Multiple sequence alignment - TraesCS1A01G223000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G223000 chr1A 100.000 5032 0 0 1 5032 392777187 392782218 0.000000e+00 9293.0
1 TraesCS1A01G223000 chr1A 99.020 102 1 0 4216 4317 587607302 587607403 3.090000e-42 183.0
2 TraesCS1A01G223000 chr1A 99.020 102 1 0 4216 4317 587610184 587610285 3.090000e-42 183.0
3 TraesCS1A01G223000 chr1D 92.627 1804 103 14 2427 4218 313209046 313210831 0.000000e+00 2567.0
4 TraesCS1A01G223000 chr1D 92.921 1667 80 26 538 2185 313207361 313209008 0.000000e+00 2390.0
5 TraesCS1A01G223000 chr1D 86.667 510 34 16 4339 4823 313210869 313211369 7.420000e-148 534.0
6 TraesCS1A01G223000 chr1D 91.085 258 14 1 251 508 313206860 313207108 1.730000e-89 340.0
7 TraesCS1A01G223000 chr1D 89.583 192 17 1 4819 5007 313211417 313211608 1.810000e-59 241.0
8 TraesCS1A01G223000 chr1B 92.870 1627 99 9 2601 4218 423585913 423587531 0.000000e+00 2346.0
9 TraesCS1A01G223000 chr1B 92.392 1275 68 16 297 1563 423582854 423584107 0.000000e+00 1790.0
10 TraesCS1A01G223000 chr1B 93.450 687 33 7 1561 2238 423584392 423585075 0.000000e+00 1009.0
11 TraesCS1A01G223000 chr1B 90.145 345 26 8 2267 2608 423585174 423585513 4.620000e-120 442.0
12 TraesCS1A01G223000 chr1B 92.075 265 18 2 4339 4601 423587569 423587832 2.210000e-98 370.0
13 TraesCS1A01G223000 chr1B 87.556 225 13 7 4614 4823 423587966 423588190 3.890000e-61 246.0
14 TraesCS1A01G223000 chr1B 91.160 181 9 3 4834 5007 423588252 423588432 6.510000e-59 239.0
15 TraesCS1A01G223000 chr1B 87.387 111 11 3 61 170 222288259 222288151 1.900000e-24 124.0
16 TraesCS1A01G223000 chr1B 83.673 98 14 2 1457 1553 368408265 368408361 1.930000e-14 91.6
17 TraesCS1A01G223000 chr3A 98.095 105 2 0 4213 4317 550641835 550641939 3.090000e-42 183.0
18 TraesCS1A01G223000 chr2A 96.396 111 3 1 4208 4317 468295418 468295308 1.110000e-41 182.0
19 TraesCS1A01G223000 chr2A 95.495 111 5 0 4207 4317 96153102 96153212 1.440000e-40 178.0
20 TraesCS1A01G223000 chr2A 94.595 111 5 1 4217 4326 75116539 75116429 2.410000e-38 171.0
21 TraesCS1A01G223000 chr2A 87.097 62 6 2 1506 1566 193548340 193548280 9.040000e-08 69.4
22 TraesCS1A01G223000 chr7A 94.118 119 6 1 4212 4329 83773585 83773703 4.000000e-41 180.0
23 TraesCS1A01G223000 chr6A 94.118 119 5 2 4211 4327 14133958 14134076 4.000000e-41 180.0
24 TraesCS1A01G223000 chr6A 97.196 107 2 1 4211 4317 250834627 250834522 4.000000e-41 180.0
25 TraesCS1A01G223000 chr2B 85.821 134 14 5 3115 3244 468669151 468669283 2.440000e-28 137.0
26 TraesCS1A01G223000 chr2D 89.899 99 8 2 1459 1556 445896407 445896310 5.290000e-25 126.0
27 TraesCS1A01G223000 chr2D 83.582 134 17 4 3115 3244 395621583 395621715 2.460000e-23 121.0
28 TraesCS1A01G223000 chr7B 87.387 111 11 3 61 170 204458331 204458439 1.900000e-24 124.0
29 TraesCS1A01G223000 chr7B 82.178 101 14 4 1458 1556 508191866 508191768 3.230000e-12 84.2
30 TraesCS1A01G223000 chr6B 84.848 99 11 4 1457 1553 641674165 641674069 4.150000e-16 97.1
31 TraesCS1A01G223000 chr6B 81.081 111 11 9 1457 1563 348928311 348928207 4.180000e-11 80.5
32 TraesCS1A01G223000 chrUn 95.455 44 2 0 1457 1500 20846665 20846622 2.510000e-08 71.3
33 TraesCS1A01G223000 chr4B 79.208 101 16 4 1455 1552 176906303 176906205 1.170000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G223000 chr1A 392777187 392782218 5031 False 9293.000000 9293 100.000000 1 5032 1 chr1A.!!$F1 5031
1 TraesCS1A01G223000 chr1D 313206860 313211608 4748 False 1214.400000 2567 90.576600 251 5007 5 chr1D.!!$F1 4756
2 TraesCS1A01G223000 chr1B 423582854 423588432 5578 False 920.285714 2346 91.378286 297 5007 7 chr1B.!!$F2 4710

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
386 387 0.171455 CTCGTCTTCCTCGTTCCCTG 59.829 60.000 0.00 0.0 0.00 4.45 F
1559 1801 1.062198 TGGGACTGAGGGAGCATGATA 60.062 52.381 0.00 0.0 0.00 2.15 F
3285 4333 0.107831 TTGAACGTTCACCTGGAGGG 59.892 55.000 29.74 0.0 40.27 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1898 2428 0.254178 ACTCACATGCTTAGGGCCAG 59.746 55.0 6.18 0.00 40.92 4.85 R
3373 4421 0.533308 AACAGTTAGTTGGCGCCGAA 60.533 50.0 20.60 12.78 39.49 4.30 R
4830 6108 0.179048 TCAGGCAGCAACCGATATGG 60.179 55.0 0.00 0.00 46.41 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 8.519526 AGTATCTCTATTCTTCAATCTAAGGCG 58.480 37.037 0.00 0.00 0.00 5.52
37 38 6.716934 TCTCTATTCTTCAATCTAAGGCGT 57.283 37.500 0.00 0.00 0.00 5.68
38 39 6.740110 TCTCTATTCTTCAATCTAAGGCGTC 58.260 40.000 0.00 0.00 0.00 5.19
39 40 6.547880 TCTCTATTCTTCAATCTAAGGCGTCT 59.452 38.462 0.00 0.00 0.00 4.18
40 41 7.068839 TCTCTATTCTTCAATCTAAGGCGTCTT 59.931 37.037 7.72 7.72 37.03 3.01
41 42 8.234136 TCTATTCTTCAATCTAAGGCGTCTTA 57.766 34.615 9.51 9.51 34.59 2.10
42 43 8.861086 TCTATTCTTCAATCTAAGGCGTCTTAT 58.139 33.333 10.42 0.00 35.20 1.73
43 44 9.482627 CTATTCTTCAATCTAAGGCGTCTTATT 57.517 33.333 10.42 0.49 35.20 1.40
44 45 8.738645 ATTCTTCAATCTAAGGCGTCTTATTT 57.261 30.769 10.42 4.72 35.20 1.40
45 46 9.832445 ATTCTTCAATCTAAGGCGTCTTATTTA 57.168 29.630 10.42 0.00 35.20 1.40
46 47 9.832445 TTCTTCAATCTAAGGCGTCTTATTTAT 57.168 29.630 10.42 2.01 35.20 1.40
47 48 9.832445 TCTTCAATCTAAGGCGTCTTATTTATT 57.168 29.630 10.42 7.94 35.20 1.40
58 59 9.662947 AGGCGTCTTATTTATTTTTACTACTGT 57.337 29.630 0.00 0.00 0.00 3.55
85 86 8.352201 TCTTTTATGCATGTTATTGATACCTGC 58.648 33.333 10.16 0.00 37.56 4.85
86 87 7.579761 TTTATGCATGTTATTGATACCTGCA 57.420 32.000 10.16 8.06 46.19 4.41
88 89 5.694231 TGCATGTTATTGATACCTGCATC 57.306 39.130 0.00 0.00 40.56 3.91
89 90 5.379187 TGCATGTTATTGATACCTGCATCT 58.621 37.500 0.00 0.00 40.56 2.90
90 91 5.471116 TGCATGTTATTGATACCTGCATCTC 59.529 40.000 0.00 0.00 40.56 2.75
91 92 5.704515 GCATGTTATTGATACCTGCATCTCT 59.295 40.000 0.00 0.00 37.19 3.10
92 93 6.128336 GCATGTTATTGATACCTGCATCTCTC 60.128 42.308 0.00 0.00 37.19 3.20
93 94 5.858381 TGTTATTGATACCTGCATCTCTCC 58.142 41.667 0.00 0.00 0.00 3.71
94 95 5.604231 TGTTATTGATACCTGCATCTCTCCT 59.396 40.000 0.00 0.00 0.00 3.69
95 96 4.620589 ATTGATACCTGCATCTCTCCTG 57.379 45.455 0.00 0.00 0.00 3.86
96 97 3.319031 TGATACCTGCATCTCTCCTGA 57.681 47.619 0.00 0.00 0.00 3.86
97 98 3.854437 TGATACCTGCATCTCTCCTGAT 58.146 45.455 0.00 0.00 0.00 2.90
98 99 3.831333 TGATACCTGCATCTCTCCTGATC 59.169 47.826 0.00 0.00 0.00 2.92
99 100 1.422531 ACCTGCATCTCTCCTGATCC 58.577 55.000 0.00 0.00 0.00 3.36
100 101 0.686224 CCTGCATCTCTCCTGATCCC 59.314 60.000 0.00 0.00 0.00 3.85
101 102 1.421480 CTGCATCTCTCCTGATCCCA 58.579 55.000 0.00 0.00 0.00 4.37
102 103 1.979308 CTGCATCTCTCCTGATCCCAT 59.021 52.381 0.00 0.00 0.00 4.00
103 104 1.976404 TGCATCTCTCCTGATCCCATC 59.024 52.381 0.00 0.00 0.00 3.51
104 105 2.259012 GCATCTCTCCTGATCCCATCT 58.741 52.381 0.00 0.00 0.00 2.90
105 106 2.027929 GCATCTCTCCTGATCCCATCTG 60.028 54.545 0.00 0.00 0.00 2.90
106 107 3.508426 CATCTCTCCTGATCCCATCTGA 58.492 50.000 0.00 0.00 0.00 3.27
107 108 3.919304 TCTCTCCTGATCCCATCTGAT 57.081 47.619 0.00 0.00 0.00 2.90
108 109 3.508426 TCTCTCCTGATCCCATCTGATG 58.492 50.000 10.71 10.71 0.00 3.07
109 110 3.116823 TCTCTCCTGATCCCATCTGATGT 60.117 47.826 15.95 0.00 0.00 3.06
110 111 4.106987 TCTCTCCTGATCCCATCTGATGTA 59.893 45.833 15.95 4.84 0.00 2.29
111 112 4.414677 TCTCCTGATCCCATCTGATGTAG 58.585 47.826 15.95 7.59 0.00 2.74
112 113 4.106987 TCTCCTGATCCCATCTGATGTAGA 59.893 45.833 15.95 12.33 40.37 2.59
113 114 4.819610 TCCTGATCCCATCTGATGTAGAA 58.180 43.478 15.95 0.00 39.30 2.10
114 115 5.218959 TCCTGATCCCATCTGATGTAGAAA 58.781 41.667 15.95 5.55 39.30 2.52
115 116 5.848369 TCCTGATCCCATCTGATGTAGAAAT 59.152 40.000 15.95 2.80 39.30 2.17
116 117 7.018769 TCCTGATCCCATCTGATGTAGAAATA 58.981 38.462 15.95 3.91 39.30 1.40
117 118 7.513781 TCCTGATCCCATCTGATGTAGAAATAA 59.486 37.037 15.95 1.33 39.30 1.40
118 119 8.159447 CCTGATCCCATCTGATGTAGAAATAAA 58.841 37.037 15.95 0.00 39.30 1.40
119 120 9.736414 CTGATCCCATCTGATGTAGAAATAAAT 57.264 33.333 15.95 0.00 39.30 1.40
136 137 8.372459 AGAAATAAATTAGTTGGTTGGTTTCCC 58.628 33.333 0.00 0.00 0.00 3.97
137 138 4.967084 AAATTAGTTGGTTGGTTTCCCC 57.033 40.909 0.00 0.00 0.00 4.81
138 139 3.621682 ATTAGTTGGTTGGTTTCCCCA 57.378 42.857 0.00 0.00 43.27 4.96
139 140 3.621682 TTAGTTGGTTGGTTTCCCCAT 57.378 42.857 0.00 0.00 44.74 4.00
140 141 4.743705 TTAGTTGGTTGGTTTCCCCATA 57.256 40.909 0.00 0.00 44.74 2.74
141 142 3.621682 AGTTGGTTGGTTTCCCCATAA 57.378 42.857 0.00 0.00 44.74 1.90
142 143 4.140575 AGTTGGTTGGTTTCCCCATAAT 57.859 40.909 0.00 0.00 44.74 1.28
143 144 4.498493 AGTTGGTTGGTTTCCCCATAATT 58.502 39.130 0.00 0.00 44.74 1.40
144 145 4.910913 AGTTGGTTGGTTTCCCCATAATTT 59.089 37.500 0.00 0.00 44.74 1.82
145 146 5.371176 AGTTGGTTGGTTTCCCCATAATTTT 59.629 36.000 0.00 0.00 44.74 1.82
146 147 5.234466 TGGTTGGTTTCCCCATAATTTTG 57.766 39.130 0.00 0.00 44.74 2.44
147 148 4.660771 TGGTTGGTTTCCCCATAATTTTGT 59.339 37.500 0.00 0.00 44.74 2.83
148 149 5.000591 GGTTGGTTTCCCCATAATTTTGTG 58.999 41.667 0.00 0.00 44.74 3.33
149 150 4.278975 TGGTTTCCCCATAATTTTGTGC 57.721 40.909 0.00 0.00 38.72 4.57
150 151 3.906846 TGGTTTCCCCATAATTTTGTGCT 59.093 39.130 0.00 0.00 38.72 4.40
151 152 5.087323 TGGTTTCCCCATAATTTTGTGCTA 58.913 37.500 0.00 0.00 38.72 3.49
152 153 5.544176 TGGTTTCCCCATAATTTTGTGCTAA 59.456 36.000 0.00 0.00 38.72 3.09
153 154 6.214412 TGGTTTCCCCATAATTTTGTGCTAAT 59.786 34.615 0.00 0.00 38.72 1.73
154 155 7.109501 GGTTTCCCCATAATTTTGTGCTAATT 58.890 34.615 0.00 0.00 0.00 1.40
155 156 8.261522 GGTTTCCCCATAATTTTGTGCTAATTA 58.738 33.333 0.00 0.00 33.40 1.40
156 157 9.093970 GTTTCCCCATAATTTTGTGCTAATTAC 57.906 33.333 0.00 0.00 32.12 1.89
157 158 8.602472 TTCCCCATAATTTTGTGCTAATTACT 57.398 30.769 0.00 0.00 32.12 2.24
158 159 8.232913 TCCCCATAATTTTGTGCTAATTACTC 57.767 34.615 0.00 0.00 32.12 2.59
159 160 8.058847 TCCCCATAATTTTGTGCTAATTACTCT 58.941 33.333 0.00 0.00 32.12 3.24
160 161 9.349713 CCCCATAATTTTGTGCTAATTACTCTA 57.650 33.333 0.00 0.00 32.12 2.43
165 166 7.625828 ATTTTGTGCTAATTACTCTACACCC 57.374 36.000 0.00 0.00 0.00 4.61
166 167 4.380841 TGTGCTAATTACTCTACACCCG 57.619 45.455 0.00 0.00 0.00 5.28
167 168 3.765511 TGTGCTAATTACTCTACACCCGT 59.234 43.478 0.00 0.00 0.00 5.28
168 169 4.142315 TGTGCTAATTACTCTACACCCGTC 60.142 45.833 0.00 0.00 0.00 4.79
169 170 4.097589 GTGCTAATTACTCTACACCCGTCT 59.902 45.833 0.00 0.00 0.00 4.18
170 171 5.297776 GTGCTAATTACTCTACACCCGTCTA 59.702 44.000 0.00 0.00 0.00 2.59
171 172 5.530171 TGCTAATTACTCTACACCCGTCTAG 59.470 44.000 0.00 0.00 0.00 2.43
172 173 5.048852 GCTAATTACTCTACACCCGTCTAGG 60.049 48.000 0.00 0.00 40.63 3.02
173 174 4.785346 ATTACTCTACACCCGTCTAGGA 57.215 45.455 0.00 0.00 45.00 2.94
174 175 4.785346 TTACTCTACACCCGTCTAGGAT 57.215 45.455 0.00 0.00 45.00 3.24
175 176 3.666345 ACTCTACACCCGTCTAGGATT 57.334 47.619 0.00 0.00 45.00 3.01
176 177 3.978610 ACTCTACACCCGTCTAGGATTT 58.021 45.455 0.00 0.00 45.00 2.17
177 178 4.351127 ACTCTACACCCGTCTAGGATTTT 58.649 43.478 0.00 0.00 45.00 1.82
178 179 4.776308 ACTCTACACCCGTCTAGGATTTTT 59.224 41.667 0.00 0.00 45.00 1.94
179 180 5.954150 ACTCTACACCCGTCTAGGATTTTTA 59.046 40.000 0.00 0.00 45.00 1.52
180 181 6.610425 ACTCTACACCCGTCTAGGATTTTTAT 59.390 38.462 0.00 0.00 45.00 1.40
181 182 7.125356 ACTCTACACCCGTCTAGGATTTTTATT 59.875 37.037 0.00 0.00 45.00 1.40
182 183 7.495055 TCTACACCCGTCTAGGATTTTTATTC 58.505 38.462 0.00 0.00 45.00 1.75
183 184 5.434408 ACACCCGTCTAGGATTTTTATTCC 58.566 41.667 0.00 0.00 45.00 3.01
184 185 4.820173 CACCCGTCTAGGATTTTTATTCCC 59.180 45.833 0.00 0.00 45.00 3.97
185 186 4.141321 ACCCGTCTAGGATTTTTATTCCCC 60.141 45.833 0.00 0.00 45.00 4.81
186 187 4.395625 CCGTCTAGGATTTTTATTCCCCC 58.604 47.826 0.00 0.00 45.00 5.40
187 188 4.062991 CGTCTAGGATTTTTATTCCCCCG 58.937 47.826 0.00 0.00 33.45 5.73
188 189 4.443881 CGTCTAGGATTTTTATTCCCCCGT 60.444 45.833 0.00 0.00 33.45 5.28
189 190 5.443283 GTCTAGGATTTTTATTCCCCCGTT 58.557 41.667 0.00 0.00 33.45 4.44
190 191 5.889853 GTCTAGGATTTTTATTCCCCCGTTT 59.110 40.000 0.00 0.00 33.45 3.60
191 192 6.039047 GTCTAGGATTTTTATTCCCCCGTTTC 59.961 42.308 0.00 0.00 33.45 2.78
192 193 4.679331 AGGATTTTTATTCCCCCGTTTCA 58.321 39.130 0.00 0.00 33.45 2.69
193 194 5.088026 AGGATTTTTATTCCCCCGTTTCAA 58.912 37.500 0.00 0.00 33.45 2.69
194 195 5.046878 AGGATTTTTATTCCCCCGTTTCAAC 60.047 40.000 0.00 0.00 33.45 3.18
195 196 8.238231 AGGATTTTTATTCCCCCGTTTCAACG 62.238 42.308 5.06 5.06 41.84 4.10
203 204 3.943034 CGTTTCAACGCACGGGCA 61.943 61.111 11.77 0.00 46.06 5.36
204 205 2.409651 GTTTCAACGCACGGGCAA 59.590 55.556 11.77 0.00 41.24 4.52
205 206 1.007849 GTTTCAACGCACGGGCAAT 60.008 52.632 11.77 0.00 41.24 3.56
206 207 0.596341 GTTTCAACGCACGGGCAATT 60.596 50.000 11.77 0.00 41.24 2.32
207 208 0.952280 TTTCAACGCACGGGCAATTA 59.048 45.000 11.77 0.00 41.24 1.40
208 209 0.519519 TTCAACGCACGGGCAATTAG 59.480 50.000 11.77 0.00 41.24 1.73
209 210 0.604243 TCAACGCACGGGCAATTAGT 60.604 50.000 11.77 0.00 41.24 2.24
210 211 1.080298 CAACGCACGGGCAATTAGTA 58.920 50.000 11.77 0.00 41.24 1.82
211 212 1.668751 CAACGCACGGGCAATTAGTAT 59.331 47.619 11.77 0.00 41.24 2.12
212 213 2.032680 ACGCACGGGCAATTAGTATT 57.967 45.000 11.77 0.00 41.24 1.89
213 214 1.668751 ACGCACGGGCAATTAGTATTG 59.331 47.619 11.77 0.00 43.28 1.90
214 215 1.668751 CGCACGGGCAATTAGTATTGT 59.331 47.619 11.77 0.00 42.56 2.71
215 216 2.096819 CGCACGGGCAATTAGTATTGTT 59.903 45.455 11.77 0.00 42.56 2.83
216 217 3.310227 CGCACGGGCAATTAGTATTGTTA 59.690 43.478 11.77 0.00 42.56 2.41
217 218 4.024387 CGCACGGGCAATTAGTATTGTTAT 60.024 41.667 11.77 0.00 42.56 1.89
218 219 5.212194 GCACGGGCAATTAGTATTGTTATG 58.788 41.667 3.77 0.00 42.56 1.90
219 220 5.220970 GCACGGGCAATTAGTATTGTTATGT 60.221 40.000 3.77 0.00 42.56 2.29
220 221 6.017770 GCACGGGCAATTAGTATTGTTATGTA 60.018 38.462 3.77 0.00 42.56 2.29
221 222 7.308348 GCACGGGCAATTAGTATTGTTATGTAT 60.308 37.037 3.77 0.00 42.56 2.29
222 223 8.564574 CACGGGCAATTAGTATTGTTATGTATT 58.435 33.333 0.00 0.00 42.56 1.89
223 224 9.127277 ACGGGCAATTAGTATTGTTATGTATTT 57.873 29.630 0.00 0.00 42.56 1.40
238 239 9.878667 TGTTATGTATTTAGAACATTTCCTCGA 57.121 29.630 0.00 0.00 38.49 4.04
243 244 9.280174 TGTATTTAGAACATTTCCTCGAAAAGT 57.720 29.630 0.00 0.00 35.45 2.66
246 247 7.662604 TTAGAACATTTCCTCGAAAAGTACC 57.337 36.000 0.00 0.00 33.33 3.34
247 248 5.617252 AGAACATTTCCTCGAAAAGTACCA 58.383 37.500 0.00 0.00 33.33 3.25
248 249 6.059484 AGAACATTTCCTCGAAAAGTACCAA 58.941 36.000 0.00 0.00 33.33 3.67
249 250 5.684550 ACATTTCCTCGAAAAGTACCAAC 57.315 39.130 0.00 0.00 32.82 3.77
254 255 3.118334 TCCTCGAAAAGTACCAACAACCA 60.118 43.478 0.00 0.00 0.00 3.67
321 322 0.600255 ACTCCTTTGTCTCGCAACGG 60.600 55.000 0.00 0.00 44.97 4.44
366 367 2.128035 CAAATGATAGCCCGTCTCGAC 58.872 52.381 0.00 0.00 0.00 4.20
385 386 0.966370 CCTCGTCTTCCTCGTTCCCT 60.966 60.000 0.00 0.00 0.00 4.20
386 387 0.171455 CTCGTCTTCCTCGTTCCCTG 59.829 60.000 0.00 0.00 0.00 4.45
397 398 4.208426 TTCCCTGGAACTCGCTCA 57.792 55.556 0.00 0.00 0.00 4.26
412 413 1.676529 CGCTCATCTTCCTCGTTCCTA 59.323 52.381 0.00 0.00 0.00 2.94
509 510 1.971695 GCTTGGTAAGCGTGCCCTT 60.972 57.895 4.05 0.00 45.74 3.95
524 525 1.153147 CCTTTAGCTTCGCCTCCCC 60.153 63.158 0.00 0.00 0.00 4.81
805 1041 1.815003 GGCCTTATGGATGCTATGCAC 59.185 52.381 0.00 0.00 43.04 4.57
855 1091 7.011828 GTGCAACAATATCCAAATACGTAGT 57.988 36.000 0.08 0.00 40.88 2.73
856 1092 8.133754 GTGCAACAATATCCAAATACGTAGTA 57.866 34.615 0.08 0.00 42.83 1.82
857 1093 8.060090 GTGCAACAATATCCAAATACGTAGTAC 58.940 37.037 0.08 0.00 41.71 2.73
933 1170 2.748605 CGTAGCTGAGGATTGGCTTAG 58.251 52.381 0.00 0.00 37.50 2.18
956 1193 4.883585 GGCACCATTCATCTGTTTCTGATA 59.116 41.667 0.00 0.00 0.00 2.15
1062 1299 7.793036 ACTATGAGGTACCCATCTTTTAGTTC 58.207 38.462 16.37 1.55 0.00 3.01
1139 1378 7.944729 ACAATATTTTTCTCATGGCTACAGT 57.055 32.000 0.00 0.00 0.00 3.55
1152 1391 3.181466 TGGCTACAGTATCACAATCGCAT 60.181 43.478 0.00 0.00 0.00 4.73
1251 1491 2.508526 AGTTCAACTTAAGCTGGCCAG 58.491 47.619 29.34 29.34 0.00 4.85
1313 1553 3.320826 GCCTGGGTTCTTGTTTTACATGT 59.679 43.478 2.69 2.69 0.00 3.21
1337 1577 7.552687 TGTTTGCTATATGTCCGAAATTCTCTT 59.447 33.333 0.00 0.00 0.00 2.85
1480 1722 2.850568 ACTCCCTCCGTCCCAAAATAAT 59.149 45.455 0.00 0.00 0.00 1.28
1504 1746 5.399858 TGTCGCTGATCTAGTACAACTTTC 58.600 41.667 0.00 0.00 0.00 2.62
1525 1767 9.334693 ACTTTCTACTAACGTTGTACTAAATCG 57.665 33.333 11.99 5.41 0.00 3.34
1553 1795 3.282885 CTTATTTTGGGACTGAGGGAGC 58.717 50.000 0.00 0.00 0.00 4.70
1559 1801 1.062198 TGGGACTGAGGGAGCATGATA 60.062 52.381 0.00 0.00 0.00 2.15
1571 2100 5.132648 AGGGAGCATGATATAACTGTTGGAA 59.867 40.000 2.69 0.00 0.00 3.53
1593 2122 8.461222 TGGAACAGTTCATCTTATTTTATGCTG 58.539 33.333 15.36 0.00 0.00 4.41
1662 2191 9.829507 AATTGTTTGTAAGGATCAAAATGTTCA 57.170 25.926 0.00 0.00 36.71 3.18
1693 2222 7.877003 TCTTGAGTTTTTACTGTTGTTGTGAA 58.123 30.769 0.00 0.00 0.00 3.18
1706 2235 4.344359 TGTTGTGAACTATGTGCCTACA 57.656 40.909 0.00 0.00 41.89 2.74
1819 2348 1.078759 CGACTGATCTCCGGTTGCAC 61.079 60.000 0.00 0.00 33.70 4.57
2026 2570 8.808092 GGCCTTTACATACTCAAGAGTAGATAT 58.192 37.037 14.54 4.09 45.94 1.63
2062 2606 7.987268 TTAGTGACATGTCTATTCTTAAGCG 57.013 36.000 25.55 0.00 0.00 4.68
2091 2635 8.907885 AGGAAGGAATTATTAGAGCAACAAATC 58.092 33.333 0.00 0.00 0.00 2.17
2097 2641 8.814038 AATTATTAGAGCAACAAATCTGACCT 57.186 30.769 0.00 0.00 0.00 3.85
2108 2652 4.763793 ACAAATCTGACCTTGAACCAGATG 59.236 41.667 0.00 0.00 44.26 2.90
2109 2653 4.647564 AATCTGACCTTGAACCAGATGT 57.352 40.909 0.00 0.00 44.26 3.06
2110 2654 3.407424 TCTGACCTTGAACCAGATGTG 57.593 47.619 0.00 0.00 32.57 3.21
2122 2667 2.092429 ACCAGATGTGCCAATTCGGTAT 60.092 45.455 0.00 0.00 36.97 2.73
2159 2704 3.366052 TTCCTGGAGGGCACTTTTATC 57.634 47.619 0.00 0.00 35.41 1.75
2189 2734 6.213195 GGATTTCTGGACCTCTGAGATCATAT 59.787 42.308 6.17 0.00 36.97 1.78
2232 2777 8.148351 GCCTACAGTGGTTTACATGAGATATTA 58.852 37.037 0.00 0.00 0.00 0.98
2244 2789 7.881643 ACATGAGATATTATTTCTGTCTCGC 57.118 36.000 0.00 0.00 38.46 5.03
2245 2790 6.584184 ACATGAGATATTATTTCTGTCTCGCG 59.416 38.462 0.00 0.00 38.46 5.87
2246 2791 6.313744 TGAGATATTATTTCTGTCTCGCGA 57.686 37.500 9.26 9.26 38.46 5.87
2247 2792 6.914259 TGAGATATTATTTCTGTCTCGCGAT 58.086 36.000 10.36 0.00 38.46 4.58
2248 2793 7.371159 TGAGATATTATTTCTGTCTCGCGATT 58.629 34.615 10.36 0.00 38.46 3.34
2249 2794 7.539022 TGAGATATTATTTCTGTCTCGCGATTC 59.461 37.037 10.36 6.49 38.46 2.52
2250 2795 7.371159 AGATATTATTTCTGTCTCGCGATTCA 58.629 34.615 10.36 11.21 0.00 2.57
2251 2796 5.896922 ATTATTTCTGTCTCGCGATTCAG 57.103 39.130 24.81 24.81 0.00 3.02
2252 2797 3.510388 ATTTCTGTCTCGCGATTCAGA 57.490 42.857 27.46 27.46 35.54 3.27
2253 2798 2.264109 TTCTGTCTCGCGATTCAGAC 57.736 50.000 29.54 23.87 39.70 3.51
2254 2799 1.165270 TCTGTCTCGCGATTCAGACA 58.835 50.000 27.46 25.16 45.45 3.41
2276 2904 7.824289 AGACACACATATTTGCTACAGTATTGT 59.176 33.333 0.00 0.00 41.39 2.71
2278 2906 7.119360 CACACATATTTGCTACAGTATTGTCG 58.881 38.462 0.00 0.00 38.76 4.35
2341 2969 9.985730 TTCTGAACTTTATGCATTTCATCTTTT 57.014 25.926 3.54 0.00 36.63 2.27
2346 2974 8.693542 ACTTTATGCATTTCATCTTTTGCTAC 57.306 30.769 3.54 0.00 36.63 3.58
2348 2976 4.095410 TGCATTTCATCTTTTGCTACGG 57.905 40.909 0.00 0.00 36.10 4.02
2358 2986 4.901868 TCTTTTGCTACGGTTTCCTATGT 58.098 39.130 0.00 0.00 0.00 2.29
2380 3008 7.639113 TGTAGTTCAAATTGACCTGTTTCTT 57.361 32.000 3.18 0.00 0.00 2.52
2407 3035 8.417273 ACACCCTATAATGTAAATTAATGCCC 57.583 34.615 0.00 0.00 0.00 5.36
2442 3070 5.913137 TCAACAAATGGATATTCGCCTTT 57.087 34.783 0.00 0.00 0.00 3.11
2448 3076 7.596494 ACAAATGGATATTCGCCTTTATCATG 58.404 34.615 0.00 0.00 0.00 3.07
2479 3108 6.042437 ACTCCATGGATGCTTTTCTTCTTTTT 59.958 34.615 16.63 0.00 0.00 1.94
2536 3165 5.941788 ACCCTTTATCTTTGTCACTCTTGT 58.058 37.500 0.00 0.00 0.00 3.16
2558 3188 3.055747 TGTTTTGAACCCTTCGGCTTTTT 60.056 39.130 0.00 0.00 0.00 1.94
2618 3656 1.271656 CCAGGAGCTTTGCCTTTTCAG 59.728 52.381 0.00 0.00 32.12 3.02
2627 3668 6.062095 AGCTTTGCCTTTTCAGTAAGAGTAA 58.938 36.000 0.00 0.00 0.00 2.24
2630 3676 7.572168 GCTTTGCCTTTTCAGTAAGAGTAAGAG 60.572 40.741 0.00 0.00 0.00 2.85
2693 3739 1.209504 AGTTACACACACACCAGCACT 59.790 47.619 0.00 0.00 0.00 4.40
2765 3811 2.346803 CGACACCCTACAACCAGATTG 58.653 52.381 0.00 0.00 44.60 2.67
2785 3831 3.612247 AAGCCGCCACGCTGAATCT 62.612 57.895 0.00 0.00 39.64 2.40
2825 3871 1.069090 GCCACAACCAGACGAGTCA 59.931 57.895 5.99 0.00 0.00 3.41
2827 3873 1.878102 GCCACAACCAGACGAGTCAAT 60.878 52.381 5.99 0.00 0.00 2.57
2862 3908 3.637273 AACCAGAGACGGCACCCC 61.637 66.667 0.00 0.00 0.00 4.95
2919 3965 7.784037 TCTGACTTACTAACCTAAAACACACA 58.216 34.615 0.00 0.00 0.00 3.72
2933 3979 3.625897 CACACTGACCCCGAGGCA 61.626 66.667 0.00 0.00 36.11 4.75
2976 4022 1.230635 CCGTCACTCAAGCAACTGGG 61.231 60.000 0.00 0.00 0.00 4.45
3000 4046 2.369015 ACCCCACAACCAGACCCA 60.369 61.111 0.00 0.00 0.00 4.51
3005 4051 1.463553 CCACAACCAGACCCAAAGCC 61.464 60.000 0.00 0.00 0.00 4.35
3022 4068 4.923942 CGCCGCTCCAGCATCCAT 62.924 66.667 0.00 0.00 42.21 3.41
3175 4223 3.873952 GGCAACTCCACATGATAGTCTTC 59.126 47.826 0.00 0.00 34.01 2.87
3231 4279 1.827969 CAAGGAGGAAGTGACGAGGAT 59.172 52.381 0.00 0.00 0.00 3.24
3263 4311 2.592993 CCTCCGGCAGAAACAGGGA 61.593 63.158 0.00 0.00 0.00 4.20
3272 4320 2.287009 GCAGAAACAGGGAACTTGAACG 60.287 50.000 0.00 0.00 40.21 3.95
3285 4333 0.107831 TTGAACGTTCACCTGGAGGG 59.892 55.000 29.74 0.00 40.27 4.30
3309 4357 3.948473 TCAATACCAGAGACTTCGAGAGG 59.052 47.826 0.00 0.00 0.00 3.69
3357 4405 1.923395 AAGGAGGGGAACGATGCCA 60.923 57.895 5.42 0.00 39.19 4.92
3372 4420 3.129502 CCAGCAGGTGTCGCCATG 61.130 66.667 4.97 1.62 40.61 3.66
3373 4421 2.359107 CAGCAGGTGTCGCCATGT 60.359 61.111 4.97 0.00 40.61 3.21
3391 4439 1.070105 TTCGGCGCCAACTAACTGT 59.930 52.632 28.98 0.00 0.00 3.55
3392 4440 0.533308 TTCGGCGCCAACTAACTGTT 60.533 50.000 28.98 0.00 39.92 3.16
3393 4441 0.947180 TCGGCGCCAACTAACTGTTC 60.947 55.000 28.98 0.00 36.63 3.18
3394 4442 0.949105 CGGCGCCAACTAACTGTTCT 60.949 55.000 28.98 0.00 36.63 3.01
3395 4443 1.670674 CGGCGCCAACTAACTGTTCTA 60.671 52.381 28.98 0.00 36.63 2.10
3629 4684 9.239551 ACCCAAAATAAGGAATAAGTAGTGTTC 57.760 33.333 0.00 0.00 0.00 3.18
3832 4887 1.305201 TCTGTTCGCCAACAAACTCC 58.695 50.000 0.00 0.00 42.13 3.85
4218 5274 1.747355 AGCCACTTGCATTGCATCTAC 59.253 47.619 12.95 1.87 44.83 2.59
4219 5275 1.747355 GCCACTTGCATTGCATCTACT 59.253 47.619 12.95 0.00 38.76 2.57
4220 5276 2.223433 GCCACTTGCATTGCATCTACTC 60.223 50.000 12.95 0.00 38.76 2.59
4221 5277 2.357009 CCACTTGCATTGCATCTACTCC 59.643 50.000 12.95 0.00 38.76 3.85
4222 5278 2.357009 CACTTGCATTGCATCTACTCCC 59.643 50.000 12.95 0.00 38.76 4.30
4223 5279 2.240667 ACTTGCATTGCATCTACTCCCT 59.759 45.455 12.95 0.00 38.76 4.20
4224 5280 2.627515 TGCATTGCATCTACTCCCTC 57.372 50.000 7.38 0.00 31.71 4.30
4225 5281 1.141657 TGCATTGCATCTACTCCCTCC 59.858 52.381 7.38 0.00 31.71 4.30
4226 5282 1.875576 GCATTGCATCTACTCCCTCCG 60.876 57.143 3.15 0.00 0.00 4.63
4227 5283 1.414181 CATTGCATCTACTCCCTCCGT 59.586 52.381 0.00 0.00 0.00 4.69
4228 5284 1.568504 TTGCATCTACTCCCTCCGTT 58.431 50.000 0.00 0.00 0.00 4.44
4229 5285 1.112113 TGCATCTACTCCCTCCGTTC 58.888 55.000 0.00 0.00 0.00 3.95
4230 5286 0.389757 GCATCTACTCCCTCCGTTCC 59.610 60.000 0.00 0.00 0.00 3.62
4231 5287 0.669077 CATCTACTCCCTCCGTTCCG 59.331 60.000 0.00 0.00 0.00 4.30
4232 5288 0.549950 ATCTACTCCCTCCGTTCCGA 59.450 55.000 0.00 0.00 0.00 4.55
4233 5289 0.329261 TCTACTCCCTCCGTTCCGAA 59.671 55.000 0.00 0.00 0.00 4.30
4234 5290 1.064166 TCTACTCCCTCCGTTCCGAAT 60.064 52.381 0.00 0.00 0.00 3.34
4235 5291 1.755380 CTACTCCCTCCGTTCCGAATT 59.245 52.381 0.00 0.00 0.00 2.17
4236 5292 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
4237 5293 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
4238 5294 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
4239 5295 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
4240 5296 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
4241 5297 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
4242 5298 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
4243 5299 2.597305 CTCCGTTCCGAATTACTTGTCG 59.403 50.000 0.00 0.00 37.01 4.35
4244 5300 1.060122 CCGTTCCGAATTACTTGTCGC 59.940 52.381 0.00 0.00 35.93 5.19
4245 5301 1.722464 CGTTCCGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 35.93 5.10
4246 5302 2.222508 CGTTCCGAATTACTTGTCGCAG 60.223 50.000 0.00 0.00 35.93 5.18
4247 5303 2.004583 TCCGAATTACTTGTCGCAGG 57.995 50.000 0.00 0.00 35.93 4.85
4248 5304 1.274167 TCCGAATTACTTGTCGCAGGT 59.726 47.619 0.00 0.91 35.93 4.00
4249 5305 2.492881 TCCGAATTACTTGTCGCAGGTA 59.507 45.455 0.00 0.00 35.93 3.08
4250 5306 3.131577 TCCGAATTACTTGTCGCAGGTAT 59.868 43.478 3.46 0.00 35.93 2.73
4251 5307 3.245284 CCGAATTACTTGTCGCAGGTATG 59.755 47.826 3.46 0.00 35.93 2.39
4252 5308 4.109766 CGAATTACTTGTCGCAGGTATGA 58.890 43.478 3.46 0.00 0.00 2.15
4253 5309 4.565166 CGAATTACTTGTCGCAGGTATGAA 59.435 41.667 3.46 0.00 0.00 2.57
4254 5310 5.234329 CGAATTACTTGTCGCAGGTATGAAT 59.766 40.000 3.46 0.00 0.00 2.57
4255 5311 5.991328 ATTACTTGTCGCAGGTATGAATG 57.009 39.130 3.46 0.00 0.00 2.67
4256 5312 3.334583 ACTTGTCGCAGGTATGAATGT 57.665 42.857 0.00 0.00 0.00 2.71
4257 5313 4.465632 ACTTGTCGCAGGTATGAATGTA 57.534 40.909 0.00 0.00 0.00 2.29
4258 5314 5.023533 ACTTGTCGCAGGTATGAATGTAT 57.976 39.130 0.00 0.00 0.00 2.29
4259 5315 5.050490 ACTTGTCGCAGGTATGAATGTATC 58.950 41.667 0.00 0.00 0.00 2.24
4260 5316 4.937201 TGTCGCAGGTATGAATGTATCT 57.063 40.909 0.00 0.00 0.00 1.98
4261 5317 6.040504 ACTTGTCGCAGGTATGAATGTATCTA 59.959 38.462 0.00 0.00 0.00 1.98
4262 5318 6.013842 TGTCGCAGGTATGAATGTATCTAG 57.986 41.667 0.00 0.00 0.00 2.43
4263 5319 5.768164 TGTCGCAGGTATGAATGTATCTAGA 59.232 40.000 0.00 0.00 0.00 2.43
4264 5320 6.434340 TGTCGCAGGTATGAATGTATCTAGAT 59.566 38.462 10.73 10.73 0.00 1.98
4265 5321 6.749578 GTCGCAGGTATGAATGTATCTAGATG 59.250 42.308 15.79 0.00 0.00 2.90
4266 5322 6.434340 TCGCAGGTATGAATGTATCTAGATGT 59.566 38.462 15.79 0.00 0.00 3.06
4267 5323 7.610305 TCGCAGGTATGAATGTATCTAGATGTA 59.390 37.037 15.79 4.44 0.00 2.29
4268 5324 8.409371 CGCAGGTATGAATGTATCTAGATGTAT 58.591 37.037 15.79 6.61 0.00 2.29
4297 5353 8.693120 AGTTCTAGATACATCCATTTCTACGA 57.307 34.615 0.00 0.00 0.00 3.43
4298 5354 8.569641 AGTTCTAGATACATCCATTTCTACGAC 58.430 37.037 0.00 0.00 0.00 4.34
4299 5355 7.130303 TCTAGATACATCCATTTCTACGACG 57.870 40.000 0.00 0.00 0.00 5.12
4300 5356 6.932960 TCTAGATACATCCATTTCTACGACGA 59.067 38.462 0.00 0.00 0.00 4.20
4301 5357 6.003234 AGATACATCCATTTCTACGACGAG 57.997 41.667 0.00 0.00 0.00 4.18
4302 5358 5.531659 AGATACATCCATTTCTACGACGAGT 59.468 40.000 0.00 0.00 0.00 4.18
4303 5359 6.709397 AGATACATCCATTTCTACGACGAGTA 59.291 38.462 0.00 0.00 0.00 2.59
4304 5360 5.571784 ACATCCATTTCTACGACGAGTAA 57.428 39.130 0.00 0.00 34.45 2.24
4305 5361 6.145338 ACATCCATTTCTACGACGAGTAAT 57.855 37.500 0.00 0.00 34.45 1.89
4306 5362 6.570692 ACATCCATTTCTACGACGAGTAATT 58.429 36.000 0.00 0.00 34.45 1.40
4307 5363 7.039882 ACATCCATTTCTACGACGAGTAATTT 58.960 34.615 0.00 0.00 34.45 1.82
4308 5364 6.880822 TCCATTTCTACGACGAGTAATTTG 57.119 37.500 0.00 0.00 34.45 2.32
4309 5365 5.808540 TCCATTTCTACGACGAGTAATTTGG 59.191 40.000 0.00 0.59 34.45 3.28
4310 5366 5.808540 CCATTTCTACGACGAGTAATTTGGA 59.191 40.000 0.00 0.00 34.45 3.53
4311 5367 6.311935 CCATTTCTACGACGAGTAATTTGGAA 59.688 38.462 0.00 0.00 34.45 3.53
4312 5368 6.695292 TTTCTACGACGAGTAATTTGGAAC 57.305 37.500 0.00 0.00 34.45 3.62
4313 5369 4.406069 TCTACGACGAGTAATTTGGAACG 58.594 43.478 0.00 0.00 34.45 3.95
4314 5370 2.331194 ACGACGAGTAATTTGGAACGG 58.669 47.619 0.00 0.00 0.00 4.44
4315 5371 2.030007 ACGACGAGTAATTTGGAACGGA 60.030 45.455 0.00 0.00 0.00 4.69
4316 5372 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
4317 5373 7.051690 TACGACGAGTAATTTGGAACGGAGT 62.052 44.000 0.00 0.00 35.08 3.85
4318 5374 4.672542 CGACGAGTAATTTGGAACGGAGTA 60.673 45.833 0.00 0.00 45.00 2.59
4352 5426 6.217294 GTCCATATCTTAGCCTATAATCGCC 58.783 44.000 0.00 0.00 0.00 5.54
4382 5456 5.290493 ACTGTTCTGTTGTCCATGTCTTA 57.710 39.130 0.00 0.00 0.00 2.10
4399 5473 8.184192 CCATGTCTTATGTTTAATCAGGTTGAC 58.816 37.037 0.00 0.00 0.00 3.18
4457 5535 0.468226 TTGCGGCTTACATCCCTAGG 59.532 55.000 0.06 0.06 0.00 3.02
4471 5549 5.222254 ACATCCCTAGGGCTTAGTTTCAAAA 60.222 40.000 24.42 0.58 34.68 2.44
4511 5589 3.131577 GGAATGCATCAGGATTTCTTGCA 59.868 43.478 0.00 0.00 46.22 4.08
4529 5607 7.333528 TCTTGCAGCTAAGTTTTATAATGGG 57.666 36.000 0.00 0.00 0.00 4.00
4533 5611 5.510671 CAGCTAAGTTTTATAATGGGCACG 58.489 41.667 0.00 0.00 0.00 5.34
4605 5690 1.215423 GCACCTTCCATTGGATAGGGT 59.785 52.381 25.17 20.69 35.67 4.34
4685 5888 2.257034 GCACAAAATCTTAGCAGCAGC 58.743 47.619 0.00 0.00 42.56 5.25
4687 5890 3.675228 GCACAAAATCTTAGCAGCAGCAT 60.675 43.478 3.17 0.00 45.49 3.79
4688 5891 4.103357 CACAAAATCTTAGCAGCAGCATC 58.897 43.478 3.17 0.00 45.49 3.91
4689 5892 3.760151 ACAAAATCTTAGCAGCAGCATCA 59.240 39.130 3.17 0.00 45.49 3.07
4694 5906 1.028330 TTAGCAGCAGCATCAGCACC 61.028 55.000 3.17 0.00 45.49 5.01
4709 5921 4.265507 ACCGGGGGTTGGGAGAGT 62.266 66.667 6.32 0.00 27.29 3.24
4735 5952 1.617947 AAGATCACCCGCTCCACCTC 61.618 60.000 0.00 0.00 0.00 3.85
4736 5953 2.039624 ATCACCCGCTCCACCTCT 59.960 61.111 0.00 0.00 0.00 3.69
4737 5954 2.303549 GATCACCCGCTCCACCTCTG 62.304 65.000 0.00 0.00 0.00 3.35
4738 5955 3.314331 CACCCGCTCCACCTCTGT 61.314 66.667 0.00 0.00 0.00 3.41
4739 5956 2.526873 ACCCGCTCCACCTCTGTT 60.527 61.111 0.00 0.00 0.00 3.16
4769 5986 3.952323 TCGTAGATGGAACGAGGATCTTT 59.048 43.478 0.00 0.00 43.90 2.52
4776 5993 2.347731 GAACGAGGATCTTTGACCCAC 58.652 52.381 0.00 0.00 0.00 4.61
4777 5994 1.645710 ACGAGGATCTTTGACCCACT 58.354 50.000 0.00 0.00 0.00 4.00
4821 6099 3.640592 GAAGTTCCTCTTCGAAAGTCGT 58.359 45.455 0.00 0.00 42.26 4.34
4828 6106 5.399858 TCCTCTTCGAAAGTCGTTAAGATG 58.600 41.667 0.00 0.00 41.35 2.90
4830 6108 3.924686 TCTTCGAAAGTCGTTAAGATGGC 59.075 43.478 0.00 0.00 41.35 4.40
4832 6110 2.028839 TCGAAAGTCGTTAAGATGGCCA 60.029 45.455 8.56 8.56 41.35 5.36
4845 6123 1.174712 ATGGCCATATCGGTTGCTGC 61.175 55.000 19.18 0.00 36.97 5.25
4895 6173 1.239968 GGAGGGACACTGCAGCAAAG 61.240 60.000 15.27 3.95 37.51 2.77
4966 6247 0.621862 AGGGTGAAGGGGAGACATCC 60.622 60.000 0.00 0.00 45.85 3.51
4993 6278 7.308951 CGTCCTGGTTTTATCAAGGTTAATGTT 60.309 37.037 0.00 0.00 0.00 2.71
5007 6292 4.124238 GTTAATGTTGATGCGGCCTACTA 58.876 43.478 0.00 0.00 0.00 1.82
5008 6293 2.533266 ATGTTGATGCGGCCTACTAG 57.467 50.000 0.00 0.00 0.00 2.57
5009 6294 1.191535 TGTTGATGCGGCCTACTAGT 58.808 50.000 0.00 0.00 0.00 2.57
5010 6295 1.136305 TGTTGATGCGGCCTACTAGTC 59.864 52.381 0.00 0.00 0.00 2.59
5011 6296 1.136305 GTTGATGCGGCCTACTAGTCA 59.864 52.381 0.00 0.00 0.00 3.41
5012 6297 1.480789 TGATGCGGCCTACTAGTCAA 58.519 50.000 0.00 0.00 0.00 3.18
5013 6298 1.136305 TGATGCGGCCTACTAGTCAAC 59.864 52.381 0.00 0.00 0.00 3.18
5014 6299 1.136305 GATGCGGCCTACTAGTCAACA 59.864 52.381 0.00 0.00 0.00 3.33
5015 6300 0.530744 TGCGGCCTACTAGTCAACAG 59.469 55.000 0.00 0.00 0.00 3.16
5016 6301 0.179108 GCGGCCTACTAGTCAACAGG 60.179 60.000 0.00 1.13 0.00 4.00
5017 6302 1.183549 CGGCCTACTAGTCAACAGGT 58.816 55.000 10.46 0.00 0.00 4.00
5018 6303 1.135083 CGGCCTACTAGTCAACAGGTG 60.135 57.143 10.46 1.62 0.00 4.00
5019 6304 1.207329 GGCCTACTAGTCAACAGGTGG 59.793 57.143 10.46 0.00 0.00 4.61
5020 6305 1.207329 GCCTACTAGTCAACAGGTGGG 59.793 57.143 10.46 0.00 34.20 4.61
5021 6306 1.831736 CCTACTAGTCAACAGGTGGGG 59.168 57.143 0.00 0.00 0.00 4.96
5022 6307 2.559026 CCTACTAGTCAACAGGTGGGGA 60.559 54.545 0.00 0.00 0.00 4.81
5023 6308 1.645710 ACTAGTCAACAGGTGGGGAG 58.354 55.000 0.00 0.00 0.00 4.30
5024 6309 1.132817 ACTAGTCAACAGGTGGGGAGT 60.133 52.381 0.00 0.00 0.00 3.85
5025 6310 1.978580 CTAGTCAACAGGTGGGGAGTT 59.021 52.381 0.00 0.00 0.00 3.01
5026 6311 0.765510 AGTCAACAGGTGGGGAGTTC 59.234 55.000 0.00 0.00 0.00 3.01
5027 6312 0.765510 GTCAACAGGTGGGGAGTTCT 59.234 55.000 0.00 0.00 0.00 3.01
5028 6313 1.143073 GTCAACAGGTGGGGAGTTCTT 59.857 52.381 0.00 0.00 0.00 2.52
5029 6314 1.850345 TCAACAGGTGGGGAGTTCTTT 59.150 47.619 0.00 0.00 0.00 2.52
5030 6315 2.158667 TCAACAGGTGGGGAGTTCTTTC 60.159 50.000 0.00 0.00 0.00 2.62
5031 6316 1.821088 ACAGGTGGGGAGTTCTTTCT 58.179 50.000 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 8.519526 CGCCTTAGATTGAAGAATAGAGATACT 58.480 37.037 0.00 0.00 0.00 2.12
11 12 8.301002 ACGCCTTAGATTGAAGAATAGAGATAC 58.699 37.037 0.00 0.00 0.00 2.24
12 13 8.410673 ACGCCTTAGATTGAAGAATAGAGATA 57.589 34.615 0.00 0.00 0.00 1.98
13 14 7.232534 AGACGCCTTAGATTGAAGAATAGAGAT 59.767 37.037 0.00 0.00 0.00 2.75
14 15 6.547880 AGACGCCTTAGATTGAAGAATAGAGA 59.452 38.462 0.00 0.00 0.00 3.10
15 16 6.744112 AGACGCCTTAGATTGAAGAATAGAG 58.256 40.000 0.00 0.00 0.00 2.43
16 17 6.716934 AGACGCCTTAGATTGAAGAATAGA 57.283 37.500 0.00 0.00 0.00 1.98
17 18 9.482627 AATAAGACGCCTTAGATTGAAGAATAG 57.517 33.333 0.00 0.00 38.19 1.73
18 19 9.832445 AAATAAGACGCCTTAGATTGAAGAATA 57.168 29.630 0.00 0.00 38.19 1.75
19 20 8.738645 AAATAAGACGCCTTAGATTGAAGAAT 57.261 30.769 0.00 0.00 38.19 2.40
20 21 9.832445 ATAAATAAGACGCCTTAGATTGAAGAA 57.168 29.630 0.00 0.00 38.19 2.52
21 22 9.832445 AATAAATAAGACGCCTTAGATTGAAGA 57.168 29.630 0.00 0.00 38.19 2.87
32 33 9.662947 ACAGTAGTAAAAATAAATAAGACGCCT 57.337 29.630 0.00 0.00 0.00 5.52
68 69 6.370994 GGAGAGATGCAGGTATCAATAACATG 59.629 42.308 0.00 0.00 0.00 3.21
69 70 6.271857 AGGAGAGATGCAGGTATCAATAACAT 59.728 38.462 0.00 0.00 0.00 2.71
70 71 5.604231 AGGAGAGATGCAGGTATCAATAACA 59.396 40.000 0.00 0.00 0.00 2.41
71 72 5.931146 CAGGAGAGATGCAGGTATCAATAAC 59.069 44.000 0.00 0.00 0.00 1.89
72 73 5.840693 TCAGGAGAGATGCAGGTATCAATAA 59.159 40.000 0.00 0.00 0.00 1.40
73 74 5.397360 TCAGGAGAGATGCAGGTATCAATA 58.603 41.667 0.00 0.00 0.00 1.90
74 75 4.229639 TCAGGAGAGATGCAGGTATCAAT 58.770 43.478 0.00 0.00 0.00 2.57
75 76 3.646534 TCAGGAGAGATGCAGGTATCAA 58.353 45.455 0.00 0.00 0.00 2.57
76 77 3.319031 TCAGGAGAGATGCAGGTATCA 57.681 47.619 0.00 0.00 0.00 2.15
77 78 3.195396 GGATCAGGAGAGATGCAGGTATC 59.805 52.174 0.00 0.00 36.49 2.24
78 79 3.172339 GGATCAGGAGAGATGCAGGTAT 58.828 50.000 0.00 0.00 36.49 2.73
79 80 2.603021 GGATCAGGAGAGATGCAGGTA 58.397 52.381 0.00 0.00 36.49 3.08
80 81 1.422531 GGATCAGGAGAGATGCAGGT 58.577 55.000 0.00 0.00 36.49 4.00
81 82 0.686224 GGGATCAGGAGAGATGCAGG 59.314 60.000 0.00 0.00 38.01 4.85
82 83 1.421480 TGGGATCAGGAGAGATGCAG 58.579 55.000 0.00 0.00 38.01 4.41
83 84 1.976404 GATGGGATCAGGAGAGATGCA 59.024 52.381 0.00 0.00 38.01 3.96
84 85 2.027929 CAGATGGGATCAGGAGAGATGC 60.028 54.545 0.00 0.00 35.83 3.91
85 86 3.508426 TCAGATGGGATCAGGAGAGATG 58.492 50.000 0.00 0.00 0.00 2.90
86 87 3.919304 TCAGATGGGATCAGGAGAGAT 57.081 47.619 0.00 0.00 0.00 2.75
87 88 3.116823 ACATCAGATGGGATCAGGAGAGA 60.117 47.826 15.13 0.00 33.60 3.10
88 89 3.241156 ACATCAGATGGGATCAGGAGAG 58.759 50.000 15.13 0.00 33.60 3.20
89 90 3.341318 ACATCAGATGGGATCAGGAGA 57.659 47.619 15.13 0.00 33.60 3.71
90 91 4.414677 TCTACATCAGATGGGATCAGGAG 58.585 47.826 15.13 0.00 33.60 3.69
91 92 4.475919 TCTACATCAGATGGGATCAGGA 57.524 45.455 15.13 0.00 33.60 3.86
92 93 5.557576 TTTCTACATCAGATGGGATCAGG 57.442 43.478 15.13 0.00 31.77 3.86
93 94 9.736414 ATTTATTTCTACATCAGATGGGATCAG 57.264 33.333 15.13 4.11 31.77 2.90
130 131 9.093970 GTAATTAGCACAAAATTATGGGGAAAC 57.906 33.333 0.00 0.00 32.87 2.78
131 132 9.041354 AGTAATTAGCACAAAATTATGGGGAAA 57.959 29.630 0.00 0.00 32.87 3.13
132 133 8.602472 AGTAATTAGCACAAAATTATGGGGAA 57.398 30.769 0.00 0.00 32.87 3.97
133 134 8.058847 AGAGTAATTAGCACAAAATTATGGGGA 58.941 33.333 0.00 0.00 32.87 4.81
134 135 8.237811 AGAGTAATTAGCACAAAATTATGGGG 57.762 34.615 0.00 0.00 32.87 4.96
139 140 9.169592 GGGTGTAGAGTAATTAGCACAAAATTA 57.830 33.333 0.00 0.00 0.00 1.40
140 141 7.148306 CGGGTGTAGAGTAATTAGCACAAAATT 60.148 37.037 0.00 0.00 0.00 1.82
141 142 6.315393 CGGGTGTAGAGTAATTAGCACAAAAT 59.685 38.462 0.00 0.00 0.00 1.82
142 143 5.640357 CGGGTGTAGAGTAATTAGCACAAAA 59.360 40.000 0.00 0.00 0.00 2.44
143 144 5.172934 CGGGTGTAGAGTAATTAGCACAAA 58.827 41.667 0.00 0.00 0.00 2.83
144 145 4.221262 ACGGGTGTAGAGTAATTAGCACAA 59.779 41.667 0.00 0.00 0.00 3.33
145 146 3.765511 ACGGGTGTAGAGTAATTAGCACA 59.234 43.478 0.00 0.00 0.00 4.57
146 147 4.097589 AGACGGGTGTAGAGTAATTAGCAC 59.902 45.833 0.00 0.00 0.00 4.40
147 148 4.275810 AGACGGGTGTAGAGTAATTAGCA 58.724 43.478 0.00 0.00 0.00 3.49
148 149 4.915158 AGACGGGTGTAGAGTAATTAGC 57.085 45.455 0.00 0.00 0.00 3.09
149 150 6.294473 TCCTAGACGGGTGTAGAGTAATTAG 58.706 44.000 4.70 0.00 0.00 1.73
150 151 6.252599 TCCTAGACGGGTGTAGAGTAATTA 57.747 41.667 4.70 0.00 0.00 1.40
151 152 5.121380 TCCTAGACGGGTGTAGAGTAATT 57.879 43.478 4.70 0.00 0.00 1.40
152 153 4.785346 TCCTAGACGGGTGTAGAGTAAT 57.215 45.455 4.70 0.00 0.00 1.89
153 154 4.785346 ATCCTAGACGGGTGTAGAGTAA 57.215 45.455 4.70 0.00 0.00 2.24
154 155 4.785346 AATCCTAGACGGGTGTAGAGTA 57.215 45.455 4.70 0.00 0.00 2.59
155 156 3.666345 AATCCTAGACGGGTGTAGAGT 57.334 47.619 4.70 0.00 0.00 3.24
156 157 5.340439 AAAAATCCTAGACGGGTGTAGAG 57.660 43.478 4.70 0.00 0.00 2.43
157 158 7.418254 GGAATAAAAATCCTAGACGGGTGTAGA 60.418 40.741 4.70 0.00 33.98 2.59
158 159 6.704937 GGAATAAAAATCCTAGACGGGTGTAG 59.295 42.308 0.00 0.00 33.98 2.74
159 160 6.408434 GGGAATAAAAATCCTAGACGGGTGTA 60.408 42.308 0.00 0.00 37.14 2.90
160 161 5.434408 GGAATAAAAATCCTAGACGGGTGT 58.566 41.667 0.00 0.00 33.98 4.16
161 162 4.820173 GGGAATAAAAATCCTAGACGGGTG 59.180 45.833 0.00 0.00 37.14 4.61
162 163 4.141321 GGGGAATAAAAATCCTAGACGGGT 60.141 45.833 0.00 0.00 37.14 5.28
163 164 4.395625 GGGGAATAAAAATCCTAGACGGG 58.604 47.826 0.00 0.00 37.14 5.28
164 165 4.395625 GGGGGAATAAAAATCCTAGACGG 58.604 47.826 0.00 0.00 37.14 4.79
165 166 4.062991 CGGGGGAATAAAAATCCTAGACG 58.937 47.826 0.00 0.00 37.14 4.18
166 167 5.045012 ACGGGGGAATAAAAATCCTAGAC 57.955 43.478 0.00 0.00 37.14 2.59
167 168 5.720486 AACGGGGGAATAAAAATCCTAGA 57.280 39.130 0.00 0.00 37.14 2.43
168 169 5.889289 TGAAACGGGGGAATAAAAATCCTAG 59.111 40.000 0.00 0.00 37.14 3.02
169 170 5.828871 TGAAACGGGGGAATAAAAATCCTA 58.171 37.500 0.00 0.00 37.14 2.94
170 171 4.679331 TGAAACGGGGGAATAAAAATCCT 58.321 39.130 0.00 0.00 37.14 3.24
171 172 5.172934 GTTGAAACGGGGGAATAAAAATCC 58.827 41.667 0.00 0.00 36.16 3.01
187 188 0.596341 AATTGCCCGTGCGTTGAAAC 60.596 50.000 0.00 0.00 41.78 2.78
188 189 0.952280 TAATTGCCCGTGCGTTGAAA 59.048 45.000 0.00 0.00 41.78 2.69
189 190 0.519519 CTAATTGCCCGTGCGTTGAA 59.480 50.000 0.00 0.00 41.78 2.69
190 191 0.604243 ACTAATTGCCCGTGCGTTGA 60.604 50.000 0.00 0.00 41.78 3.18
191 192 1.080298 TACTAATTGCCCGTGCGTTG 58.920 50.000 0.00 0.00 41.78 4.10
192 193 2.032680 ATACTAATTGCCCGTGCGTT 57.967 45.000 0.00 0.00 41.78 4.84
193 194 1.668751 CAATACTAATTGCCCGTGCGT 59.331 47.619 0.00 0.00 41.78 5.24
194 195 1.668751 ACAATACTAATTGCCCGTGCG 59.331 47.619 0.00 0.00 45.41 5.34
195 196 3.775661 AACAATACTAATTGCCCGTGC 57.224 42.857 0.00 0.00 45.41 5.34
196 197 6.371809 ACATAACAATACTAATTGCCCGTG 57.628 37.500 0.00 0.00 45.41 4.94
197 198 8.685838 AATACATAACAATACTAATTGCCCGT 57.314 30.769 0.00 0.00 45.41 5.28
212 213 9.878667 TCGAGGAAATGTTCTAAATACATAACA 57.121 29.630 0.00 0.00 35.26 2.41
217 218 9.280174 ACTTTTCGAGGAAATGTTCTAAATACA 57.720 29.630 4.40 0.00 36.84 2.29
220 221 8.727910 GGTACTTTTCGAGGAAATGTTCTAAAT 58.272 33.333 12.78 0.00 39.46 1.40
221 222 7.716123 TGGTACTTTTCGAGGAAATGTTCTAAA 59.284 33.333 12.78 0.00 39.46 1.85
222 223 7.218614 TGGTACTTTTCGAGGAAATGTTCTAA 58.781 34.615 12.78 2.40 39.46 2.10
223 224 6.761312 TGGTACTTTTCGAGGAAATGTTCTA 58.239 36.000 12.78 5.69 39.46 2.10
224 225 5.617252 TGGTACTTTTCGAGGAAATGTTCT 58.383 37.500 12.78 0.00 39.46 3.01
225 226 5.934935 TGGTACTTTTCGAGGAAATGTTC 57.065 39.130 12.78 9.03 39.46 3.18
226 227 5.591067 TGTTGGTACTTTTCGAGGAAATGTT 59.409 36.000 12.78 1.79 39.46 2.71
227 228 5.127491 TGTTGGTACTTTTCGAGGAAATGT 58.873 37.500 12.34 12.34 40.92 2.71
228 229 5.682943 TGTTGGTACTTTTCGAGGAAATG 57.317 39.130 0.00 3.34 34.35 2.32
229 230 5.009310 GGTTGTTGGTACTTTTCGAGGAAAT 59.991 40.000 0.00 0.00 31.34 2.17
230 231 4.336153 GGTTGTTGGTACTTTTCGAGGAAA 59.664 41.667 0.00 0.00 0.00 3.13
231 232 3.878699 GGTTGTTGGTACTTTTCGAGGAA 59.121 43.478 0.00 0.00 0.00 3.36
232 233 3.118334 TGGTTGTTGGTACTTTTCGAGGA 60.118 43.478 0.00 0.00 0.00 3.71
233 234 3.207778 TGGTTGTTGGTACTTTTCGAGG 58.792 45.455 0.00 0.00 0.00 4.63
234 235 3.303791 GCTGGTTGTTGGTACTTTTCGAG 60.304 47.826 0.00 0.00 0.00 4.04
235 236 2.614983 GCTGGTTGTTGGTACTTTTCGA 59.385 45.455 0.00 0.00 0.00 3.71
236 237 2.616842 AGCTGGTTGTTGGTACTTTTCG 59.383 45.455 0.00 0.00 0.00 3.46
237 238 3.243401 CCAGCTGGTTGTTGGTACTTTTC 60.243 47.826 25.53 0.00 41.43 2.29
238 239 2.693074 CCAGCTGGTTGTTGGTACTTTT 59.307 45.455 25.53 0.00 41.43 2.27
239 240 2.306847 CCAGCTGGTTGTTGGTACTTT 58.693 47.619 25.53 0.00 41.43 2.66
240 241 1.478654 CCCAGCTGGTTGTTGGTACTT 60.479 52.381 30.63 0.00 44.36 2.24
241 242 0.110486 CCCAGCTGGTTGTTGGTACT 59.890 55.000 30.63 0.00 44.36 2.73
242 243 1.524008 GCCCAGCTGGTTGTTGGTAC 61.524 60.000 30.63 5.27 44.36 3.34
243 244 1.228429 GCCCAGCTGGTTGTTGGTA 60.228 57.895 30.63 0.00 44.36 3.25
244 245 2.521708 GCCCAGCTGGTTGTTGGT 60.522 61.111 30.63 0.00 44.36 3.67
245 246 3.305516 GGCCCAGCTGGTTGTTGG 61.306 66.667 30.63 15.52 45.27 3.77
246 247 3.673484 CGGCCCAGCTGGTTGTTG 61.673 66.667 30.63 16.26 36.04 3.33
321 322 2.882366 GCGGCTATGTAACGCCTGC 61.882 63.158 0.00 0.00 46.92 4.85
328 329 3.134879 CGGGGAGCGGCTATGTAA 58.865 61.111 0.60 0.00 0.00 2.41
366 367 0.966370 AGGGAACGAGGAAGACGAGG 60.966 60.000 0.00 0.00 34.70 4.63
385 386 1.478510 GAGGAAGATGAGCGAGTTCCA 59.521 52.381 2.97 0.00 40.92 3.53
386 387 1.535015 CGAGGAAGATGAGCGAGTTCC 60.535 57.143 0.00 0.00 39.08 3.62
436 437 1.830408 CAGGTAGGAGGCGGAGAGG 60.830 68.421 0.00 0.00 0.00 3.69
437 438 2.494530 GCAGGTAGGAGGCGGAGAG 61.495 68.421 0.00 0.00 0.00 3.20
438 439 2.442272 GCAGGTAGGAGGCGGAGA 60.442 66.667 0.00 0.00 0.00 3.71
439 440 2.443016 AGCAGGTAGGAGGCGGAG 60.443 66.667 0.00 0.00 0.00 4.63
440 441 2.589610 ATCAGCAGGTAGGAGGCGGA 62.590 60.000 0.00 0.00 36.26 5.54
441 442 1.690219 AATCAGCAGGTAGGAGGCGG 61.690 60.000 0.00 0.00 0.00 6.13
442 443 0.531532 CAATCAGCAGGTAGGAGGCG 60.532 60.000 0.00 0.00 0.00 5.52
443 444 0.179034 CCAATCAGCAGGTAGGAGGC 60.179 60.000 0.00 0.00 0.00 4.70
524 525 0.105039 GGCCGATTCCTCACTACAGG 59.895 60.000 0.00 0.00 34.40 4.00
563 787 2.593956 GGAAGACGGAAGGGGCACT 61.594 63.158 0.00 0.00 0.00 4.40
630 854 0.251341 AGCAGATGAAAAAGGCCGGT 60.251 50.000 1.90 0.00 0.00 5.28
695 919 1.438710 CAGCAAAAGCGGTTCGACG 60.439 57.895 0.00 0.00 0.00 5.12
696 920 0.028902 AACAGCAAAAGCGGTTCGAC 59.971 50.000 0.00 0.00 0.00 4.20
701 925 2.021457 ACAACTAACAGCAAAAGCGGT 58.979 42.857 0.00 0.00 0.00 5.68
766 1000 2.685897 GCCATAATAACCCGAAACAGCA 59.314 45.455 0.00 0.00 0.00 4.41
805 1041 2.979813 GCAGCGGTGACTATTTTGTTTG 59.020 45.455 20.69 0.00 0.00 2.93
850 1086 3.861276 TCCAGTTCCATGTGTACTACG 57.139 47.619 0.00 0.00 0.00 3.51
851 1087 6.313905 CAGAATTCCAGTTCCATGTGTACTAC 59.686 42.308 0.65 0.00 0.00 2.73
852 1088 6.013725 ACAGAATTCCAGTTCCATGTGTACTA 60.014 38.462 0.65 0.00 0.00 1.82
853 1089 5.221925 ACAGAATTCCAGTTCCATGTGTACT 60.222 40.000 0.65 0.00 0.00 2.73
854 1090 5.003804 ACAGAATTCCAGTTCCATGTGTAC 58.996 41.667 0.65 0.00 0.00 2.90
855 1091 5.221823 TGACAGAATTCCAGTTCCATGTGTA 60.222 40.000 0.65 0.00 0.00 2.90
856 1092 4.074970 GACAGAATTCCAGTTCCATGTGT 58.925 43.478 0.65 0.00 0.00 3.72
857 1093 4.074259 TGACAGAATTCCAGTTCCATGTG 58.926 43.478 0.65 0.00 0.00 3.21
933 1170 3.084039 TCAGAAACAGATGAATGGTGCC 58.916 45.455 0.00 0.00 0.00 5.01
956 1193 5.030147 TGTTTGAGGTAGGGTACAGATCAT 58.970 41.667 0.00 0.00 0.00 2.45
997 1234 2.034124 AGTGTCTTGTGCAGCCATTTT 58.966 42.857 0.00 0.00 0.00 1.82
998 1235 1.610522 GAGTGTCTTGTGCAGCCATTT 59.389 47.619 0.00 0.00 0.00 2.32
1139 1378 7.811713 TGAAAAACATTTCATGCGATTGTGATA 59.188 29.630 0.11 0.00 36.15 2.15
1152 1391 5.011840 TCAGATGGGCATGAAAAACATTTCA 59.988 36.000 6.47 6.47 44.06 2.69
1164 1403 6.845758 AATTGGTAATATCAGATGGGCATG 57.154 37.500 0.00 0.00 0.00 4.06
1214 1454 8.451908 AGTTGAACTTTGAGCACTATTTAACT 57.548 30.769 0.00 0.00 0.00 2.24
1251 1491 4.272489 TGCTGATATTTATAGGCCATGGC 58.728 43.478 29.47 29.47 41.06 4.40
1257 1497 9.712305 TTTCTTACTCTGCTGATATTTATAGGC 57.288 33.333 0.00 0.00 0.00 3.93
1313 1553 9.778741 ATAAGAGAATTTCGGACATATAGCAAA 57.221 29.630 0.00 0.00 0.00 3.68
1337 1577 1.609555 GTGTCCAAACCGGTGCAAATA 59.390 47.619 8.52 0.00 35.57 1.40
1480 1722 5.386958 AAGTTGTACTAGATCAGCGACAA 57.613 39.130 0.00 2.98 33.29 3.18
1504 1746 5.170270 CGCCGATTTAGTACAACGTTAGTAG 59.830 44.000 0.00 0.00 0.00 2.57
1525 1767 2.161609 CAGTCCCAAAATAAGTGTCGCC 59.838 50.000 0.00 0.00 0.00 5.54
1593 2122 6.478673 CCCACCAAAATCTTGTTTCAAGTAAC 59.521 38.462 8.93 0.00 0.00 2.50
1601 2130 6.000246 ACAATTCCCACCAAAATCTTGTTT 58.000 33.333 0.00 0.00 0.00 2.83
1680 2209 3.315191 GGCACATAGTTCACAACAACAGT 59.685 43.478 0.00 0.00 0.00 3.55
1693 2222 6.476378 AGTCTGAAAAATGTAGGCACATAGT 58.524 36.000 3.56 0.00 44.83 2.12
1706 2235 5.048852 GCTTCTTCTGCTGAGTCTGAAAAAT 60.049 40.000 0.47 0.00 0.00 1.82
1898 2428 0.254178 ACTCACATGCTTAGGGCCAG 59.746 55.000 6.18 0.00 40.92 4.85
2062 2606 8.281212 TGTTGCTCTAATAATTCCTTCCTTTC 57.719 34.615 0.00 0.00 0.00 2.62
2091 2635 1.808945 GCACATCTGGTTCAAGGTCAG 59.191 52.381 0.00 0.00 0.00 3.51
2097 2641 2.228582 CGAATTGGCACATCTGGTTCAA 59.771 45.455 0.00 0.00 39.30 2.69
2108 2652 3.689649 AGTGAAAGATACCGAATTGGCAC 59.310 43.478 0.00 0.00 43.94 5.01
2109 2653 3.689161 CAGTGAAAGATACCGAATTGGCA 59.311 43.478 0.00 0.00 43.94 4.92
2110 2654 3.938963 TCAGTGAAAGATACCGAATTGGC 59.061 43.478 0.00 0.00 43.94 4.52
2122 2667 7.257790 TCCAGGAATAAGAATCAGTGAAAGA 57.742 36.000 0.00 0.00 0.00 2.52
2159 2704 5.423610 TCTCAGAGGTCCAGAAATCCTAAAG 59.576 44.000 0.00 0.00 0.00 1.85
2189 2734 2.166829 AGGCGAATGGTGCATAAAACA 58.833 42.857 0.00 0.00 0.00 2.83
2232 2777 3.182967 GTCTGAATCGCGAGACAGAAAT 58.817 45.455 33.28 8.88 42.53 2.17
2238 2783 0.985549 GTGTGTCTGAATCGCGAGAC 59.014 55.000 16.66 16.69 46.97 3.36
2241 2786 2.931512 TATGTGTGTCTGAATCGCGA 57.068 45.000 13.09 13.09 0.00 5.87
2242 2787 4.266157 CAAATATGTGTGTCTGAATCGCG 58.734 43.478 0.00 0.00 0.00 5.87
2243 2788 4.031028 GCAAATATGTGTGTCTGAATCGC 58.969 43.478 0.00 0.00 0.00 4.58
2244 2789 5.475273 AGCAAATATGTGTGTCTGAATCG 57.525 39.130 0.00 0.00 0.00 3.34
2245 2790 7.065085 ACTGTAGCAAATATGTGTGTCTGAATC 59.935 37.037 0.00 0.00 0.00 2.52
2246 2791 6.881065 ACTGTAGCAAATATGTGTGTCTGAAT 59.119 34.615 0.00 0.00 0.00 2.57
2247 2792 6.230472 ACTGTAGCAAATATGTGTGTCTGAA 58.770 36.000 0.00 0.00 0.00 3.02
2248 2793 5.793817 ACTGTAGCAAATATGTGTGTCTGA 58.206 37.500 0.00 0.00 0.00 3.27
2249 2794 7.776933 ATACTGTAGCAAATATGTGTGTCTG 57.223 36.000 0.00 0.00 0.00 3.51
2250 2795 7.824289 ACAATACTGTAGCAAATATGTGTGTCT 59.176 33.333 0.00 0.00 32.54 3.41
2251 2796 7.974675 ACAATACTGTAGCAAATATGTGTGTC 58.025 34.615 0.00 0.00 32.54 3.67
2252 2797 7.201522 CGACAATACTGTAGCAAATATGTGTGT 60.202 37.037 0.00 0.00 35.30 3.72
2253 2798 7.119360 CGACAATACTGTAGCAAATATGTGTG 58.881 38.462 0.00 0.00 35.30 3.82
2254 2799 6.816640 ACGACAATACTGTAGCAAATATGTGT 59.183 34.615 0.00 0.00 35.30 3.72
2276 2904 0.466372 TGTTTGGTTCCCATGCACGA 60.466 50.000 0.00 0.00 31.53 4.35
2278 2906 1.338011 CCATGTTTGGTTCCCATGCAC 60.338 52.381 0.00 0.00 38.30 4.57
2294 2922 9.311916 TCAGAAATTGTTAAAAACAGTTCCATG 57.688 29.630 11.56 0.00 39.95 3.66
2341 2969 4.463539 TGAACTACATAGGAAACCGTAGCA 59.536 41.667 0.00 0.00 35.76 3.49
2346 2974 7.241376 GTCAATTTGAACTACATAGGAAACCG 58.759 38.462 0.00 0.00 0.00 4.44
2348 2976 8.237267 CAGGTCAATTTGAACTACATAGGAAAC 58.763 37.037 16.34 0.00 43.78 2.78
2358 2986 9.179909 TGTAAAGAAACAGGTCAATTTGAACTA 57.820 29.630 16.34 0.00 43.78 2.24
2422 3050 7.581213 TGATAAAGGCGAATATCCATTTGTT 57.419 32.000 0.00 0.00 0.00 2.83
2442 3070 5.801380 CATCCATGGAGTGATCACATGATA 58.199 41.667 27.02 13.35 43.46 2.15
2448 3076 2.634815 AGCATCCATGGAGTGATCAC 57.365 50.000 21.33 18.47 0.00 3.06
2558 3188 1.064758 ACAGTTGCACACCCTTCAAGA 60.065 47.619 0.00 0.00 0.00 3.02
2598 3230 1.271656 CTGAAAAGGCAAAGCTCCTGG 59.728 52.381 0.00 0.00 33.43 4.45
2618 3656 2.498078 ACTGGCCAGCTCTTACTCTTAC 59.502 50.000 33.06 0.00 0.00 2.34
2627 3668 1.771255 CCCTATTAACTGGCCAGCTCT 59.229 52.381 33.06 19.30 0.00 4.09
2630 3676 2.729028 TTCCCTATTAACTGGCCAGC 57.271 50.000 33.06 0.00 0.00 4.85
2676 3722 0.827368 TCAGTGCTGGTGTGTGTGTA 59.173 50.000 0.00 0.00 0.00 2.90
2693 3739 4.819761 GCCTGGTGCGCGATCTCA 62.820 66.667 12.10 0.00 0.00 3.27
2825 3871 0.674895 GCTTGGGCGACTGAGTCATT 60.675 55.000 13.67 0.00 32.09 2.57
2827 3873 2.038814 TTGCTTGGGCGACTGAGTCA 62.039 55.000 13.67 0.00 42.25 3.41
2837 3883 2.328099 CGTCTCTGGTTGCTTGGGC 61.328 63.158 0.00 0.00 39.26 5.36
2862 3908 3.123284 CCAAAAACTGTTGTGCTGTTGTG 59.877 43.478 0.00 0.00 38.88 3.33
2896 3942 7.493320 CAGTGTGTGTTTTAGGTTAGTAAGTCA 59.507 37.037 0.00 0.00 0.00 3.41
2904 3950 4.453751 GGGTCAGTGTGTGTTTTAGGTTA 58.546 43.478 0.00 0.00 0.00 2.85
2919 3965 2.681778 CTCTGCCTCGGGGTCAGT 60.682 66.667 20.60 0.00 37.71 3.41
2933 3979 2.581354 CGGCTTGCCTAGTGCTCT 59.419 61.111 10.12 0.00 42.00 4.09
3005 4051 4.923942 ATGGATGCTGGAGCGGCG 62.924 66.667 0.51 0.51 45.83 6.46
3032 4078 1.135053 GTCTTCTTAGGGTGTCGGCTC 60.135 57.143 0.00 0.00 0.00 4.70
3078 4124 1.685765 CCTCACCCGATGTGGAGGA 60.686 63.158 0.00 0.00 43.59 3.71
3140 4186 2.741985 TTGCCATGTCAGCGTCCG 60.742 61.111 0.00 0.00 0.00 4.79
3165 4211 3.226777 GCCTAGCCAGAGAAGACTATCA 58.773 50.000 0.00 0.00 0.00 2.15
3263 4311 2.561569 CTCCAGGTGAACGTTCAAGTT 58.438 47.619 31.20 17.00 39.21 2.66
3285 4333 5.312120 TCTCGAAGTCTCTGGTATTGAAC 57.688 43.478 0.00 0.00 0.00 3.18
3309 4357 2.380084 TCGTGGGTGCTCTATTTCAC 57.620 50.000 0.00 0.00 0.00 3.18
3372 4420 1.226030 ACAGTTAGTTGGCGCCGAAC 61.226 55.000 20.60 23.49 0.00 3.95
3373 4421 0.533308 AACAGTTAGTTGGCGCCGAA 60.533 50.000 20.60 12.78 39.49 4.30
3383 4431 6.827727 ACACAAGGTGAATAGAACAGTTAGT 58.172 36.000 2.98 0.00 36.96 2.24
3391 4439 8.918202 AGACATAAAACACAAGGTGAATAGAA 57.082 30.769 2.98 0.00 36.96 2.10
3392 4440 8.783093 CAAGACATAAAACACAAGGTGAATAGA 58.217 33.333 2.98 0.00 36.96 1.98
3393 4441 8.023128 CCAAGACATAAAACACAAGGTGAATAG 58.977 37.037 2.98 0.00 36.96 1.73
3394 4442 7.040062 CCCAAGACATAAAACACAAGGTGAATA 60.040 37.037 2.98 0.00 36.96 1.75
3395 4443 6.239289 CCCAAGACATAAAACACAAGGTGAAT 60.239 38.462 2.98 0.00 36.96 2.57
3629 4684 5.062308 GGTAGAACGTGCAACTTGAAGATAG 59.938 44.000 0.00 0.00 31.75 2.08
3669 4724 6.868864 TGAGTAGAGATGCTTAGTTTTGACAC 59.131 38.462 0.00 0.00 0.00 3.67
3671 4726 8.485976 AATGAGTAGAGATGCTTAGTTTTGAC 57.514 34.615 0.00 0.00 0.00 3.18
3819 4874 3.361977 CCCCGGAGTTTGTTGGCG 61.362 66.667 0.73 0.00 0.00 5.69
3832 4887 1.064685 AGGCCAGAAGAAATAACCCCG 60.065 52.381 5.01 0.00 0.00 5.73
4125 5181 2.562738 GCTGTAAACCAAATCAGGCCTT 59.437 45.455 0.00 0.00 0.00 4.35
4180 5236 6.527423 AGTGGCTTGAAAAATGATCACAAAT 58.473 32.000 0.00 0.00 0.00 2.32
4226 5282 2.093783 CCTGCGACAAGTAATTCGGAAC 59.906 50.000 0.00 0.00 35.02 3.62
4227 5283 2.289195 ACCTGCGACAAGTAATTCGGAA 60.289 45.455 0.00 0.00 35.02 4.30
4228 5284 1.274167 ACCTGCGACAAGTAATTCGGA 59.726 47.619 0.00 0.00 35.73 4.55
4229 5285 1.722011 ACCTGCGACAAGTAATTCGG 58.278 50.000 0.00 0.00 35.73 4.30
4230 5286 4.109766 TCATACCTGCGACAAGTAATTCG 58.890 43.478 0.00 0.00 38.31 3.34
4231 5287 6.037172 ACATTCATACCTGCGACAAGTAATTC 59.963 38.462 0.00 0.00 0.00 2.17
4232 5288 5.880332 ACATTCATACCTGCGACAAGTAATT 59.120 36.000 0.00 0.00 0.00 1.40
4233 5289 5.428253 ACATTCATACCTGCGACAAGTAAT 58.572 37.500 0.00 0.00 0.00 1.89
4234 5290 4.827692 ACATTCATACCTGCGACAAGTAA 58.172 39.130 0.00 0.00 0.00 2.24
4235 5291 4.465632 ACATTCATACCTGCGACAAGTA 57.534 40.909 0.00 0.00 0.00 2.24
4236 5292 3.334583 ACATTCATACCTGCGACAAGT 57.665 42.857 0.00 0.00 0.00 3.16
4237 5293 5.292765 AGATACATTCATACCTGCGACAAG 58.707 41.667 0.00 0.00 0.00 3.16
4238 5294 5.276461 AGATACATTCATACCTGCGACAA 57.724 39.130 0.00 0.00 0.00 3.18
4239 5295 4.937201 AGATACATTCATACCTGCGACA 57.063 40.909 0.00 0.00 0.00 4.35
4240 5296 6.255596 TCTAGATACATTCATACCTGCGAC 57.744 41.667 0.00 0.00 0.00 5.19
4241 5297 6.434340 ACATCTAGATACATTCATACCTGCGA 59.566 38.462 4.54 0.00 0.00 5.10
4242 5298 6.625362 ACATCTAGATACATTCATACCTGCG 58.375 40.000 4.54 0.00 0.00 5.18
4271 5327 9.788889 TCGTAGAAATGGATGTATCTAGAACTA 57.211 33.333 0.00 0.00 0.00 2.24
4272 5328 8.569641 GTCGTAGAAATGGATGTATCTAGAACT 58.430 37.037 0.00 0.00 39.69 3.01
4273 5329 7.534578 CGTCGTAGAAATGGATGTATCTAGAAC 59.465 40.741 0.00 0.00 39.69 3.01
4274 5330 7.443272 TCGTCGTAGAAATGGATGTATCTAGAA 59.557 37.037 0.00 0.00 39.69 2.10
4275 5331 6.932960 TCGTCGTAGAAATGGATGTATCTAGA 59.067 38.462 0.00 0.00 39.69 2.43
4276 5332 7.095144 ACTCGTCGTAGAAATGGATGTATCTAG 60.095 40.741 0.00 0.00 39.69 2.43
4277 5333 6.709397 ACTCGTCGTAGAAATGGATGTATCTA 59.291 38.462 0.00 0.00 39.69 1.98
4278 5334 5.531659 ACTCGTCGTAGAAATGGATGTATCT 59.468 40.000 0.00 0.00 39.69 1.98
4279 5335 5.759963 ACTCGTCGTAGAAATGGATGTATC 58.240 41.667 0.00 0.00 39.69 2.24
4280 5336 5.769484 ACTCGTCGTAGAAATGGATGTAT 57.231 39.130 0.00 0.00 39.69 2.29
4281 5337 6.682423 TTACTCGTCGTAGAAATGGATGTA 57.318 37.500 0.00 0.00 39.69 2.29
4282 5338 5.571784 TTACTCGTCGTAGAAATGGATGT 57.428 39.130 0.00 0.00 39.69 3.06
4283 5339 7.337718 CAAATTACTCGTCGTAGAAATGGATG 58.662 38.462 0.00 0.00 39.69 3.51
4284 5340 6.479001 CCAAATTACTCGTCGTAGAAATGGAT 59.521 38.462 0.00 0.00 39.69 3.41
4285 5341 5.808540 CCAAATTACTCGTCGTAGAAATGGA 59.191 40.000 0.00 0.00 39.69 3.41
4286 5342 5.808540 TCCAAATTACTCGTCGTAGAAATGG 59.191 40.000 0.00 0.00 39.69 3.16
4287 5343 6.880822 TCCAAATTACTCGTCGTAGAAATG 57.119 37.500 0.00 0.00 39.69 2.32
4288 5344 6.034256 CGTTCCAAATTACTCGTCGTAGAAAT 59.966 38.462 0.00 0.00 39.69 2.17
4289 5345 5.343058 CGTTCCAAATTACTCGTCGTAGAAA 59.657 40.000 0.00 0.00 39.69 2.52
4290 5346 4.853196 CGTTCCAAATTACTCGTCGTAGAA 59.147 41.667 0.00 0.00 39.69 2.10
4291 5347 4.406069 CGTTCCAAATTACTCGTCGTAGA 58.594 43.478 0.00 0.00 0.00 2.59
4292 5348 3.545078 CCGTTCCAAATTACTCGTCGTAG 59.455 47.826 0.00 0.00 0.00 3.51
4293 5349 3.190327 TCCGTTCCAAATTACTCGTCGTA 59.810 43.478 0.00 0.00 0.00 3.43
4294 5350 2.030007 TCCGTTCCAAATTACTCGTCGT 60.030 45.455 0.00 0.00 0.00 4.34
4295 5351 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
4296 5352 3.582780 ACTCCGTTCCAAATTACTCGTC 58.417 45.455 0.00 0.00 0.00 4.20
4297 5353 3.672767 ACTCCGTTCCAAATTACTCGT 57.327 42.857 0.00 0.00 0.00 4.18
4298 5354 6.976925 ACTAATACTCCGTTCCAAATTACTCG 59.023 38.462 0.00 0.00 0.00 4.18
4299 5355 8.601476 CAACTAATACTCCGTTCCAAATTACTC 58.399 37.037 0.00 0.00 0.00 2.59
4300 5356 7.551617 CCAACTAATACTCCGTTCCAAATTACT 59.448 37.037 0.00 0.00 0.00 2.24
4301 5357 7.201670 CCCAACTAATACTCCGTTCCAAATTAC 60.202 40.741 0.00 0.00 0.00 1.89
4302 5358 6.824704 CCCAACTAATACTCCGTTCCAAATTA 59.175 38.462 0.00 0.00 0.00 1.40
4303 5359 5.650703 CCCAACTAATACTCCGTTCCAAATT 59.349 40.000 0.00 0.00 0.00 1.82
4304 5360 5.190677 CCCAACTAATACTCCGTTCCAAAT 58.809 41.667 0.00 0.00 0.00 2.32
4305 5361 4.566070 CCCCAACTAATACTCCGTTCCAAA 60.566 45.833 0.00 0.00 0.00 3.28
4306 5362 3.054948 CCCCAACTAATACTCCGTTCCAA 60.055 47.826 0.00 0.00 0.00 3.53
4307 5363 2.502538 CCCCAACTAATACTCCGTTCCA 59.497 50.000 0.00 0.00 0.00 3.53
4308 5364 2.502947 ACCCCAACTAATACTCCGTTCC 59.497 50.000 0.00 0.00 0.00 3.62
4309 5365 3.431346 GGACCCCAACTAATACTCCGTTC 60.431 52.174 0.00 0.00 0.00 3.95
4310 5366 2.502947 GGACCCCAACTAATACTCCGTT 59.497 50.000 0.00 0.00 0.00 4.44
4311 5367 2.113807 GGACCCCAACTAATACTCCGT 58.886 52.381 0.00 0.00 0.00 4.69
4312 5368 2.112998 TGGACCCCAACTAATACTCCG 58.887 52.381 0.00 0.00 0.00 4.63
4313 5369 5.785940 AGATATGGACCCCAACTAATACTCC 59.214 44.000 0.00 0.00 36.95 3.85
4314 5370 6.936968 AGATATGGACCCCAACTAATACTC 57.063 41.667 0.00 0.00 36.95 2.59
4315 5371 7.038231 GCTAAGATATGGACCCCAACTAATACT 60.038 40.741 0.00 0.00 36.95 2.12
4316 5372 7.104290 GCTAAGATATGGACCCCAACTAATAC 58.896 42.308 0.00 0.00 36.95 1.89
4317 5373 6.214819 GGCTAAGATATGGACCCCAACTAATA 59.785 42.308 0.00 0.00 36.95 0.98
4318 5374 5.014228 GGCTAAGATATGGACCCCAACTAAT 59.986 44.000 0.00 0.00 36.95 1.73
4366 5440 8.729756 TGATTAAACATAAGACATGGACAACAG 58.270 33.333 0.00 0.00 0.00 3.16
4382 5456 5.222130 ACCTCCAGTCAACCTGATTAAACAT 60.222 40.000 0.00 0.00 44.49 2.71
4399 5473 3.305608 GGAATGCAAAACAGAACCTCCAG 60.306 47.826 0.00 0.00 0.00 3.86
4457 5535 5.691754 CCATGAACTGTTTTGAAACTAAGCC 59.308 40.000 7.97 0.00 39.59 4.35
4471 5549 1.214175 TCCACAACACCCATGAACTGT 59.786 47.619 0.00 0.00 0.00 3.55
4511 5589 5.433526 TCGTGCCCATTATAAAACTTAGCT 58.566 37.500 0.00 0.00 0.00 3.32
4529 5607 4.398247 GTCTTCACAATCAGATTTCGTGC 58.602 43.478 8.23 0.00 0.00 5.34
4533 5611 6.581171 AAAGGGTCTTCACAATCAGATTTC 57.419 37.500 0.00 0.00 0.00 2.17
4578 5660 6.825721 CCTATCCAATGGAAGGTGCTTATATC 59.174 42.308 5.89 0.00 34.34 1.63
4618 5821 6.154877 TGCATAAATTCCATCAATTGTGTCCT 59.845 34.615 5.13 0.00 34.69 3.85
4685 5888 2.751436 CAACCCCCGGTGCTGATG 60.751 66.667 0.00 0.00 35.34 3.07
4694 5906 2.606519 TCACTCTCCCAACCCCCG 60.607 66.667 0.00 0.00 0.00 5.73
4709 5921 0.904865 AGCGGGTGATCTTGGAGTCA 60.905 55.000 0.00 0.00 0.00 3.41
4735 5952 4.452825 TCCATCTACGACCTCTCTAACAG 58.547 47.826 0.00 0.00 0.00 3.16
4736 5953 4.498894 TCCATCTACGACCTCTCTAACA 57.501 45.455 0.00 0.00 0.00 2.41
4737 5954 4.260702 CGTTCCATCTACGACCTCTCTAAC 60.261 50.000 0.00 0.00 41.33 2.34
4738 5955 3.875727 CGTTCCATCTACGACCTCTCTAA 59.124 47.826 0.00 0.00 41.33 2.10
4739 5956 3.133542 TCGTTCCATCTACGACCTCTCTA 59.866 47.826 0.00 0.00 42.51 2.43
4747 5964 3.210232 AGATCCTCGTTCCATCTACGA 57.790 47.619 0.00 0.00 44.88 3.43
4769 5986 1.131638 AAGCTTCAGTCAGTGGGTCA 58.868 50.000 0.00 0.00 0.00 4.02
4776 5993 6.596888 TCCAGAATTTCATAAGCTTCAGTCAG 59.403 38.462 0.00 0.00 0.00 3.51
4777 5994 6.475504 TCCAGAATTTCATAAGCTTCAGTCA 58.524 36.000 0.00 0.00 0.00 3.41
4812 6038 2.343101 TGGCCATCTTAACGACTTTCG 58.657 47.619 0.00 0.00 46.93 3.46
4813 6039 5.107453 CGATATGGCCATCTTAACGACTTTC 60.107 44.000 24.80 0.00 0.00 2.62
4817 6095 2.993899 CCGATATGGCCATCTTAACGAC 59.006 50.000 24.80 5.06 0.00 4.34
4821 6099 3.146066 GCAACCGATATGGCCATCTTAA 58.854 45.455 24.80 4.57 43.94 1.85
4828 6106 2.555547 GGCAGCAACCGATATGGCC 61.556 63.158 0.00 0.00 43.94 5.36
4830 6108 0.179048 TCAGGCAGCAACCGATATGG 60.179 55.000 0.00 0.00 46.41 2.74
4832 6110 1.417517 TCATCAGGCAGCAACCGATAT 59.582 47.619 0.00 0.00 33.69 1.63
4845 6123 1.129998 CAACTGCGCTTTCTCATCAGG 59.870 52.381 9.73 0.00 0.00 3.86
4895 6173 3.316308 GGACCACAATGGCATAGATTGAC 59.684 47.826 0.00 0.00 42.67 3.18
4925 6203 5.163733 CCTTGCAGAAAGTGTTTTTGCAAAT 60.164 36.000 22.84 0.00 42.54 2.32
4966 6247 3.067684 ACCTTGATAAAACCAGGACGG 57.932 47.619 0.00 0.00 42.50 4.79
4993 6278 1.136305 GTTGACTAGTAGGCCGCATCA 59.864 52.381 0.00 0.00 0.00 3.07
5007 6292 0.765510 GAACTCCCCACCTGTTGACT 59.234 55.000 0.00 0.00 0.00 3.41
5008 6293 0.765510 AGAACTCCCCACCTGTTGAC 59.234 55.000 0.00 0.00 0.00 3.18
5009 6294 1.518367 AAGAACTCCCCACCTGTTGA 58.482 50.000 0.00 0.00 0.00 3.18
5010 6295 2.158608 AGAAAGAACTCCCCACCTGTTG 60.159 50.000 0.00 0.00 0.00 3.33
5011 6296 2.136026 AGAAAGAACTCCCCACCTGTT 58.864 47.619 0.00 0.00 0.00 3.16
5012 6297 1.821088 AGAAAGAACTCCCCACCTGT 58.179 50.000 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.