Multiple sequence alignment - TraesCS1A01G226800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G226800 chr1A 100.000 2502 0 0 1 2502 397083241 397085742 0.000000e+00 4621.0
1 TraesCS1A01G226800 chr1A 85.811 148 13 4 2143 2288 397085241 397085382 1.550000e-32 150.0
2 TraesCS1A01G226800 chr1A 85.714 147 15 2 2001 2142 397085383 397085528 1.550000e-32 150.0
3 TraesCS1A01G226800 chr1A 94.545 55 3 0 2138 2192 451282947 451283001 4.430000e-13 86.1
4 TraesCS1A01G226800 chr1D 94.037 1308 35 14 1 1290 316235466 316236748 0.000000e+00 1943.0
5 TraesCS1A01G226800 chr1D 93.103 348 18 4 1595 1942 316244252 316244593 2.870000e-139 505.0
6 TraesCS1A01G226800 chr1D 96.091 307 9 3 1282 1586 316243969 316244274 4.810000e-137 497.0
7 TraesCS1A01G226800 chr1D 94.737 114 6 0 1934 2047 386156715 386156828 7.110000e-41 178.0
8 TraesCS1A01G226800 chr1D 93.939 66 4 0 2187 2252 316244591 316244656 1.580000e-17 100.0
9 TraesCS1A01G226800 chr1D 97.826 46 1 0 2060 2105 316244611 316244656 2.060000e-11 80.5
10 TraesCS1A01G226800 chr1B 96.379 856 24 4 719 1574 428615715 428616563 0.000000e+00 1402.0
11 TraesCS1A01G226800 chr1B 95.951 741 22 4 1 733 428607917 428608657 0.000000e+00 1195.0
12 TraesCS1A01G226800 chr2A 97.233 253 7 0 2250 2502 666317311 666317563 1.780000e-116 429.0
13 TraesCS1A01G226800 chr2A 93.220 118 6 2 1940 2057 209894272 209894157 3.310000e-39 172.0
14 TraesCS1A01G226800 chr2A 94.545 55 3 0 2138 2192 82351629 82351575 4.430000e-13 86.1
15 TraesCS1A01G226800 chr2A 93.220 59 1 2 2138 2193 714025958 714025900 1.590000e-12 84.2
16 TraesCS1A01G226800 chr2A 89.231 65 5 2 2138 2202 738335153 738335091 2.060000e-11 80.5
17 TraesCS1A01G226800 chr7B 90.698 258 14 5 2253 2502 662904138 662903883 3.990000e-88 335.0
18 TraesCS1A01G226800 chr3B 95.614 114 5 0 1933 2046 92927984 92927871 1.530000e-42 183.0
19 TraesCS1A01G226800 chr3D 93.966 116 7 0 1931 2046 103633172 103633287 2.560000e-40 176.0
20 TraesCS1A01G226800 chr2D 91.803 122 10 0 1926 2047 382457158 382457279 1.190000e-38 171.0
21 TraesCS1A01G226800 chr2D 90.000 130 10 3 1923 2051 638315898 638316025 5.540000e-37 165.0
22 TraesCS1A01G226800 chr4A 93.103 116 6 2 1940 2055 381227047 381226934 4.280000e-38 169.0
23 TraesCS1A01G226800 chr4A 88.889 72 4 3 2138 2209 113576083 113576016 4.430000e-13 86.1
24 TraesCS1A01G226800 chr7A 93.694 111 6 1 1940 2050 622370152 622370043 5.540000e-37 165.0
25 TraesCS1A01G226800 chr7A 94.545 55 2 1 2138 2192 15083233 15083286 1.590000e-12 84.2
26 TraesCS1A01G226800 chr5A 88.406 138 14 2 1936 2071 706934080 706933943 5.540000e-37 165.0
27 TraesCS1A01G226800 chr5A 90.625 64 4 2 2138 2201 325921955 325921894 1.590000e-12 84.2
28 TraesCS1A01G226800 chr6A 96.226 53 2 0 2138 2190 108931291 108931343 1.230000e-13 87.9
29 TraesCS1A01G226800 chr7D 92.500 40 2 1 2060 2098 212881202 212881241 3.480000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G226800 chr1A 397083241 397085742 2501 False 1640.333333 4621 90.508333 1 2502 3 chr1A.!!$F2 2501
1 TraesCS1A01G226800 chr1D 316235466 316236748 1282 False 1943.000000 1943 94.037000 1 1290 1 chr1D.!!$F1 1289
2 TraesCS1A01G226800 chr1D 316243969 316244656 687 False 295.625000 505 95.239750 1282 2252 4 chr1D.!!$F3 970
3 TraesCS1A01G226800 chr1B 428615715 428616563 848 False 1402.000000 1402 96.379000 719 1574 1 chr1B.!!$F2 855
4 TraesCS1A01G226800 chr1B 428607917 428608657 740 False 1195.000000 1195 95.951000 1 733 1 chr1B.!!$F1 732

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
686 710 2.038659 CCTGGTGTTTGAATTGGTGGT 58.961 47.619 0.0 0.0 0.0 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2478 2503 0.172352 GGAGAAGTCGAGCTGTGGAG 59.828 60.0 0.0 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
169 170 4.823419 TACGGCATGGCGTTCCGG 62.823 66.667 45.20 19.22 46.78 5.14
193 194 2.667418 CTGCAGTGGGTGAGGGAG 59.333 66.667 5.25 0.00 0.00 4.30
477 478 2.600731 CGTCTACAAGAAGCAGTGGAG 58.399 52.381 0.00 0.00 0.00 3.86
686 710 2.038659 CCTGGTGTTTGAATTGGTGGT 58.961 47.619 0.00 0.00 0.00 4.16
689 713 4.100189 CCTGGTGTTTGAATTGGTGGTAAA 59.900 41.667 0.00 0.00 0.00 2.01
693 717 7.967908 TGGTGTTTGAATTGGTGGTAAATATT 58.032 30.769 0.00 0.00 0.00 1.28
920 944 6.405065 GGCATGCTTGTATATATGGAATGTGG 60.405 42.308 18.92 0.00 0.00 4.17
954 978 8.737175 TGCATATCTCCTACGTACTTAATTAGG 58.263 37.037 0.00 0.00 33.57 2.69
1025 1049 1.515088 CAGCCTACAGACTGCGTCG 60.515 63.158 1.25 0.00 37.67 5.12
1047 1071 1.412710 TCTCATAATCTCCCACACCGC 59.587 52.381 0.00 0.00 0.00 5.68
1192 1216 5.243507 TGTGTATTTTGCACTGACATCCATT 59.756 36.000 0.00 0.00 37.70 3.16
1193 1217 5.574055 GTGTATTTTGCACTGACATCCATTG 59.426 40.000 0.00 0.00 34.30 2.82
1263 1287 1.153647 CTACGAAGATGGCCGTGCA 60.154 57.895 0.00 0.00 39.54 4.57
1329 1353 4.760204 ACCGTGAAATTTTGTCTTCCTAGG 59.240 41.667 0.82 0.82 0.00 3.02
1338 1362 7.611213 ATTTTGTCTTCCTAGGAATTGTACG 57.389 36.000 24.48 11.84 33.28 3.67
1347 1371 5.048507 CCTAGGAATTGTACGTCTAAAGGC 58.951 45.833 1.05 0.00 0.00 4.35
1530 1554 3.566742 TGTGGATATTGATGCATGCAGTC 59.433 43.478 26.69 21.41 35.65 3.51
1744 1769 2.632377 ACTAATTGGTGGCATGACTCG 58.368 47.619 0.00 0.00 0.00 4.18
1750 1775 1.621317 TGGTGGCATGACTCGAACTTA 59.379 47.619 0.00 0.00 0.00 2.24
1753 1778 3.063997 GGTGGCATGACTCGAACTTATTG 59.936 47.826 0.00 0.00 0.00 1.90
1761 1786 6.125327 TGACTCGAACTTATTGTTTTTGCA 57.875 33.333 0.00 0.00 39.30 4.08
1855 1880 5.123027 CCATCTAACCTTGAAAGTGCTCTTC 59.877 44.000 0.74 0.00 32.90 2.87
1874 1899 4.874396 TCTTCTGAGCAGAGCATAAATGTG 59.126 41.667 0.00 0.00 38.88 3.21
1918 1943 0.102120 GCTCTGAGATCCTCACGTGG 59.898 60.000 17.00 6.38 35.39 4.94
1930 1955 1.738099 CACGTGGCAGTGTAGAGGC 60.738 63.158 7.95 0.00 37.35 4.70
1935 1960 2.361119 CGTGGCAGTGTAGAGGCTTATA 59.639 50.000 0.00 0.00 0.00 0.98
1939 1964 6.572509 CGTGGCAGTGTAGAGGCTTATATATT 60.573 42.308 0.00 0.00 0.00 1.28
1940 1965 7.362660 CGTGGCAGTGTAGAGGCTTATATATTA 60.363 40.741 0.00 0.00 0.00 0.98
1941 1966 7.760340 GTGGCAGTGTAGAGGCTTATATATTAC 59.240 40.741 0.00 0.00 0.00 1.89
1942 1967 7.674348 TGGCAGTGTAGAGGCTTATATATTACT 59.326 37.037 0.00 0.00 0.00 2.24
1943 1968 8.192110 GGCAGTGTAGAGGCTTATATATTACTC 58.808 40.741 0.00 0.00 0.00 2.59
1944 1969 8.192110 GCAGTGTAGAGGCTTATATATTACTCC 58.808 40.741 0.00 0.00 0.00 3.85
1945 1970 8.688151 CAGTGTAGAGGCTTATATATTACTCCC 58.312 40.741 0.00 0.00 0.00 4.30
1946 1971 8.625571 AGTGTAGAGGCTTATATATTACTCCCT 58.374 37.037 0.00 0.00 0.00 4.20
1947 1972 8.905850 GTGTAGAGGCTTATATATTACTCCCTC 58.094 40.741 0.00 0.00 38.27 4.30
1948 1973 8.060075 TGTAGAGGCTTATATATTACTCCCTCC 58.940 40.741 0.00 0.00 38.66 4.30
1949 1974 6.130569 AGAGGCTTATATATTACTCCCTCCG 58.869 44.000 0.00 0.00 38.66 4.63
1950 1975 5.840081 AGGCTTATATATTACTCCCTCCGT 58.160 41.667 0.00 0.00 0.00 4.69
1951 1976 6.262207 AGGCTTATATATTACTCCCTCCGTT 58.738 40.000 0.00 0.00 0.00 4.44
1952 1977 6.380560 AGGCTTATATATTACTCCCTCCGTTC 59.619 42.308 0.00 0.00 0.00 3.95
1953 1978 6.406737 GGCTTATATATTACTCCCTCCGTTCC 60.407 46.154 0.00 0.00 0.00 3.62
1954 1979 6.154021 GCTTATATATTACTCCCTCCGTTCCA 59.846 42.308 0.00 0.00 0.00 3.53
1955 1980 7.310237 GCTTATATATTACTCCCTCCGTTCCAA 60.310 40.741 0.00 0.00 0.00 3.53
1956 1981 8.495160 TTATATATTACTCCCTCCGTTCCAAA 57.505 34.615 0.00 0.00 0.00 3.28
1957 1982 5.906772 ATATTACTCCCTCCGTTCCAAAT 57.093 39.130 0.00 0.00 0.00 2.32
1958 1983 4.586306 ATTACTCCCTCCGTTCCAAATT 57.414 40.909 0.00 0.00 0.00 1.82
1959 1984 5.703730 ATTACTCCCTCCGTTCCAAATTA 57.296 39.130 0.00 0.00 0.00 1.40
1960 1985 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
1961 1986 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
1962 1987 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
1963 1988 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
1964 1989 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
1965 1990 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
1966 1991 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
1967 1992 1.060122 CCGTTCCAAATTACTCGTCGC 59.940 52.381 0.00 0.00 0.00 5.19
1968 1993 1.722464 CGTTCCAAATTACTCGTCGCA 59.278 47.619 0.00 0.00 0.00 5.10
1969 1994 2.222508 CGTTCCAAATTACTCGTCGCAG 60.223 50.000 0.00 0.00 0.00 5.18
1970 1995 2.991190 GTTCCAAATTACTCGTCGCAGA 59.009 45.455 0.00 0.00 0.00 4.26
1971 1996 3.306917 TCCAAATTACTCGTCGCAGAA 57.693 42.857 0.00 0.00 39.69 3.02
1972 1997 3.655486 TCCAAATTACTCGTCGCAGAAA 58.345 40.909 0.00 0.00 39.69 2.52
1973 1998 4.250464 TCCAAATTACTCGTCGCAGAAAT 58.750 39.130 0.00 0.00 39.69 2.17
1974 1999 4.092821 TCCAAATTACTCGTCGCAGAAATG 59.907 41.667 0.00 0.00 39.69 2.32
1975 2000 4.334443 CAAATTACTCGTCGCAGAAATGG 58.666 43.478 0.00 0.00 39.69 3.16
1976 2001 3.520290 ATTACTCGTCGCAGAAATGGA 57.480 42.857 0.00 0.00 39.69 3.41
1977 2002 3.520290 TTACTCGTCGCAGAAATGGAT 57.480 42.857 0.00 0.00 39.69 3.41
1978 2003 1.645034 ACTCGTCGCAGAAATGGATG 58.355 50.000 0.00 0.00 39.69 3.51
1979 2004 1.066858 ACTCGTCGCAGAAATGGATGT 60.067 47.619 0.00 0.00 39.69 3.06
1980 2005 2.165641 ACTCGTCGCAGAAATGGATGTA 59.834 45.455 0.00 0.00 39.69 2.29
1981 2006 3.181475 ACTCGTCGCAGAAATGGATGTAT 60.181 43.478 0.00 0.00 39.69 2.29
1982 2007 3.381045 TCGTCGCAGAAATGGATGTATC 58.619 45.455 0.00 0.00 39.69 2.24
1983 2008 3.068165 TCGTCGCAGAAATGGATGTATCT 59.932 43.478 0.00 0.00 39.69 1.98
1984 2009 4.277423 TCGTCGCAGAAATGGATGTATCTA 59.723 41.667 0.00 0.00 39.69 1.98
1985 2010 4.982295 CGTCGCAGAAATGGATGTATCTAA 59.018 41.667 0.00 0.00 39.69 2.10
1986 2011 5.462068 CGTCGCAGAAATGGATGTATCTAAA 59.538 40.000 0.00 0.00 39.69 1.85
1987 2012 6.019075 CGTCGCAGAAATGGATGTATCTAAAA 60.019 38.462 0.00 0.00 39.69 1.52
1988 2013 7.126398 GTCGCAGAAATGGATGTATCTAAAAC 58.874 38.462 0.00 0.00 39.69 2.43
1989 2014 7.011482 GTCGCAGAAATGGATGTATCTAAAACT 59.989 37.037 0.00 0.00 39.69 2.66
1990 2015 8.201464 TCGCAGAAATGGATGTATCTAAAACTA 58.799 33.333 0.00 0.00 0.00 2.24
1991 2016 8.826710 CGCAGAAATGGATGTATCTAAAACTAA 58.173 33.333 0.00 0.00 0.00 2.24
2020 2045 8.794335 ACATCTAGATACATCTATACTTGCGA 57.206 34.615 4.54 0.00 38.60 5.10
2021 2046 8.670135 ACATCTAGATACATCTATACTTGCGAC 58.330 37.037 4.54 0.00 38.60 5.19
2022 2047 8.669243 CATCTAGATACATCTATACTTGCGACA 58.331 37.037 4.54 0.00 38.60 4.35
2023 2048 8.617290 TCTAGATACATCTATACTTGCGACAA 57.383 34.615 0.00 0.00 38.60 3.18
2024 2049 8.722394 TCTAGATACATCTATACTTGCGACAAG 58.278 37.037 15.16 15.16 38.60 3.16
2025 2050 7.278461 AGATACATCTATACTTGCGACAAGT 57.722 36.000 22.53 22.53 34.85 3.16
2026 2051 8.392372 AGATACATCTATACTTGCGACAAGTA 57.608 34.615 24.52 24.52 37.18 2.24
2027 2052 8.847196 AGATACATCTATACTTGCGACAAGTAA 58.153 33.333 25.44 15.64 36.45 2.24
2028 2053 9.627395 GATACATCTATACTTGCGACAAGTAAT 57.373 33.333 25.44 16.91 36.45 1.89
2029 2054 9.982651 ATACATCTATACTTGCGACAAGTAATT 57.017 29.630 25.44 17.22 36.45 1.40
2030 2055 8.718102 ACATCTATACTTGCGACAAGTAATTT 57.282 30.769 25.44 16.74 36.45 1.82
2031 2056 8.604035 ACATCTATACTTGCGACAAGTAATTTG 58.396 33.333 25.44 21.77 42.68 2.32
2032 2057 8.817100 CATCTATACTTGCGACAAGTAATTTGA 58.183 33.333 25.44 20.91 39.21 2.69
2033 2058 8.766000 TCTATACTTGCGACAAGTAATTTGAA 57.234 30.769 25.44 11.61 39.21 2.69
2034 2059 9.210329 TCTATACTTGCGACAAGTAATTTGAAA 57.790 29.630 25.44 11.09 39.21 2.69
2035 2060 9.820229 CTATACTTGCGACAAGTAATTTGAAAA 57.180 29.630 25.44 10.57 39.21 2.29
2036 2061 8.728088 ATACTTGCGACAAGTAATTTGAAAAG 57.272 30.769 25.44 2.27 39.21 2.27
2037 2062 5.977129 ACTTGCGACAAGTAATTTGAAAAGG 59.023 36.000 19.21 0.00 39.21 3.11
2038 2063 5.759506 TGCGACAAGTAATTTGAAAAGGA 57.240 34.783 0.00 0.00 39.21 3.36
2039 2064 5.757886 TGCGACAAGTAATTTGAAAAGGAG 58.242 37.500 0.00 0.00 39.21 3.69
2040 2065 5.154222 GCGACAAGTAATTTGAAAAGGAGG 58.846 41.667 0.00 0.00 39.21 4.30
2041 2066 5.699839 CGACAAGTAATTTGAAAAGGAGGG 58.300 41.667 0.00 0.00 39.21 4.30
2042 2067 5.472137 CGACAAGTAATTTGAAAAGGAGGGA 59.528 40.000 0.00 0.00 39.21 4.20
2043 2068 6.348540 CGACAAGTAATTTGAAAAGGAGGGAG 60.349 42.308 0.00 0.00 39.21 4.30
2044 2069 6.373759 ACAAGTAATTTGAAAAGGAGGGAGT 58.626 36.000 0.00 0.00 39.21 3.85
2045 2070 7.523415 ACAAGTAATTTGAAAAGGAGGGAGTA 58.477 34.615 0.00 0.00 39.21 2.59
2046 2071 7.447545 ACAAGTAATTTGAAAAGGAGGGAGTAC 59.552 37.037 0.00 0.00 39.21 2.73
2047 2072 6.171213 AGTAATTTGAAAAGGAGGGAGTACG 58.829 40.000 0.00 0.00 0.00 3.67
2048 2073 4.635699 ATTTGAAAAGGAGGGAGTACGT 57.364 40.909 0.00 0.00 0.00 3.57
2049 2074 5.750352 ATTTGAAAAGGAGGGAGTACGTA 57.250 39.130 0.00 0.00 0.00 3.57
2050 2075 5.750352 TTTGAAAAGGAGGGAGTACGTAT 57.250 39.130 0.00 0.00 0.00 3.06
2051 2076 5.750352 TTGAAAAGGAGGGAGTACGTATT 57.250 39.130 0.00 0.00 0.00 1.89
2052 2077 5.750352 TGAAAAGGAGGGAGTACGTATTT 57.250 39.130 0.00 0.00 0.00 1.40
2053 2078 5.727434 TGAAAAGGAGGGAGTACGTATTTC 58.273 41.667 0.00 2.22 0.00 2.17
2054 2079 5.246656 TGAAAAGGAGGGAGTACGTATTTCA 59.753 40.000 9.82 9.82 0.00 2.69
2055 2080 5.952347 AAAGGAGGGAGTACGTATTTCAT 57.048 39.130 0.00 0.00 0.00 2.57
2056 2081 7.124599 TGAAAAGGAGGGAGTACGTATTTCATA 59.875 37.037 9.82 0.00 0.00 2.15
2057 2082 7.427989 AAAGGAGGGAGTACGTATTTCATAA 57.572 36.000 0.00 0.00 0.00 1.90
2058 2083 6.651975 AGGAGGGAGTACGTATTTCATAAG 57.348 41.667 0.00 0.00 0.00 1.73
2059 2084 6.134754 AGGAGGGAGTACGTATTTCATAAGT 58.865 40.000 0.00 0.00 0.00 2.24
2060 2085 7.293073 AGGAGGGAGTACGTATTTCATAAGTA 58.707 38.462 0.00 0.00 0.00 2.24
2061 2086 7.447853 AGGAGGGAGTACGTATTTCATAAGTAG 59.552 40.741 0.00 0.00 31.91 2.57
2062 2087 6.979465 AGGGAGTACGTATTTCATAAGTAGC 58.021 40.000 0.00 0.00 31.91 3.58
2063 2088 6.776603 AGGGAGTACGTATTTCATAAGTAGCT 59.223 38.462 0.00 0.00 31.91 3.32
2064 2089 7.287235 AGGGAGTACGTATTTCATAAGTAGCTT 59.713 37.037 0.00 0.00 31.91 3.74
2065 2090 7.381678 GGGAGTACGTATTTCATAAGTAGCTTG 59.618 40.741 0.00 0.00 31.91 4.01
2066 2091 8.133627 GGAGTACGTATTTCATAAGTAGCTTGA 58.866 37.037 0.00 0.00 31.91 3.02
2067 2092 9.512435 GAGTACGTATTTCATAAGTAGCTTGAA 57.488 33.333 0.00 0.00 31.91 2.69
2068 2093 9.865321 AGTACGTATTTCATAAGTAGCTTGAAA 57.135 29.630 11.78 11.78 41.90 2.69
2071 2096 9.821662 ACGTATTTCATAAGTAGCTTGAAAAAC 57.178 29.630 13.06 0.00 41.26 2.43
2072 2097 8.985694 CGTATTTCATAAGTAGCTTGAAAAACG 58.014 33.333 13.06 7.21 41.26 3.60
2075 2100 9.774742 ATTTCATAAGTAGCTTGAAAAACGATC 57.225 29.630 13.06 0.00 41.26 3.69
2076 2101 8.547967 TTCATAAGTAGCTTGAAAAACGATCT 57.452 30.769 0.00 0.00 0.00 2.75
2077 2102 8.186178 TCATAAGTAGCTTGAAAAACGATCTC 57.814 34.615 0.00 0.00 0.00 2.75
2078 2103 7.817478 TCATAAGTAGCTTGAAAAACGATCTCA 59.183 33.333 0.00 0.00 0.00 3.27
2079 2104 8.607459 CATAAGTAGCTTGAAAAACGATCTCAT 58.393 33.333 0.00 0.00 0.00 2.90
2080 2105 9.817809 ATAAGTAGCTTGAAAAACGATCTCATA 57.182 29.630 0.00 0.00 0.00 2.15
2081 2106 8.723942 AAGTAGCTTGAAAAACGATCTCATAT 57.276 30.769 0.00 0.00 0.00 1.78
2082 2107 8.723942 AGTAGCTTGAAAAACGATCTCATATT 57.276 30.769 0.00 0.00 0.00 1.28
2083 2108 9.817809 AGTAGCTTGAAAAACGATCTCATATTA 57.182 29.630 0.00 0.00 0.00 0.98
2086 2111 8.562892 AGCTTGAAAAACGATCTCATATTATGG 58.437 33.333 3.89 0.00 0.00 2.74
2087 2112 7.805071 GCTTGAAAAACGATCTCATATTATGGG 59.195 37.037 3.89 0.31 0.00 4.00
2088 2113 8.972458 TTGAAAAACGATCTCATATTATGGGA 57.028 30.769 8.66 8.66 45.30 4.37
2089 2114 8.378172 TGAAAAACGATCTCATATTATGGGAC 57.622 34.615 8.41 2.96 43.74 4.46
2090 2115 7.170828 TGAAAAACGATCTCATATTATGGGACG 59.829 37.037 18.60 18.60 43.74 4.79
2091 2116 4.720649 ACGATCTCATATTATGGGACGG 57.279 45.455 21.59 14.31 43.74 4.79
2092 2117 4.341487 ACGATCTCATATTATGGGACGGA 58.659 43.478 21.59 8.72 43.74 4.69
2093 2118 4.399618 ACGATCTCATATTATGGGACGGAG 59.600 45.833 21.59 12.17 43.74 4.63
2094 2119 4.202060 CGATCTCATATTATGGGACGGAGG 60.202 50.000 8.41 0.00 43.74 4.30
2095 2120 4.397919 TCTCATATTATGGGACGGAGGA 57.602 45.455 1.94 0.00 34.11 3.71
2096 2121 4.747583 TCTCATATTATGGGACGGAGGAA 58.252 43.478 1.94 0.00 34.11 3.36
2097 2122 5.342017 TCTCATATTATGGGACGGAGGAAT 58.658 41.667 1.94 0.00 34.11 3.01
2098 2123 5.785423 TCTCATATTATGGGACGGAGGAATT 59.215 40.000 1.94 0.00 34.11 2.17
2099 2124 6.957606 TCTCATATTATGGGACGGAGGAATTA 59.042 38.462 1.94 0.00 34.11 1.40
2100 2125 7.623677 TCTCATATTATGGGACGGAGGAATTAT 59.376 37.037 1.94 0.00 34.11 1.28
2101 2126 8.158025 TCATATTATGGGACGGAGGAATTATT 57.842 34.615 3.89 0.00 0.00 1.40
2102 2127 9.274354 TCATATTATGGGACGGAGGAATTATTA 57.726 33.333 3.89 0.00 0.00 0.98
2103 2128 9.899661 CATATTATGGGACGGAGGAATTATTAA 57.100 33.333 0.00 0.00 0.00 1.40
2105 2130 8.863872 ATTATGGGACGGAGGAATTATTAAAG 57.136 34.615 0.00 0.00 0.00 1.85
2106 2131 5.043737 TGGGACGGAGGAATTATTAAAGG 57.956 43.478 0.00 0.00 0.00 3.11
2107 2132 4.141344 TGGGACGGAGGAATTATTAAAGGG 60.141 45.833 0.00 0.00 0.00 3.95
2108 2133 3.819337 GGACGGAGGAATTATTAAAGGGC 59.181 47.826 0.00 0.00 0.00 5.19
2109 2134 4.457466 GACGGAGGAATTATTAAAGGGCA 58.543 43.478 0.00 0.00 0.00 5.36
2110 2135 4.204799 ACGGAGGAATTATTAAAGGGCAC 58.795 43.478 0.00 0.00 0.00 5.01
2111 2136 4.079958 ACGGAGGAATTATTAAAGGGCACT 60.080 41.667 0.00 0.00 0.00 4.40
2112 2137 5.131475 ACGGAGGAATTATTAAAGGGCACTA 59.869 40.000 0.00 0.00 0.00 2.74
2113 2138 6.183361 ACGGAGGAATTATTAAAGGGCACTAT 60.183 38.462 0.00 0.00 0.00 2.12
2114 2139 6.715264 CGGAGGAATTATTAAAGGGCACTATT 59.285 38.462 0.00 0.00 0.00 1.73
2115 2140 7.881232 CGGAGGAATTATTAAAGGGCACTATTA 59.119 37.037 0.00 0.00 0.00 0.98
2116 2141 9.232473 GGAGGAATTATTAAAGGGCACTATTAG 57.768 37.037 0.00 0.00 0.00 1.73
2117 2142 9.232473 GAGGAATTATTAAAGGGCACTATTAGG 57.768 37.037 0.00 0.00 0.00 2.69
2118 2143 7.670140 AGGAATTATTAAAGGGCACTATTAGGC 59.330 37.037 0.00 0.00 0.00 3.93
2119 2144 7.361799 GGAATTATTAAAGGGCACTATTAGGCG 60.362 40.741 0.00 0.00 0.00 5.52
2120 2145 2.249844 TAAAGGGCACTATTAGGCGC 57.750 50.000 0.00 0.00 42.61 6.53
2121 2146 0.465642 AAAGGGCACTATTAGGCGCC 60.466 55.000 21.89 21.89 43.22 6.53
2122 2147 2.660258 AAGGGCACTATTAGGCGCCG 62.660 60.000 23.20 9.03 45.85 6.46
2123 2148 2.665185 GGCACTATTAGGCGCCGG 60.665 66.667 23.20 12.44 34.26 6.13
2124 2149 2.108362 GCACTATTAGGCGCCGGT 59.892 61.111 23.20 13.71 0.00 5.28
2125 2150 1.954651 GCACTATTAGGCGCCGGTC 60.955 63.158 23.20 0.00 0.00 4.79
2126 2151 1.300697 CACTATTAGGCGCCGGTCC 60.301 63.158 23.20 4.86 0.00 4.46
2127 2152 1.759299 ACTATTAGGCGCCGGTCCA 60.759 57.895 23.20 4.49 0.00 4.02
2128 2153 1.300697 CTATTAGGCGCCGGTCCAC 60.301 63.158 23.20 0.00 0.00 4.02
2129 2154 2.710724 CTATTAGGCGCCGGTCCACC 62.711 65.000 23.20 6.84 0.00 4.61
2140 2165 4.892002 GTCCACCGACCCAAAGTT 57.108 55.556 0.00 0.00 32.40 2.66
2141 2166 3.105187 GTCCACCGACCCAAAGTTT 57.895 52.632 0.00 0.00 32.40 2.66
2142 2167 1.395635 GTCCACCGACCCAAAGTTTT 58.604 50.000 0.00 0.00 32.40 2.43
2143 2168 2.574450 GTCCACCGACCCAAAGTTTTA 58.426 47.619 0.00 0.00 32.40 1.52
2144 2169 2.551032 GTCCACCGACCCAAAGTTTTAG 59.449 50.000 0.00 0.00 32.40 1.85
2145 2170 2.438763 TCCACCGACCCAAAGTTTTAGA 59.561 45.455 0.00 0.00 0.00 2.10
2146 2171 3.073356 TCCACCGACCCAAAGTTTTAGAT 59.927 43.478 0.00 0.00 0.00 1.98
2147 2172 4.286549 TCCACCGACCCAAAGTTTTAGATA 59.713 41.667 0.00 0.00 0.00 1.98
2148 2173 4.393990 CCACCGACCCAAAGTTTTAGATAC 59.606 45.833 0.00 0.00 0.00 2.24
2149 2174 4.998672 CACCGACCCAAAGTTTTAGATACA 59.001 41.667 0.00 0.00 0.00 2.29
2150 2175 5.646360 CACCGACCCAAAGTTTTAGATACAT 59.354 40.000 0.00 0.00 0.00 2.29
2151 2176 6.150474 CACCGACCCAAAGTTTTAGATACATT 59.850 38.462 0.00 0.00 0.00 2.71
2152 2177 6.373495 ACCGACCCAAAGTTTTAGATACATTC 59.627 38.462 0.00 0.00 0.00 2.67
2153 2178 6.373216 CCGACCCAAAGTTTTAGATACATTCA 59.627 38.462 0.00 0.00 0.00 2.57
2154 2179 7.067008 CCGACCCAAAGTTTTAGATACATTCAT 59.933 37.037 0.00 0.00 0.00 2.57
2155 2180 8.458843 CGACCCAAAGTTTTAGATACATTCATT 58.541 33.333 0.00 0.00 0.00 2.57
2161 2186 9.559958 AAAGTTTTAGATACATTCATTTCTGCG 57.440 29.630 0.00 0.00 0.00 5.18
2162 2187 8.492673 AGTTTTAGATACATTCATTTCTGCGA 57.507 30.769 0.00 0.00 0.00 5.10
2163 2188 8.391106 AGTTTTAGATACATTCATTTCTGCGAC 58.609 33.333 0.00 0.00 0.00 5.19
2164 2189 6.510746 TTAGATACATTCATTTCTGCGACG 57.489 37.500 0.00 0.00 0.00 5.12
2165 2190 4.682787 AGATACATTCATTTCTGCGACGA 58.317 39.130 0.00 0.00 0.00 4.20
2166 2191 4.742167 AGATACATTCATTTCTGCGACGAG 59.258 41.667 0.00 0.00 0.00 4.18
2167 2192 2.688507 ACATTCATTTCTGCGACGAGT 58.311 42.857 0.00 0.00 0.00 4.18
2168 2193 3.845178 ACATTCATTTCTGCGACGAGTA 58.155 40.909 0.00 0.00 0.00 2.59
2169 2194 4.242475 ACATTCATTTCTGCGACGAGTAA 58.758 39.130 0.00 0.00 0.00 2.24
2170 2195 4.870426 ACATTCATTTCTGCGACGAGTAAT 59.130 37.500 0.00 0.00 0.00 1.89
2171 2196 5.351465 ACATTCATTTCTGCGACGAGTAATT 59.649 36.000 0.00 0.00 0.00 1.40
2172 2197 5.856126 TTCATTTCTGCGACGAGTAATTT 57.144 34.783 0.00 0.00 0.00 1.82
2173 2198 6.954616 TTCATTTCTGCGACGAGTAATTTA 57.045 33.333 0.00 0.00 0.00 1.40
2174 2199 6.569228 TCATTTCTGCGACGAGTAATTTAG 57.431 37.500 0.00 0.00 0.00 1.85
2175 2200 6.327154 TCATTTCTGCGACGAGTAATTTAGA 58.673 36.000 0.00 0.00 0.00 2.10
2176 2201 6.809689 TCATTTCTGCGACGAGTAATTTAGAA 59.190 34.615 0.00 0.00 0.00 2.10
2177 2202 6.385537 TTTCTGCGACGAGTAATTTAGAAC 57.614 37.500 0.00 0.00 0.00 3.01
2178 2203 4.093514 TCTGCGACGAGTAATTTAGAACG 58.906 43.478 0.00 0.00 0.00 3.95
2179 2204 3.173599 TGCGACGAGTAATTTAGAACGG 58.826 45.455 0.00 0.00 0.00 4.44
2180 2205 3.119884 TGCGACGAGTAATTTAGAACGGA 60.120 43.478 0.00 0.00 0.00 4.69
2181 2206 3.481388 GCGACGAGTAATTTAGAACGGAG 59.519 47.826 0.00 0.00 0.00 4.63
2182 2207 4.033684 CGACGAGTAATTTAGAACGGAGG 58.966 47.826 0.00 0.00 0.00 4.30
2183 2208 4.201851 CGACGAGTAATTTAGAACGGAGGA 60.202 45.833 0.00 0.00 0.00 3.71
2184 2209 5.644644 GACGAGTAATTTAGAACGGAGGAA 58.355 41.667 0.00 0.00 0.00 3.36
2185 2210 5.648572 ACGAGTAATTTAGAACGGAGGAAG 58.351 41.667 0.00 0.00 0.00 3.46
2201 2226 5.689068 CGGAGGAAGTACGTATTTCATAACC 59.311 44.000 26.06 18.24 0.00 2.85
2205 2230 6.532657 AGGAAGTACGTATTTCATAACCAACG 59.467 38.462 26.06 0.00 36.48 4.10
2234 2259 8.559536 GCTTGAAAAACGATCTCATATTATGGA 58.440 33.333 3.89 1.44 0.00 3.41
2241 2266 5.105716 ACGATCTCATATTATGGAACGGAGG 60.106 44.000 19.05 3.47 33.51 4.30
2253 2278 8.685838 TTATGGAACGGAGGAATTATTAAAGG 57.314 34.615 0.00 0.00 0.00 3.11
2254 2279 5.442391 TGGAACGGAGGAATTATTAAAGGG 58.558 41.667 0.00 0.00 0.00 3.95
2255 2280 4.277672 GGAACGGAGGAATTATTAAAGGGC 59.722 45.833 0.00 0.00 0.00 5.19
2256 2281 4.513406 ACGGAGGAATTATTAAAGGGCA 57.487 40.909 0.00 0.00 0.00 5.36
2257 2282 4.204799 ACGGAGGAATTATTAAAGGGCAC 58.795 43.478 0.00 0.00 0.00 5.01
2258 2283 4.079958 ACGGAGGAATTATTAAAGGGCACT 60.080 41.667 0.00 0.00 0.00 4.40
2259 2284 5.131475 ACGGAGGAATTATTAAAGGGCACTA 59.869 40.000 0.00 0.00 0.00 2.74
2260 2285 5.469084 CGGAGGAATTATTAAAGGGCACTAC 59.531 44.000 0.00 0.00 0.00 2.73
2261 2286 6.602278 GGAGGAATTATTAAAGGGCACTACT 58.398 40.000 0.00 0.00 0.00 2.57
2262 2287 7.472381 CGGAGGAATTATTAAAGGGCACTACTA 60.472 40.741 0.00 0.00 0.00 1.82
2263 2288 7.878644 GGAGGAATTATTAAAGGGCACTACTAG 59.121 40.741 0.00 0.00 0.00 2.57
2264 2289 7.746703 AGGAATTATTAAAGGGCACTACTAGG 58.253 38.462 0.00 0.00 0.00 3.02
2265 2290 6.430308 GGAATTATTAAAGGGCACTACTAGGC 59.570 42.308 0.00 0.00 0.00 3.93
2266 2291 2.973694 TTAAAGGGCACTACTAGGCG 57.026 50.000 0.00 0.00 0.00 5.52
2267 2292 0.462789 TAAAGGGCACTACTAGGCGC 59.537 55.000 0.00 0.00 42.61 6.53
2268 2293 2.253403 AAAGGGCACTACTAGGCGCC 62.253 60.000 21.89 21.89 43.22 6.53
2269 2294 4.587189 GGGCACTACTAGGCGCCG 62.587 72.222 23.20 10.77 45.85 6.46
2270 2295 4.587189 GGCACTACTAGGCGCCGG 62.587 72.222 23.20 20.35 34.26 6.13
2271 2296 3.834799 GCACTACTAGGCGCCGGT 61.835 66.667 25.98 25.98 0.00 5.28
2272 2297 2.412112 CACTACTAGGCGCCGGTC 59.588 66.667 26.37 2.19 0.00 4.79
2273 2298 2.832201 ACTACTAGGCGCCGGTCC 60.832 66.667 26.37 4.86 0.00 4.46
2274 2299 3.962421 CTACTAGGCGCCGGTCCG 61.962 72.222 26.37 16.94 0.00 4.79
2286 2311 2.360726 GGTCCGCCGGTCCAAATT 60.361 61.111 14.73 0.00 31.33 1.82
2287 2312 1.974875 GGTCCGCCGGTCCAAATTT 60.975 57.895 14.73 0.00 31.33 1.82
2288 2313 1.211709 GTCCGCCGGTCCAAATTTG 59.788 57.895 11.40 11.40 0.00 2.32
2297 2322 2.571231 CCAAATTTGGGCCGGTCG 59.429 61.111 26.87 1.10 44.70 4.79
2298 2323 2.571231 CAAATTTGGGCCGGTCGG 59.429 61.111 10.49 4.85 38.57 4.79
2299 2324 1.974343 CAAATTTGGGCCGGTCGGA 60.974 57.895 14.15 0.00 37.50 4.55
2300 2325 1.974875 AAATTTGGGCCGGTCGGAC 60.975 57.895 14.15 10.58 44.33 4.79
2320 2345 4.196965 GGGACGTCGGATGAAACC 57.803 61.111 9.92 0.00 0.00 3.27
2329 2354 2.174060 CGGATGAAACCGCTTTTAGC 57.826 50.000 0.00 0.00 46.20 3.09
2330 2355 1.202143 CGGATGAAACCGCTTTTAGCC 60.202 52.381 0.00 0.00 46.20 3.93
2331 2356 1.202143 GGATGAAACCGCTTTTAGCCG 60.202 52.381 0.00 0.00 38.18 5.52
2332 2357 1.467342 GATGAAACCGCTTTTAGCCGT 59.533 47.619 0.00 0.00 38.18 5.68
2333 2358 1.310904 TGAAACCGCTTTTAGCCGTT 58.689 45.000 0.00 0.00 42.77 4.44
2334 2359 2.492012 TGAAACCGCTTTTAGCCGTTA 58.508 42.857 5.97 0.00 40.72 3.18
2335 2360 2.481185 TGAAACCGCTTTTAGCCGTTAG 59.519 45.455 5.97 0.00 40.72 2.34
2336 2361 2.460757 AACCGCTTTTAGCCGTTAGA 57.539 45.000 4.06 0.00 40.03 2.10
2337 2362 2.685850 ACCGCTTTTAGCCGTTAGAT 57.314 45.000 0.00 0.00 38.18 1.98
2338 2363 3.806625 ACCGCTTTTAGCCGTTAGATA 57.193 42.857 0.00 0.00 38.18 1.98
2339 2364 3.451526 ACCGCTTTTAGCCGTTAGATAC 58.548 45.455 0.00 0.00 38.18 2.24
2340 2365 3.119029 ACCGCTTTTAGCCGTTAGATACA 60.119 43.478 0.00 0.00 38.18 2.29
2341 2366 3.489785 CCGCTTTTAGCCGTTAGATACAG 59.510 47.826 0.00 0.00 38.18 2.74
2342 2367 3.489785 CGCTTTTAGCCGTTAGATACAGG 59.510 47.826 0.00 0.00 38.18 4.00
2343 2368 4.690122 GCTTTTAGCCGTTAGATACAGGA 58.310 43.478 0.00 0.00 34.48 3.86
2344 2369 4.507021 GCTTTTAGCCGTTAGATACAGGAC 59.493 45.833 0.00 0.00 34.48 3.85
2345 2370 4.660789 TTTAGCCGTTAGATACAGGACC 57.339 45.455 0.00 0.00 0.00 4.46
2346 2371 1.411041 AGCCGTTAGATACAGGACCC 58.589 55.000 0.00 0.00 0.00 4.46
2347 2372 1.063114 AGCCGTTAGATACAGGACCCT 60.063 52.381 0.00 0.00 0.00 4.34
2348 2373 1.761198 GCCGTTAGATACAGGACCCTT 59.239 52.381 0.00 0.00 0.00 3.95
2349 2374 2.169978 GCCGTTAGATACAGGACCCTTT 59.830 50.000 0.00 0.00 0.00 3.11
2350 2375 3.740452 GCCGTTAGATACAGGACCCTTTC 60.740 52.174 0.00 0.00 0.00 2.62
2351 2376 3.490419 CCGTTAGATACAGGACCCTTTCG 60.490 52.174 0.00 0.00 0.00 3.46
2352 2377 3.129988 CGTTAGATACAGGACCCTTTCGT 59.870 47.826 0.00 0.00 0.00 3.85
2353 2378 4.680702 GTTAGATACAGGACCCTTTCGTC 58.319 47.826 0.00 0.00 0.00 4.20
2358 2383 2.350134 GGACCCTTTCGTCCCACC 59.650 66.667 0.00 0.00 45.72 4.61
2359 2384 2.522367 GGACCCTTTCGTCCCACCA 61.522 63.158 0.00 0.00 45.72 4.17
2360 2385 1.683441 GACCCTTTCGTCCCACCAT 59.317 57.895 0.00 0.00 0.00 3.55
2361 2386 0.676782 GACCCTTTCGTCCCACCATG 60.677 60.000 0.00 0.00 0.00 3.66
2362 2387 2.046285 CCCTTTCGTCCCACCATGC 61.046 63.158 0.00 0.00 0.00 4.06
2363 2388 2.046285 CCTTTCGTCCCACCATGCC 61.046 63.158 0.00 0.00 0.00 4.40
2364 2389 2.359354 TTTCGTCCCACCATGCCG 60.359 61.111 0.00 0.00 0.00 5.69
2365 2390 3.185299 TTTCGTCCCACCATGCCGT 62.185 57.895 0.00 0.00 0.00 5.68
2366 2391 2.684192 TTTCGTCCCACCATGCCGTT 62.684 55.000 0.00 0.00 0.00 4.44
2367 2392 2.671619 CGTCCCACCATGCCGTTT 60.672 61.111 0.00 0.00 0.00 3.60
2368 2393 1.376166 CGTCCCACCATGCCGTTTA 60.376 57.895 0.00 0.00 0.00 2.01
2369 2394 1.641123 CGTCCCACCATGCCGTTTAC 61.641 60.000 0.00 0.00 0.00 2.01
2370 2395 0.322187 GTCCCACCATGCCGTTTACT 60.322 55.000 0.00 0.00 0.00 2.24
2371 2396 0.402504 TCCCACCATGCCGTTTACTT 59.597 50.000 0.00 0.00 0.00 2.24
2372 2397 1.202952 TCCCACCATGCCGTTTACTTT 60.203 47.619 0.00 0.00 0.00 2.66
2373 2398 1.616374 CCCACCATGCCGTTTACTTTT 59.384 47.619 0.00 0.00 0.00 2.27
2374 2399 2.352323 CCCACCATGCCGTTTACTTTTC 60.352 50.000 0.00 0.00 0.00 2.29
2375 2400 2.556622 CCACCATGCCGTTTACTTTTCT 59.443 45.455 0.00 0.00 0.00 2.52
2376 2401 3.005367 CCACCATGCCGTTTACTTTTCTT 59.995 43.478 0.00 0.00 0.00 2.52
2377 2402 4.226761 CACCATGCCGTTTACTTTTCTTC 58.773 43.478 0.00 0.00 0.00 2.87
2378 2403 3.254903 ACCATGCCGTTTACTTTTCTTCC 59.745 43.478 0.00 0.00 0.00 3.46
2379 2404 3.366985 CCATGCCGTTTACTTTTCTTCCC 60.367 47.826 0.00 0.00 0.00 3.97
2380 2405 2.232399 TGCCGTTTACTTTTCTTCCCC 58.768 47.619 0.00 0.00 0.00 4.81
2381 2406 1.542915 GCCGTTTACTTTTCTTCCCCC 59.457 52.381 0.00 0.00 0.00 5.40
2382 2407 2.816712 GCCGTTTACTTTTCTTCCCCCT 60.817 50.000 0.00 0.00 0.00 4.79
2383 2408 3.559811 GCCGTTTACTTTTCTTCCCCCTA 60.560 47.826 0.00 0.00 0.00 3.53
2384 2409 4.005650 CCGTTTACTTTTCTTCCCCCTAC 58.994 47.826 0.00 0.00 0.00 3.18
2385 2410 4.505390 CCGTTTACTTTTCTTCCCCCTACA 60.505 45.833 0.00 0.00 0.00 2.74
2386 2411 5.065235 CGTTTACTTTTCTTCCCCCTACAA 58.935 41.667 0.00 0.00 0.00 2.41
2387 2412 5.532032 CGTTTACTTTTCTTCCCCCTACAAA 59.468 40.000 0.00 0.00 0.00 2.83
2388 2413 6.208007 CGTTTACTTTTCTTCCCCCTACAAAT 59.792 38.462 0.00 0.00 0.00 2.32
2389 2414 7.574404 CGTTTACTTTTCTTCCCCCTACAAATC 60.574 40.741 0.00 0.00 0.00 2.17
2390 2415 5.333566 ACTTTTCTTCCCCCTACAAATCA 57.666 39.130 0.00 0.00 0.00 2.57
2391 2416 5.077564 ACTTTTCTTCCCCCTACAAATCAC 58.922 41.667 0.00 0.00 0.00 3.06
2392 2417 3.343941 TTCTTCCCCCTACAAATCACG 57.656 47.619 0.00 0.00 0.00 4.35
2393 2418 1.557832 TCTTCCCCCTACAAATCACGG 59.442 52.381 0.00 0.00 0.00 4.94
2394 2419 0.621609 TTCCCCCTACAAATCACGGG 59.378 55.000 0.00 0.00 36.42 5.28
2395 2420 0.252789 TCCCCCTACAAATCACGGGA 60.253 55.000 0.00 0.00 39.08 5.14
2396 2421 0.180406 CCCCCTACAAATCACGGGAG 59.820 60.000 0.00 0.00 39.08 4.30
2397 2422 0.463833 CCCCTACAAATCACGGGAGC 60.464 60.000 0.00 0.00 39.08 4.70
2398 2423 0.251916 CCCTACAAATCACGGGAGCA 59.748 55.000 0.00 0.00 39.08 4.26
2399 2424 1.369625 CCTACAAATCACGGGAGCAC 58.630 55.000 0.00 0.00 0.00 4.40
2400 2425 0.999406 CTACAAATCACGGGAGCACG 59.001 55.000 0.00 0.00 40.31 5.34
2401 2426 1.017177 TACAAATCACGGGAGCACGC 61.017 55.000 0.00 0.00 37.37 5.34
2402 2427 2.031919 AAATCACGGGAGCACGCA 59.968 55.556 0.00 0.00 37.37 5.24
2403 2428 2.325082 AAATCACGGGAGCACGCAC 61.325 57.895 0.00 0.00 37.37 5.34
2404 2429 3.529341 AATCACGGGAGCACGCACA 62.529 57.895 0.00 0.00 37.37 4.57
2405 2430 3.939837 ATCACGGGAGCACGCACAG 62.940 63.158 0.00 0.00 37.37 3.66
2433 2458 3.809013 GCCATGGACGGGGGACAT 61.809 66.667 18.40 0.00 0.00 3.06
2434 2459 2.192979 CCATGGACGGGGGACATG 59.807 66.667 5.56 0.00 41.15 3.21
2435 2460 2.374525 CCATGGACGGGGGACATGA 61.375 63.158 5.56 0.00 43.46 3.07
2436 2461 1.153168 CATGGACGGGGGACATGAC 60.153 63.158 0.00 0.00 43.46 3.06
2437 2462 2.375345 ATGGACGGGGGACATGACC 61.375 63.158 5.56 5.56 0.00 4.02
2444 2469 4.090588 GGGACATGACCCGCCGAA 62.091 66.667 17.66 0.00 40.49 4.30
2445 2470 2.189521 GGACATGACCCGCCGAAT 59.810 61.111 0.00 0.00 0.00 3.34
2446 2471 1.887707 GGACATGACCCGCCGAATC 60.888 63.158 0.00 0.00 0.00 2.52
2447 2472 1.144057 GACATGACCCGCCGAATCT 59.856 57.895 0.00 0.00 0.00 2.40
2448 2473 0.876342 GACATGACCCGCCGAATCTC 60.876 60.000 0.00 0.00 0.00 2.75
2449 2474 1.595382 CATGACCCGCCGAATCTCC 60.595 63.158 0.00 0.00 0.00 3.71
2450 2475 3.151958 ATGACCCGCCGAATCTCCG 62.152 63.158 0.00 0.00 0.00 4.63
2453 2478 4.951963 CCCGCCGAATCTCCGCTC 62.952 72.222 0.00 0.00 0.00 5.03
2456 2481 4.577246 GCCGAATCTCCGCTCGCT 62.577 66.667 0.00 0.00 33.70 4.93
2457 2482 2.354072 CCGAATCTCCGCTCGCTC 60.354 66.667 0.00 0.00 33.70 5.03
2458 2483 2.723995 CGAATCTCCGCTCGCTCG 60.724 66.667 0.00 0.00 0.00 5.03
2459 2484 3.027449 GAATCTCCGCTCGCTCGC 61.027 66.667 0.00 0.00 0.00 5.03
2460 2485 4.577246 AATCTCCGCTCGCTCGCC 62.577 66.667 0.00 0.00 0.00 5.54
2468 2493 4.933064 CTCGCTCGCCGGATCACC 62.933 72.222 5.05 0.00 37.59 4.02
2478 2503 4.593864 GGATCACCGCCGCCTCTC 62.594 72.222 0.00 0.00 0.00 3.20
2479 2504 3.532155 GATCACCGCCGCCTCTCT 61.532 66.667 0.00 0.00 0.00 3.10
2480 2505 3.492311 GATCACCGCCGCCTCTCTC 62.492 68.421 0.00 0.00 0.00 3.20
2485 2510 4.504916 CGCCGCCTCTCTCCACAG 62.505 72.222 0.00 0.00 0.00 3.66
2486 2511 4.828925 GCCGCCTCTCTCCACAGC 62.829 72.222 0.00 0.00 0.00 4.40
2487 2512 3.073735 CCGCCTCTCTCCACAGCT 61.074 66.667 0.00 0.00 0.00 4.24
2488 2513 2.493973 CGCCTCTCTCCACAGCTC 59.506 66.667 0.00 0.00 0.00 4.09
2489 2514 2.493973 GCCTCTCTCCACAGCTCG 59.506 66.667 0.00 0.00 0.00 5.03
2490 2515 2.049185 GCCTCTCTCCACAGCTCGA 61.049 63.158 0.00 0.00 0.00 4.04
2491 2516 1.806568 CCTCTCTCCACAGCTCGAC 59.193 63.158 0.00 0.00 0.00 4.20
2492 2517 0.679640 CCTCTCTCCACAGCTCGACT 60.680 60.000 0.00 0.00 0.00 4.18
2493 2518 1.173043 CTCTCTCCACAGCTCGACTT 58.827 55.000 0.00 0.00 0.00 3.01
2494 2519 1.132262 CTCTCTCCACAGCTCGACTTC 59.868 57.143 0.00 0.00 0.00 3.01
2495 2520 1.173043 CTCTCCACAGCTCGACTTCT 58.827 55.000 0.00 0.00 0.00 2.85
2496 2521 1.132262 CTCTCCACAGCTCGACTTCTC 59.868 57.143 0.00 0.00 0.00 2.87
2497 2522 0.172352 CTCCACAGCTCGACTTCTCC 59.828 60.000 0.00 0.00 0.00 3.71
2498 2523 0.539669 TCCACAGCTCGACTTCTCCA 60.540 55.000 0.00 0.00 0.00 3.86
2499 2524 0.534412 CCACAGCTCGACTTCTCCAT 59.466 55.000 0.00 0.00 0.00 3.41
2500 2525 1.470632 CCACAGCTCGACTTCTCCATC 60.471 57.143 0.00 0.00 0.00 3.51
2501 2526 0.453793 ACAGCTCGACTTCTCCATCG 59.546 55.000 0.00 0.00 39.72 3.84
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
139 140 3.528370 CCGTAGGCCTCCTCCGTG 61.528 72.222 9.68 0.00 46.14 4.94
169 170 2.034687 ACCCACTGCAGCATGTCC 59.965 61.111 15.27 0.00 39.31 4.02
193 194 2.293399 GGTGGTGTTGAAGTCCATGTTC 59.707 50.000 0.00 0.00 33.68 3.18
458 459 2.342179 GCTCCACTGCTTCTTGTAGAC 58.658 52.381 0.00 0.00 32.51 2.59
689 713 6.646240 GGCAATGGAATCAAAACGCATAATAT 59.354 34.615 0.00 0.00 0.00 1.28
693 717 3.446873 AGGCAATGGAATCAAAACGCATA 59.553 39.130 0.00 0.00 0.00 3.14
711 735 1.073763 TGGCAGCTTCTTCTTAAGGCA 59.926 47.619 1.85 0.00 0.00 4.75
938 962 7.613411 AGGGTATAGGCCTAATTAAGTACGTAG 59.387 40.741 18.42 0.00 0.00 3.51
954 978 7.612633 GCCTCAGTATATATAGAGGGTATAGGC 59.387 44.444 23.90 13.46 46.08 3.93
1025 1049 3.862642 GCGGTGTGGGAGATTATGAGATC 60.863 52.174 0.00 0.00 0.00 2.75
1047 1071 3.131396 CCCCCTTCATATTTTCGACGAG 58.869 50.000 0.00 0.00 0.00 4.18
1263 1287 2.423577 GAGACCGCCATAGTTGTGTTT 58.576 47.619 0.00 0.00 0.00 2.83
1329 1353 5.713822 ATTCGCCTTTAGACGTACAATTC 57.286 39.130 0.00 0.00 0.00 2.17
1338 1362 2.289565 CCCCAGAATTCGCCTTTAGAC 58.710 52.381 0.00 0.00 0.00 2.59
1347 1371 0.536006 GATCCCAGCCCCAGAATTCG 60.536 60.000 0.00 0.00 0.00 3.34
1530 1554 9.760077 ATAGTTATTATACACTCGTGAAAAGGG 57.240 33.333 3.74 0.00 0.00 3.95
1621 1646 9.187996 TGCATTAAAATTCAACTCATGATCCTA 57.812 29.630 0.00 0.00 38.03 2.94
1622 1647 8.070034 TGCATTAAAATTCAACTCATGATCCT 57.930 30.769 0.00 0.00 38.03 3.24
1623 1648 8.192774 TCTGCATTAAAATTCAACTCATGATCC 58.807 33.333 0.00 0.00 38.03 3.36
1624 1649 9.577110 TTCTGCATTAAAATTCAACTCATGATC 57.423 29.630 0.00 0.00 38.03 2.92
1625 1650 9.932207 TTTCTGCATTAAAATTCAACTCATGAT 57.068 25.926 0.00 0.00 38.03 2.45
1626 1651 9.761504 TTTTCTGCATTAAAATTCAACTCATGA 57.238 25.926 0.00 0.00 35.85 3.07
1662 1687 9.851686 ATTTGATATTGCCTTAGTATGTCAGAA 57.148 29.630 0.00 0.00 0.00 3.02
1722 1747 4.100963 TCGAGTCATGCCACCAATTAGTAT 59.899 41.667 0.00 0.00 0.00 2.12
1737 1762 6.734137 TGCAAAAACAATAAGTTCGAGTCAT 58.266 32.000 0.00 0.00 40.26 3.06
1738 1763 6.125327 TGCAAAAACAATAAGTTCGAGTCA 57.875 33.333 0.00 0.00 40.26 3.41
1792 1817 2.749621 AGCCATGAATTCAACGGACTTC 59.250 45.455 24.42 11.13 34.33 3.01
1855 1880 3.335786 GCACATTTATGCTCTGCTCAG 57.664 47.619 0.00 0.00 42.62 3.35
1867 1892 5.034797 CGAGTCAGATAACGAGCACATTTA 58.965 41.667 0.00 0.00 0.00 1.40
1874 1899 3.760537 AGAAACGAGTCAGATAACGAGC 58.239 45.455 0.00 0.00 0.00 5.03
1918 1943 8.192110 GGAGTAATATATAAGCCTCTACACTGC 58.808 40.741 0.00 0.00 0.00 4.40
1930 1955 7.713734 TGGAACGGAGGGAGTAATATATAAG 57.286 40.000 0.00 0.00 0.00 1.73
1935 1960 5.906772 ATTTGGAACGGAGGGAGTAATAT 57.093 39.130 0.00 0.00 0.00 1.28
1939 1964 4.098894 AGTAATTTGGAACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
1940 1965 2.910977 AGTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
1941 1966 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
1942 1967 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
1943 1968 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
1944 1969 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
1945 1970 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
1946 1971 2.598589 CGACGAGTAATTTGGAACGGA 58.401 47.619 0.00 0.00 0.00 4.69
1947 1972 1.060122 GCGACGAGTAATTTGGAACGG 59.940 52.381 0.00 0.00 0.00 4.44
1948 1973 1.722464 TGCGACGAGTAATTTGGAACG 59.278 47.619 0.00 0.00 0.00 3.95
1949 1974 2.991190 TCTGCGACGAGTAATTTGGAAC 59.009 45.455 0.00 0.00 0.00 3.62
1950 1975 3.306917 TCTGCGACGAGTAATTTGGAA 57.693 42.857 0.00 0.00 0.00 3.53
1951 1976 3.306917 TTCTGCGACGAGTAATTTGGA 57.693 42.857 0.00 0.00 0.00 3.53
1952 1977 4.334443 CATTTCTGCGACGAGTAATTTGG 58.666 43.478 0.00 0.00 0.00 3.28
1953 1978 4.092821 TCCATTTCTGCGACGAGTAATTTG 59.907 41.667 0.00 0.00 0.00 2.32
1954 1979 4.250464 TCCATTTCTGCGACGAGTAATTT 58.750 39.130 0.00 0.00 0.00 1.82
1955 1980 3.857052 TCCATTTCTGCGACGAGTAATT 58.143 40.909 0.00 0.00 0.00 1.40
1956 1981 3.520290 TCCATTTCTGCGACGAGTAAT 57.480 42.857 0.00 0.00 0.00 1.89
1957 1982 3.186909 CATCCATTTCTGCGACGAGTAA 58.813 45.455 0.00 0.00 0.00 2.24
1958 1983 2.165641 ACATCCATTTCTGCGACGAGTA 59.834 45.455 0.00 0.00 0.00 2.59
1959 1984 1.066858 ACATCCATTTCTGCGACGAGT 60.067 47.619 0.00 0.00 0.00 4.18
1960 1985 1.645034 ACATCCATTTCTGCGACGAG 58.355 50.000 0.00 0.00 0.00 4.18
1961 1986 2.951457 TACATCCATTTCTGCGACGA 57.049 45.000 0.00 0.00 0.00 4.20
1962 1987 3.384668 AGATACATCCATTTCTGCGACG 58.615 45.455 0.00 0.00 0.00 5.12
1963 1988 6.844696 TTTAGATACATCCATTTCTGCGAC 57.155 37.500 0.00 0.00 0.00 5.19
1964 1989 7.047891 AGTTTTAGATACATCCATTTCTGCGA 58.952 34.615 0.00 0.00 0.00 5.10
1965 1990 7.251704 AGTTTTAGATACATCCATTTCTGCG 57.748 36.000 0.00 0.00 0.00 5.18
1994 2019 9.886132 TCGCAAGTATAGATGTATCTAGATGTA 57.114 33.333 15.79 4.44 39.75 2.29
1995 2020 8.670135 GTCGCAAGTATAGATGTATCTAGATGT 58.330 37.037 15.79 1.25 39.75 3.06
1996 2021 8.669243 TGTCGCAAGTATAGATGTATCTAGATG 58.331 37.037 15.79 0.00 39.75 2.90
1997 2022 8.794335 TGTCGCAAGTATAGATGTATCTAGAT 57.206 34.615 10.73 10.73 39.75 1.98
1998 2023 8.617290 TTGTCGCAAGTATAGATGTATCTAGA 57.383 34.615 7.57 0.00 39.75 2.43
1999 2024 8.508062 ACTTGTCGCAAGTATAGATGTATCTAG 58.492 37.037 19.21 0.00 39.75 2.43
2000 2025 8.392372 ACTTGTCGCAAGTATAGATGTATCTA 57.608 34.615 19.21 4.22 40.29 1.98
2001 2026 7.278461 ACTTGTCGCAAGTATAGATGTATCT 57.722 36.000 19.21 0.00 38.75 1.98
2002 2027 9.627395 ATTACTTGTCGCAAGTATAGATGTATC 57.373 33.333 23.59 0.00 33.27 2.24
2003 2028 9.982651 AATTACTTGTCGCAAGTATAGATGTAT 57.017 29.630 23.59 14.31 33.27 2.29
2004 2029 9.811995 AAATTACTTGTCGCAAGTATAGATGTA 57.188 29.630 23.59 13.16 33.27 2.29
2005 2030 8.604035 CAAATTACTTGTCGCAAGTATAGATGT 58.396 33.333 23.59 12.80 33.27 3.06
2006 2031 8.817100 TCAAATTACTTGTCGCAAGTATAGATG 58.183 33.333 23.59 19.89 36.34 2.90
2007 2032 8.942338 TCAAATTACTTGTCGCAAGTATAGAT 57.058 30.769 23.59 15.77 36.34 1.98
2008 2033 8.766000 TTCAAATTACTTGTCGCAAGTATAGA 57.234 30.769 23.59 17.80 36.34 1.98
2009 2034 9.820229 TTTTCAAATTACTTGTCGCAAGTATAG 57.180 29.630 23.59 16.53 36.34 1.31
2010 2035 9.820229 CTTTTCAAATTACTTGTCGCAAGTATA 57.180 29.630 23.59 17.37 36.34 1.47
2011 2036 7.807907 CCTTTTCAAATTACTTGTCGCAAGTAT 59.192 33.333 23.59 13.19 36.34 2.12
2012 2037 7.012515 TCCTTTTCAAATTACTTGTCGCAAGTA 59.987 33.333 20.95 20.95 36.34 2.24
2013 2038 5.977129 CCTTTTCAAATTACTTGTCGCAAGT 59.023 36.000 22.53 22.53 36.34 3.16
2014 2039 6.205784 TCCTTTTCAAATTACTTGTCGCAAG 58.794 36.000 15.16 15.16 36.34 4.01
2015 2040 6.137794 TCCTTTTCAAATTACTTGTCGCAA 57.862 33.333 0.00 0.00 36.34 4.85
2016 2041 5.278266 CCTCCTTTTCAAATTACTTGTCGCA 60.278 40.000 0.00 0.00 36.34 5.10
2017 2042 5.154222 CCTCCTTTTCAAATTACTTGTCGC 58.846 41.667 0.00 0.00 36.34 5.19
2018 2043 5.472137 TCCCTCCTTTTCAAATTACTTGTCG 59.528 40.000 0.00 0.00 36.34 4.35
2019 2044 6.490381 ACTCCCTCCTTTTCAAATTACTTGTC 59.510 38.462 0.00 0.00 36.34 3.18
2020 2045 6.373759 ACTCCCTCCTTTTCAAATTACTTGT 58.626 36.000 0.00 0.00 36.34 3.16
2021 2046 6.901081 ACTCCCTCCTTTTCAAATTACTTG 57.099 37.500 0.00 0.00 36.25 3.16
2022 2047 6.653740 CGTACTCCCTCCTTTTCAAATTACTT 59.346 38.462 0.00 0.00 0.00 2.24
2023 2048 6.171213 CGTACTCCCTCCTTTTCAAATTACT 58.829 40.000 0.00 0.00 0.00 2.24
2024 2049 5.936372 ACGTACTCCCTCCTTTTCAAATTAC 59.064 40.000 0.00 0.00 0.00 1.89
2025 2050 6.117975 ACGTACTCCCTCCTTTTCAAATTA 57.882 37.500 0.00 0.00 0.00 1.40
2026 2051 4.981812 ACGTACTCCCTCCTTTTCAAATT 58.018 39.130 0.00 0.00 0.00 1.82
2027 2052 4.635699 ACGTACTCCCTCCTTTTCAAAT 57.364 40.909 0.00 0.00 0.00 2.32
2028 2053 5.750352 ATACGTACTCCCTCCTTTTCAAA 57.250 39.130 0.00 0.00 0.00 2.69
2029 2054 5.750352 AATACGTACTCCCTCCTTTTCAA 57.250 39.130 0.00 0.00 0.00 2.69
2030 2055 5.246656 TGAAATACGTACTCCCTCCTTTTCA 59.753 40.000 0.00 4.32 0.00 2.69
2031 2056 5.727434 TGAAATACGTACTCCCTCCTTTTC 58.273 41.667 0.00 1.56 0.00 2.29
2032 2057 5.750352 TGAAATACGTACTCCCTCCTTTT 57.250 39.130 0.00 0.00 0.00 2.27
2033 2058 5.952347 ATGAAATACGTACTCCCTCCTTT 57.048 39.130 0.00 0.00 0.00 3.11
2034 2059 6.610425 ACTTATGAAATACGTACTCCCTCCTT 59.390 38.462 0.00 0.00 28.50 3.36
2035 2060 6.134754 ACTTATGAAATACGTACTCCCTCCT 58.865 40.000 0.00 0.00 28.50 3.69
2036 2061 6.402456 ACTTATGAAATACGTACTCCCTCC 57.598 41.667 0.00 0.00 28.50 4.30
2037 2062 7.040548 AGCTACTTATGAAATACGTACTCCCTC 60.041 40.741 0.00 0.00 33.03 4.30
2038 2063 6.776603 AGCTACTTATGAAATACGTACTCCCT 59.223 38.462 0.00 0.00 33.03 4.20
2039 2064 6.979465 AGCTACTTATGAAATACGTACTCCC 58.021 40.000 0.00 0.00 33.03 4.30
2040 2065 8.133627 TCAAGCTACTTATGAAATACGTACTCC 58.866 37.037 0.00 0.00 33.03 3.85
2041 2066 9.512435 TTCAAGCTACTTATGAAATACGTACTC 57.488 33.333 0.00 0.00 33.03 2.59
2042 2067 9.865321 TTTCAAGCTACTTATGAAATACGTACT 57.135 29.630 6.45 0.00 37.95 2.73
2045 2070 9.821662 GTTTTTCAAGCTACTTATGAAATACGT 57.178 29.630 10.49 0.00 41.26 3.57
2049 2074 9.774742 GATCGTTTTTCAAGCTACTTATGAAAT 57.225 29.630 10.49 0.00 41.26 2.17
2050 2075 8.999431 AGATCGTTTTTCAAGCTACTTATGAAA 58.001 29.630 6.45 6.45 40.29 2.69
2051 2076 8.547967 AGATCGTTTTTCAAGCTACTTATGAA 57.452 30.769 0.00 0.00 0.00 2.57
2052 2077 7.817478 TGAGATCGTTTTTCAAGCTACTTATGA 59.183 33.333 0.00 0.00 0.00 2.15
2053 2078 7.963981 TGAGATCGTTTTTCAAGCTACTTATG 58.036 34.615 0.00 0.00 0.00 1.90
2054 2079 8.723942 ATGAGATCGTTTTTCAAGCTACTTAT 57.276 30.769 0.00 0.00 0.00 1.73
2055 2080 9.817809 ATATGAGATCGTTTTTCAAGCTACTTA 57.182 29.630 0.00 0.00 0.00 2.24
2056 2081 8.723942 ATATGAGATCGTTTTTCAAGCTACTT 57.276 30.769 0.00 0.00 0.00 2.24
2057 2082 8.723942 AATATGAGATCGTTTTTCAAGCTACT 57.276 30.769 0.00 0.00 0.00 2.57
2060 2085 8.562892 CCATAATATGAGATCGTTTTTCAAGCT 58.437 33.333 1.10 0.00 0.00 3.74
2061 2086 7.805071 CCCATAATATGAGATCGTTTTTCAAGC 59.195 37.037 1.10 0.00 0.00 4.01
2062 2087 9.056005 TCCCATAATATGAGATCGTTTTTCAAG 57.944 33.333 1.10 0.00 0.00 3.02
2063 2088 8.836413 GTCCCATAATATGAGATCGTTTTTCAA 58.164 33.333 1.10 0.00 0.00 2.69
2064 2089 7.170828 CGTCCCATAATATGAGATCGTTTTTCA 59.829 37.037 1.10 0.00 0.00 2.69
2065 2090 7.360101 CCGTCCCATAATATGAGATCGTTTTTC 60.360 40.741 1.10 0.00 0.00 2.29
2066 2091 6.426937 CCGTCCCATAATATGAGATCGTTTTT 59.573 38.462 1.10 0.00 0.00 1.94
2067 2092 5.932303 CCGTCCCATAATATGAGATCGTTTT 59.068 40.000 1.10 0.00 0.00 2.43
2068 2093 5.245301 TCCGTCCCATAATATGAGATCGTTT 59.755 40.000 1.10 0.00 0.00 3.60
2069 2094 4.770531 TCCGTCCCATAATATGAGATCGTT 59.229 41.667 1.10 0.00 0.00 3.85
2070 2095 4.341487 TCCGTCCCATAATATGAGATCGT 58.659 43.478 1.10 0.00 0.00 3.73
2071 2096 4.202060 CCTCCGTCCCATAATATGAGATCG 60.202 50.000 1.10 1.62 0.00 3.69
2072 2097 4.956700 TCCTCCGTCCCATAATATGAGATC 59.043 45.833 1.10 0.00 0.00 2.75
2073 2098 4.947883 TCCTCCGTCCCATAATATGAGAT 58.052 43.478 1.10 0.00 0.00 2.75
2074 2099 4.397919 TCCTCCGTCCCATAATATGAGA 57.602 45.455 1.10 0.00 0.00 3.27
2075 2100 5.683876 ATTCCTCCGTCCCATAATATGAG 57.316 43.478 1.10 0.00 0.00 2.90
2076 2101 7.749377 ATAATTCCTCCGTCCCATAATATGA 57.251 36.000 1.10 0.00 0.00 2.15
2077 2102 9.899661 TTAATAATTCCTCCGTCCCATAATATG 57.100 33.333 0.00 0.00 0.00 1.78
2079 2104 9.953565 CTTTAATAATTCCTCCGTCCCATAATA 57.046 33.333 0.00 0.00 0.00 0.98
2080 2105 7.888546 CCTTTAATAATTCCTCCGTCCCATAAT 59.111 37.037 0.00 0.00 0.00 1.28
2081 2106 7.228590 CCTTTAATAATTCCTCCGTCCCATAA 58.771 38.462 0.00 0.00 0.00 1.90
2082 2107 6.240060 CCCTTTAATAATTCCTCCGTCCCATA 60.240 42.308 0.00 0.00 0.00 2.74
2083 2108 5.457633 CCCTTTAATAATTCCTCCGTCCCAT 60.458 44.000 0.00 0.00 0.00 4.00
2084 2109 4.141344 CCCTTTAATAATTCCTCCGTCCCA 60.141 45.833 0.00 0.00 0.00 4.37
2085 2110 4.395625 CCCTTTAATAATTCCTCCGTCCC 58.604 47.826 0.00 0.00 0.00 4.46
2086 2111 3.819337 GCCCTTTAATAATTCCTCCGTCC 59.181 47.826 0.00 0.00 0.00 4.79
2087 2112 4.275196 GTGCCCTTTAATAATTCCTCCGTC 59.725 45.833 0.00 0.00 0.00 4.79
2088 2113 4.079958 AGTGCCCTTTAATAATTCCTCCGT 60.080 41.667 0.00 0.00 0.00 4.69
2089 2114 4.461198 AGTGCCCTTTAATAATTCCTCCG 58.539 43.478 0.00 0.00 0.00 4.63
2090 2115 9.232473 CTAATAGTGCCCTTTAATAATTCCTCC 57.768 37.037 0.00 0.00 0.00 4.30
2091 2116 9.232473 CCTAATAGTGCCCTTTAATAATTCCTC 57.768 37.037 0.00 0.00 0.00 3.71
2092 2117 7.670140 GCCTAATAGTGCCCTTTAATAATTCCT 59.330 37.037 0.00 0.00 0.00 3.36
2093 2118 7.361799 CGCCTAATAGTGCCCTTTAATAATTCC 60.362 40.741 0.00 0.00 0.00 3.01
2094 2119 7.527457 CGCCTAATAGTGCCCTTTAATAATTC 58.473 38.462 0.00 0.00 0.00 2.17
2095 2120 6.072119 GCGCCTAATAGTGCCCTTTAATAATT 60.072 38.462 0.00 0.00 37.29 1.40
2096 2121 5.414765 GCGCCTAATAGTGCCCTTTAATAAT 59.585 40.000 0.00 0.00 37.29 1.28
2097 2122 4.758165 GCGCCTAATAGTGCCCTTTAATAA 59.242 41.667 0.00 0.00 37.29 1.40
2098 2123 4.320870 GCGCCTAATAGTGCCCTTTAATA 58.679 43.478 0.00 0.00 37.29 0.98
2099 2124 3.146847 GCGCCTAATAGTGCCCTTTAAT 58.853 45.455 0.00 0.00 37.29 1.40
2100 2125 2.567985 GCGCCTAATAGTGCCCTTTAA 58.432 47.619 0.00 0.00 37.29 1.52
2101 2126 2.249844 GCGCCTAATAGTGCCCTTTA 57.750 50.000 0.00 0.00 37.29 1.85
2102 2127 3.095922 GCGCCTAATAGTGCCCTTT 57.904 52.632 0.00 0.00 37.29 3.11
2103 2128 4.878878 GCGCCTAATAGTGCCCTT 57.121 55.556 0.00 0.00 37.29 3.95
2107 2132 1.954651 GACCGGCGCCTAATAGTGC 60.955 63.158 26.68 0.89 42.62 4.40
2108 2133 1.300697 GGACCGGCGCCTAATAGTG 60.301 63.158 26.68 6.56 0.00 2.74
2109 2134 1.759299 TGGACCGGCGCCTAATAGT 60.759 57.895 26.68 13.61 0.00 2.12
2110 2135 1.300697 GTGGACCGGCGCCTAATAG 60.301 63.158 26.68 8.25 0.00 1.73
2111 2136 2.799452 GGTGGACCGGCGCCTAATA 61.799 63.158 26.68 3.83 0.00 0.98
2112 2137 4.171103 GGTGGACCGGCGCCTAAT 62.171 66.667 26.68 9.57 0.00 1.73
2123 2148 1.395635 AAAACTTTGGGTCGGTGGAC 58.604 50.000 0.00 0.00 42.66 4.02
2124 2149 2.438763 TCTAAAACTTTGGGTCGGTGGA 59.561 45.455 0.00 0.00 0.00 4.02
2125 2150 2.853705 TCTAAAACTTTGGGTCGGTGG 58.146 47.619 0.00 0.00 0.00 4.61
2126 2151 4.998672 TGTATCTAAAACTTTGGGTCGGTG 59.001 41.667 0.00 0.00 0.00 4.94
2127 2152 5.231702 TGTATCTAAAACTTTGGGTCGGT 57.768 39.130 0.00 0.00 0.00 4.69
2128 2153 6.373216 TGAATGTATCTAAAACTTTGGGTCGG 59.627 38.462 0.00 0.00 0.00 4.79
2129 2154 7.372451 TGAATGTATCTAAAACTTTGGGTCG 57.628 36.000 0.00 0.00 0.00 4.79
2135 2160 9.559958 CGCAGAAATGAATGTATCTAAAACTTT 57.440 29.630 0.00 0.00 0.00 2.66
2136 2161 8.946085 TCGCAGAAATGAATGTATCTAAAACTT 58.054 29.630 0.00 0.00 0.00 2.66
2137 2162 8.391106 GTCGCAGAAATGAATGTATCTAAAACT 58.609 33.333 0.00 0.00 39.69 2.66
2138 2163 7.370836 CGTCGCAGAAATGAATGTATCTAAAAC 59.629 37.037 0.00 0.00 39.69 2.43
2139 2164 7.276878 TCGTCGCAGAAATGAATGTATCTAAAA 59.723 33.333 0.00 0.00 39.69 1.52
2140 2165 6.754675 TCGTCGCAGAAATGAATGTATCTAAA 59.245 34.615 0.00 0.00 39.69 1.85
2141 2166 6.270064 TCGTCGCAGAAATGAATGTATCTAA 58.730 36.000 0.00 0.00 39.69 2.10
2142 2167 5.827666 TCGTCGCAGAAATGAATGTATCTA 58.172 37.500 0.00 0.00 39.69 1.98
2143 2168 4.682787 TCGTCGCAGAAATGAATGTATCT 58.317 39.130 0.00 0.00 39.69 1.98
2144 2169 4.504461 ACTCGTCGCAGAAATGAATGTATC 59.496 41.667 0.00 0.00 39.69 2.24
2145 2170 4.433615 ACTCGTCGCAGAAATGAATGTAT 58.566 39.130 0.00 0.00 39.69 2.29
2146 2171 3.845178 ACTCGTCGCAGAAATGAATGTA 58.155 40.909 0.00 0.00 39.69 2.29
2147 2172 2.688507 ACTCGTCGCAGAAATGAATGT 58.311 42.857 0.00 0.00 39.69 2.71
2148 2173 4.840401 TTACTCGTCGCAGAAATGAATG 57.160 40.909 0.00 0.00 39.69 2.67
2149 2174 6.422776 AAATTACTCGTCGCAGAAATGAAT 57.577 33.333 0.00 0.00 39.69 2.57
2150 2175 5.856126 AAATTACTCGTCGCAGAAATGAA 57.144 34.783 0.00 0.00 39.69 2.57
2151 2176 6.327154 TCTAAATTACTCGTCGCAGAAATGA 58.673 36.000 0.00 0.00 39.69 2.57
2152 2177 6.569228 TCTAAATTACTCGTCGCAGAAATG 57.431 37.500 0.00 0.00 39.69 2.32
2153 2178 6.237490 CGTTCTAAATTACTCGTCGCAGAAAT 60.237 38.462 0.00 0.00 39.69 2.17
2154 2179 5.060077 CGTTCTAAATTACTCGTCGCAGAAA 59.940 40.000 0.00 0.00 39.69 2.52
2155 2180 4.556135 CGTTCTAAATTACTCGTCGCAGAA 59.444 41.667 0.00 0.00 39.69 3.02
2156 2181 4.093514 CGTTCTAAATTACTCGTCGCAGA 58.906 43.478 0.00 0.00 0.00 4.26
2157 2182 3.239941 CCGTTCTAAATTACTCGTCGCAG 59.760 47.826 0.00 0.00 0.00 5.18
2158 2183 3.119884 TCCGTTCTAAATTACTCGTCGCA 60.120 43.478 0.00 0.00 0.00 5.10
2159 2184 3.429085 TCCGTTCTAAATTACTCGTCGC 58.571 45.455 0.00 0.00 0.00 5.19
2160 2185 4.033684 CCTCCGTTCTAAATTACTCGTCG 58.966 47.826 0.00 0.00 0.00 5.12
2161 2186 5.240713 TCCTCCGTTCTAAATTACTCGTC 57.759 43.478 0.00 0.00 0.00 4.20
2162 2187 5.184671 ACTTCCTCCGTTCTAAATTACTCGT 59.815 40.000 0.00 0.00 0.00 4.18
2163 2188 5.648572 ACTTCCTCCGTTCTAAATTACTCG 58.351 41.667 0.00 0.00 0.00 4.18
2164 2189 6.690528 CGTACTTCCTCCGTTCTAAATTACTC 59.309 42.308 0.00 0.00 0.00 2.59
2165 2190 6.151817 ACGTACTTCCTCCGTTCTAAATTACT 59.848 38.462 0.00 0.00 0.00 2.24
2166 2191 6.325596 ACGTACTTCCTCCGTTCTAAATTAC 58.674 40.000 0.00 0.00 0.00 1.89
2167 2192 6.515272 ACGTACTTCCTCCGTTCTAAATTA 57.485 37.500 0.00 0.00 0.00 1.40
2168 2193 5.397142 ACGTACTTCCTCCGTTCTAAATT 57.603 39.130 0.00 0.00 0.00 1.82
2169 2194 6.705863 ATACGTACTTCCTCCGTTCTAAAT 57.294 37.500 0.00 0.00 36.12 1.40
2170 2195 6.515272 AATACGTACTTCCTCCGTTCTAAA 57.485 37.500 0.00 0.00 36.12 1.85
2171 2196 6.150976 TGAAATACGTACTTCCTCCGTTCTAA 59.849 38.462 13.70 0.00 36.12 2.10
2172 2197 5.647658 TGAAATACGTACTTCCTCCGTTCTA 59.352 40.000 13.70 0.00 36.12 2.10
2173 2198 4.460382 TGAAATACGTACTTCCTCCGTTCT 59.540 41.667 13.70 0.00 36.12 3.01
2174 2199 4.737054 TGAAATACGTACTTCCTCCGTTC 58.263 43.478 13.70 1.08 36.12 3.95
2175 2200 4.789012 TGAAATACGTACTTCCTCCGTT 57.211 40.909 13.70 0.00 36.12 4.44
2176 2201 4.996788 ATGAAATACGTACTTCCTCCGT 57.003 40.909 13.70 0.00 38.53 4.69
2177 2202 5.689068 GGTTATGAAATACGTACTTCCTCCG 59.311 44.000 13.70 0.00 0.00 4.63
2178 2203 6.576185 TGGTTATGAAATACGTACTTCCTCC 58.424 40.000 13.70 10.64 0.00 4.30
2179 2204 7.253883 CGTTGGTTATGAAATACGTACTTCCTC 60.254 40.741 13.70 2.63 0.00 3.71
2180 2205 6.532657 CGTTGGTTATGAAATACGTACTTCCT 59.467 38.462 13.70 7.01 0.00 3.36
2181 2206 6.311200 ACGTTGGTTATGAAATACGTACTTCC 59.689 38.462 13.70 0.00 40.03 3.46
2182 2207 7.281991 ACGTTGGTTATGAAATACGTACTTC 57.718 36.000 9.75 9.75 40.03 3.01
2183 2208 7.009540 GCTACGTTGGTTATGAAATACGTACTT 59.990 37.037 0.00 0.00 41.70 2.24
2184 2209 6.473455 GCTACGTTGGTTATGAAATACGTACT 59.527 38.462 0.00 0.00 41.70 2.73
2185 2210 6.473455 AGCTACGTTGGTTATGAAATACGTAC 59.527 38.462 0.00 0.00 41.70 3.67
2201 2226 5.018695 AGATCGTTTTTCAAGCTACGTTG 57.981 39.130 0.00 0.00 35.63 4.10
2234 2259 4.643334 GTGCCCTTTAATAATTCCTCCGTT 59.357 41.667 0.00 0.00 0.00 4.44
2241 2266 6.147328 CGCCTAGTAGTGCCCTTTAATAATTC 59.853 42.308 0.00 0.00 0.00 2.17
2254 2279 3.769875 GACCGGCGCCTAGTAGTGC 62.770 68.421 26.68 6.03 42.62 4.40
2255 2280 2.412112 GACCGGCGCCTAGTAGTG 59.588 66.667 26.68 6.56 0.00 2.74
2256 2281 2.832201 GGACCGGCGCCTAGTAGT 60.832 66.667 26.68 13.61 0.00 2.73
2257 2282 3.962421 CGGACCGGCGCCTAGTAG 61.962 72.222 26.68 14.73 0.00 2.57
2269 2294 1.974875 AAATTTGGACCGGCGGACC 60.975 57.895 35.14 35.14 38.00 4.46
2270 2295 1.211709 CAAATTTGGACCGGCGGAC 59.788 57.895 35.78 27.54 0.00 4.79
2271 2296 3.674906 CAAATTTGGACCGGCGGA 58.325 55.556 35.78 10.47 0.00 5.54
2281 2306 1.974343 TCCGACCGGCCCAAATTTG 60.974 57.895 11.40 11.40 34.68 2.32
2282 2307 1.974875 GTCCGACCGGCCCAAATTT 60.975 57.895 0.00 0.00 34.68 1.82
2283 2308 2.360726 GTCCGACCGGCCCAAATT 60.361 61.111 0.00 0.00 34.68 1.82
2284 2309 4.419921 GGTCCGACCGGCCCAAAT 62.420 66.667 0.00 0.00 32.66 2.32
2302 2327 1.808390 GGTTTCATCCGACGTCCCG 60.808 63.158 10.58 0.00 0.00 5.14
2303 2328 4.196965 GGTTTCATCCGACGTCCC 57.803 61.111 10.58 0.00 0.00 4.46
2311 2336 1.202143 CGGCTAAAAGCGGTTTCATCC 60.202 52.381 13.74 12.58 43.62 3.51
2312 2337 2.174060 CGGCTAAAAGCGGTTTCATC 57.826 50.000 13.74 5.11 43.62 2.92
2319 2344 3.450578 TGTATCTAACGGCTAAAAGCGG 58.549 45.455 5.08 5.08 43.62 5.52
2320 2345 3.489785 CCTGTATCTAACGGCTAAAAGCG 59.510 47.826 0.00 0.00 43.62 4.68
2321 2346 4.507021 GTCCTGTATCTAACGGCTAAAAGC 59.493 45.833 0.00 0.00 41.46 3.51
2322 2347 5.048507 GGTCCTGTATCTAACGGCTAAAAG 58.951 45.833 0.00 0.00 32.61 2.27
2323 2348 4.141869 GGGTCCTGTATCTAACGGCTAAAA 60.142 45.833 0.00 0.00 32.61 1.52
2324 2349 3.385755 GGGTCCTGTATCTAACGGCTAAA 59.614 47.826 0.00 0.00 32.61 1.85
2325 2350 2.961062 GGGTCCTGTATCTAACGGCTAA 59.039 50.000 0.00 0.00 32.61 3.09
2326 2351 2.176364 AGGGTCCTGTATCTAACGGCTA 59.824 50.000 0.00 0.00 32.61 3.93
2327 2352 1.063114 AGGGTCCTGTATCTAACGGCT 60.063 52.381 0.00 0.00 32.61 5.52
2328 2353 1.411041 AGGGTCCTGTATCTAACGGC 58.589 55.000 0.00 0.00 32.61 5.68
2329 2354 3.490419 CGAAAGGGTCCTGTATCTAACGG 60.490 52.174 0.00 0.00 0.00 4.44
2330 2355 3.129988 ACGAAAGGGTCCTGTATCTAACG 59.870 47.826 0.00 0.00 0.00 3.18
2331 2356 4.680702 GACGAAAGGGTCCTGTATCTAAC 58.319 47.826 0.00 0.00 0.00 2.34
2332 2357 4.996788 GACGAAAGGGTCCTGTATCTAA 57.003 45.455 0.00 0.00 0.00 2.10
2342 2367 0.676782 CATGGTGGGACGAAAGGGTC 60.677 60.000 0.00 0.00 36.18 4.46
2343 2368 1.378762 CATGGTGGGACGAAAGGGT 59.621 57.895 0.00 0.00 0.00 4.34
2344 2369 2.046285 GCATGGTGGGACGAAAGGG 61.046 63.158 0.00 0.00 0.00 3.95
2345 2370 2.046285 GGCATGGTGGGACGAAAGG 61.046 63.158 0.00 0.00 0.00 3.11
2346 2371 2.398554 CGGCATGGTGGGACGAAAG 61.399 63.158 0.00 0.00 39.75 2.62
2347 2372 2.359354 CGGCATGGTGGGACGAAA 60.359 61.111 0.00 0.00 39.75 3.46
2348 2373 2.684192 AAACGGCATGGTGGGACGAA 62.684 55.000 0.00 0.00 39.75 3.85
2349 2374 1.828461 TAAACGGCATGGTGGGACGA 61.828 55.000 0.00 0.00 39.75 4.20
2350 2375 1.376166 TAAACGGCATGGTGGGACG 60.376 57.895 0.00 0.00 43.97 4.79
2351 2376 0.322187 AGTAAACGGCATGGTGGGAC 60.322 55.000 0.00 0.00 0.00 4.46
2352 2377 0.402504 AAGTAAACGGCATGGTGGGA 59.597 50.000 0.00 0.00 0.00 4.37
2353 2378 1.253100 AAAGTAAACGGCATGGTGGG 58.747 50.000 0.00 0.00 0.00 4.61
2354 2379 2.556622 AGAAAAGTAAACGGCATGGTGG 59.443 45.455 0.00 0.00 0.00 4.61
2355 2380 3.915437 AGAAAAGTAAACGGCATGGTG 57.085 42.857 0.00 0.00 0.00 4.17
2356 2381 3.254903 GGAAGAAAAGTAAACGGCATGGT 59.745 43.478 0.00 0.00 0.00 3.55
2357 2382 3.366985 GGGAAGAAAAGTAAACGGCATGG 60.367 47.826 0.00 0.00 0.00 3.66
2358 2383 3.366985 GGGGAAGAAAAGTAAACGGCATG 60.367 47.826 0.00 0.00 0.00 4.06
2359 2384 2.823747 GGGGAAGAAAAGTAAACGGCAT 59.176 45.455 0.00 0.00 0.00 4.40
2360 2385 2.232399 GGGGAAGAAAAGTAAACGGCA 58.768 47.619 0.00 0.00 0.00 5.69
2361 2386 1.542915 GGGGGAAGAAAAGTAAACGGC 59.457 52.381 0.00 0.00 0.00 5.68
2362 2387 3.150458 AGGGGGAAGAAAAGTAAACGG 57.850 47.619 0.00 0.00 0.00 4.44
2363 2388 4.644498 TGTAGGGGGAAGAAAAGTAAACG 58.356 43.478 0.00 0.00 0.00 3.60
2364 2389 6.964807 TTTGTAGGGGGAAGAAAAGTAAAC 57.035 37.500 0.00 0.00 0.00 2.01
2365 2390 7.231925 GTGATTTGTAGGGGGAAGAAAAGTAAA 59.768 37.037 0.00 0.00 0.00 2.01
2366 2391 6.717997 GTGATTTGTAGGGGGAAGAAAAGTAA 59.282 38.462 0.00 0.00 0.00 2.24
2367 2392 6.243148 GTGATTTGTAGGGGGAAGAAAAGTA 58.757 40.000 0.00 0.00 0.00 2.24
2368 2393 5.077564 GTGATTTGTAGGGGGAAGAAAAGT 58.922 41.667 0.00 0.00 0.00 2.66
2369 2394 4.156008 CGTGATTTGTAGGGGGAAGAAAAG 59.844 45.833 0.00 0.00 0.00 2.27
2370 2395 4.076394 CGTGATTTGTAGGGGGAAGAAAA 58.924 43.478 0.00 0.00 0.00 2.29
2371 2396 3.560453 CCGTGATTTGTAGGGGGAAGAAA 60.560 47.826 0.00 0.00 0.00 2.52
2372 2397 2.026636 CCGTGATTTGTAGGGGGAAGAA 60.027 50.000 0.00 0.00 0.00 2.52
2373 2398 1.557832 CCGTGATTTGTAGGGGGAAGA 59.442 52.381 0.00 0.00 0.00 2.87
2374 2399 1.408266 CCCGTGATTTGTAGGGGGAAG 60.408 57.143 0.00 0.00 39.11 3.46
2375 2400 0.621609 CCCGTGATTTGTAGGGGGAA 59.378 55.000 0.00 0.00 39.11 3.97
2376 2401 0.252789 TCCCGTGATTTGTAGGGGGA 60.253 55.000 0.00 0.00 43.92 4.81
2377 2402 0.180406 CTCCCGTGATTTGTAGGGGG 59.820 60.000 0.00 0.00 43.92 5.40
2378 2403 0.463833 GCTCCCGTGATTTGTAGGGG 60.464 60.000 0.00 0.00 43.92 4.79
2379 2404 0.251916 TGCTCCCGTGATTTGTAGGG 59.748 55.000 0.00 0.00 45.10 3.53
2380 2405 1.369625 GTGCTCCCGTGATTTGTAGG 58.630 55.000 0.00 0.00 0.00 3.18
2381 2406 0.999406 CGTGCTCCCGTGATTTGTAG 59.001 55.000 0.00 0.00 0.00 2.74
2382 2407 1.017177 GCGTGCTCCCGTGATTTGTA 61.017 55.000 0.00 0.00 0.00 2.41
2383 2408 2.325082 GCGTGCTCCCGTGATTTGT 61.325 57.895 0.00 0.00 0.00 2.83
2384 2409 2.324330 TGCGTGCTCCCGTGATTTG 61.324 57.895 0.00 0.00 0.00 2.32
2385 2410 2.031919 TGCGTGCTCCCGTGATTT 59.968 55.556 0.00 0.00 0.00 2.17
2386 2411 2.742372 GTGCGTGCTCCCGTGATT 60.742 61.111 0.00 0.00 0.00 2.57
2387 2412 3.939837 CTGTGCGTGCTCCCGTGAT 62.940 63.158 0.00 0.00 0.00 3.06
2388 2413 4.662961 CTGTGCGTGCTCCCGTGA 62.663 66.667 0.00 0.00 0.00 4.35
2416 2441 3.809013 ATGTCCCCCGTCCATGGC 61.809 66.667 6.96 0.96 0.00 4.40
2417 2442 2.192979 CATGTCCCCCGTCCATGG 59.807 66.667 4.97 4.97 33.87 3.66
2418 2443 1.153168 GTCATGTCCCCCGTCCATG 60.153 63.158 0.00 0.00 37.82 3.66
2419 2444 2.375345 GGTCATGTCCCCCGTCCAT 61.375 63.158 0.00 0.00 0.00 3.41
2420 2445 3.006728 GGTCATGTCCCCCGTCCA 61.007 66.667 0.00 0.00 0.00 4.02
2421 2446 3.793888 GGGTCATGTCCCCCGTCC 61.794 72.222 16.52 0.00 41.54 4.79
2427 2452 3.400599 ATTCGGCGGGTCATGTCCC 62.401 63.158 17.29 17.29 43.78 4.46
2428 2453 1.887707 GATTCGGCGGGTCATGTCC 60.888 63.158 7.21 0.00 0.00 4.02
2429 2454 0.876342 GAGATTCGGCGGGTCATGTC 60.876 60.000 7.21 0.00 0.00 3.06
2430 2455 1.144057 GAGATTCGGCGGGTCATGT 59.856 57.895 7.21 0.00 0.00 3.21
2431 2456 1.595382 GGAGATTCGGCGGGTCATG 60.595 63.158 7.21 0.00 0.00 3.07
2432 2457 2.822399 GGAGATTCGGCGGGTCAT 59.178 61.111 7.21 0.00 0.00 3.06
2433 2458 3.833645 CGGAGATTCGGCGGGTCA 61.834 66.667 7.21 0.00 0.00 4.02
2436 2461 4.951963 GAGCGGAGATTCGGCGGG 62.952 72.222 7.21 0.00 45.79 6.13
2439 2464 4.577246 AGCGAGCGGAGATTCGGC 62.577 66.667 0.91 0.91 42.20 5.54
2440 2465 2.354072 GAGCGAGCGGAGATTCGG 60.354 66.667 0.00 0.00 36.81 4.30
2441 2466 2.723995 CGAGCGAGCGGAGATTCG 60.724 66.667 0.00 0.00 38.74 3.34
2442 2467 3.027449 GCGAGCGAGCGGAGATTC 61.027 66.667 0.00 0.00 0.00 2.52
2443 2468 4.577246 GGCGAGCGAGCGGAGATT 62.577 66.667 0.00 0.00 38.18 2.40
2451 2476 4.933064 GGTGATCCGGCGAGCGAG 62.933 72.222 9.30 0.00 0.00 5.03
2461 2486 4.593864 GAGAGGCGGCGGTGATCC 62.594 72.222 9.78 0.00 0.00 3.36
2462 2487 3.492311 GAGAGAGGCGGCGGTGATC 62.492 68.421 9.78 0.00 0.00 2.92
2463 2488 3.532155 GAGAGAGGCGGCGGTGAT 61.532 66.667 9.78 0.00 0.00 3.06
2468 2493 4.504916 CTGTGGAGAGAGGCGGCG 62.505 72.222 0.51 0.51 0.00 6.46
2469 2494 4.828925 GCTGTGGAGAGAGGCGGC 62.829 72.222 0.00 0.00 0.00 6.53
2470 2495 3.073735 AGCTGTGGAGAGAGGCGG 61.074 66.667 0.00 0.00 0.00 6.13
2471 2496 2.493973 GAGCTGTGGAGAGAGGCG 59.506 66.667 0.00 0.00 0.00 5.52
2472 2497 2.049185 TCGAGCTGTGGAGAGAGGC 61.049 63.158 0.00 0.00 0.00 4.70
2473 2498 0.679640 AGTCGAGCTGTGGAGAGAGG 60.680 60.000 0.00 0.00 0.00 3.69
2474 2499 1.132262 GAAGTCGAGCTGTGGAGAGAG 59.868 57.143 0.00 0.00 0.00 3.20
2475 2500 1.169577 GAAGTCGAGCTGTGGAGAGA 58.830 55.000 0.00 0.00 0.00 3.10
2476 2501 1.132262 GAGAAGTCGAGCTGTGGAGAG 59.868 57.143 0.00 0.00 0.00 3.20
2477 2502 1.169577 GAGAAGTCGAGCTGTGGAGA 58.830 55.000 0.00 0.00 0.00 3.71
2478 2503 0.172352 GGAGAAGTCGAGCTGTGGAG 59.828 60.000 0.00 0.00 0.00 3.86
2479 2504 0.539669 TGGAGAAGTCGAGCTGTGGA 60.540 55.000 0.00 0.00 0.00 4.02
2480 2505 0.534412 ATGGAGAAGTCGAGCTGTGG 59.466 55.000 0.00 0.00 0.00 4.17
2481 2506 1.796982 CGATGGAGAAGTCGAGCTGTG 60.797 57.143 0.00 0.00 40.11 3.66
2482 2507 0.453793 CGATGGAGAAGTCGAGCTGT 59.546 55.000 0.00 0.00 40.11 4.40
2483 2508 3.248626 CGATGGAGAAGTCGAGCTG 57.751 57.895 0.00 0.00 40.11 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.