>input_sequence_81109
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-----------------ATGGCCCGCACGAAGCAGACGGCGAGGAAGTCCACCGGCGGCAAGGCGCCGCGCAAGCAGCTG
GCCACCAAGGCGGCTCGCAAGTCCGCCCCGGCCACCGGCGGCGTGAAGAAGCCGCACCGCTTCCGCCCCGGCACCGTCGC
GCTCCGGGAGATCCGCAAGTACCAGAAGAGCACCGAGCTGCTCATCCGCAAGCTGCCCTTCCAGCGCCTGGTGCGGGAGA
TCGCGCAGGACTTCAAGACCGACCTCCGCTTCCAGAGCTCCGCCGTCTCCGCGCTGCAGGAGGCCGCCGAGGCCTACCTC
GTCGGGCTCTTCGAGGACACCAACCTCTGCGCCATCCACGCCAAGCGCGTCACCATCATGCCCAAGGACATCCAGCTCGC
CCGCCGCATCCGTGGCGAGAGGGCCTAG----------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------------
>chr1A_1_TraesCS1A01G229000
CGGAATGCGGATGACCACTACTTCGACGACGAGGACAGAAGGCAGATCAGGGTTGTTACCGAAGCAAGCCTCTTTAAATT
GTCAAGTTCGGCCAGTCACTGTCCATTTCTTGCTAGAAGCTGGTTACTGTTCAAAGTGGTGATCTGGACTCTCATTTTTA
TGCACCGTTGGTGAATCTACTATAGGAGCGGTCTGCTGGTTGTAGTTGCTGACTTGGCGTGCCAGTATCATGGACCAGTA
ATATTGACTCTTGTTTGTAGAGTTTGGATTTCAAATGGAATGTGAAATGTGTGTACTTAACTGAAGGAATTGAAACTTCT
AGCAGCCGTTGGTGTTTGCCTGTTCTAGCAGTCTGGAGTACTTTTATTTAAGAGGGCAAGAGCATGGCCTTGGTGCTTGC
CTGTTCTTGGTGATATGTTCTGGCATACATT-------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------TGTTTTCTTCTTGGTGCTTGTGCGCAAT
ATGTATAATCTGCGCCAGTGCATCACATCAGTATACAGAAGTGAGCGACTGAGGTGACTCGTTCTGATTTTATATTTTTG
TAGCCACGACGGGTGGTCTGGTCCTGACGTAAAAACCGG---AACGGAAAGAAATACGCTGGTTACAGGCTGC-------
---------AATTTTGGTCCAT-CTGGATCATGCCACTCGT--CTGAACTTTTGAAGAGAGGCCGACGCAGCCCAGAGCC
CACAGTTGCGGCAGCCCGGGCAC------------------------GCAGCTGCAACTAACCAATCAGAATCGAGGAAC
ACCCACGCCACGGATCGCTG-CCCACGATCCGCGTGCCTCAGCCGAAACCAAATCCTCACCATCCATGGCTCGCAGATCC
AACGCTCGAAACTCGCCTC--TCCCG-----AAACACAGAGCGCCGAAAG----------AGCG----------GAAAAT
TCCCCGGACTCGCGCCCACCGGCCGCCC-C---CTCTCGTTAAAAGGAGCCCCGAATCCTTCCCTTGTTCCTCA------
TTCCACTCCCCAA-------------ATCTCCCGAGCAATCCTCTCT-------------------CCGCGCCCACGCAG
CAAGCCCTCCACTCCCGATGGCCCGCACGAAGCAGACGGCGAGGAAGTCCACCGGCGGCAAGGCGCCGCGCAAGCAGCTG
GCCACCAAGGCGGCTCGCAAGTCCGCCCCGGCCACCGGCGGCGTGAAGAAGCCGCACCGCTTCCGCCCCGGCACCGTCGC
GCTCCGGGAGATCCGCAAGTACCAGAAGAGCACCGAGCTGCTCATCCGCAAGCTGCCCTTCCAGCGCCTGGTGCGGGAGA
TCGCGCAGGACTTCAAGACCGACCTCCGCTTCCAGAGCTCCGCCGTCTCCGCGCTGCAGGAGGCCGCCGAGGCCTACCTC
GTCGGGCTCTTCGAGGACACCAACCTCTGCGCCATCCACGCCAAGCGCGTCACCATCATGCCCAAGGACATCCAGCTCGC
CCGCCGCATCCGTGGCGAGAGGGCCTAGT-ATGCTTCCTAGA-------------ATCCTAGTGTCTGATCTGTTCTCGA
GGTGTAGAGATGTGT---TAGTTTCTTATCAGCCCGTGTCTGTGGTAGTAAGGTTCCTTGATGGTTGCGTTATGGTGTGG
------TGTATGTGATGGTACCATCTTGTTATCATCATCAATGAGAAGTT------------------------------
---AGC-AATCTGATTTCAAACATGCCTGCTTGTTCGTCTG------------------GTTTATCGATGGATTTAGCCC
TCAACGTTT--TGGCAGCATTTGCTGCTAAAGGTGCCACTGAATTTGATGAACATGACGCTCATATGCCCCAG-------
--------------------------TTCAGTTCAATCTGAAACTGCTCACCTTG---TATAATTCGAGTCCTGTTTCCT
AATGCCCTTGCTCTGTCAATTCCTTTTTTTCCCTTCTAATCTTTACTCTCAATTGTTGTGTGGAAAGGAACATAGTGGAT
TGGATAACTG-CCTCTTTAGCT----------------------------------------------------------
-------ATTTGTTGCCG--GAGGTTGTCCCATAAACAAGTGTAGGGATCTGTACTCTTTTT--GGTGTGTATCCATGGA
AGCTCTTTGTCGAAAAAATCCATGGAAGC---TATGAAATTCTGGCGGTTCTAAGTG---TA---ACCGCTTTTGCAGT-
--A---TCATGTGATGTTTTATTT----ACTCCTGTGTTTGTGGGTTTTGGACTCCAAATGGAATGGTAAATATCTGCAC
TCTGTTGAAGAATTAGTAAACTTTGTGACTCGACACTGTAGTTTAAATATAATTTTGAATCTGAGATAGCTG-AATCAGT
GTAATTGTGTCTTGTAATAGGCATTTGGTAGTA-------GTAGCA-CAT---AAAAAAAATCAACTATAGCATCTTATA
TAGACTGAATTATTTCCAGTATTTGTTACTCTTCTGCACCAAATTGTGTCCAGTCTTCAGCTTGGGTTGTTTGTTGTCTC
AGGTTAGCTGCATCACTTAGCAATGTTTTCTTATCAGCTTCCTTGTT---------------------CATCCACCAGGC
CATTAGTATGATAAATTCTCTAGTATCCATCACAGCATCACTCAAGCGTGAAGAAGTCTTAAT
>chr1B_214
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------TTGGTGTGCCAGTATCATGGACCAGAA
TATTTGACTCTTGTTTGTAGAGTTTGGATTTCAAATGGAATATGAAATGTCTGTACTTAGATGAAGGAACCGAAACTTTT
GGGACTTGCCACTGCAGTACTCCCTCCGTTCCTAAATGTAAGTCTTTTTAGATATTTTAAATGGACTACAACATACGGAT
GTATGTAGACATATTTTAGAGTGTAGATTCACTTATTTTGCTCCGTATATAGTCACTTGTTGAAATATCTAAAAAGACTT
ATATTTGGGAACGGAGGGAGTACTATGTATAGTTTTAGATTTGAGATAGCAGCAGCGGACTGAATCTGTGCACCTAGCCA
TCATCACTTCAGTACTACCAAACTACTATCACAGGGCAAAAGAAACCGAGCGTGTTTTCTTTATGATAATCGTGCTAAAA
TCTCATATCCATGATCTCGATTTAGCATTGGAGCCATAGGAACAGTGAAACGTGGGGATCCCAG---------------G
CAGGCACGATGGCTGGTCCGGTCCTGGCACAATAACAATTGAAACGTGGGGAAGTGTTAAAAAAAATAAAAATTGAAACG
TGGGAAGGAAATTTCGGCCCATCCTCGATCATGCCATTCGT--CTGAACTA---AAGAGAGGCCAACGCAGCCCA-AGCC
CACAGTAGCGGCCGCCCGGGCAGGCAACCCAAAAAATAAAAGGCAACGCAGCTGCAATCAACCAATCAGAGCCGAGGAAC
ACCCGTGCCACGGATCGCTC-CGCACGATCCGCGTGCCTCACCCGAAACCAAATCCAGACCATCCACGCCTCACAGATCC
AACGCTCGAAACTCCCCTCCCCTCCCCTCCCGAAACACA-----AG--AG----------CGCG----------GAAAGT
TCCCCGGACTCGCGCCCACCCGCCGTCT-C---C-CTCCTTAAAACGGCCCCCTAATCCCTCC-TTGTTCCTCA------
TTCCAC-TCCCAA-------------ATCTCCCCAGCAATCCTCTCT-------------------CCGCGCCCACGAAG
CAAGCTCTCCACTCCCGATGGCCCGCACGAAGCAGACGGCGAGGAAGTCCACCGGCGGCAAGGCGCCGCGCAAGCAGCTG
GCCACCAAGGCGGCGCGCAAGTCCGCCCCGGCCACCGGCGGCGTGAAGAAGCCCCACCGCTTCCGCCCCGGCACCGTCGC
GCTCCGGGAGATCCGCAAGTACCAGAAGAGCACCGAGCTGCTCATCCGCAAGCTCCCCTTCCAGCGCCTGGTGCGGGAGA
TCGCGCAGGACTTCAAGACCGACCTCCGCTTCCAGAGCTCCGCCGTCTCCGCGCTGCAGGAGGCCGCCGAGGCCTACCTC
GTCGGGCTCTTCGAGGACACCAACCTCTGCGCCATCCACGCCAAGCGCGTCACCATCATGCCCAAGGACATCCAGCTCGC
CCGCCGCATCCGTGGCGAGAGGGCCTAGG-CTGCTTCCTAGA-------------ATCCTAGTGTCTGATCTGGCCTCGA
GGTGTAGAGATGCGT---TAGTTTCTTATTAGCCCGTGTCTGTGGTAGTAAGGCTCGTTGACGGTTGTGTTATGGTGTGT
GTGTGATGTATGTGATGGTACCATCTTGTTATCATCATTAGTG-G--------------------------------GAA
GTTAGCAAATCTGATTTTAAACATGCCTGCTTGTTTGTCTGATCTCAGTAAACGTTTTGGTTTGTCTATATA-TTATCCC
TCAATGTTT--TGGCAGCATTTGCTGGTAAAGGTGCCACTGGATCTGATGAACATGAGGTTCATATGCCAGCAAATGCAC
AACAAGGTGAGCAGCAGCAGGTGTCATTCAGTTCGACCTGCCCCTGCTCACCTTG---TACTA----------------T
AATGCCCTTGCTCTCTCAATTTCTTTTCCCCCCTTTTGATGGATACTCTCAAATTTTGTGTGGAAAGGAACATAGTGCAT
TGGATAACTG-TCTCTTCTTTGACTACAATGTTGTGCTTTTGAGTGCCAATCTATTTGAATGTTAAGTTTCAAATGTTCT
GT---CCATTTATTGCTG--GAGGTTGTCCCATAAACAAGTGTATCGATCTGTACCTTTTTTTGGGTGTGT---------
-----------------ATCCGTGGAAGA---TCTGAAATTCTGGCTGTTCTAAGTG---TA---ACTGGTTTTACAGT-
--A---T---GTGATGTTTTCTTTACTGACTCCTGTGTTTGTGGGTTTTGGACTCCAAATGGAATAGGAAATATCTGCAC
TCTGTTGAAGGATTAATAAACTTTGTGAGTCGCCATTGCCGTTTAAATATAATTTTGAATCTGAGATAGCTGCAATCAGT
GTAGTTGTGTCTTGTAATAGGCATTTGTTATTAA------GTAGCA-CATAAAAAAATTAATCAACTGTAGCATCATATA
TAGACTGAATTATTGCAAGTAATTGTTACTCTTCTGCACCAAATTTTGTCCAGCCTTCAG-TTGGGTTGTTTGTTGTCTC
TAGTTAGCTGCATCACTTTCTCAGCGATGT---TCAGCTTCCTCGTTGCATGCATATTCTCCATGTCCCGTCCACCAGGC
CATTAGTATTATAAATTCTCTAGTATCCATCACAACATCACTCAAGCGTGAAGAAGTCTTAAT
>chr1B_439
--------------------------------------------------------------------------------
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-----------------------------------------------------------TTCTTGGTGCTT----GCAAT
ATGTACAATCTGCGCTAGTGCATCACATCAGCATACAGAAGTGAGCGACTGAGGTGACTCGTTCTGATTTTT--TTTTTG
TAACCACGACGAGTGGTCCGGTCCTGGCGTAAAA---ATTGAAACGGAAAGAAATACGGTGGTTACATGCTGC-------
---------AATTTTGGTCCATCCTGAATCACGCCACTCGTCTCTGAACTCTTGAAGAGAGGCCAATGCAGCCCAGAGTC
TACAGTTGCGGCCGCCCGAGC------------------------ACGCAGCTGCAACCAACCAATCAGAATCGAGGAAC
ACCCACGCCACGGATCGCTG-CCCACGATCCGCGTGCCACACCCAAAACCAAATCCTCACCATCCACGCCTCGCAGATCC
AACGCTCGAAACTCCCCTCCCCTCCC-----GAAACA------CAG--AG----------CGCG----------GAAAAT
TCCCCAGACTCGCGCTCACCCGCCGTCT-C---C-CTCCTTAAAACGGGCCCCGAATCCCTCC-TTGTTCCTCA------
TTCCAC-TCCCAA-------------ATCTCCCCAGCAACCCTCTCT-------------------CCGCGCCCACGAAG
CAAGCTCCACACTCCCGATGGCCCGCACGAAGCAGACGGCGAGGAAGTCCACCGGCGGCAAGGCGCCGCGCAAGCAGCTG
GCGACCAAGGCGGCGCGCAAGTCCGCCCCGGCCACCGGCGGCGTGAAGAAGCCCCACCGCTTCCGCCCCGGCACCGTCGC
GCTCCGGGAGATCCGCAAGTACCAGAAGAGCACCGAGCTGCTCATCCGCAAGCTGCCGTTCCAGCGCCTGGTGCGGGAGA
TCGCGCAGGACTTCAAGACCGACCTCCGCTTCCAGAGCTCCGCCGTCTCCGCGCTGCAGGAGGCCGCCGAGGCCTACCTC
GTCGGGCTCTTCGAGGACACCAACCTCTGCGCCATCCACGCCAAGCGCGTCACCATCATGCCCAAGGACATCCAGCTCGC
CCGCCGCATCCGTGGCGAGAGGGCCTAGG-CTGCTTCCTAGA-------------ATCCTAGTGTCTGATCTGGTCTCGA
GGTGTAGAGATGCGTTACTAGTTTCTTATTAGCCCTTGTCTGTGGTAGTAAGGTTCCTCGACAGTTGTGTTATGGTGTGA
TGTAC-TGTATGTGATGGTACCATCTTGTTATCATCATCAATGAGAAGTT------------------------------
---AGC-AATCTGATTTTAAACATGCCTGCTTGTTCGTCTG------------------GTTTATCGATGGATTTATCCC
TCCACGTTT--TGGCAGCATTTGCTGCTGAAGGTGCCACCGAATTTGATAAACGA-----TCATATGCCCCAG-------
--------------------------TTCAGTGCAATCTGAAACTGCTCACCTTG---TATAAATCGAGTCCGTTTCTTG
ATGTCCTTTGCTCTGTCAATTCCTTTTTCTT-CTTCTAATCTTTACTCTCAATTCTTGCCTGGGAAGGACCATAGTGGGT
TGGATAACTA-TCTCTTCTTTGGCTACA--GTTGTGCTTTTGAATGGCAATCTCTTTGAATATTAAGTTTCAAATGTTCT
GTGATCCATTTGTTGCCG--GAGGTTGTCCCATAAACAAGTGTAGGGATCTGTACTCTTTTT--GGTGTGT---------
-----------------ATCCATGGAAGC---TATTAAATTTTGGCTGTTCTGAGTGTACTA---ACTGGTTTTGCAGT-
--GTCAT---GTGATGTTTTCTTTACTGACTCCTGTGTTTGTGGGTTTTGGACTCCAAATGGAACGGGAAATATCTGCAC
TCTGTTGAAGGATTAATAAACTTTGTCAGTCGCCACTGTCGTTTAAATAT-ATTTTGAATCTGAGATAACTGTGATCAGT
GTAGTTGTGTCTTGTAATAGGCATTTGTTATTAAGTTCTAGTAGCA-CATA-AAAAAAATATCAACTGTAGCATCGTATA
TAGACTGAATTATTTCAAGTAATTGTTACTCTTCTGCACCAAATTTTGTCCAGCCTTCAGCTTGGGTTGTTTGTTGTCTC
GAGT-AGCTGCATCACTTTCTCAGTGATGCAT--------------------CATATTCTCAATGTCCCATTCACCGGGC
TATTAGTATTATAAATTCTCTAGTATCCATCACAGCATCACTCAAGCATGAAGAAGTATTAAT
>chr1D_696
--------------------------------------------------------------------------------
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-----------------------------------------GGCAACGCAGCTGCAACCAACCAACCAGAGCCGAGGAAC
ACCCACGCCACGGATCGCTG-CCCACGATCCGCGTGCCTCACCCGAAACGAAATCCTCACCATCCATGGCTCGCAGATCC
AACGCTCGAAACACGCCTCTCTCCCG-----AAACACAGAGCGCCGAAAG----------AGCG----------GAAAAT
TCCCCAGACTCGCGCCCACCGGGCCGCCCC---CTCTCGTTAAAAGGAGCCCCGAATCCTTCCATCGTTCCTCA------
TTCCAA-CCCCAA-------------ACCTCCGAAGCAATCCTCTCT-------------------CCGCGCCCACGAAG
CAAGTCCTCCACTCCCGATGGCCCGCACGAAGCAGACGGCGAGGAAGTCCACCGGCGGCAAGGCGCCGCGGAAGCAGCTG
GCCACCAAGGCGGCGCGCAAGTCCGCCCCGGCCACCGGCGGCGTGAAGAAGCCCCACCGCTTCCGCCCCGGCACCGTCGC
GCTCCGGGAGATCCGCAAGTACCAGAAGAGCACCGAGCTGCTCATCCGCAAGCTGCCCTTCCAGCGCCTGGTGCGGGAGA
TCGCACAGGACTTCAAGACCGACCTCCGCTTCCAGAGCTCCGCCGTCTCCGCGCTGCAGGAGGCCGCCGAGGCCTACCTC
GTCGGGCTCTTCGAGGACACCAACCTCTGCGCCATCCACGCCAAGCGCGTCACCATCATGCCCAAGGACATCCAGCTCGC
CCGCCGCATCCGTGGCGAGAGGGCCTAGG-CTGCTTCCTGCTC-CCCAGTGTCTGAT-------------CTGGTGTTGA
GGTGTAGAGTTGTGT---TAGTTTCTTATTAGCCCGTGTCTGTGGTAGTAAGGCTCGTGGACGGTTGTGTTATGG-----
-TGTGATGTATGTGATGGCATCATCTTGTTATCATCATCAATG-GAAGTT------------------------------
---AGC-AATCTGATTTTAAACATGCCTGCTTGTTTGTCTGATCTCAT--------------------------------
-----------------------------ATGCTGCCACTGGATCTGATCCACTA-----TGTTCCTTTCCACGCA----
--------------------------------------------------------------------------------
-----------------------ATTTTTCCACTGTCGATGGTTACTCTCAATTCTTGCGTGGAAAGGAACATAGTGGAT
TG---------TCTCTTCTTTGCCTACA--GTTGTGCTTTTGAATGCCAATCTCTTTGAATATTAAGTTTCAAATGTTCT
GT---CCATTTGTTGCTG--GAGGTTGTCCCATAAACAAGTGTACT--------------------TGTGT---------
-----------------ATCCATGGAAGC---TATGAAATTCTGGCTGTTCTAAGTG---TA---ACTGGTTTTGCAGT-
--ATCAT---GTGATGTTTTATTTACTGACTCCTGTGTTTGTGGGTTTTGGACTCCAAATGGAACGGGAAATATCTGCAC
TCTGTTGAAGGATTAATAAACTCTGTGAGTCGCCACTGTCGTTTAAATATAATTTTGAATCTGAGATAGCTGTAATCAGT
GTAGTTGTGTCTTGTAATAGGCATTTGTTATTAATCAGAGCAGCACAT-----------TATCAAATGTAGCATCTTATA
TAGACTGAATTATTGCAAGTAATTGTTACTCTTCTGCACCAAATTTTGTCCAGCCTTCAG-TTGGGTTGTTTGTTGTCTC
AAGTTAGCTGCATCACT---------------------------------------------------------------
---------------------------------------------------------------
>chr1D_707
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-----------------------------------------------------GCAACCAACCAACCAGAGCCGAGGAAC
ACCCACGCCACGGATCGCTC-CCCACGATCCGCGTGCCTCAGCCGAAACCAAATCCTCACCATCCACGCCTCGCAGATCC
AACGCTCGAAACTCCCCTCCCCTCCCCTCCCGAAACA------TAG--AG----------CGCG----------GAAAAT
TCCCCGGACTCGCGCCCACCTGCCGTCTCC---C-CTCCTTAAAACGGCCCCCGAATCCCTCC-TTGTTCCTCATTCCAC
TTCCAC-TCCCAA-------------ATCTCCCGAGCAATCCTCTCT-------------------CCGCGCCCACGAAG
CAAGCTCTCCACTCCCGATGGCCCGTACGAAGCAGACGGCGAGGAAGTCCACCGGCGGCAAGGCGCCGCGGAAGCAGCTG
GCGACCAAGGCGGCGCGCAAGTCCGCCCCGGCCACCGGCGGCGTCAAGAAGCCCCACCGCTTCCGCCCCGGCACCGTCGC
GCTCCGTGAGATCCGCAAGTACCAGAAGAGCACCGAGCTGCTCATCCGCAAGCTCCCCTTCCAGCGCCTGGTGCGGGAGA
TCGCGCAGGACTTCAAGACCGACCTCCGCTTCCAGAGCTCCGCCGTCTCCGCGCTGCAGGAGGCCGCCGAGGCCTACCTC
GTGGGGCTCTTCGAGGACACCAACCTCTGCGCCATCCACGCCAAGCGCGTCACCATCATGCCCAAGGACATCCAGCTCGC
CCGCCGCATCCGTGGCGAGAGGGCCTAGG-CTGCTTCCTAGA-------------AT-------------CTGGTCTCGA
GGTGTAGAGATGCGT---TAGTTTCTTCTTAGCCCGTGTCTGTGGTAGTAAGGTTCCTTGATGGTTGTGTTATGG-----
----------TGTGATGGTACCATCTTGTTATCATCATCAATGAGAAGTT------------------------------
---AGC-AATCTGATTTTAAACATGCCTGCTTGTTTGTCTGATCTCAGTAAACGTTTTGGTTTGTCGATAGATTTATCCC
TCAACGTTTGGTGGCAGCATTTGCTGGTAAAGGTGCCGCTGGATCTGATGAACATGAGGTTCATATGCCCCAG-------
--------------------------TTCAGTTCGGCCTGCCCCTGCTCACATTGCACTATAATTCGACTCTTGCTGTCT
AATGCCCTTGCTCTCTCAATTCCCCATTTTCCCC------------------TTCTTGCATGGAAAGGAACAGAGTGGAT
TTGATGGTTACTCTCTTCTTTTGCTACAATCGTGTGCTTTTGAATGCCAATCTATTTGAATGTTAAGTTTCAAATGTTCT
GT---TCATTTATCGCTG--GAGGTTGTCCCATAAACAAGTGTAGGGATCAGTACCTTTTTT--GGCGTGT---------
-----------------ATCCATGGAAGATAGTATGAAATTCTGGCTGTTCTAAGAG---CACTAACTGGTTTTGCAATG
TCA---T---GTGATGTTTTCTTTACTGATTCCTGTATTTGTGGGTTTTGGACTCCAAATGGAATGGGAAATATCTGCAC
TCTGTTGAAGGATTAATAAACTTTGTGGCTCGACACTGTACTTTAAATATAATTTTGAATCTGAGATAGCTGTAATCAGT
GTAGTTGTGTCTTGTAATAGGCATTTGTTAGTA-------GTACTAGCATATAAAAAAAAATCAACTATAGCATCTTATA
TAG-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------
>chr1A_713
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-----------------------------------------------------------AACCAATCAGGGCGCAGGAAC
CACCACGCCGCGGATCGCCC-CCCACGATCCGCGTGCCTCGCCCGAGGCCATATCCCCACCGTCCACTCTAC-CAAATCC
AACGCTCCAAACCCACCTCGCTTCCC-----AAAACCAGCACCCAC--CCGCCCCCGAAACCC-----------AAAATT
TCCGCAGCCTCGCGCCCACCCGCCGCCTA----------TTAAAATCCA-CCCGACTCCCCGTCGTCCTCCTCA------
CTCCAA-TCCCATCCTCCATTCCCAGATCCCCCAAGAGCTCCCTCTCCCCCACCCACGAAGCGC----------------
------CTCCCATCCCGATGGCCCGCACGAAGCAGACGGCGAGGAAGTCCACCGGCGGCAAGGCGCCGCGGAAGCAGCTG
GCGACCAAGGCGGCGCGCAAGTCCGCCCCGGCCACCGGCGGCGTGAAGAAGCCCCACCGCTTCCGCCCCGGCACCGTCGC
GCTCCGCGAGATCCGCAAGTACCAGAAGAGCACCGAGCTGCTCATCCGCAAGCTGCCCTTCCAGCGCCTGGTGCGGGAGA
TCGCGCAGGACTTCAAGACCGACCTCCGCTTCCAGAGCTCCGCCGTCTCCGCGCTGCAGGAGGCCGCCGAGGCCTACCTC
GTCGGGCTCTTCGAGGACACCAACCTCTGCGCCATCCACGCCAAGCGCGTCACCATCATGCCCAAGGACATCCAGCTCGC
CCGCCGCATCCGTGGCGAGAGGGCCTAG----------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------------
>chr4D_713
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-----------------------------------------------------------AACCAATCAGAATCGAGGAAC
CCCCGCGCCGCGGATCACTCCCCGACGATCCGCGTGAATCGTCTGAAACTAAATCCTCACCACCCACTCCCCACAGATCC
AACGCTCGGAACTCCTCCCCCCTCCC-----GAAGCA------CAT--CG----------CGCCCAGAAACGCAAAAATT
TCCCCAGACTCGCGCCCACCGGCCGCCTCCTCCCGCTCGTTAAAACCCC-CGGATCCCCTCGCCGTCTTCCTCA------
TCCCAGCCCCCAA-------------ATCTCCCAAGCAGTTCATCTCCTCAACCCT---GAGCCCGCCGCGCCCGCCTGC
CCGC---------CCCGATGGCCCGCACGAAGCAGACGGCGAGGAAGTCCACCGGCGGCAAGGCGCCGCGGAAGCAGCTG
GCGACCAAGGCGGCGCGCAAGTCCGCCCCGGCCACCGGCGGCGTGAAGAAGCCGCACCGCTTCCGCCCCGGCACCGTCGC
GCTCCGCGAGATCCGCAAGTACCAGAAGAGCACGGAGCTGCTCATCCGCAAGCTGCCCTTCCAGCGCCTGGTGCGGGAGA
TCGCGCAGGACTTCAAGACCGACCTCCGCTTCCAGAGCTCCGCCGTGTCCGCGCTCCAGGAGGCCGCCGAGGCCTACCTC
GTGGGGCTGTTCGAGGACACCAACCTCTGCGCCATCCACGCCAAGCGCGTCACCATCATGCCCAAGGACATCCAGCTCGC
CCGCCGCATCCGTGGCGAGAGGGCCTAG----------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------------------------------
>chr4A_715
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------CCAATCAGAATCGAGAAAC
CAGCGCGCCACGGATCGCTCCCCCACGATCCGCGTGACTCATCTGAAACTAAATCCTCACCACCCATTTCCCGCAGATCC
AACGCTCGGAACTCCTCCCCCCTCCC-----AAAGCA------CAC--CGCGCCCAGAAACGCG----------AAATTT
TCCCCAGACTCGCGCCCACCGGCCGCCTCC---CGCTCCTTAAAACCAC-CGGATCCCCTCCCCGTCTTCCTCA------
TCCTCATCCC----------------AGCCCCCAAGCAGTTCCCCTCCTCAACCCCCGAGAGTCCGCCGCGCCCACCCGC
CAGC---------CCCGATGGCCCGCACGAAGCAGACGGCGAGGAAGTCCACCGGCGGCAAGGCGCCGCGGAAGCAGCTG
GCGACCAAGGCGGCGCGCAAGTCGGCCCCGGCCACCGGCGGCGTGAAGAAGCCGCACCGCTTCCGCCCCGGCACCGTCGC
GCTCCGGGAGATCCGCAAGTACCAGAAGAGCACCGAGCTGCTCATCCGCAAGCTGCCCTTCCAGCGCCTGGTGCGGGAGA
TCGCGCAGGACTTCAAGACCGACCTCCGCTTCCAGAGCTCCGCCGTGTCCGCGCTCCAGGAGGCCGCCGAGGCCTACCTC
GTGGGGCTGTTCGAGGACACCAACCTCTGCGCCATCCACGCCAAGCGCGTCACCATCATGCCCAAGGACATCCAGCTCGC
CCGCCGCATCCGTGGCGAGAGGGCCTAG----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------------
>chr1A_1266
--------------------------------------------------------------------------------
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------------------------------------------CCGTCTCTGAGCTGCAGGAGGCCGCCGAGGCCTACCTC
GTCGGGCTCTTCGAGGACACCAACCTCTGCGCCATCCACGCCAAGCGCGTCACCATCATGCCCAAGGACATCCAGCTTGC
CCGCCGCATCCGTGGCGAGAGGGCCTAAGACTGCTTCCTAGAATCCTAGTGTCTGAT-------------ATGGTCTTGA
GGTGTAGAGATGCGT---TAGTTTCTTATTAGCCCGTGTCTGTGGTAGTAAGGTTCTTTGACGGTTGTGTTATGA-----
-TGTGATGTATGTGATGGTACCATCTTGTTATCATCATCAATGAGAAGTTAGCAATCTCCCGCAAAAAAAAAGAAGAGAA
GTTAGC-AATTTGATTTTAAACAGGCCTGCTTGTTTGTCTGATCTAAGTAAACGTTTTGGTTTACCGACAGATTTACCCT
CAAC--TTT--TGGGAGCATTTGCTGGTAAACGTGCCACTGAATCTGATGAACTTGAGGTTCATATGCCCCAG-------
--------------------------TTCAGTTCAATTTGCCCATGCTCACCTTG---TATAATTCGAGTCCAGCTGCCT
AATGCCCTTGCTCTCTCAATTCCATTTTTTCACTTTTGATGGTTACTCTCAATTCTTGCATGGAAAGGAACATATTGGAT
TGGGTTGTGTGC-------------------------------------------------------TTTCAAATGTTCT
GT---CCATTTATTGCTGGAGAGGTTGTCCCATAAACAAGTGTAAGGATATGTACTCAATTT--GATGTGC---------
-----------------ATCCATGGAAGC---TATGAAATTCTGGCTGTTCTAAGTG---TACTAACTGGTTTTGCAGT-
--ATCAT---GTTCAAAGTACAATA---------GTGTTTGTGGGTTTTGGACTCCAAATGGAATGGGAAATATCTGCAC
TCTGTTGAAGGATTAATAAACTTTGTGGCTCGACACT--AGTTTAAATATAATTTTGAATATGAGATAGCTGTAATCAGT
GTACTTGTGTCTTGTAATAGGCATTTGTTAGTA-------GTAGCA-CAT---AAAAAAAATCAACTATAGCATCTTATA
TAGACTAAATTATTTTAAGTAATTGTTACTCTTCTCCACCAAATTGTGTCCAACCTTCAGCTTGGGTTGTTTGTTGTCTC
GGGTTAGCTGCATCACTTTCTCGGC---TCTTATCAGCTTCCTTTTTGCATGCATATTCTCCATGTCCCATCCACCAGGC
CATTAGTATTATAAATTCTCTAGTATCCATCACAGCATCACTCAAGCGTGAAGAAGTCTTAAT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S--------------------S-
SSS--------------------------------------S--------S--------SS--------SS-------S-
S-S-SSS-SSSS--SSSSS--SSSSSS-SSSSSSSSS---SS-S-S----SSSSSSSS-S-SSSSSSS-SSSS-S-SSSS
S-S-SSSSSSSS--S-SSSSSS-S-S-SSSS-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------S---------------------------------------SSS------
------------------S-------S---------SSS-------------------S--------S------------
--------------------------------------------------S-------------S---------------
------------S---------S-----------------------------------S---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------S-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------S-S------------------------------------------S------
-----------------------------S-------------------------------------S-----------S
--------------------------------------------------------------------------------
-----------------S----------------------------------------------------------S---
---------------------------------------------------------S-S--------------------
----------------------------------------------------------------------------S---
------------------------------------------------------S-------------------------
-----------------SSSS-----------------------------------------------------------
-----------------------------------------------------------------------SSSSSSSSS
SSSSSSSSSSSSSSSSS-----------------------------S--------------------S-S----------
-------SSS---------------------------------------------------------S------------
----------S----S----------------------------------------------------------------
---S-----------------------S----------------------------------------------------
----------------S----S-------------------------------S--------------------------
------------------SSSS-SSSS-----------------------------------------------------
---------S-----------------------------------------------------
>forward_412
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------GTGCTTGC
CTGTTCTTGGTG--------------------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_2058
--------------------------------------------------------------------------------
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---------------------------------------------------------CGCTCATATGCCCCAGTTCA---
--------------------------------------------------------------------------------
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