>input_sequence_78148
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---------------------------------------------------------------ATTGCTACAGCCTACAG
ACTGCGTCGATCTCATAATCTCCCACACCGCTCGTCGAAAATATGAAGGGGGGCAGCATGGTGTACATGACTGTTTTGTT
CATCGGGTGTCTTCTTATGGTTGGACAATGTAAGTACTGTTTATATATGTATATGTATATGTATATATATTTGTGTATTT
TGCACTGACATCCATTGCATAATAAATATTATCAATGTAATAGGTCGTCGTCCTGAGCCTGAGAGCATCTACGAAGATGG
CCGTGCAAACACAACTATGGCGGTCTCGTCATTAGATGACAGCAAAATTACCGTGAAATTTTGTCTTCCTAGGAATTGTA
CGTCTAAAGGCGAATTCTGGGGCTGGGATCCAGAGTGCTACTGCTGCCTCACTAAGCCGGGTGTACCGTGTTTTCATACC
GCAGAGGAGTGTCAGAAGAAATGCCCACCATTGAAATAAGGGTGTGGAATATGAGAATATATATAAAGCAGCCTGTTAGA
ATAAA---------------------------------------------------------------------------
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>chr1A_1_TraesCS1A01G226800
TCGCCCACCACGGCCGCCACTGGGAGGGCGCCGACGTGCTGGTCTTCAACACCTACCTCTGGTGGTGCACCGGGCTGCGC
TTCAGGGTCGTGAACGGGCCGATCGCCGACGCCAGGGAGGAGGACGCGGCGTGGGTGTCCACGGAGGAGGCCTACGGCAT
GGCGTTCCGGGACATGCTGCAGTGGGTGAGGGAGAACATGGACTTCAACACCACCAGGGTCTTCTTCACCAGCATGTCGC
CCACCCACGGCAAGAGCCAGGACTGGGGCGGCGCGGCGGGGGGCAACTGCTACAACGAGACGGCGATGATCGAGGACGCC
GGGTACTGGGGCACGGACGGGCGGCGGAGCGTGATGCGGGTGATCAGGGAGATCCTCGACGGCGACGGCGCCGACGTGCC
GCTCACGTTCCTCAACGTGACGCAGCTGTCCATGTACCGCAAGGACGCGCACACCTCCGTCTACAAGAAGCAGTGGAGCC
CGCTGACGCCGGAGCAGGTCGCCGACCCCAGGACCTACGCCGACTGCGTCCACTGGTGCCTCCCGGGGCTCCAGGACACG
TGGAACGAACTCCTCTACTCCAAGCTCTTCTACCCTTGATCACATT---TGTTTACTTACTAGG-----------TTGTG
ATAACCATGACAAAT--G----TAGAGTAGGCCTCCCG---AGTACAAACCTGGTGTTTGAATTGGTGGTAAATATTATG
CGTTTTGATTCCATTGCCTTAAGAAGAAGCTGCCAAACAGAATAGGCGATCTTCTTCTTCCTTTCGTGAGCCGAAGCGAG
GCAATCAGGTGCAGCTGTTAAACCTGCTAAAGGGAAGAACATGCAAGAGCCGACCGGAAAAACAGGATTATCATAACCAT
AAGATAATTGTGCGATCAGCAAATCGAATCGCACGTCTGGCATGCTTGTATATATGGAATGTGGCAATTAATGCATATCT
CCTACGTACTTAATTAGGCCTATACCCTCTATATATACTGAGGCGAGAGGGGGAGTCATTGCCATTGCTACAGCCTACAG
ACTGCGTCGATCTCATAATCTCCCACACCGCTCGTCGAAAATATGAAGGGGGGCAGCATGGTGTACATGACTGTTTTGTT
CATCGGGTGTCTTCTTATGGTTGGACAATGTAAGTACTGTTTATATATGTATATGTATATGTATATATATTTGTGTATTT
TGCACTGACATCCATTGCATAATAAATATTATCAATGTAATAGGTCGTCGTCCTGAGCCTGAGAGCATCTACGAAGATGG
CCGTGCAAACACAACTATGGCGGTCTCGTCATTAGATGACAGCAAAATTACCGTGAAATTTTGTCTTCCTAGGAATTGTA
CGTCTAAAGGCGAATTCTGGGGCTGGGATCCAGAGTGCTACTGCTGCCTCACTAAGCCGGGTGTACCGTGTTTTCATACC
GCAGAGGAGTGTCAGAAGAAATGCCCACCATTGAAATAAGGGTGTGGAATATGAGAATATATATAAAGCAGCCTGTTAGA
ATAAAATAACGTGTGGATATTGATGCATGCAGTCCCTTTTCACGAGTGT-ATAATAACTATGCTAATAAAAAACATGAGT
TGATTTTTTTCTTCCGCAAAAAAAATGAGTTGATTTTTTTCTTTTTAGGATCATGAGTTGAATTTTAATGCAGAAAATAT
TATTCCTTCTGACATACTAAGGCAATATCAAATAAAATGGATCTGAGTGAGTATGTTATTTGTAATATACTAATTGGTGG
CATGACTCGAACTTATTGTTTTTGCAAAACTAAATTATCAATTTTAGGAGGAAAAAGAAGTCCGTTGAATTCATGGCTCT
AGAAGGCCATATTCACCATCTAACCTTGAAAGTGCTCTTCTGAGCAGAGCATAAATGTGCTCGTTATCTGACTCGTTTCT
TTCGCTCTGAGATCCTCACGTGGCAGTGTAGAGGCTTATATATTACTCCCTCCGTTCCAAATTACTCGTCGCAGAAATGG
ATGTATCTAAAACTAAAATACATCTAGATACATCTATACTTGCGACAAGTAATTTGAAAAGGAGGGAGTACGTATTTCAT
AAGTAGCTTGAAAAACGATCTCATATTATGGGACGGAGGAATTATTAAAGGGCACTATTAGGCGCCGGTCCACCGACCCA
AAGTTTTAGATACATTCATTTCTGCGACGAGTAATTTAGAACGGAGGAAGTACGTATTTCATAACCAACGTAGCTTGAAA
AACGATCTCATATTATGGAACGGAGGAATTATTAAAGGGCACTACTAGGCGCCGGTCCGCCGGTCCAAATTTGGGCCGGT
CGGACCCGGGACGTCGGATGAAACCGCTTTTAGCCGTTAGATACAGGACCCTTTCGTCCCACCATGCCGTTTACTTTTCT
TCCCCCTACAAATCACGGGAGCACGCACAGGGGCGCGAGCGCCATGGACGGGGGACATGACCCGCCGAATCTCCGCTCGC
TCGCCGGATCACCGCCGCCTCTCTCCACAGCTCGACTTCTCCATCG
>chr1D_1
TCGCCCACCACGGCCGCCACTGGGAGGGCGCCGACGTCCTGGTCTTCAACACCTACCTCTGGTGGTGCACCGGCCTGCGC
TTCAGGGTCGTGAACGGGCCGATCGCGGGGGCCAGGGAGGAGGACGCGGCGTGGGTGTCGACCGAGGAGGCCTACGGCAT
GGCGTTCCGCGACATGCTGCAGTGGGTGAGGGACAACATGGACTTCAACACCACCAGGGTCTTCTTCACCAGCATGTCGC
CCACCCACGGCAAGAGCCAGGACTGGGGGGGCGCGGCGGGGGGCAACTGCTACAACGAGACGGCGATGATCGAGGACGCC
GGGTACTGGGGCACGGACGGGCGGCGGAGCGTGATGCGGGTGATCGGGGAGATCCTCGACGGCGACGGTGCCGACGTGCC
GCTCACCTTCCTCAACGTCACGCAGCTTTCCATGTACCGCAAGGACGCGCACACCTCCATCTACAAGAAGCAGTGGAACC
CGCTGACGCCGGAGCAGGTCGCCGACCCCAGGACCTACGCCGACTGCGTCCACTGGTGCCTCCCGGGGCTCCAGGACACG
TGGAACGAACTCCTCTACTCCAAGCTCTTCTACCCTTGATCACATTT--TGTTTACTTACTAGTAGGTTGTAAACTTGTA
ATAACCATGACAAGTACTCCTATAGAGTAGGCCTCCCG---AGTACAAACCTGGTGTTTGAATTGGTGGCAACTATCATG
CGTTTTGATTCCATAGCCTT---AAGACGCTGCCAAACAGAATAGGCGATCTTCTTCTTCCTTTCGTGAGCCGAAGCGAG
GCAATCAGGTGCAGCTGTTAAACCTGCTAAAGGGAAGAACATGCAAGAGCCGACCGGAAAAACAGGATTATCATAACCAT
AAGATAATTGTGCGATCAGCAAATCGAATCGCACGTCTGGCATGCTTGTATCTATGGAATGTGACAATTAATGCATATAT
CGTACGTACTTAATTCGACCTATACCCTCTATATATACTGAGGCGAGAGGGGGAGTCATTGCCATTG-------CTACAG
ACTGCGTCTATCTCATAATCCCCCACACCGTTCGTCGAAAATATGAAGGGGG-CAGCATGGTGTACATGACTGTTTTGTT
CATCGGGTGTCTTCTTATGGTTGGACAATGTAAGTACTGTTTATATATGTATA----------TATATATTTGTGTATTG
TGCACTGACATCCATGC----ATAAATATTATCAATGTAATAGGTCGTCGTCCTGAGCCTGAGAGCATCTACGAAGATGG
CCGTGCCAACACAACTATGGTGGTCTCGTCATT-----------------------------------------------
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>chr1B_1
TCTCCCACCACGGCCACCACTGGGAGGGCGCCGACGTGCTGGTCTTCAACACCTACCTCTGGTGGTGCACCGGGCTGCGC
TTCAGGGTCATGAACGGGCCGATCGCGGAGGCCAGGGAGGAGGACGCGGTGTGGGTGTCGACCGAGGAGGCCTACGGCAT
GGCGTTCCGCGACATGCTGCAGTGGGTGAGGGACAAGATGGACTTCAACACCACCAGGGTCTTCTTCACCAGCATGTCGC
CCACCCACGGCAAGAGCCAGGACTGGGGGGACGCGCCGGGGGGCAACTGCTACAACGAGACGGCGATGATCGAGGACGCC
GGGTACTGGGGCACGGACGGGCGGCGGAGCGTGATGCGGGTGATCAGGGAGATCCTCGACGGCGACGGCGCCGACGTGCC
GCTCACGTTCCTCAACGTGACGCAGCTGTCCATGTACCGCAAGGACGCGCACACCTCCATCTACAAGAAGCAGTGGAACC
CGCTGACGCCGGAGCAGGTCGCCGACCCCAGGACCTACGCCGACTGCGTCCACTGGTGCCTCCCGGGGCTCCAGGACACG
TGGAACGAACTCCTCTACTCCAAGCTCTTCTACCCTTGATCACATTTAGTGTTTACTTACTAGG-----------TTGTG
ATAACCATGCCAAAGTAG----TTGAGTAGGCCTCCCGAGTAGTACAAACCTGGTGTTTGAATTGGTGGCAACTATCATG
CGTTTTGATTCCATAGCCTTAAGAAGAAGCTGCCAA--------------------------------------------
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>chr1B_719
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---------------------AGAAGAAGCTGCCAAACAGAATAGGCGATCTTCTTCTTCCTTTTGTTAGCCGAAGCGAG
GCAATCAGGTGCAACTGTTGAACCTGCTAAAGGGAAGAACATGCAAGAGCCGACCGGAAAAACAGGATTATCATAACCAT
AAGATAATTGTGCGATCAGCAAATCGAATCGCACGTCTGGCATGCTTGTATATATGGAATGTGACAATTAATGCATATCT
CGTACGTACTTAATTAGACCTATACCCTCTATATATACTGAGGCGAGAGGGGGAGTCACAGCCATTGCTACAGCCTACAG
ACTGCGTCTATCTCATAATCTCCCACACCGTTCGTCGAAAATATGAAGGGGGGCAGCATGGTGTACATGACTGTTTTGTT
CATCGGGTGTCTTCTTATGGTTGGACAATGTAAGTACCGTTTATATATGTATATGTAT--GTATATATATTTGTGTATCG
TGCACTGACATCCATGC----ATAAATATTATCAATGTAATAGGTCGTCGCCCTGAGCCTGAGAGCATCTACCAAGATGG
CCGTGCCAACACAACTATGGCGGTCTCGTCATTAGATGACAGCAAAATTACCGTGAAATTTTGTCTTCCTAGAAATTGTA
CATCTAAAGGTGAATTCTGGGGCTGGGATCCAGAGTGCTACTGCTGCCTCACCAAGCCGGGTGTACCGTGTTTTCATACC
GCAGAGGAGTGTCAGAAGAAATGCCCACCATTGAAATAAGGGTGTGGAATATGAGAATATATATAAAGCAGCCTGTTAGA
ATAAAATAACGTGTGGATATTGATGCACGTAGTACCTTTTCACGAGTGT-ATAATAACTATGCTAATAAAAA-CATGA--
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>chr1D_1282
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------------------------CTCGTCATTAGATGACAGCAAAATTACCGTGAAATTTTGTCCTCCTAGAAATTGTA
CATCTAAAGGTGAATTCTGGGGCTGGGATCCAGAGTGCTACTGCTACCTCACTAAGCCGGGTGTACCGTGTTTTCATACC
GCAGAGGAGTGTGAGAAGAAATGCCCACCATTGAAATAAGGGTGTGGAATATGAGAATATATATAAAGCAGCCTCTTAGA
ATAAAATAATGTGTGGATATTGATGCATGCAGTACCTTTTCACGAGTGTAATAATAACTATGCTAATAAAAA-CATGAGT
TGATTTTCTTTTACGAA----------------------------------CATGAGTTGAATTTTAATGCAGAAAATAT
TATTCCCTCTGACATACTAAGGCAATATCAAATAAAATGGATCCGAGTGAGGATGTTATTTGTAAT-TACTAATTGGTGG
CCCGACTCAAACTTTTT-TTTTTGCGAAACTAAATTATCAATTTTAGGAGGAAAAACAAGTCCGTTGAATTCATGGCTCT
AGAAGGCCATATTCACCATCTAACCTTGAAAGTGCTCTTATGAGCAGAGCACAAATGTACTCGTTATCTGACTCGTTTCT
TTCGCTCTGAGATCCTCACGTGTCAGTGTAGAGGTTTATCTAT-------------------------------------
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--------------------------------------------------TACGTATTTCATAACTAACATAGCTTGAAA
AACGATCTCATATTATGGGACGGAGAAATTATTAAA--------------------------------------------
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>SNPs
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--------------------------S--S-----------------------------S--S-----------------
---------S-----------------------S----------------------------------------------
----------------------------S---------------------------------------------------
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----------------------------------------------------------S------------------S--
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---------------------------------------------------------------------S--S---S---
--------------S-----------------------------------------------------------------
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---------------------------------------------------------------S----------------
-S---------------S--------------------------------------------------------------
--------S---------------------S-------------------------------------------------
----------------------------------------------------------SS-------------------S
---------------SSSSSS-----------------------------------------------------------
------S-----------------------------------------------------------------S-------
-S--------S---------------------------------------------------------------------
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---------------------------------S--------------------------------------S-------
-------S--S-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------
------S------------------------------------S-------S--------------S-------------
-SS-----S-----S--S-------S------------------------------S-----------------------
---------------------------------------S-----------S------S---------------------
----------------------S-----------S----S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------S---S----------
------------------S------S----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_710
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-------------------------------------------------CCTGGTGTTTGAATTGGTGGT----------
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>reverse_2503
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----------------------CTCCACAGCTCGACTTCTCC----
