966 290 17 6 1938 2212 321641629 321641918 6.380000e-91 344.0
17 TraesCS1A01G229000 chr1D 89.041 146 11 2 2200 2340 321667082 321667227 2.460000e-40 176.0
18 TraesCS1A01G229000 chr1D 94.667 75 4 0 2337 2411 321667591 321667665 1.510000e-22 117.0
19 TraesCS1A01G229000 chr1D 90.141 71 7 0 1852 1922 321641569 321641639 2.550000e-15 93.5
20 TraesCS1A01G229000 chr4D 88.456 719 58 17 713 1411 444176988 444177701 0.000000e+00 845.0
21 TraesCS1A01G229000 chr4A 88.022 718 56 21 715 1411 23611515 23610807 0.000000e+00 822.0
22 TraesCS1A01G229000 chr3A 79.837 491 53 27 1938 2402 27128278 27128748 1.390000e-82 316.0
23 TraesCS1A01G229000 chr3A 79.796 490 54 26 1938 2402 27167837 27168306 5.000000e-82 315.0
24 TraesCS1A01G229000 chr3A 79.550 489 57 27 1938 2402 27069691 27070160 2.330000e-80 309.0
25 TraesCS1A01G229000 chr3A 79.430 491 55 27 1938 2402 27213451 27213921 3.010000e-79 305.0
26 TraesCS1A01G229000 chr5B 91.623 191 12 3 133 321 15815305 15815117 6.610000e-66 261.0
27 TraesCS1A01G229000 chr5B 90.526 190 14 3 133 321 239161977 239162163 5.150000e-62 248.0
28 TraesCS1A01G229000 chr7A 93.333 75 5 0 2337 2411 729055747 729055673 7.050000e-21 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G229000 chr1A 400973935 400976345 2410 True 4453.000000 4453 100.000000 1 2411 1 chr1A.!!$R1 2410
1 TraesCS1A01G229000 chr1A 468598785 468599493 708 True 752.000000 752 86.231000 713 1411 1 chr1A.!!$R2 698
2 TraesCS1A01G229000 chr1A 400962216 400963410 1194 False 515.000000 540 91.101000 1266 2411 2 chr1A.!!$F1 1145
3 TraesCS1A01G229000 chr1B 434408536 434410551 2015 False 1229.500000 1938 87.984500 439 2411 2 chr1B.!!$F2 1972
4 TraesCS1A01G229000 chr1B 434421681 434424183 2502 True 665.000000 1330 88.468333 214 2411 3 chr1B.!!$R2 2197
5 TraesCS1A01G229000 chr1D 321703750 321705256 1506 True 947.000000 1419 92.313500 696 2306 2 chr1D.!!$R2 1610
6 TraesCS1A01G229000 chr1D 321640375 321641918 1543 False 578.166667 1297 89.232000 707 2212 3 chr1D.!!$F2 1505
7 TraesCS1A01G229000 chr4D 444176988 444177701 713 False 845.000000 845 88.456000 713 1411 1 chr4D.!!$F1 698
8 TraesCS1A01G229000 chr4A 23610807 23611515 708 True 822.000000 822 88.022000 715 1411 1 chr4A.!!$R1 696

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
411 412 0.031178 GTGCTTGCCTGTTCTTGGTG 59.969 55.0 0.0 0.0 0.0 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1683 2058 0.179048 TGAACTGGGGCATATGAGCG 60.179 55.0 6.97 0.0 34.64 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.409856 CGGAATGCGGATGACCAC 58.590 61.111 12.29 0.00 35.59 4.16
18 19 1.153369 CGGAATGCGGATGACCACT 60.153 57.895 12.29 0.00 35.59 4.00
19 20 0.104120 CGGAATGCGGATGACCACTA 59.896 55.000 12.29 0.00 35.59 2.74
20 21 1.583054 GGAATGCGGATGACCACTAC 58.417 55.000 8.16 0.00 35.59 2.73
21 22 1.139058 GGAATGCGGATGACCACTACT 59.861 52.381 8.16 0.00 35.59 2.57
22 23 2.420129 GGAATGCGGATGACCACTACTT 60.420 50.000 8.16 0.00 35.59 2.24
23 24 2.604046 ATGCGGATGACCACTACTTC 57.396 50.000 0.00 0.00 35.59 3.01
24 25 0.172578 TGCGGATGACCACTACTTCG 59.827 55.000 0.00 0.00 35.59 3.79
25 26 0.454600 GCGGATGACCACTACTTCGA 59.545 55.000 0.00 0.00 35.59 3.71
26 27 1.798079 GCGGATGACCACTACTTCGAC 60.798 57.143 0.00 0.00 35.59 4.20
27 28 1.531264 CGGATGACCACTACTTCGACG 60.531 57.143 0.00 0.00 35.59 5.12
28 29 1.741706 GGATGACCACTACTTCGACGA 59.258 52.381 0.00 0.00 35.97 4.20
29 30 2.477525 GGATGACCACTACTTCGACGAC 60.478 54.545 0.00 0.00 35.97 4.34
30 31 0.514255 TGACCACTACTTCGACGACG 59.486 55.000 0.00 0.00 41.26 5.12
39 40 4.366603 TCGACGACGAGGACAGAA 57.633 55.556 5.75 0.00 43.81 3.02
40 41 2.160063 TCGACGACGAGGACAGAAG 58.840 57.895 5.75 0.00 43.81 2.85
41 42 1.134901 CGACGACGAGGACAGAAGG 59.865 63.158 0.00 0.00 42.66 3.46
42 43 1.153997 GACGACGAGGACAGAAGGC 60.154 63.158 0.00 0.00 0.00 4.35
43 44 1.863662 GACGACGAGGACAGAAGGCA 61.864 60.000 0.00 0.00 0.00 4.75
44 45 1.153939 CGACGAGGACAGAAGGCAG 60.154 63.158 0.00 0.00 0.00 4.85
45 46 1.587043 CGACGAGGACAGAAGGCAGA 61.587 60.000 0.00 0.00 0.00 4.26
46 47 0.820871 GACGAGGACAGAAGGCAGAT 59.179 55.000 0.00 0.00 0.00 2.90
47 48 0.820871 ACGAGGACAGAAGGCAGATC 59.179 55.000 0.00 0.00 0.00 2.75
48 49 0.820226 CGAGGACAGAAGGCAGATCA 59.180 55.000 0.00 0.00 0.00 2.92
49 50 1.202394 CGAGGACAGAAGGCAGATCAG 60.202 57.143 0.00 0.00 0.00 2.90
50 51 1.138661 GAGGACAGAAGGCAGATCAGG 59.861 57.143 0.00 0.00 0.00 3.86
51 52 0.179936 GGACAGAAGGCAGATCAGGG 59.820 60.000 0.00 0.00 0.00 4.45
52 53 0.908198 GACAGAAGGCAGATCAGGGT 59.092 55.000 0.00 0.00 0.00 4.34
53 54 1.280421 GACAGAAGGCAGATCAGGGTT 59.720 52.381 0.00 0.00 0.00 4.11
54 55 1.004044 ACAGAAGGCAGATCAGGGTTG 59.996 52.381 0.00 0.00 0.00 3.77
55 56 1.004044 CAGAAGGCAGATCAGGGTTGT 59.996 52.381 0.00 0.00 0.00 3.32
56 57 1.707427 AGAAGGCAGATCAGGGTTGTT 59.293 47.619 0.00 0.00 0.00 2.83
57 58 2.912956 AGAAGGCAGATCAGGGTTGTTA 59.087 45.455 0.00 0.00 0.00 2.41
58 59 2.789409 AGGCAGATCAGGGTTGTTAC 57.211 50.000 0.00 0.00 0.00 2.50
59 60 1.282157 AGGCAGATCAGGGTTGTTACC 59.718 52.381 0.00 0.00 44.22 2.85
60 61 1.369625 GCAGATCAGGGTTGTTACCG 58.630 55.000 0.00 0.00 46.04 4.02
61 62 1.066430 GCAGATCAGGGTTGTTACCGA 60.066 52.381 0.00 0.00 46.04 4.69
62 63 2.614481 GCAGATCAGGGTTGTTACCGAA 60.614 50.000 0.00 0.00 46.04 4.30
63 64 3.262420 CAGATCAGGGTTGTTACCGAAG 58.738 50.000 0.00 0.00 46.04 3.79
64 65 2.007608 GATCAGGGTTGTTACCGAAGC 58.992 52.381 0.00 0.00 46.04 3.86
65 66 0.759959 TCAGGGTTGTTACCGAAGCA 59.240 50.000 0.00 0.00 46.04 3.91
66 67 1.141254 TCAGGGTTGTTACCGAAGCAA 59.859 47.619 0.00 0.00 46.04 3.91
67 68 1.535462 CAGGGTTGTTACCGAAGCAAG 59.465 52.381 0.00 0.00 46.04 4.01
68 69 0.240145 GGGTTGTTACCGAAGCAAGC 59.760 55.000 7.59 7.59 46.04 4.01
69 70 0.240145 GGTTGTTACCGAAGCAAGCC 59.760 55.000 5.59 0.44 35.39 4.35
70 71 1.235724 GTTGTTACCGAAGCAAGCCT 58.764 50.000 0.00 0.00 0.00 4.58
71 72 1.197036 GTTGTTACCGAAGCAAGCCTC 59.803 52.381 0.00 0.00 0.00 4.70
72 73 0.685097 TGTTACCGAAGCAAGCCTCT 59.315 50.000 0.00 0.00 0.00 3.69
73 74 1.071699 TGTTACCGAAGCAAGCCTCTT 59.928 47.619 0.00 0.00 0.00 2.85
74 75 2.152016 GTTACCGAAGCAAGCCTCTTT 58.848 47.619 0.00 0.00 0.00 2.52
75 76 3.244284 TGTTACCGAAGCAAGCCTCTTTA 60.244 43.478 0.00 0.00 0.00 1.85
76 77 2.561478 ACCGAAGCAAGCCTCTTTAA 57.439 45.000 0.00 0.00 0.00 1.52
77 78 2.858745 ACCGAAGCAAGCCTCTTTAAA 58.141 42.857 0.00 0.00 0.00 1.52
78 79 3.421844 ACCGAAGCAAGCCTCTTTAAAT 58.578 40.909 0.00 0.00 0.00 1.40
79 80 3.826729 ACCGAAGCAAGCCTCTTTAAATT 59.173 39.130 0.00 0.00 0.00 1.82
80 81 4.168760 CCGAAGCAAGCCTCTTTAAATTG 58.831 43.478 0.00 0.00 0.00 2.32
81 82 4.321230 CCGAAGCAAGCCTCTTTAAATTGT 60.321 41.667 0.00 0.00 0.00 2.71
82 83 4.853743 CGAAGCAAGCCTCTTTAAATTGTC 59.146 41.667 0.00 0.00 0.00 3.18
83 84 5.562696 CGAAGCAAGCCTCTTTAAATTGTCA 60.563 40.000 0.00 0.00 0.00 3.58
84 85 5.789643 AGCAAGCCTCTTTAAATTGTCAA 57.210 34.783 0.00 0.00 0.00 3.18
85 86 5.776744 AGCAAGCCTCTTTAAATTGTCAAG 58.223 37.500 0.00 0.00 0.00 3.02
86 87 5.302823 AGCAAGCCTCTTTAAATTGTCAAGT 59.697 36.000 0.00 0.00 0.00 3.16
87 88 5.985530 GCAAGCCTCTTTAAATTGTCAAGTT 59.014 36.000 3.47 3.47 0.00 2.66
88 89 6.144563 GCAAGCCTCTTTAAATTGTCAAGTTC 59.855 38.462 0.75 0.00 0.00 3.01
89 90 6.002062 AGCCTCTTTAAATTGTCAAGTTCG 57.998 37.500 0.75 0.00 0.00 3.95
90 91 5.048713 AGCCTCTTTAAATTGTCAAGTTCGG 60.049 40.000 0.75 0.00 0.00 4.30
91 92 5.154222 CCTCTTTAAATTGTCAAGTTCGGC 58.846 41.667 0.75 0.00 0.00 5.54
92 93 5.116069 TCTTTAAATTGTCAAGTTCGGCC 57.884 39.130 0.75 0.00 0.00 6.13
93 94 4.580995 TCTTTAAATTGTCAAGTTCGGCCA 59.419 37.500 2.24 0.00 0.00 5.36
94 95 4.497473 TTAAATTGTCAAGTTCGGCCAG 57.503 40.909 2.24 0.00 0.00 4.85
95 96 1.981256 AATTGTCAAGTTCGGCCAGT 58.019 45.000 2.24 0.00 0.00 4.00
96 97 1.523758 ATTGTCAAGTTCGGCCAGTC 58.476 50.000 2.24 0.00 0.00 3.51
97 98 0.179234 TTGTCAAGTTCGGCCAGTCA 59.821 50.000 2.24 0.00 0.00 3.41
98 99 0.531974 TGTCAAGTTCGGCCAGTCAC 60.532 55.000 2.24 0.00 0.00 3.67
99 100 0.249911 GTCAAGTTCGGCCAGTCACT 60.250 55.000 2.24 0.00 0.00 3.41
100 101 0.249868 TCAAGTTCGGCCAGTCACTG 60.250 55.000 2.24 0.00 0.00 3.66
101 102 0.532862 CAAGTTCGGCCAGTCACTGT 60.533 55.000 2.24 0.00 0.00 3.55
102 103 0.249911 AAGTTCGGCCAGTCACTGTC 60.250 55.000 2.24 0.00 0.00 3.51
103 104 1.668151 GTTCGGCCAGTCACTGTCC 60.668 63.158 2.24 0.00 0.00 4.02
104 105 2.137528 TTCGGCCAGTCACTGTCCA 61.138 57.895 5.56 0.00 27.43 4.02
105 106 1.480212 TTCGGCCAGTCACTGTCCAT 61.480 55.000 5.56 0.00 27.43 3.41
106 107 1.003355 CGGCCAGTCACTGTCCATT 60.003 57.895 5.56 0.00 27.43 3.16
107 108 0.606401 CGGCCAGTCACTGTCCATTT 60.606 55.000 5.56 0.00 27.43 2.32
108 109 1.168714 GGCCAGTCACTGTCCATTTC 58.831 55.000 0.00 0.00 28.94 2.17
109 110 1.271597 GGCCAGTCACTGTCCATTTCT 60.272 52.381 0.00 0.00 28.94 2.52
110 111 2.508526 GCCAGTCACTGTCCATTTCTT 58.491 47.619 3.56 0.00 0.00 2.52
111 112 2.227388 GCCAGTCACTGTCCATTTCTTG 59.773 50.000 3.56 0.00 0.00 3.02
112 113 2.227388 CCAGTCACTGTCCATTTCTTGC 59.773 50.000 3.56 0.00 0.00 4.01
113 114 3.144506 CAGTCACTGTCCATTTCTTGCT 58.855 45.455 0.00 0.00 0.00 3.91
114 115 4.318332 CAGTCACTGTCCATTTCTTGCTA 58.682 43.478 0.00 0.00 0.00 3.49
115 116 4.391216 CAGTCACTGTCCATTTCTTGCTAG 59.609 45.833 0.00 0.00 0.00 3.42
116 117 4.284490 AGTCACTGTCCATTTCTTGCTAGA 59.716 41.667 0.00 0.00 0.00 2.43
117 118 4.997395 GTCACTGTCCATTTCTTGCTAGAA 59.003 41.667 6.50 6.50 38.61 2.10
118 119 5.121454 GTCACTGTCCATTTCTTGCTAGAAG 59.879 44.000 10.46 1.01 41.25 2.85
119 120 4.006319 ACTGTCCATTTCTTGCTAGAAGC 58.994 43.478 10.46 0.00 41.25 3.86
120 121 4.260170 CTGTCCATTTCTTGCTAGAAGCT 58.740 43.478 10.46 0.68 42.97 3.74
121 122 4.005650 TGTCCATTTCTTGCTAGAAGCTG 58.994 43.478 10.46 11.62 42.97 4.24
122 123 3.376546 GTCCATTTCTTGCTAGAAGCTGG 59.623 47.826 23.46 23.46 42.97 4.85
123 124 3.009473 TCCATTTCTTGCTAGAAGCTGGT 59.991 43.478 25.87 8.00 42.97 4.00
124 125 3.760684 CCATTTCTTGCTAGAAGCTGGTT 59.239 43.478 22.21 0.00 42.97 3.67
125 126 4.943705 CCATTTCTTGCTAGAAGCTGGTTA 59.056 41.667 22.21 6.19 42.97 2.85
126 127 5.163713 CCATTTCTTGCTAGAAGCTGGTTAC 60.164 44.000 22.21 0.00 42.97 2.50
127 128 4.891992 TTCTTGCTAGAAGCTGGTTACT 57.108 40.909 6.50 0.00 42.97 2.24
128 129 4.193826 TCTTGCTAGAAGCTGGTTACTG 57.806 45.455 0.00 0.00 42.97 2.74
129 130 3.578716 TCTTGCTAGAAGCTGGTTACTGT 59.421 43.478 0.00 0.00 42.97 3.55
130 131 4.040461 TCTTGCTAGAAGCTGGTTACTGTT 59.960 41.667 0.00 0.00 42.97 3.16
131 132 3.926616 TGCTAGAAGCTGGTTACTGTTC 58.073 45.455 0.00 0.00 42.97 3.18
132 133 3.323691 TGCTAGAAGCTGGTTACTGTTCA 59.676 43.478 0.00 0.00 42.97 3.18
133 134 4.202315 TGCTAGAAGCTGGTTACTGTTCAA 60.202 41.667 0.00 0.00 42.97 2.69
134 135 4.755123 GCTAGAAGCTGGTTACTGTTCAAA 59.245 41.667 0.00 0.00 38.45 2.69
135 136 5.106908 GCTAGAAGCTGGTTACTGTTCAAAG 60.107 44.000 0.00 0.00 38.45 2.77
136 137 4.781934 AGAAGCTGGTTACTGTTCAAAGT 58.218 39.130 0.00 0.00 0.00 2.66
137 138 4.576463 AGAAGCTGGTTACTGTTCAAAGTG 59.424 41.667 0.00 0.00 0.00 3.16
138 139 3.214328 AGCTGGTTACTGTTCAAAGTGG 58.786 45.455 0.00 0.00 0.00 4.00
139 140 2.949644 GCTGGTTACTGTTCAAAGTGGT 59.050 45.455 0.00 0.00 0.00 4.16
140 141 3.243068 GCTGGTTACTGTTCAAAGTGGTG 60.243 47.826 0.00 0.00 0.00 4.17
141 142 4.196193 CTGGTTACTGTTCAAAGTGGTGA 58.804 43.478 0.00 0.00 0.00 4.02
142 143 4.787551 TGGTTACTGTTCAAAGTGGTGAT 58.212 39.130 0.00 0.00 0.00 3.06
143 144 4.819630 TGGTTACTGTTCAAAGTGGTGATC 59.180 41.667 0.00 0.00 0.00 2.92
144 145 5.063880 GGTTACTGTTCAAAGTGGTGATCT 58.936 41.667 0.00 0.00 0.00 2.75
145 146 5.049405 GGTTACTGTTCAAAGTGGTGATCTG 60.049 44.000 0.00 0.00 0.00 2.90
146 147 3.480470 ACTGTTCAAAGTGGTGATCTGG 58.520 45.455 0.00 0.00 0.00 3.86
147 148 3.136443 ACTGTTCAAAGTGGTGATCTGGA 59.864 43.478 0.00 0.00 0.00 3.86
148 149 3.476552 TGTTCAAAGTGGTGATCTGGAC 58.523 45.455 0.00 0.00 0.00 4.02
149 150 3.136443 TGTTCAAAGTGGTGATCTGGACT 59.864 43.478 0.00 0.00 0.00 3.85
150 151 3.685139 TCAAAGTGGTGATCTGGACTC 57.315 47.619 0.00 0.00 0.00 3.36
151 152 3.242867 TCAAAGTGGTGATCTGGACTCT 58.757 45.455 0.00 0.00 0.00 3.24
152 153 3.259374 TCAAAGTGGTGATCTGGACTCTC 59.741 47.826 0.00 0.00 0.00 3.20
153 154 2.612285 AGTGGTGATCTGGACTCTCA 57.388 50.000 0.00 0.00 0.00 3.27
154 155 3.113191 AGTGGTGATCTGGACTCTCAT 57.887 47.619 0.00 0.00 0.00 2.90
155 156 3.448934 AGTGGTGATCTGGACTCTCATT 58.551 45.455 0.00 0.00 0.00 2.57
156 157 3.843027 AGTGGTGATCTGGACTCTCATTT 59.157 43.478 0.00 0.00 0.00 2.32
157 158 4.288105 AGTGGTGATCTGGACTCTCATTTT 59.712 41.667 0.00 0.00 0.00 1.82
158 159 5.006386 GTGGTGATCTGGACTCTCATTTTT 58.994 41.667 0.00 0.00 0.00 1.94
159 160 6.013379 AGTGGTGATCTGGACTCTCATTTTTA 60.013 38.462 0.00 0.00 0.00 1.52
160 161 6.825721 GTGGTGATCTGGACTCTCATTTTTAT 59.174 38.462 0.00 0.00 0.00 1.40
161 162 6.825213 TGGTGATCTGGACTCTCATTTTTATG 59.175 38.462 0.00 0.00 0.00 1.90
162 163 6.238593 GGTGATCTGGACTCTCATTTTTATGC 60.239 42.308 0.00 0.00 0.00 3.14
163 164 6.317140 GTGATCTGGACTCTCATTTTTATGCA 59.683 38.462 0.00 0.00 0.00 3.96
164 165 6.317140 TGATCTGGACTCTCATTTTTATGCAC 59.683 38.462 0.00 0.00 0.00 4.57
165 166 4.943705 TCTGGACTCTCATTTTTATGCACC 59.056 41.667 0.00 0.00 0.00 5.01
166 167 3.689161 TGGACTCTCATTTTTATGCACCG 59.311 43.478 0.00 0.00 0.00 4.94
167 168 3.689649 GGACTCTCATTTTTATGCACCGT 59.310 43.478 0.00 0.00 0.00 4.83
168 169 4.156008 GGACTCTCATTTTTATGCACCGTT 59.844 41.667 0.00 0.00 0.00 4.44
169 170 5.046910 ACTCTCATTTTTATGCACCGTTG 57.953 39.130 0.00 0.00 0.00 4.10
170 171 4.082787 ACTCTCATTTTTATGCACCGTTGG 60.083 41.667 0.00 0.00 0.00 3.77
171 172 3.823873 TCTCATTTTTATGCACCGTTGGT 59.176 39.130 0.00 0.00 35.62 3.67
185 186 5.786264 ACCGTTGGTGAATCTACTATAGG 57.214 43.478 4.43 0.00 32.98 2.57
186 187 5.452255 ACCGTTGGTGAATCTACTATAGGA 58.548 41.667 4.43 0.00 32.98 2.94
187 188 5.535406 ACCGTTGGTGAATCTACTATAGGAG 59.465 44.000 5.51 5.51 32.98 3.69
188 189 5.462405 CGTTGGTGAATCTACTATAGGAGC 58.538 45.833 7.15 0.00 0.00 4.70
189 190 5.462405 GTTGGTGAATCTACTATAGGAGCG 58.538 45.833 7.15 0.00 0.00 5.03
190 191 4.079970 TGGTGAATCTACTATAGGAGCGG 58.920 47.826 7.15 0.00 0.00 5.52
191 192 4.080687 GGTGAATCTACTATAGGAGCGGT 58.919 47.826 7.15 0.00 0.00 5.68
192 193 4.156373 GGTGAATCTACTATAGGAGCGGTC 59.844 50.000 7.15 5.93 0.00 4.79
193 194 5.005094 GTGAATCTACTATAGGAGCGGTCT 58.995 45.833 15.18 3.26 0.00 3.85
194 195 5.004448 TGAATCTACTATAGGAGCGGTCTG 58.996 45.833 15.18 3.01 0.00 3.51
195 196 2.780714 TCTACTATAGGAGCGGTCTGC 58.219 52.381 15.18 0.00 46.98 4.26
204 205 3.876300 GCGGTCTGCTGGTTGTAG 58.124 61.111 0.00 0.00 41.73 2.74
205 206 1.004918 GCGGTCTGCTGGTTGTAGT 60.005 57.895 0.00 0.00 41.73 2.73
206 207 0.602905 GCGGTCTGCTGGTTGTAGTT 60.603 55.000 0.00 0.00 41.73 2.24
207 208 1.148310 CGGTCTGCTGGTTGTAGTTG 58.852 55.000 0.00 0.00 0.00 3.16
208 209 0.875059 GGTCTGCTGGTTGTAGTTGC 59.125 55.000 0.00 0.00 0.00 4.17
209 210 1.543429 GGTCTGCTGGTTGTAGTTGCT 60.543 52.381 0.00 0.00 0.00 3.91
210 211 1.532868 GTCTGCTGGTTGTAGTTGCTG 59.467 52.381 0.00 0.00 0.00 4.41
211 212 1.416030 TCTGCTGGTTGTAGTTGCTGA 59.584 47.619 0.00 0.00 0.00 4.26
212 213 1.532868 CTGCTGGTTGTAGTTGCTGAC 59.467 52.381 0.00 0.00 0.00 3.51
217 218 1.266989 GGTTGTAGTTGCTGACTTGGC 59.733 52.381 0.00 0.00 39.86 4.52
238 239 1.210478 GTGCCAGTATCATGGACCAGT 59.790 52.381 0.00 0.00 43.57 4.00
240 241 3.111484 TGCCAGTATCATGGACCAGTAA 58.889 45.455 0.00 0.00 43.57 2.24
241 242 3.716353 TGCCAGTATCATGGACCAGTAAT 59.284 43.478 0.00 0.00 43.57 1.89
242 243 4.904853 TGCCAGTATCATGGACCAGTAATA 59.095 41.667 0.00 0.00 43.57 0.98
281 282 8.306038 TGTAGAGTTTGGATTTCAAATGGAATG 58.694 33.333 0.00 0.00 45.79 2.67
299 300 7.809546 TGGAATGTGAAATGTGTGTACTTAA 57.190 32.000 0.00 0.00 0.00 1.85
300 301 7.644490 TGGAATGTGAAATGTGTGTACTTAAC 58.356 34.615 0.00 0.00 0.00 2.01
309 310 8.691661 AAATGTGTGTACTTAACTGAAGGAAT 57.308 30.769 0.00 0.00 39.74 3.01
310 311 8.691661 AATGTGTGTACTTAACTGAAGGAATT 57.308 30.769 0.00 0.00 39.74 2.17
318 319 9.880064 GTACTTAACTGAAGGAATTGAAACTTC 57.120 33.333 0.00 0.00 39.74 3.01
320 321 9.847224 ACTTAACTGAAGGAATTGAAACTTCTA 57.153 29.630 0.00 0.00 40.83 2.10
322 323 6.809630 ACTGAAGGAATTGAAACTTCTAGC 57.190 37.500 0.00 0.00 40.83 3.42
324 325 6.429385 ACTGAAGGAATTGAAACTTCTAGCAG 59.571 38.462 0.00 0.00 40.83 4.24
325 326 5.182001 TGAAGGAATTGAAACTTCTAGCAGC 59.818 40.000 0.00 0.00 40.83 5.25
326 327 4.013050 AGGAATTGAAACTTCTAGCAGCC 58.987 43.478 0.00 0.00 0.00 4.85
328 329 2.543777 TTGAAACTTCTAGCAGCCGT 57.456 45.000 0.00 0.00 0.00 5.68
329 330 2.543777 TGAAACTTCTAGCAGCCGTT 57.456 45.000 0.00 0.00 0.00 4.44
330 331 2.143122 TGAAACTTCTAGCAGCCGTTG 58.857 47.619 0.00 0.00 0.00 4.10
331 332 1.464997 GAAACTTCTAGCAGCCGTTGG 59.535 52.381 0.00 0.00 0.00 3.77
334 335 0.320771 CTTCTAGCAGCCGTTGGTGT 60.321 55.000 0.00 0.00 42.04 4.16
335 336 0.107831 TTCTAGCAGCCGTTGGTGTT 59.892 50.000 0.00 0.00 42.04 3.32
336 337 0.107831 TCTAGCAGCCGTTGGTGTTT 59.892 50.000 0.00 0.00 42.04 2.83
337 338 0.238289 CTAGCAGCCGTTGGTGTTTG 59.762 55.000 0.00 0.00 42.04 2.93
338 339 1.791103 TAGCAGCCGTTGGTGTTTGC 61.791 55.000 0.00 0.00 42.04 3.68
341 342 2.027460 GCCGTTGGTGTTTGCCTG 59.973 61.111 0.00 0.00 0.00 4.85
342 343 2.781158 GCCGTTGGTGTTTGCCTGT 61.781 57.895 0.00 0.00 0.00 4.00
343 344 1.813192 CCGTTGGTGTTTGCCTGTT 59.187 52.632 0.00 0.00 0.00 3.16
344 345 0.248866 CCGTTGGTGTTTGCCTGTTC 60.249 55.000 0.00 0.00 0.00 3.18
345 346 0.738389 CGTTGGTGTTTGCCTGTTCT 59.262 50.000 0.00 0.00 0.00 3.01
346 347 1.944024 CGTTGGTGTTTGCCTGTTCTA 59.056 47.619 0.00 0.00 0.00 2.10
348 349 1.604604 TGGTGTTTGCCTGTTCTAGC 58.395 50.000 0.00 0.00 0.00 3.42
349 350 1.133945 TGGTGTTTGCCTGTTCTAGCA 60.134 47.619 0.00 0.00 37.18 3.49
350 351 1.537202 GGTGTTTGCCTGTTCTAGCAG 59.463 52.381 0.00 0.00 40.73 4.24
351 352 2.222027 GTGTTTGCCTGTTCTAGCAGT 58.778 47.619 0.00 0.00 40.73 4.40
352 353 2.224314 GTGTTTGCCTGTTCTAGCAGTC 59.776 50.000 0.00 0.00 40.73 3.51
353 354 2.104792 TGTTTGCCTGTTCTAGCAGTCT 59.895 45.455 0.00 0.00 40.73 3.24
354 355 2.462456 TTGCCTGTTCTAGCAGTCTG 57.538 50.000 0.00 0.00 40.73 3.51
355 356 0.610174 TGCCTGTTCTAGCAGTCTGG 59.390 55.000 1.14 0.00 34.84 3.86
356 357 0.898320 GCCTGTTCTAGCAGTCTGGA 59.102 55.000 1.14 0.00 34.84 3.86
360 361 3.129638 CCTGTTCTAGCAGTCTGGAGTAC 59.870 52.174 1.14 0.00 34.84 2.73
361 362 4.013728 CTGTTCTAGCAGTCTGGAGTACT 58.986 47.826 0.00 0.00 31.23 2.73
363 364 4.833380 TGTTCTAGCAGTCTGGAGTACTTT 59.167 41.667 0.00 0.00 31.23 2.66
365 366 6.492429 TGTTCTAGCAGTCTGGAGTACTTTTA 59.508 38.462 0.00 0.00 31.23 1.52
370 371 9.871238 CTAGCAGTCTGGAGTACTTTTATTTAA 57.129 33.333 0.00 0.00 0.00 1.52
371 372 8.779354 AGCAGTCTGGAGTACTTTTATTTAAG 57.221 34.615 0.00 0.00 0.00 1.85
372 373 8.594550 AGCAGTCTGGAGTACTTTTATTTAAGA 58.405 33.333 0.00 0.00 0.00 2.10
373 374 8.874816 GCAGTCTGGAGTACTTTTATTTAAGAG 58.125 37.037 0.00 0.00 0.00 2.85
374 375 9.372369 CAGTCTGGAGTACTTTTATTTAAGAGG 57.628 37.037 0.00 0.00 0.00 3.69
375 376 8.541234 AGTCTGGAGTACTTTTATTTAAGAGGG 58.459 37.037 0.00 0.00 0.00 4.30
376 377 7.280428 GTCTGGAGTACTTTTATTTAAGAGGGC 59.720 40.741 0.00 0.00 0.00 5.19
377 378 7.023171 TGGAGTACTTTTATTTAAGAGGGCA 57.977 36.000 0.00 0.00 0.00 5.36
379 380 7.610305 TGGAGTACTTTTATTTAAGAGGGCAAG 59.390 37.037 0.00 0.00 0.00 4.01
381 382 8.794335 AGTACTTTTATTTAAGAGGGCAAGAG 57.206 34.615 0.00 0.00 0.00 2.85
382 383 6.516739 ACTTTTATTTAAGAGGGCAAGAGC 57.483 37.500 0.00 0.00 41.10 4.09
383 384 6.010219 ACTTTTATTTAAGAGGGCAAGAGCA 58.990 36.000 0.00 0.00 44.61 4.26
384 385 6.665248 ACTTTTATTTAAGAGGGCAAGAGCAT 59.335 34.615 0.00 0.00 44.61 3.79
385 386 6.455360 TTTATTTAAGAGGGCAAGAGCATG 57.545 37.500 0.00 0.00 44.61 4.06
386 387 2.425143 TTAAGAGGGCAAGAGCATGG 57.575 50.000 0.00 0.00 44.61 3.66
387 388 0.107017 TAAGAGGGCAAGAGCATGGC 60.107 55.000 0.00 2.67 44.61 4.40
391 392 2.890371 GGCAAGAGCATGGCCTTG 59.110 61.111 14.22 14.22 44.32 3.61
392 393 2.718073 GGCAAGAGCATGGCCTTGG 61.718 63.158 19.47 4.34 44.32 3.61
394 395 1.888018 CAAGAGCATGGCCTTGGTG 59.112 57.895 26.25 9.79 35.11 4.17
397 398 2.118951 AGCATGGCCTTGGTGCTT 59.881 55.556 21.37 6.00 46.29 3.91
398 399 2.263540 GCATGGCCTTGGTGCTTG 59.736 61.111 19.47 0.00 36.02 4.01
399 400 2.263540 CATGGCCTTGGTGCTTGC 59.736 61.111 10.81 0.00 0.00 4.01
400 401 2.999063 ATGGCCTTGGTGCTTGCC 60.999 61.111 3.32 0.00 44.27 4.52
402 403 3.688159 GGCCTTGGTGCTTGCCTG 61.688 66.667 0.00 0.00 40.77 4.85
404 405 2.501602 GCCTTGGTGCTTGCCTGTT 61.502 57.895 0.00 0.00 0.00 3.16
405 406 1.662044 CCTTGGTGCTTGCCTGTTC 59.338 57.895 0.00 0.00 0.00 3.18
406 407 0.825010 CCTTGGTGCTTGCCTGTTCT 60.825 55.000 0.00 0.00 0.00 3.01
407 408 1.035139 CTTGGTGCTTGCCTGTTCTT 58.965 50.000 0.00 0.00 0.00 2.52
408 409 0.746063 TTGGTGCTTGCCTGTTCTTG 59.254 50.000 0.00 0.00 0.00 3.02
409 410 1.108727 TGGTGCTTGCCTGTTCTTGG 61.109 55.000 0.00 0.00 0.00 3.61
410 411 1.109323 GGTGCTTGCCTGTTCTTGGT 61.109 55.000 0.00 0.00 0.00 3.67
411 412 0.031178 GTGCTTGCCTGTTCTTGGTG 59.969 55.000 0.00 0.00 0.00 4.17
414 415 2.224744 TGCTTGCCTGTTCTTGGTGATA 60.225 45.455 0.00 0.00 0.00 2.15
416 417 3.181493 GCTTGCCTGTTCTTGGTGATATG 60.181 47.826 0.00 0.00 0.00 1.78
417 418 3.719268 TGCCTGTTCTTGGTGATATGT 57.281 42.857 0.00 0.00 0.00 2.29
418 419 4.032960 TGCCTGTTCTTGGTGATATGTT 57.967 40.909 0.00 0.00 0.00 2.71
419 420 4.009675 TGCCTGTTCTTGGTGATATGTTC 58.990 43.478 0.00 0.00 0.00 3.18
420 421 4.263462 TGCCTGTTCTTGGTGATATGTTCT 60.263 41.667 0.00 0.00 0.00 3.01
421 422 4.095483 GCCTGTTCTTGGTGATATGTTCTG 59.905 45.833 0.00 0.00 0.00 3.02
423 424 4.009675 TGTTCTTGGTGATATGTTCTGGC 58.990 43.478 0.00 0.00 0.00 4.85
425 426 4.508551 TCTTGGTGATATGTTCTGGCAT 57.491 40.909 0.00 0.00 0.00 4.40
427 428 5.368145 TCTTGGTGATATGTTCTGGCATAC 58.632 41.667 0.00 0.00 34.59 2.39
428 429 4.769345 TGGTGATATGTTCTGGCATACA 57.231 40.909 5.24 5.24 34.59 2.29
429 430 5.308976 TGGTGATATGTTCTGGCATACAT 57.691 39.130 16.44 16.44 38.46 2.29
430 431 5.693961 TGGTGATATGTTCTGGCATACATT 58.306 37.500 17.15 8.24 36.46 2.71
490 672 1.022982 CGCCAGTGCATCACATCAGT 61.023 55.000 0.00 0.00 36.74 3.41
565 747 2.603473 CGGGTGGTCTGGTCCTGA 60.603 66.667 0.00 0.00 0.00 3.86
575 757 2.804527 GTCTGGTCCTGACGTAAAAACC 59.195 50.000 12.62 0.00 0.00 3.27
576 758 1.796459 CTGGTCCTGACGTAAAAACCG 59.204 52.381 0.00 0.00 0.00 4.44
577 759 1.150827 GGTCCTGACGTAAAAACCGG 58.849 55.000 0.00 0.00 0.00 5.28
647 851 1.344438 TCATGCCACTCGTCTGAACTT 59.656 47.619 0.00 0.00 0.00 2.66
661 865 2.481952 CTGAACTTTTGAAGAGAGGCCG 59.518 50.000 0.00 0.00 0.00 6.13
1442 1754 6.068010 CCTAGAATCCTAGTGTCTGATCTGT 58.932 44.000 0.00 0.00 40.57 3.41
1475 1790 9.303537 GGTGTAGAGATGTGTTAGTTTCTTATC 57.696 37.037 0.00 0.00 0.00 1.75
1513 1828 3.421844 AGTAAGGTTCCTTGATGGTTGC 58.578 45.455 13.64 0.00 37.07 4.17
1525 1840 1.132262 GATGGTTGCGTTATGGTGTGG 59.868 52.381 0.00 0.00 0.00 4.17
1583 1938 8.671921 TCAATGAGAAGTTAGCAATCTGATTTC 58.328 33.333 0.00 0.00 26.76 2.17
1624 1997 6.213677 TCGTCTGGTTTATCGATGGATTTAG 58.786 40.000 8.54 0.00 34.00 1.85
1683 2058 4.860907 GCCACTGAATTTGATGAACATGAC 59.139 41.667 0.00 0.00 0.00 3.06
1685 2060 4.556135 CACTGAATTTGATGAACATGACGC 59.444 41.667 0.00 0.00 0.00 5.19
1746 2157 6.594159 CACCTTGTATAATTCGAGTCCTGTTT 59.406 38.462 0.00 0.00 0.00 2.83
1804 2215 9.672673 TTCCCTTCTAATCTTTACTCTCAATTG 57.327 33.333 0.00 0.00 0.00 2.32
1846 2258 4.018050 AGTGGATTGGATAACTGCCTCTTT 60.018 41.667 0.00 0.00 0.00 2.52
1847 2259 5.191722 AGTGGATTGGATAACTGCCTCTTTA 59.808 40.000 0.00 0.00 0.00 1.85
1848 2260 5.529060 GTGGATTGGATAACTGCCTCTTTAG 59.471 44.000 0.00 0.00 0.00 1.85
1849 2261 4.517075 GGATTGGATAACTGCCTCTTTAGC 59.483 45.833 0.00 0.00 0.00 3.09
1911 2392 6.228258 GGATCTGTACTCTTTTTGGTGTGTA 58.772 40.000 0.00 0.00 0.00 2.90
1912 2393 6.879458 GGATCTGTACTCTTTTTGGTGTGTAT 59.121 38.462 0.00 0.00 0.00 2.29
1913 2394 7.064728 GGATCTGTACTCTTTTTGGTGTGTATC 59.935 40.741 0.00 0.00 0.00 2.24
1914 2395 6.228258 TCTGTACTCTTTTTGGTGTGTATCC 58.772 40.000 0.00 0.00 0.00 2.59
1915 2396 5.931294 TGTACTCTTTTTGGTGTGTATCCA 58.069 37.500 0.00 0.00 0.00 3.41
1916 2397 6.539173 TGTACTCTTTTTGGTGTGTATCCAT 58.461 36.000 0.00 0.00 34.75 3.41
1917 2398 5.964958 ACTCTTTTTGGTGTGTATCCATG 57.035 39.130 0.00 0.00 34.75 3.66
1918 2399 4.766891 ACTCTTTTTGGTGTGTATCCATGG 59.233 41.667 4.97 4.97 34.75 3.66
1919 2400 4.991776 TCTTTTTGGTGTGTATCCATGGA 58.008 39.130 18.88 18.88 34.75 3.41
1920 2401 5.389520 TCTTTTTGGTGTGTATCCATGGAA 58.610 37.500 20.67 5.49 34.75 3.53
1921 2402 5.476599 TCTTTTTGGTGTGTATCCATGGAAG 59.523 40.000 20.67 6.72 34.75 3.46
1922 2403 2.418368 TGGTGTGTATCCATGGAAGC 57.582 50.000 20.67 14.82 0.00 3.86
1923 2404 1.915489 TGGTGTGTATCCATGGAAGCT 59.085 47.619 20.67 4.84 0.00 3.74
1924 2405 2.092968 TGGTGTGTATCCATGGAAGCTC 60.093 50.000 20.67 14.97 0.00 4.09
1925 2406 2.171448 GGTGTGTATCCATGGAAGCTCT 59.829 50.000 20.67 3.98 0.00 4.09
1926 2407 3.370953 GGTGTGTATCCATGGAAGCTCTT 60.371 47.826 20.67 3.13 0.00 2.85
1927 2408 4.265073 GTGTGTATCCATGGAAGCTCTTT 58.735 43.478 20.67 2.29 0.00 2.52
1928 2409 4.095483 GTGTGTATCCATGGAAGCTCTTTG 59.905 45.833 20.67 0.00 0.00 2.77
1929 2410 4.263462 TGTGTATCCATGGAAGCTCTTTGT 60.263 41.667 20.67 0.61 0.00 2.83
1930 2411 4.333926 GTGTATCCATGGAAGCTCTTTGTC 59.666 45.833 20.67 0.00 0.00 3.18
1931 2412 2.099141 TCCATGGAAGCTCTTTGTCG 57.901 50.000 13.46 0.00 0.00 4.35
1932 2413 1.623311 TCCATGGAAGCTCTTTGTCGA 59.377 47.619 13.46 0.00 0.00 4.20
1933 2414 2.038426 TCCATGGAAGCTCTTTGTCGAA 59.962 45.455 13.46 0.00 0.00 3.71
1934 2415 2.813754 CCATGGAAGCTCTTTGTCGAAA 59.186 45.455 5.56 0.00 0.00 3.46
1935 2416 3.253188 CCATGGAAGCTCTTTGTCGAAAA 59.747 43.478 5.56 0.00 0.00 2.29
1936 2417 4.261572 CCATGGAAGCTCTTTGTCGAAAAA 60.262 41.667 5.56 0.00 0.00 1.94
1963 2447 2.945008 TGGAAGCTATGAAATTCTGGCG 59.055 45.455 0.00 0.00 0.00 5.69
1978 2468 2.028748 TCTGGCGGTTCTAAGTGTAACC 60.029 50.000 0.00 0.00 41.48 2.85
2048 2548 3.541242 TTGGACTCCAAATGGAATGGT 57.459 42.857 8.15 0.00 44.91 3.55
2071 2571 6.818644 GGTAAATATCTGCACTCTGTTGAAGA 59.181 38.462 0.00 0.00 0.00 2.87
2076 2576 6.981762 ATCTGCACTCTGTTGAAGAATTAG 57.018 37.500 0.00 0.00 33.37 1.73
2143 2644 7.594351 ATCTGAGATAGCTGAATCAGTGTAA 57.406 36.000 12.29 5.22 40.07 2.41
2167 2668 5.895636 TGTGTCTTGTAATAGGCATTTGG 57.104 39.130 0.00 0.00 31.49 3.28
2262 2774 1.682854 CTGCACCAAATTGTGTCCAGT 59.317 47.619 0.00 0.00 38.52 4.00
2307 2819 3.769300 TCTCAGGTTAGCTGCATCACTTA 59.231 43.478 6.54 0.00 0.00 2.24
2308 2820 4.118410 CTCAGGTTAGCTGCATCACTTAG 58.882 47.826 6.54 0.00 0.00 2.18
2309 2821 2.611292 CAGGTTAGCTGCATCACTTAGC 59.389 50.000 1.02 0.00 37.71 3.09
2310 2822 2.237143 AGGTTAGCTGCATCACTTAGCA 59.763 45.455 1.02 0.00 39.84 3.49
2312 2824 3.629398 GGTTAGCTGCATCACTTAGCAAT 59.371 43.478 1.02 0.00 40.73 3.56
2313 2825 4.497006 GGTTAGCTGCATCACTTAGCAATG 60.497 45.833 1.02 0.00 40.73 2.82
2314 2826 2.719739 AGCTGCATCACTTAGCAATGT 58.280 42.857 1.02 0.00 40.73 2.71
2315 2827 3.087031 AGCTGCATCACTTAGCAATGTT 58.913 40.909 1.02 0.00 40.73 2.71
2357 2890 3.072915 TCATCCACCAGGCCATTAGTATG 59.927 47.826 5.01 1.91 33.74 2.39
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.104120 TAGTGGTCATCCGCATTCCG 59.896 55.000 0.78 0.00 45.81 4.30
1 2 1.139058 AGTAGTGGTCATCCGCATTCC 59.861 52.381 0.78 0.00 45.81 3.01
2 3 2.604046 AGTAGTGGTCATCCGCATTC 57.396 50.000 0.78 0.00 45.81 2.67
3 4 2.738643 CGAAGTAGTGGTCATCCGCATT 60.739 50.000 0.78 0.00 45.81 3.56
4 5 1.202417 CGAAGTAGTGGTCATCCGCAT 60.202 52.381 0.78 0.00 45.81 4.73
5 6 0.172578 CGAAGTAGTGGTCATCCGCA 59.827 55.000 0.78 0.00 45.81 5.69
6 7 0.454600 TCGAAGTAGTGGTCATCCGC 59.545 55.000 0.00 0.00 43.92 5.54
7 8 1.531264 CGTCGAAGTAGTGGTCATCCG 60.531 57.143 0.00 0.00 36.30 4.18
8 9 1.741706 TCGTCGAAGTAGTGGTCATCC 59.258 52.381 0.00 0.00 0.00 3.51
9 10 2.783333 GTCGTCGAAGTAGTGGTCATC 58.217 52.381 0.00 0.00 0.00 2.92
10 11 1.129998 CGTCGTCGAAGTAGTGGTCAT 59.870 52.381 0.00 0.00 39.71 3.06
11 12 0.514255 CGTCGTCGAAGTAGTGGTCA 59.486 55.000 0.00 0.00 39.71 4.02
12 13 0.792640 TCGTCGTCGAAGTAGTGGTC 59.207 55.000 1.37 0.00 43.34 4.02
13 14 0.795085 CTCGTCGTCGAAGTAGTGGT 59.205 55.000 6.19 0.00 45.61 4.16
14 15 0.096628 CCTCGTCGTCGAAGTAGTGG 59.903 60.000 6.19 0.00 45.61 4.00
15 16 1.073964 TCCTCGTCGTCGAAGTAGTG 58.926 55.000 6.19 0.00 45.61 2.74
16 17 1.074752 GTCCTCGTCGTCGAAGTAGT 58.925 55.000 6.19 0.00 45.61 2.73
17 18 1.060842 CTGTCCTCGTCGTCGAAGTAG 59.939 57.143 6.19 4.76 45.61 2.57
18 19 1.073964 CTGTCCTCGTCGTCGAAGTA 58.926 55.000 6.19 0.00 45.61 2.24
19 20 0.602106 TCTGTCCTCGTCGTCGAAGT 60.602 55.000 6.19 0.00 45.61 3.01
20 21 0.516001 TTCTGTCCTCGTCGTCGAAG 59.484 55.000 6.19 0.00 45.61 3.79
21 22 0.516001 CTTCTGTCCTCGTCGTCGAA 59.484 55.000 6.19 0.00 45.61 3.71
22 23 1.296755 CCTTCTGTCCTCGTCGTCGA 61.297 60.000 4.42 4.42 44.12 4.20
23 24 1.134901 CCTTCTGTCCTCGTCGTCG 59.865 63.158 0.00 0.00 38.55 5.12
24 25 1.153997 GCCTTCTGTCCTCGTCGTC 60.154 63.158 0.00 0.00 0.00 4.20
25 26 1.867919 CTGCCTTCTGTCCTCGTCGT 61.868 60.000 0.00 0.00 0.00 4.34
26 27 1.153939 CTGCCTTCTGTCCTCGTCG 60.154 63.158 0.00 0.00 0.00 5.12
27 28 0.820871 ATCTGCCTTCTGTCCTCGTC 59.179 55.000 0.00 0.00 0.00 4.20
28 29 0.820871 GATCTGCCTTCTGTCCTCGT 59.179 55.000 0.00 0.00 0.00 4.18
29 30 0.820226 TGATCTGCCTTCTGTCCTCG 59.180 55.000 0.00 0.00 0.00 4.63
30 31 1.138661 CCTGATCTGCCTTCTGTCCTC 59.861 57.143 0.00 0.00 0.00 3.71
31 32 1.202330 CCTGATCTGCCTTCTGTCCT 58.798 55.000 0.00 0.00 0.00 3.85
32 33 0.179936 CCCTGATCTGCCTTCTGTCC 59.820 60.000 0.00 0.00 0.00 4.02
33 34 0.908198 ACCCTGATCTGCCTTCTGTC 59.092 55.000 0.00 0.00 0.00 3.51
34 35 1.004044 CAACCCTGATCTGCCTTCTGT 59.996 52.381 0.00 0.00 0.00 3.41
35 36 1.004044 ACAACCCTGATCTGCCTTCTG 59.996 52.381 0.00 0.00 0.00 3.02
36 37 1.366319 ACAACCCTGATCTGCCTTCT 58.634 50.000 0.00 0.00 0.00 2.85
37 38 2.206576 AACAACCCTGATCTGCCTTC 57.793 50.000 0.00 0.00 0.00 3.46
38 39 2.290960 GGTAACAACCCTGATCTGCCTT 60.291 50.000 0.00 0.00 0.00 4.35
39 40 1.282157 GGTAACAACCCTGATCTGCCT 59.718 52.381 0.00 0.00 0.00 4.75
40 41 1.751437 GGTAACAACCCTGATCTGCC 58.249 55.000 0.00 0.00 0.00 4.85
41 42 1.066430 TCGGTAACAACCCTGATCTGC 60.066 52.381 0.00 0.00 0.00 4.26
42 43 3.262420 CTTCGGTAACAACCCTGATCTG 58.738 50.000 0.00 0.00 0.00 2.90
43 44 2.354805 GCTTCGGTAACAACCCTGATCT 60.355 50.000 0.00 0.00 0.00 2.75
44 45 2.007608 GCTTCGGTAACAACCCTGATC 58.992 52.381 0.00 0.00 0.00 2.92
45 46 1.349688 TGCTTCGGTAACAACCCTGAT 59.650 47.619 0.00 0.00 0.00 2.90
46 47 0.759959 TGCTTCGGTAACAACCCTGA 59.240 50.000 0.00 0.00 0.00 3.86
47 48 1.535462 CTTGCTTCGGTAACAACCCTG 59.465 52.381 0.00 0.00 0.00 4.45
48 49 1.892209 CTTGCTTCGGTAACAACCCT 58.108 50.000 0.00 0.00 0.00 4.34
49 50 0.240145 GCTTGCTTCGGTAACAACCC 59.760 55.000 0.00 0.00 0.00 4.11
50 51 0.240145 GGCTTGCTTCGGTAACAACC 59.760 55.000 0.00 0.00 0.00 3.77
51 52 1.197036 GAGGCTTGCTTCGGTAACAAC 59.803 52.381 0.00 0.00 0.00 3.32
52 53 1.071699 AGAGGCTTGCTTCGGTAACAA 59.928 47.619 0.00 0.00 0.00 2.83
53 54 0.685097 AGAGGCTTGCTTCGGTAACA 59.315 50.000 0.00 0.00 0.00 2.41
54 55 1.809684 AAGAGGCTTGCTTCGGTAAC 58.190 50.000 0.00 0.00 0.00 2.50
55 56 2.561478 AAAGAGGCTTGCTTCGGTAA 57.439 45.000 0.00 0.00 0.00 2.85
56 57 3.688694 TTAAAGAGGCTTGCTTCGGTA 57.311 42.857 0.00 0.00 0.00 4.02
57 58 2.561478 TTAAAGAGGCTTGCTTCGGT 57.439 45.000 0.00 0.00 0.00 4.69
58 59 4.168760 CAATTTAAAGAGGCTTGCTTCGG 58.831 43.478 0.00 0.00 0.00 4.30
59 60 4.798574 ACAATTTAAAGAGGCTTGCTTCG 58.201 39.130 0.00 0.00 0.00 3.79
60 61 5.772521 TGACAATTTAAAGAGGCTTGCTTC 58.227 37.500 0.00 0.00 0.00 3.86
61 62 5.789643 TGACAATTTAAAGAGGCTTGCTT 57.210 34.783 0.00 0.00 0.00 3.91
62 63 5.302823 ACTTGACAATTTAAAGAGGCTTGCT 59.697 36.000 0.00 0.00 0.00 3.91
63 64 5.532557 ACTTGACAATTTAAAGAGGCTTGC 58.467 37.500 0.00 0.00 0.00 4.01
64 65 6.360681 CGAACTTGACAATTTAAAGAGGCTTG 59.639 38.462 0.00 0.00 0.00 4.01
65 66 6.438763 CGAACTTGACAATTTAAAGAGGCTT 58.561 36.000 0.00 0.00 0.00 4.35
66 67 5.048713 CCGAACTTGACAATTTAAAGAGGCT 60.049 40.000 0.00 0.00 0.00 4.58
67 68 5.154222 CCGAACTTGACAATTTAAAGAGGC 58.846 41.667 0.00 0.00 0.00 4.70
68 69 5.154222 GCCGAACTTGACAATTTAAAGAGG 58.846 41.667 0.00 0.00 0.00 3.69
69 70 5.154222 GGCCGAACTTGACAATTTAAAGAG 58.846 41.667 0.00 0.00 0.00 2.85
70 71 4.580995 TGGCCGAACTTGACAATTTAAAGA 59.419 37.500 0.00 0.00 0.00 2.52
71 72 4.865776 TGGCCGAACTTGACAATTTAAAG 58.134 39.130 0.00 0.00 0.00 1.85
72 73 4.339814 ACTGGCCGAACTTGACAATTTAAA 59.660 37.500 0.00 0.00 0.00 1.52
73 74 3.886505 ACTGGCCGAACTTGACAATTTAA 59.113 39.130 0.00 0.00 0.00 1.52
74 75 3.482436 ACTGGCCGAACTTGACAATTTA 58.518 40.909 0.00 0.00 0.00 1.40
75 76 2.293399 GACTGGCCGAACTTGACAATTT 59.707 45.455 0.00 0.00 0.00 1.82
76 77 1.880027 GACTGGCCGAACTTGACAATT 59.120 47.619 0.00 0.00 0.00 2.32
77 78 1.202758 TGACTGGCCGAACTTGACAAT 60.203 47.619 0.00 0.00 0.00 2.71
78 79 0.179234 TGACTGGCCGAACTTGACAA 59.821 50.000 0.00 0.00 0.00 3.18
79 80 0.531974 GTGACTGGCCGAACTTGACA 60.532 55.000 0.00 0.00 0.00 3.58
80 81 0.249911 AGTGACTGGCCGAACTTGAC 60.250 55.000 0.00 0.00 0.00 3.18
81 82 0.249868 CAGTGACTGGCCGAACTTGA 60.250 55.000 4.28 0.00 0.00 3.02
82 83 0.532862 ACAGTGACTGGCCGAACTTG 60.533 55.000 17.92 0.00 35.51 3.16
83 84 0.249911 GACAGTGACTGGCCGAACTT 60.250 55.000 17.92 0.00 32.43 2.66
84 85 1.367840 GACAGTGACTGGCCGAACT 59.632 57.895 17.92 0.00 32.43 3.01
85 86 3.952811 GACAGTGACTGGCCGAAC 58.047 61.111 17.92 0.00 32.43 3.95
90 91 2.191128 AGAAATGGACAGTGACTGGC 57.809 50.000 17.92 14.63 39.10 4.85
91 92 2.227388 GCAAGAAATGGACAGTGACTGG 59.773 50.000 17.92 0.00 35.51 4.00
92 93 3.144506 AGCAAGAAATGGACAGTGACTG 58.855 45.455 11.70 11.70 37.52 3.51
93 94 3.498774 AGCAAGAAATGGACAGTGACT 57.501 42.857 0.00 0.00 0.00 3.41
94 95 4.569943 TCTAGCAAGAAATGGACAGTGAC 58.430 43.478 0.00 0.00 0.00 3.67
95 96 4.890158 TCTAGCAAGAAATGGACAGTGA 57.110 40.909 0.00 0.00 0.00 3.41
96 97 4.142730 GCTTCTAGCAAGAAATGGACAGTG 60.143 45.833 6.23 0.00 41.19 3.66
97 98 4.006319 GCTTCTAGCAAGAAATGGACAGT 58.994 43.478 6.23 0.00 41.19 3.55
98 99 4.094590 CAGCTTCTAGCAAGAAATGGACAG 59.905 45.833 1.09 0.00 45.56 3.51
99 100 4.005650 CAGCTTCTAGCAAGAAATGGACA 58.994 43.478 1.09 0.00 45.56 4.02
100 101 3.376546 CCAGCTTCTAGCAAGAAATGGAC 59.623 47.826 11.12 0.00 44.34 4.02
101 102 3.009473 ACCAGCTTCTAGCAAGAAATGGA 59.991 43.478 18.72 0.00 44.34 3.41
102 103 3.350833 ACCAGCTTCTAGCAAGAAATGG 58.649 45.455 13.53 13.53 45.56 3.16
103 104 5.645497 AGTAACCAGCTTCTAGCAAGAAATG 59.355 40.000 1.09 0.00 45.56 2.32
104 105 5.645497 CAGTAACCAGCTTCTAGCAAGAAAT 59.355 40.000 1.09 0.00 45.56 2.17
105 106 4.997395 CAGTAACCAGCTTCTAGCAAGAAA 59.003 41.667 1.09 0.00 45.56 2.52
106 107 4.040461 ACAGTAACCAGCTTCTAGCAAGAA 59.960 41.667 1.09 0.00 45.56 2.52
107 108 3.578716 ACAGTAACCAGCTTCTAGCAAGA 59.421 43.478 1.09 0.00 45.56 3.02
108 109 3.931578 ACAGTAACCAGCTTCTAGCAAG 58.068 45.455 1.09 0.00 45.56 4.01
109 110 4.202315 TGAACAGTAACCAGCTTCTAGCAA 60.202 41.667 1.09 0.00 45.56 3.91
110 111 3.323691 TGAACAGTAACCAGCTTCTAGCA 59.676 43.478 1.09 0.00 45.56 3.49
111 112 3.926616 TGAACAGTAACCAGCTTCTAGC 58.073 45.455 0.00 0.00 42.84 3.42
112 113 5.992217 ACTTTGAACAGTAACCAGCTTCTAG 59.008 40.000 0.00 0.00 0.00 2.43
113 114 5.758296 CACTTTGAACAGTAACCAGCTTCTA 59.242 40.000 0.00 0.00 0.00 2.10
114 115 4.576463 CACTTTGAACAGTAACCAGCTTCT 59.424 41.667 0.00 0.00 0.00 2.85
115 116 4.261197 CCACTTTGAACAGTAACCAGCTTC 60.261 45.833 0.00 0.00 0.00 3.86
116 117 3.632145 CCACTTTGAACAGTAACCAGCTT 59.368 43.478 0.00 0.00 0.00 3.74
117 118 3.214328 CCACTTTGAACAGTAACCAGCT 58.786 45.455 0.00 0.00 0.00 4.24
118 119 2.949644 ACCACTTTGAACAGTAACCAGC 59.050 45.455 0.00 0.00 0.00 4.85
119 120 4.196193 TCACCACTTTGAACAGTAACCAG 58.804 43.478 0.00 0.00 0.00 4.00
120 121 4.223556 TCACCACTTTGAACAGTAACCA 57.776 40.909 0.00 0.00 0.00 3.67
121 122 5.049405 CAGATCACCACTTTGAACAGTAACC 60.049 44.000 0.00 0.00 0.00 2.85
122 123 5.049405 CCAGATCACCACTTTGAACAGTAAC 60.049 44.000 0.00 0.00 0.00 2.50
123 124 5.063204 CCAGATCACCACTTTGAACAGTAA 58.937 41.667 0.00 0.00 0.00 2.24
124 125 4.346709 TCCAGATCACCACTTTGAACAGTA 59.653 41.667 0.00 0.00 0.00 2.74
125 126 3.136443 TCCAGATCACCACTTTGAACAGT 59.864 43.478 0.00 0.00 0.00 3.55
126 127 3.499918 GTCCAGATCACCACTTTGAACAG 59.500 47.826 0.00 0.00 0.00 3.16
127 128 3.136443 AGTCCAGATCACCACTTTGAACA 59.864 43.478 0.00 0.00 0.00 3.18
128 129 3.744660 AGTCCAGATCACCACTTTGAAC 58.255 45.455 0.00 0.00 0.00 3.18
129 130 3.648067 AGAGTCCAGATCACCACTTTGAA 59.352 43.478 0.00 0.00 0.00 2.69
130 131 3.242867 AGAGTCCAGATCACCACTTTGA 58.757 45.455 0.00 0.00 0.00 2.69
131 132 3.007290 TGAGAGTCCAGATCACCACTTTG 59.993 47.826 0.00 0.00 0.00 2.77
132 133 3.242867 TGAGAGTCCAGATCACCACTTT 58.757 45.455 0.00 0.00 0.00 2.66
133 134 2.894731 TGAGAGTCCAGATCACCACTT 58.105 47.619 0.00 0.00 0.00 3.16
134 135 2.612285 TGAGAGTCCAGATCACCACT 57.388 50.000 0.00 0.00 0.00 4.00
135 136 3.902881 AATGAGAGTCCAGATCACCAC 57.097 47.619 0.00 0.00 0.00 4.16
136 137 4.916041 AAAATGAGAGTCCAGATCACCA 57.084 40.909 0.00 0.00 0.00 4.17
137 138 6.238593 GCATAAAAATGAGAGTCCAGATCACC 60.239 42.308 0.00 0.00 0.00 4.02
138 139 6.317140 TGCATAAAAATGAGAGTCCAGATCAC 59.683 38.462 0.00 0.00 0.00 3.06
139 140 6.317140 GTGCATAAAAATGAGAGTCCAGATCA 59.683 38.462 0.00 0.00 0.00 2.92
140 141 6.238593 GGTGCATAAAAATGAGAGTCCAGATC 60.239 42.308 0.00 0.00 0.00 2.75
141 142 5.591877 GGTGCATAAAAATGAGAGTCCAGAT 59.408 40.000 0.00 0.00 0.00 2.90
142 143 4.943705 GGTGCATAAAAATGAGAGTCCAGA 59.056 41.667 0.00 0.00 0.00 3.86
143 144 4.201851 CGGTGCATAAAAATGAGAGTCCAG 60.202 45.833 0.00 0.00 0.00 3.86
144 145 3.689161 CGGTGCATAAAAATGAGAGTCCA 59.311 43.478 0.00 0.00 0.00 4.02
145 146 3.689649 ACGGTGCATAAAAATGAGAGTCC 59.310 43.478 0.00 0.00 0.00 3.85
146 147 4.946784 ACGGTGCATAAAAATGAGAGTC 57.053 40.909 0.00 0.00 0.00 3.36
147 148 4.082787 CCAACGGTGCATAAAAATGAGAGT 60.083 41.667 0.00 0.00 0.00 3.24
148 149 4.082787 ACCAACGGTGCATAAAAATGAGAG 60.083 41.667 0.00 0.00 32.98 3.20
149 150 3.823873 ACCAACGGTGCATAAAAATGAGA 59.176 39.130 0.00 0.00 32.98 3.27
150 151 4.173036 ACCAACGGTGCATAAAAATGAG 57.827 40.909 0.00 0.00 32.98 2.90
163 164 5.452255 TCCTATAGTAGATTCACCAACGGT 58.548 41.667 0.00 0.00 35.62 4.83
164 165 5.565045 GCTCCTATAGTAGATTCACCAACGG 60.565 48.000 0.00 0.00 0.00 4.44
165 166 5.462405 GCTCCTATAGTAGATTCACCAACG 58.538 45.833 0.00 0.00 0.00 4.10
166 167 5.462405 CGCTCCTATAGTAGATTCACCAAC 58.538 45.833 0.00 0.00 0.00 3.77
167 168 4.523173 CCGCTCCTATAGTAGATTCACCAA 59.477 45.833 0.00 0.00 0.00 3.67
168 169 4.079970 CCGCTCCTATAGTAGATTCACCA 58.920 47.826 0.00 0.00 0.00 4.17
169 170 4.080687 ACCGCTCCTATAGTAGATTCACC 58.919 47.826 0.00 0.00 0.00 4.02
170 171 5.005094 AGACCGCTCCTATAGTAGATTCAC 58.995 45.833 0.00 0.00 0.00 3.18
171 172 5.004448 CAGACCGCTCCTATAGTAGATTCA 58.996 45.833 0.00 0.00 0.00 2.57
172 173 4.142556 GCAGACCGCTCCTATAGTAGATTC 60.143 50.000 0.00 0.00 37.77 2.52
173 174 3.759618 GCAGACCGCTCCTATAGTAGATT 59.240 47.826 0.00 0.00 37.77 2.40
174 175 3.349022 GCAGACCGCTCCTATAGTAGAT 58.651 50.000 0.00 0.00 37.77 1.98
175 176 2.780714 GCAGACCGCTCCTATAGTAGA 58.219 52.381 0.00 0.00 37.77 2.59
187 188 0.602905 AACTACAACCAGCAGACCGC 60.603 55.000 0.00 0.00 42.91 5.68
188 189 1.148310 CAACTACAACCAGCAGACCG 58.852 55.000 0.00 0.00 0.00 4.79
189 190 0.875059 GCAACTACAACCAGCAGACC 59.125 55.000 0.00 0.00 0.00 3.85
190 191 1.532868 CAGCAACTACAACCAGCAGAC 59.467 52.381 0.00 0.00 0.00 3.51
191 192 1.416030 TCAGCAACTACAACCAGCAGA 59.584 47.619 0.00 0.00 0.00 4.26
192 193 1.532868 GTCAGCAACTACAACCAGCAG 59.467 52.381 0.00 0.00 0.00 4.24
193 194 1.140852 AGTCAGCAACTACAACCAGCA 59.859 47.619 0.00 0.00 36.07 4.41
194 195 1.884235 AGTCAGCAACTACAACCAGC 58.116 50.000 0.00 0.00 36.07 4.85
195 196 2.549754 CCAAGTCAGCAACTACAACCAG 59.450 50.000 0.00 0.00 37.17 4.00
196 197 2.571212 CCAAGTCAGCAACTACAACCA 58.429 47.619 0.00 0.00 37.17 3.67
197 198 1.266989 GCCAAGTCAGCAACTACAACC 59.733 52.381 0.00 0.00 37.17 3.77
198 199 1.069906 CGCCAAGTCAGCAACTACAAC 60.070 52.381 0.00 0.00 37.17 3.32
199 200 1.225855 CGCCAAGTCAGCAACTACAA 58.774 50.000 0.00 0.00 37.17 2.41
200 201 0.105964 ACGCCAAGTCAGCAACTACA 59.894 50.000 0.00 0.00 37.17 2.74
201 202 0.512952 CACGCCAAGTCAGCAACTAC 59.487 55.000 0.00 0.00 37.17 2.73
202 203 1.227999 GCACGCCAAGTCAGCAACTA 61.228 55.000 0.00 0.00 37.17 2.24
203 204 2.546494 GCACGCCAAGTCAGCAACT 61.546 57.895 0.00 0.00 41.10 3.16
204 205 2.050985 GCACGCCAAGTCAGCAAC 60.051 61.111 0.00 0.00 0.00 4.17
205 206 3.286751 GGCACGCCAAGTCAGCAA 61.287 61.111 2.36 0.00 35.81 3.91
206 207 4.560743 TGGCACGCCAAGTCAGCA 62.561 61.111 8.67 0.00 44.12 4.41
207 208 3.730761 CTGGCACGCCAAGTCAGC 61.731 66.667 12.67 0.00 46.63 4.26
208 209 0.391661 ATACTGGCACGCCAAGTCAG 60.392 55.000 12.67 2.40 46.63 3.51
209 210 0.391130 GATACTGGCACGCCAAGTCA 60.391 55.000 12.67 0.00 46.63 3.41
210 211 0.391130 TGATACTGGCACGCCAAGTC 60.391 55.000 12.67 10.48 46.63 3.01
211 212 0.253044 ATGATACTGGCACGCCAAGT 59.747 50.000 12.67 13.89 46.63 3.16
212 213 0.659427 CATGATACTGGCACGCCAAG 59.341 55.000 12.67 8.84 46.63 3.61
217 218 0.177836 TGGTCCATGATACTGGCACG 59.822 55.000 0.00 0.00 36.16 5.34
281 282 7.225931 TCCTTCAGTTAAGTACACACATTTCAC 59.774 37.037 0.00 0.00 32.89 3.18
290 291 8.837389 AGTTTCAATTCCTTCAGTTAAGTACAC 58.163 33.333 0.00 0.00 32.89 2.90
299 300 6.299141 TGCTAGAAGTTTCAATTCCTTCAGT 58.701 36.000 0.00 0.00 37.62 3.41
300 301 6.622462 GCTGCTAGAAGTTTCAATTCCTTCAG 60.622 42.308 0.00 0.00 37.62 3.02
309 310 2.543777 ACGGCTGCTAGAAGTTTCAA 57.456 45.000 0.00 0.00 0.00 2.69
310 311 2.143122 CAACGGCTGCTAGAAGTTTCA 58.857 47.619 0.00 0.00 0.00 2.69
318 319 0.238289 CAAACACCAACGGCTGCTAG 59.762 55.000 0.00 0.00 0.00 3.42
320 321 3.119193 CAAACACCAACGGCTGCT 58.881 55.556 0.00 0.00 0.00 4.24
322 323 2.027460 GGCAAACACCAACGGCTG 59.973 61.111 0.00 0.00 0.00 4.85
324 325 2.027460 CAGGCAAACACCAACGGC 59.973 61.111 0.00 0.00 0.00 5.68
325 326 0.248866 GAACAGGCAAACACCAACGG 60.249 55.000 0.00 0.00 0.00 4.44
326 327 0.738389 AGAACAGGCAAACACCAACG 59.262 50.000 0.00 0.00 0.00 4.10
328 329 1.953686 GCTAGAACAGGCAAACACCAA 59.046 47.619 0.00 0.00 0.00 3.67
329 330 1.133945 TGCTAGAACAGGCAAACACCA 60.134 47.619 0.00 0.00 35.40 4.17
330 331 1.537202 CTGCTAGAACAGGCAAACACC 59.463 52.381 0.00 0.00 38.02 4.16
331 332 2.222027 ACTGCTAGAACAGGCAAACAC 58.778 47.619 0.00 0.00 42.21 3.32
337 338 0.898320 TCCAGACTGCTAGAACAGGC 59.102 55.000 0.00 0.00 46.81 4.85
338 339 2.175202 ACTCCAGACTGCTAGAACAGG 58.825 52.381 9.36 0.00 42.21 4.00
341 342 5.394224 AAAGTACTCCAGACTGCTAGAAC 57.606 43.478 0.00 0.00 0.00 3.01
342 343 7.719871 ATAAAAGTACTCCAGACTGCTAGAA 57.280 36.000 0.00 0.00 0.00 2.10
343 344 7.719871 AATAAAAGTACTCCAGACTGCTAGA 57.280 36.000 0.00 0.00 0.00 2.43
344 345 9.871238 TTAAATAAAAGTACTCCAGACTGCTAG 57.129 33.333 0.00 0.00 0.00 3.42
345 346 9.871238 CTTAAATAAAAGTACTCCAGACTGCTA 57.129 33.333 0.00 0.00 0.00 3.49
346 347 8.594550 TCTTAAATAAAAGTACTCCAGACTGCT 58.405 33.333 0.00 0.00 0.00 4.24
348 349 9.372369 CCTCTTAAATAAAAGTACTCCAGACTG 57.628 37.037 0.00 0.00 0.00 3.51
349 350 8.541234 CCCTCTTAAATAAAAGTACTCCAGACT 58.459 37.037 0.00 0.00 0.00 3.24
350 351 7.280428 GCCCTCTTAAATAAAAGTACTCCAGAC 59.720 40.741 0.00 0.00 0.00 3.51
351 352 7.037873 TGCCCTCTTAAATAAAAGTACTCCAGA 60.038 37.037 0.00 0.00 0.00 3.86
352 353 7.110155 TGCCCTCTTAAATAAAAGTACTCCAG 58.890 38.462 0.00 0.00 0.00 3.86
353 354 7.023171 TGCCCTCTTAAATAAAAGTACTCCA 57.977 36.000 0.00 0.00 0.00 3.86
354 355 7.827729 TCTTGCCCTCTTAAATAAAAGTACTCC 59.172 37.037 0.00 0.00 0.00 3.85
355 356 8.788325 TCTTGCCCTCTTAAATAAAAGTACTC 57.212 34.615 0.00 0.00 0.00 2.59
356 357 7.337184 GCTCTTGCCCTCTTAAATAAAAGTACT 59.663 37.037 0.00 0.00 0.00 2.73
360 361 6.515272 TGCTCTTGCCCTCTTAAATAAAAG 57.485 37.500 0.00 0.00 38.71 2.27
361 362 6.127366 CCATGCTCTTGCCCTCTTAAATAAAA 60.127 38.462 0.00 0.00 38.71 1.52
363 364 4.889409 CCATGCTCTTGCCCTCTTAAATAA 59.111 41.667 0.00 0.00 38.71 1.40
365 366 3.294214 CCATGCTCTTGCCCTCTTAAAT 58.706 45.455 0.00 0.00 38.71 1.40
370 371 2.274760 GCCATGCTCTTGCCCTCT 59.725 61.111 0.00 0.00 38.71 3.69
371 372 2.832201 GGCCATGCTCTTGCCCTC 60.832 66.667 0.00 0.00 39.30 4.30
372 373 2.927537 AAGGCCATGCTCTTGCCCT 61.928 57.895 5.01 0.00 46.55 5.19
373 374 2.363406 AAGGCCATGCTCTTGCCC 60.363 61.111 5.01 0.00 46.55 5.36
374 375 2.718073 CCAAGGCCATGCTCTTGCC 61.718 63.158 5.01 10.34 45.70 4.52
375 376 1.980772 ACCAAGGCCATGCTCTTGC 60.981 57.895 5.01 2.28 36.36 4.01
376 377 1.888018 CACCAAGGCCATGCTCTTG 59.112 57.895 5.01 15.20 36.94 3.02
377 378 1.980772 GCACCAAGGCCATGCTCTT 60.981 57.895 5.01 0.00 36.40 2.85
379 380 2.362120 AGCACCAAGGCCATGCTC 60.362 61.111 15.68 1.94 46.68 4.26
381 382 2.263540 CAAGCACCAAGGCCATGC 59.736 61.111 5.01 9.51 39.74 4.06
382 383 2.263540 GCAAGCACCAAGGCCATG 59.736 61.111 5.01 2.05 0.00 3.66
383 384 2.999063 GGCAAGCACCAAGGCCAT 60.999 61.111 5.01 0.00 45.70 4.40
385 386 3.688159 CAGGCAAGCACCAAGGCC 61.688 66.667 0.00 0.00 46.77 5.19
386 387 2.426122 GAACAGGCAAGCACCAAGGC 62.426 60.000 0.00 0.00 0.00 4.35
387 388 0.825010 AGAACAGGCAAGCACCAAGG 60.825 55.000 0.00 0.00 0.00 3.61
389 390 0.746063 CAAGAACAGGCAAGCACCAA 59.254 50.000 0.00 0.00 0.00 3.67
390 391 1.108727 CCAAGAACAGGCAAGCACCA 61.109 55.000 0.00 0.00 0.00 4.17
391 392 1.109323 ACCAAGAACAGGCAAGCACC 61.109 55.000 0.00 0.00 0.00 5.01
392 393 0.031178 CACCAAGAACAGGCAAGCAC 59.969 55.000 0.00 0.00 0.00 4.40
394 395 1.251251 ATCACCAAGAACAGGCAAGC 58.749 50.000 0.00 0.00 0.00 4.01
396 397 4.032960 ACATATCACCAAGAACAGGCAA 57.967 40.909 0.00 0.00 0.00 4.52
397 398 3.719268 ACATATCACCAAGAACAGGCA 57.281 42.857 0.00 0.00 0.00 4.75
398 399 4.095483 CAGAACATATCACCAAGAACAGGC 59.905 45.833 0.00 0.00 0.00 4.85
399 400 4.637534 CCAGAACATATCACCAAGAACAGG 59.362 45.833 0.00 0.00 0.00 4.00
400 401 4.095483 GCCAGAACATATCACCAAGAACAG 59.905 45.833 0.00 0.00 0.00 3.16
402 403 4.009675 TGCCAGAACATATCACCAAGAAC 58.990 43.478 0.00 0.00 0.00 3.01
404 405 3.998913 TGCCAGAACATATCACCAAGA 57.001 42.857 0.00 0.00 0.00 3.02
405 406 5.125356 TGTATGCCAGAACATATCACCAAG 58.875 41.667 0.00 0.00 35.11 3.61
406 407 5.109500 TGTATGCCAGAACATATCACCAA 57.891 39.130 0.00 0.00 35.11 3.67
407 408 4.769345 TGTATGCCAGAACATATCACCA 57.231 40.909 0.00 0.00 35.11 4.17
408 409 6.039717 ACAAATGTATGCCAGAACATATCACC 59.960 38.462 0.00 0.00 35.30 4.02
409 410 7.031226 ACAAATGTATGCCAGAACATATCAC 57.969 36.000 0.00 0.00 35.30 3.06
410 411 7.643569 AACAAATGTATGCCAGAACATATCA 57.356 32.000 0.00 0.00 35.30 2.15
411 412 8.931385 AAAACAAATGTATGCCAGAACATATC 57.069 30.769 0.00 0.00 35.30 1.63
414 415 6.996509 AGAAAACAAATGTATGCCAGAACAT 58.003 32.000 0.00 0.00 37.94 2.71
416 417 7.147976 AGAAGAAAACAAATGTATGCCAGAAC 58.852 34.615 0.00 0.00 0.00 3.01
417 418 7.288810 AGAAGAAAACAAATGTATGCCAGAA 57.711 32.000 0.00 0.00 0.00 3.02
418 419 6.899393 AGAAGAAAACAAATGTATGCCAGA 57.101 33.333 0.00 0.00 0.00 3.86
419 420 6.366877 CCAAGAAGAAAACAAATGTATGCCAG 59.633 38.462 0.00 0.00 0.00 4.85
420 421 6.183360 ACCAAGAAGAAAACAAATGTATGCCA 60.183 34.615 0.00 0.00 0.00 4.92
421 422 6.146021 CACCAAGAAGAAAACAAATGTATGCC 59.854 38.462 0.00 0.00 0.00 4.40
423 424 6.925165 AGCACCAAGAAGAAAACAAATGTATG 59.075 34.615 0.00 0.00 0.00 2.39
425 426 6.463995 AGCACCAAGAAGAAAACAAATGTA 57.536 33.333 0.00 0.00 0.00 2.29
427 428 5.581874 ACAAGCACCAAGAAGAAAACAAATG 59.418 36.000 0.00 0.00 0.00 2.32
428 429 5.581874 CACAAGCACCAAGAAGAAAACAAAT 59.418 36.000 0.00 0.00 0.00 2.32
429 430 4.928615 CACAAGCACCAAGAAGAAAACAAA 59.071 37.500 0.00 0.00 0.00 2.83
430 431 4.493547 CACAAGCACCAAGAAGAAAACAA 58.506 39.130 0.00 0.00 0.00 2.83
490 672 3.628032 CCTCAGTCGCTCACTTCTGTATA 59.372 47.826 0.00 0.00 30.26 1.47
530 712 2.940410 CCCGTCGTGGCTACAAAAATAT 59.060 45.455 0.00 0.00 35.87 1.28
531 713 2.289569 ACCCGTCGTGGCTACAAAAATA 60.290 45.455 0.00 0.00 35.87 1.40
532 714 1.161843 CCCGTCGTGGCTACAAAAAT 58.838 50.000 0.00 0.00 35.87 1.82
557 739 1.540797 CCGGTTTTTACGTCAGGACCA 60.541 52.381 0.00 0.00 0.00 4.02
575 757 1.997606 AGCGTATTTCTTTCCGTTCCG 59.002 47.619 0.00 0.00 0.00 4.30
576 758 2.095372 CCAGCGTATTTCTTTCCGTTCC 59.905 50.000 0.00 0.00 0.00 3.62
577 759 2.740447 ACCAGCGTATTTCTTTCCGTTC 59.260 45.455 0.00 0.00 0.00 3.95
594 779 3.319755 CAAAATTGCAGCCTGTAACCAG 58.680 45.455 0.00 0.00 38.50 4.00
603 788 1.551883 AGATGGACCAAAATTGCAGCC 59.448 47.619 0.00 0.00 0.00 4.85
647 851 1.374252 GCGTCGGCCTCTCTTCAAA 60.374 57.895 0.00 0.00 0.00 2.69
699 903 0.523072 ATTGGTTAGTTGCAGCTGCG 59.477 50.000 32.11 0.00 45.83 5.18
711 939 5.175859 GTGTTCCTCGATTCTGATTGGTTA 58.824 41.667 0.00 0.00 0.00 2.85
1411 1709 6.491745 CAGACACTAGGATTCTAGGAAGCATA 59.508 42.308 12.86 0.00 45.50 3.14
1412 1711 5.304101 CAGACACTAGGATTCTAGGAAGCAT 59.696 44.000 12.86 0.00 45.50 3.79
1442 1754 3.687125 ACACATCTCTACACCTCGAGAA 58.313 45.455 15.71 0.00 39.49 2.87
1475 1790 1.079819 CTACCACAGACACGGGCTG 60.080 63.158 7.44 7.44 39.26 4.85
1513 1828 3.591023 TCACATACACCACACCATAACG 58.409 45.455 0.00 0.00 0.00 3.18
1624 1997 1.007387 CTGCCAAAACGTTGAGGGC 60.007 57.895 23.65 23.65 44.82 5.19
1683 2058 0.179048 TGAACTGGGGCATATGAGCG 60.179 55.000 6.97 0.00 34.64 5.03
1685 2060 3.209410 GAACTGAACTGGGGCATATGAG 58.791 50.000 6.97 0.00 0.00 2.90
1746 2157 1.210478 GACAGAGCAAGGGCATTAGGA 59.790 52.381 0.00 0.00 44.61 2.94
1804 2215 4.023193 CCACTATGTTCCTTTCCACACAAC 60.023 45.833 0.00 0.00 0.00 3.32
1846 2258 1.557832 ACCTCCGGCAACAAATAGCTA 59.442 47.619 0.00 0.00 0.00 3.32
1847 2259 0.328258 ACCTCCGGCAACAAATAGCT 59.672 50.000 0.00 0.00 0.00 3.32
1848 2260 1.135402 CAACCTCCGGCAACAAATAGC 60.135 52.381 0.00 0.00 0.00 2.97
1849 2261 2.159382 ACAACCTCCGGCAACAAATAG 58.841 47.619 0.00 0.00 0.00 1.73
1911 2392 2.237143 TCGACAAAGAGCTTCCATGGAT 59.763 45.455 17.06 0.00 0.00 3.41
1912 2393 1.623311 TCGACAAAGAGCTTCCATGGA 59.377 47.619 11.44 11.44 0.00 3.41
1913 2394 2.099141 TCGACAAAGAGCTTCCATGG 57.901 50.000 4.97 4.97 0.00 3.66
1914 2395 4.488126 TTTTCGACAAAGAGCTTCCATG 57.512 40.909 0.00 0.00 0.00 3.66
1933 2414 8.765517 AGAATTTCATAGCTTCCATGGATTTTT 58.234 29.630 17.06 4.58 0.00 1.94
1934 2415 8.202137 CAGAATTTCATAGCTTCCATGGATTTT 58.798 33.333 17.06 6.45 0.00 1.82
1935 2416 7.201974 CCAGAATTTCATAGCTTCCATGGATTT 60.202 37.037 17.06 6.83 0.00 2.17
1936 2417 6.267014 CCAGAATTTCATAGCTTCCATGGATT 59.733 38.462 17.06 7.21 0.00 3.01
1963 2447 4.779987 CAAAAGCGGTTACACTTAGAACC 58.220 43.478 0.00 0.00 41.52 3.62
1978 2468 3.745332 TCACATGATACTGCAAAAGCG 57.255 42.857 0.00 0.00 0.00 4.68
1980 2470 7.878477 AAAACATCACATGATACTGCAAAAG 57.122 32.000 0.00 0.00 32.63 2.27
1992 2488 8.514594 ACACAGGAGTAAATAAAACATCACATG 58.485 33.333 0.00 0.00 0.00 3.21
1993 2489 8.635765 ACACAGGAGTAAATAAAACATCACAT 57.364 30.769 0.00 0.00 0.00 3.21
1994 2490 8.458573 AACACAGGAGTAAATAAAACATCACA 57.541 30.769 0.00 0.00 0.00 3.58
2048 2548 9.453572 AATTCTTCAACAGAGTGCAGATATTTA 57.546 29.630 0.00 0.00 31.12 1.40
2071 2571 7.709613 AGTGTCGAGTCACAAAGTTTACTAATT 59.290 33.333 8.66 0.00 40.37 1.40
2076 2576 4.565564 ACAGTGTCGAGTCACAAAGTTTAC 59.434 41.667 8.66 0.00 40.37 2.01
2143 2644 6.437162 ACCAAATGCCTATTACAAGACACAAT 59.563 34.615 0.00 0.00 0.00 2.71
2225 2737 5.700832 TGGTGCAGAAGAGTAACAAATACTG 59.299 40.000 0.00 0.00 45.00 2.74
2230 2742 6.127479 ACAATTTGGTGCAGAAGAGTAACAAA 60.127 34.615 0.78 0.00 43.22 2.83
2262 2774 2.733956 ACAAACAACCCAAGCTGAAGA 58.266 42.857 0.00 0.00 0.00 2.87
2307 2819 5.713861 AGGAAGCTGATAAGAAAACATTGCT 59.286 36.000 0.00 0.00 0.00 3.91
2308 2820 5.958955 AGGAAGCTGATAAGAAAACATTGC 58.041 37.500 0.00 0.00 0.00 3.56
2309 2821 7.373493 ACAAGGAAGCTGATAAGAAAACATTG 58.627 34.615 0.00 0.00 0.00 2.82
2310 2822 7.530426 ACAAGGAAGCTGATAAGAAAACATT 57.470 32.000 0.00 0.00 0.00 2.71
2312 2824 6.545666 TGAACAAGGAAGCTGATAAGAAAACA 59.454 34.615 0.00 0.00 0.00 2.83
2313 2825 6.970484 TGAACAAGGAAGCTGATAAGAAAAC 58.030 36.000 0.00 0.00 0.00 2.43
2314 2826 7.094205 GGATGAACAAGGAAGCTGATAAGAAAA 60.094 37.037 0.00 0.00 0.00 2.29
2315 2827 6.375455 GGATGAACAAGGAAGCTGATAAGAAA 59.625 38.462 0.00 0.00 0.00 2.52
2357 2890 9.364989 GCTGTGATGGATACTAGAGAATTTATC 57.635 37.037 0.00 0.00 37.61 1.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.