Multiple sequence alignment - TraesCS1A01G222700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G222700 chr1A 100.000 4831 0 0 1 4831 392523060 392527890 0.000000e+00 8922.0
1 TraesCS1A01G222700 chr1A 88.235 493 58 0 4339 4831 47824337 47824829 1.500000e-164 590.0
2 TraesCS1A01G222700 chr1A 82.213 461 75 3 4347 4807 47210086 47210539 1.630000e-104 390.0
3 TraesCS1A01G222700 chr1A 86.312 263 34 2 243 504 359400321 359400060 7.910000e-73 285.0
4 TraesCS1A01G222700 chr1A 95.122 123 6 0 1 123 316894757 316894635 1.370000e-45 195.0
5 TraesCS1A01G222700 chr1A 94.915 59 3 0 508 566 497487020 497486962 5.150000e-15 93.5
6 TraesCS1A01G222700 chr1D 91.574 3157 154 53 623 3709 312967368 312970482 0.000000e+00 4253.0
7 TraesCS1A01G222700 chr1D 96.875 1056 25 2 3778 4831 312970507 312971556 0.000000e+00 1760.0
8 TraesCS1A01G222700 chr1D 84.686 764 100 11 4070 4831 48021564 48022312 0.000000e+00 747.0
9 TraesCS1A01G222700 chr1D 78.812 741 115 20 4077 4807 47327902 47328610 1.230000e-125 460.0
10 TraesCS1A01G222700 chr1D 100.000 29 0 0 597 625 312967316 312967344 2.000000e-03 54.7
11 TraesCS1A01G222700 chr1B 91.508 2944 156 47 647 3555 423203758 423206642 0.000000e+00 3965.0
12 TraesCS1A01G222700 chr1B 96.182 1074 31 3 3759 4831 423206941 423208005 0.000000e+00 1748.0
13 TraesCS1A01G222700 chr1B 94.375 160 9 0 1 160 269304555 269304714 3.730000e-61 246.0
14 TraesCS1A01G222700 chr2D 92.000 250 19 1 255 504 638389314 638389562 2.770000e-92 350.0
15 TraesCS1A01G222700 chr2D 88.931 262 29 0 243 504 76002990 76002729 1.680000e-84 324.0
16 TraesCS1A01G222700 chr2D 91.045 67 4 2 511 575 574977680 574977614 6.660000e-14 89.8
17 TraesCS1A01G222700 chr2A 88.213 263 29 2 243 504 75921953 75921692 3.630000e-81 313.0
18 TraesCS1A01G222700 chr5D 87.786 262 31 1 243 504 434422629 434422889 6.070000e-79 305.0
19 TraesCS1A01G222700 chr5D 92.647 68 4 1 507 573 69431791 69431858 3.980000e-16 97.1
20 TraesCS1A01G222700 chr5D 93.750 64 4 0 506 569 386689215 386689278 3.980000e-16 97.1
21 TraesCS1A01G222700 chr5A 87.405 262 32 1 243 504 451882188 451881928 2.830000e-77 300.0
22 TraesCS1A01G222700 chr5A 85.551 263 34 3 243 504 687053213 687053472 6.160000e-69 272.0
23 TraesCS1A01G222700 chr5A 84.733 262 36 4 243 504 391962113 391962370 4.800000e-65 259.0
24 TraesCS1A01G222700 chr5A 94.286 70 4 0 507 576 13093181 13093250 1.840000e-19 108.0
25 TraesCS1A01G222700 chr6D 84.420 276 41 2 243 517 469275448 469275722 2.220000e-68 270.0
26 TraesCS1A01G222700 chr6A 95.000 160 8 0 1 160 129346786 129346627 8.030000e-63 252.0
27 TraesCS1A01G222700 chr7A 93.125 160 11 0 1 160 30218979 30219138 8.080000e-58 235.0
28 TraesCS1A01G222700 chr4D 82.734 139 24 0 3396 3534 336841579 336841717 1.830000e-24 124.0
29 TraesCS1A01G222700 chr4D 77.778 162 32 4 2944 3103 336841151 336841310 3.980000e-16 97.1
30 TraesCS1A01G222700 chr4B 82.014 139 25 0 3396 3534 415122328 415122466 8.490000e-23 119.0
31 TraesCS1A01G222700 chr4B 77.778 162 32 4 2944 3103 415121903 415122062 3.980000e-16 97.1
32 TraesCS1A01G222700 chr4B 95.000 60 3 0 511 570 619938405 619938346 1.430000e-15 95.3
33 TraesCS1A01G222700 chr3D 73.900 341 67 15 4431 4766 432136445 432136122 3.050000e-22 117.0
34 TraesCS1A01G222700 chr3B 76.777 211 41 6 4431 4637 564320449 564320243 1.420000e-20 111.0
35 TraesCS1A01G222700 chr3B 88.506 87 7 3 505 590 23927097 23927013 8.550000e-18 102.0
36 TraesCS1A01G222700 chr3B 88.000 75 8 1 503 576 263796029 263796103 2.400000e-13 87.9
37 TraesCS1A01G222700 chr4A 78.395 162 31 4 2944 3103 136617410 136617251 8.550000e-18 102.0
38 TraesCS1A01G222700 chr2B 87.838 74 8 1 506 579 800200765 800200693 8.610000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G222700 chr1A 392523060 392527890 4830 False 8922.000000 8922 100.000000 1 4831 1 chr1A.!!$F3 4830
1 TraesCS1A01G222700 chr1D 312967316 312971556 4240 False 2022.566667 4253 96.149667 597 4831 3 chr1D.!!$F3 4234
2 TraesCS1A01G222700 chr1D 48021564 48022312 748 False 747.000000 747 84.686000 4070 4831 1 chr1D.!!$F2 761
3 TraesCS1A01G222700 chr1D 47327902 47328610 708 False 460.000000 460 78.812000 4077 4807 1 chr1D.!!$F1 730
4 TraesCS1A01G222700 chr1B 423203758 423208005 4247 False 2856.500000 3965 93.845000 647 4831 2 chr1B.!!$F2 4184

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
28 29 0.095417 GCGGTGATCTTTCGTTGCTC 59.905 55.0 0.00 0.00 0.00 4.26 F
1183 1221 0.031314 ATGCTCAGCGAGGTATGTCG 59.969 55.0 0.00 0.00 43.08 4.35 F
1204 1242 0.033920 TGTGTGTACCTCTGCTGCAG 59.966 55.0 23.31 23.31 0.00 4.41 F
1679 1733 0.460284 TTCTTCGCGGCCATCTTCTC 60.460 55.0 6.13 0.00 0.00 2.87 F
2846 2910 0.676782 AGTATGCTCCAAACGGCACC 60.677 55.0 0.00 0.00 41.39 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1665 1719 0.531532 AATCTGAGAAGATGGCCGCG 60.532 55.000 0.00 0.0 0.0 6.46 R
3111 3181 0.241213 CGTCCGAGCAGAAGAAGACA 59.759 55.000 0.00 0.0 0.0 3.41 R
3201 3277 0.108377 CCATGCCGTAGCTGTACACA 60.108 55.000 0.00 0.0 40.8 3.72 R
3324 3400 2.593978 CTCAGGCCAGGGTCCATG 59.406 66.667 5.01 0.0 0.0 3.66 R
3994 4198 0.108424 TTTTGTTGCTGCGCCAAACT 60.108 45.000 4.18 0.0 0.0 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.510664 GAGGAGAAGGCGGTGATCT 58.489 57.895 0.00 0.00 0.00 2.75
19 20 0.827368 GAGGAGAAGGCGGTGATCTT 59.173 55.000 0.00 0.00 0.00 2.40
20 21 1.208293 GAGGAGAAGGCGGTGATCTTT 59.792 52.381 0.00 0.00 0.00 2.52
21 22 1.208293 AGGAGAAGGCGGTGATCTTTC 59.792 52.381 0.00 0.00 0.00 2.62
22 23 1.281899 GAGAAGGCGGTGATCTTTCG 58.718 55.000 0.00 0.00 0.00 3.46
23 24 0.608640 AGAAGGCGGTGATCTTTCGT 59.391 50.000 0.00 0.00 0.00 3.85
24 25 1.002087 AGAAGGCGGTGATCTTTCGTT 59.998 47.619 0.00 0.00 0.00 3.85
25 26 1.128692 GAAGGCGGTGATCTTTCGTTG 59.871 52.381 0.00 0.00 0.00 4.10
26 27 1.134694 GGCGGTGATCTTTCGTTGC 59.865 57.895 0.00 0.00 0.00 4.17
27 28 1.298859 GGCGGTGATCTTTCGTTGCT 61.299 55.000 0.00 0.00 0.00 3.91
28 29 0.095417 GCGGTGATCTTTCGTTGCTC 59.905 55.000 0.00 0.00 0.00 4.26
29 30 0.721718 CGGTGATCTTTCGTTGCTCC 59.278 55.000 0.00 0.00 0.00 4.70
30 31 1.087501 GGTGATCTTTCGTTGCTCCC 58.912 55.000 0.00 0.00 0.00 4.30
31 32 1.610624 GGTGATCTTTCGTTGCTCCCA 60.611 52.381 0.00 0.00 0.00 4.37
32 33 1.734465 GTGATCTTTCGTTGCTCCCAG 59.266 52.381 0.00 0.00 0.00 4.45
33 34 1.623311 TGATCTTTCGTTGCTCCCAGA 59.377 47.619 0.00 0.00 0.00 3.86
34 35 2.275318 GATCTTTCGTTGCTCCCAGAG 58.725 52.381 0.00 0.00 0.00 3.35
43 44 2.583520 CTCCCAGAGCCAGCTGAC 59.416 66.667 17.39 2.52 38.14 3.51
44 45 3.368190 CTCCCAGAGCCAGCTGACG 62.368 68.421 17.39 0.00 38.14 4.35
45 46 3.385384 CCCAGAGCCAGCTGACGA 61.385 66.667 17.39 0.00 38.14 4.20
46 47 2.659016 CCAGAGCCAGCTGACGAA 59.341 61.111 17.39 0.00 38.14 3.85
47 48 1.447489 CCAGAGCCAGCTGACGAAG 60.447 63.158 17.39 0.00 38.14 3.79
48 49 1.447489 CAGAGCCAGCTGACGAAGG 60.447 63.158 17.39 0.00 38.14 3.46
49 50 1.910772 AGAGCCAGCTGACGAAGGT 60.911 57.895 17.39 2.81 36.97 3.50
50 51 1.446966 GAGCCAGCTGACGAAGGTC 60.447 63.158 17.39 9.35 43.71 3.85
51 52 1.882989 GAGCCAGCTGACGAAGGTCT 61.883 60.000 17.39 0.00 43.79 3.85
52 53 1.446966 GCCAGCTGACGAAGGTCTC 60.447 63.158 17.39 0.00 43.79 3.36
53 54 1.967535 CCAGCTGACGAAGGTCTCA 59.032 57.895 17.39 0.00 43.79 3.27
54 55 0.108898 CCAGCTGACGAAGGTCTCAG 60.109 60.000 17.39 0.00 43.79 3.35
57 58 3.712020 CTGACGAAGGTCTCAGCTC 57.288 57.895 0.00 0.00 43.79 4.09
58 59 0.179176 CTGACGAAGGTCTCAGCTCG 60.179 60.000 0.00 0.00 43.79 5.03
59 60 0.605589 TGACGAAGGTCTCAGCTCGA 60.606 55.000 0.00 0.00 43.79 4.04
60 61 0.736053 GACGAAGGTCTCAGCTCGAT 59.264 55.000 0.00 0.00 40.15 3.59
61 62 0.453793 ACGAAGGTCTCAGCTCGATG 59.546 55.000 0.00 0.00 0.00 3.84
62 63 0.735471 CGAAGGTCTCAGCTCGATGA 59.265 55.000 0.00 0.00 0.00 2.92
63 64 1.336440 CGAAGGTCTCAGCTCGATGAT 59.664 52.381 0.00 0.00 0.00 2.45
64 65 2.741612 GAAGGTCTCAGCTCGATGATG 58.258 52.381 0.00 0.00 0.00 3.07
65 66 1.774110 AGGTCTCAGCTCGATGATGT 58.226 50.000 0.00 0.00 33.14 3.06
66 67 1.680735 AGGTCTCAGCTCGATGATGTC 59.319 52.381 0.00 0.00 33.14 3.06
67 68 1.680735 GGTCTCAGCTCGATGATGTCT 59.319 52.381 0.00 0.00 33.14 3.41
68 69 2.287547 GGTCTCAGCTCGATGATGTCTC 60.288 54.545 0.00 0.00 33.14 3.36
69 70 2.357323 GTCTCAGCTCGATGATGTCTCA 59.643 50.000 0.00 0.00 35.41 3.27
70 71 2.617774 TCTCAGCTCGATGATGTCTCAG 59.382 50.000 0.00 0.00 34.12 3.35
71 72 2.358582 CTCAGCTCGATGATGTCTCAGT 59.641 50.000 0.00 0.00 34.12 3.41
72 73 2.098770 TCAGCTCGATGATGTCTCAGTG 59.901 50.000 0.00 0.00 34.12 3.66
73 74 2.098770 CAGCTCGATGATGTCTCAGTGA 59.901 50.000 0.00 0.00 34.12 3.41
74 75 2.358582 AGCTCGATGATGTCTCAGTGAG 59.641 50.000 14.36 14.36 38.59 3.51
75 76 2.098934 GCTCGATGATGTCTCAGTGAGT 59.901 50.000 19.53 0.31 38.18 3.41
76 77 3.313803 GCTCGATGATGTCTCAGTGAGTA 59.686 47.826 19.53 10.67 38.18 2.59
77 78 4.554526 GCTCGATGATGTCTCAGTGAGTAG 60.555 50.000 19.53 0.38 38.18 2.57
78 79 4.518249 TCGATGATGTCTCAGTGAGTAGT 58.482 43.478 19.53 6.81 34.12 2.73
79 80 4.333926 TCGATGATGTCTCAGTGAGTAGTG 59.666 45.833 19.53 3.89 34.12 2.74
80 81 3.857549 TGATGTCTCAGTGAGTAGTGC 57.142 47.619 19.53 7.70 0.00 4.40
81 82 2.162408 TGATGTCTCAGTGAGTAGTGCG 59.838 50.000 19.53 0.00 0.00 5.34
82 83 0.241213 TGTCTCAGTGAGTAGTGCGC 59.759 55.000 19.53 0.00 0.00 6.09
83 84 0.794981 GTCTCAGTGAGTAGTGCGCG 60.795 60.000 19.53 0.00 0.00 6.86
84 85 1.515088 CTCAGTGAGTAGTGCGCGG 60.515 63.158 12.28 0.00 0.00 6.46
85 86 1.923227 CTCAGTGAGTAGTGCGCGGA 61.923 60.000 12.28 0.00 0.00 5.54
86 87 1.515088 CAGTGAGTAGTGCGCGGAG 60.515 63.158 8.83 0.00 0.00 4.63
87 88 1.674651 AGTGAGTAGTGCGCGGAGA 60.675 57.895 8.83 0.00 0.00 3.71
88 89 1.211969 GTGAGTAGTGCGCGGAGAA 59.788 57.895 8.83 0.00 0.00 2.87
89 90 0.798771 GTGAGTAGTGCGCGGAGAAG 60.799 60.000 8.83 0.00 0.00 2.85
90 91 1.226717 GAGTAGTGCGCGGAGAAGG 60.227 63.158 8.83 0.00 0.00 3.46
91 92 2.886124 GTAGTGCGCGGAGAAGGC 60.886 66.667 8.83 0.00 0.00 4.35
92 93 3.378602 TAGTGCGCGGAGAAGGCA 61.379 61.111 8.83 0.00 0.00 4.75
93 94 3.356639 TAGTGCGCGGAGAAGGCAG 62.357 63.158 8.83 0.00 37.36 4.85
99 100 4.069232 CGGAGAAGGCAGCGGTGA 62.069 66.667 20.69 0.00 0.00 4.02
100 101 2.435059 GGAGAAGGCAGCGGTGAC 60.435 66.667 20.69 17.47 0.00 3.67
101 102 2.435059 GAGAAGGCAGCGGTGACC 60.435 66.667 18.67 17.62 27.74 4.02
112 113 2.257676 GGTGACCGACCACGAGTC 59.742 66.667 0.00 0.00 45.34 3.36
113 114 2.266627 GGTGACCGACCACGAGTCT 61.267 63.158 8.34 0.00 45.34 3.24
114 115 1.209640 GTGACCGACCACGAGTCTC 59.790 63.158 8.34 0.00 43.91 3.36
115 116 1.228033 TGACCGACCACGAGTCTCA 60.228 57.895 0.00 4.25 43.91 3.27
116 117 0.820482 TGACCGACCACGAGTCTCAA 60.820 55.000 0.00 0.00 43.91 3.02
117 118 0.526662 GACCGACCACGAGTCTCAAT 59.473 55.000 0.00 0.00 43.91 2.57
118 119 0.243907 ACCGACCACGAGTCTCAATG 59.756 55.000 0.00 0.00 43.91 2.82
119 120 0.243907 CCGACCACGAGTCTCAATGT 59.756 55.000 0.00 0.00 43.91 2.71
120 121 1.336887 CCGACCACGAGTCTCAATGTT 60.337 52.381 0.00 0.00 43.91 2.71
121 122 1.721389 CGACCACGAGTCTCAATGTTG 59.279 52.381 0.00 0.00 43.91 3.33
122 123 2.755650 GACCACGAGTCTCAATGTTGT 58.244 47.619 0.00 0.00 42.69 3.32
123 124 2.476619 GACCACGAGTCTCAATGTTGTG 59.523 50.000 0.00 0.00 42.69 3.33
124 125 1.195448 CCACGAGTCTCAATGTTGTGC 59.805 52.381 0.00 0.00 0.00 4.57
125 126 1.136529 CACGAGTCTCAATGTTGTGCG 60.137 52.381 0.00 0.00 0.00 5.34
126 127 0.439985 CGAGTCTCAATGTTGTGCGG 59.560 55.000 0.00 0.00 0.00 5.69
127 128 0.798776 GAGTCTCAATGTTGTGCGGG 59.201 55.000 0.00 0.00 0.00 6.13
128 129 1.210155 GTCTCAATGTTGTGCGGGC 59.790 57.895 0.00 0.00 0.00 6.13
129 130 1.073025 TCTCAATGTTGTGCGGGCT 59.927 52.632 0.00 0.00 0.00 5.19
130 131 1.210931 CTCAATGTTGTGCGGGCTG 59.789 57.895 0.00 0.00 0.00 4.85
131 132 2.203972 CTCAATGTTGTGCGGGCTGG 62.204 60.000 0.00 0.00 0.00 4.85
132 133 2.203480 AATGTTGTGCGGGCTGGT 60.203 55.556 0.00 0.00 0.00 4.00
133 134 1.074072 AATGTTGTGCGGGCTGGTA 59.926 52.632 0.00 0.00 0.00 3.25
134 135 1.241315 AATGTTGTGCGGGCTGGTAC 61.241 55.000 0.00 0.00 0.00 3.34
135 136 2.032071 GTTGTGCGGGCTGGTACT 59.968 61.111 0.00 0.00 0.00 2.73
136 137 2.031919 TTGTGCGGGCTGGTACTG 59.968 61.111 0.00 0.00 0.00 2.74
148 149 2.069273 CTGGTACTGCTGTTTCTTCGG 58.931 52.381 0.09 0.00 0.00 4.30
149 150 0.796927 GGTACTGCTGTTTCTTCGGC 59.203 55.000 0.09 0.00 39.84 5.54
150 151 0.438830 GTACTGCTGTTTCTTCGGCG 59.561 55.000 0.00 0.00 42.03 6.46
151 152 1.289109 TACTGCTGTTTCTTCGGCGC 61.289 55.000 0.00 0.00 42.03 6.53
152 153 2.590291 TGCTGTTTCTTCGGCGCA 60.590 55.556 10.83 0.00 42.03 6.09
153 154 2.127232 GCTGTTTCTTCGGCGCAC 60.127 61.111 10.83 0.00 0.00 5.34
154 155 2.170985 CTGTTTCTTCGGCGCACG 59.829 61.111 10.83 11.16 46.11 5.34
155 156 3.911155 CTGTTTCTTCGGCGCACGC 62.911 63.158 10.83 6.46 43.86 5.34
156 157 3.712881 GTTTCTTCGGCGCACGCT 61.713 61.111 15.36 0.00 43.86 5.07
157 158 3.411351 TTTCTTCGGCGCACGCTC 61.411 61.111 15.36 4.30 43.86 5.03
160 161 4.492160 CTTCGGCGCACGCTCCTA 62.492 66.667 15.36 0.00 43.86 2.94
161 162 3.774959 CTTCGGCGCACGCTCCTAT 62.775 63.158 15.36 0.00 43.86 2.57
162 163 4.569023 TCGGCGCACGCTCCTATG 62.569 66.667 15.36 0.00 43.86 2.23
163 164 4.873129 CGGCGCACGCTCCTATGT 62.873 66.667 15.36 0.00 41.60 2.29
164 165 2.962253 GGCGCACGCTCCTATGTC 60.962 66.667 15.36 0.00 41.60 3.06
165 166 2.105128 GCGCACGCTCCTATGTCT 59.895 61.111 7.96 0.00 38.26 3.41
166 167 1.946650 GCGCACGCTCCTATGTCTC 60.947 63.158 7.96 0.00 38.26 3.36
167 168 1.433471 CGCACGCTCCTATGTCTCA 59.567 57.895 0.00 0.00 0.00 3.27
168 169 0.593518 CGCACGCTCCTATGTCTCAG 60.594 60.000 0.00 0.00 0.00 3.35
169 170 0.457851 GCACGCTCCTATGTCTCAGT 59.542 55.000 0.00 0.00 0.00 3.41
170 171 1.535015 GCACGCTCCTATGTCTCAGTC 60.535 57.143 0.00 0.00 0.00 3.51
171 172 1.018148 ACGCTCCTATGTCTCAGTCG 58.982 55.000 0.00 0.00 0.00 4.18
172 173 1.300481 CGCTCCTATGTCTCAGTCGA 58.700 55.000 0.00 0.00 0.00 4.20
173 174 1.876799 CGCTCCTATGTCTCAGTCGAT 59.123 52.381 0.00 0.00 0.00 3.59
174 175 3.067833 CGCTCCTATGTCTCAGTCGATA 58.932 50.000 0.00 0.00 0.00 2.92
175 176 3.120477 CGCTCCTATGTCTCAGTCGATAC 60.120 52.174 0.00 0.00 0.00 2.24
176 177 4.069304 GCTCCTATGTCTCAGTCGATACT 58.931 47.826 0.00 0.00 35.91 2.12
177 178 5.239351 GCTCCTATGTCTCAGTCGATACTA 58.761 45.833 0.00 0.00 33.48 1.82
178 179 5.878116 GCTCCTATGTCTCAGTCGATACTAT 59.122 44.000 0.00 0.00 33.48 2.12
179 180 7.042950 GCTCCTATGTCTCAGTCGATACTATA 58.957 42.308 0.00 0.00 33.48 1.31
180 181 7.223971 GCTCCTATGTCTCAGTCGATACTATAG 59.776 44.444 0.00 0.00 33.48 1.31
181 182 8.136563 TCCTATGTCTCAGTCGATACTATAGT 57.863 38.462 10.87 10.87 33.48 2.12
182 183 8.252417 TCCTATGTCTCAGTCGATACTATAGTC 58.748 40.741 9.12 0.00 33.48 2.59
183 184 8.255206 CCTATGTCTCAGTCGATACTATAGTCT 58.745 40.741 9.12 0.00 33.48 3.24
184 185 9.647797 CTATGTCTCAGTCGATACTATAGTCTT 57.352 37.037 9.12 0.00 33.48 3.01
185 186 8.911918 ATGTCTCAGTCGATACTATAGTCTTT 57.088 34.615 9.12 0.00 33.48 2.52
186 187 8.734218 TGTCTCAGTCGATACTATAGTCTTTT 57.266 34.615 9.12 0.00 33.48 2.27
187 188 9.828039 TGTCTCAGTCGATACTATAGTCTTTTA 57.172 33.333 9.12 0.00 33.48 1.52
205 206 8.388103 AGTCTTTTAATTTCGTATGGACATTCG 58.612 33.333 5.16 5.16 33.71 3.34
206 207 8.173130 GTCTTTTAATTTCGTATGGACATTCGT 58.827 33.333 10.35 0.00 34.04 3.85
207 208 8.172484 TCTTTTAATTTCGTATGGACATTCGTG 58.828 33.333 10.35 0.00 34.04 4.35
208 209 3.944422 ATTTCGTATGGACATTCGTGC 57.056 42.857 10.35 0.00 34.04 5.34
257 258 5.906772 TTTTTCTTACTCCCTCCAGTCTT 57.093 39.130 0.00 0.00 0.00 3.01
258 259 5.906772 TTTTCTTACTCCCTCCAGTCTTT 57.093 39.130 0.00 0.00 0.00 2.52
259 260 5.906772 TTTCTTACTCCCTCCAGTCTTTT 57.093 39.130 0.00 0.00 0.00 2.27
260 261 5.906772 TTCTTACTCCCTCCAGTCTTTTT 57.093 39.130 0.00 0.00 0.00 1.94
303 304 6.793492 GACTCAAGTCAAAGCATCTTTACT 57.207 37.500 5.28 0.00 44.18 2.24
304 305 7.195839 GACTCAAGTCAAAGCATCTTTACTT 57.804 36.000 5.28 0.00 44.18 2.24
305 306 7.573968 ACTCAAGTCAAAGCATCTTTACTTT 57.426 32.000 0.00 0.00 36.56 2.66
314 315 6.715347 AAGCATCTTTACTTTGACCAAACT 57.285 33.333 0.00 0.00 0.00 2.66
315 316 6.715347 AGCATCTTTACTTTGACCAAACTT 57.285 33.333 0.00 0.00 0.00 2.66
316 317 7.817418 AGCATCTTTACTTTGACCAAACTTA 57.183 32.000 0.00 0.00 0.00 2.24
317 318 8.409358 AGCATCTTTACTTTGACCAAACTTAT 57.591 30.769 0.00 0.00 0.00 1.73
318 319 8.860088 AGCATCTTTACTTTGACCAAACTTATT 58.140 29.630 0.00 0.00 0.00 1.40
319 320 9.476202 GCATCTTTACTTTGACCAAACTTATTT 57.524 29.630 0.00 0.00 0.00 1.40
347 348 9.829507 AAAAAGGATCAACATTTACAATGTCAA 57.170 25.926 2.65 0.00 32.10 3.18
348 349 9.829507 AAAAGGATCAACATTTACAATGTCAAA 57.170 25.926 2.65 0.00 32.10 2.69
350 351 9.643693 AAGGATCAACATTTACAATGTCAAATC 57.356 29.630 2.65 6.48 0.00 2.17
351 352 8.805175 AGGATCAACATTTACAATGTCAAATCA 58.195 29.630 2.65 0.00 0.00 2.57
352 353 9.421806 GGATCAACATTTACAATGTCAAATCAA 57.578 29.630 2.65 0.00 0.00 2.57
354 355 9.761504 ATCAACATTTACAATGTCAAATCAACA 57.238 25.926 2.65 0.00 0.00 3.33
355 356 9.761504 TCAACATTTACAATGTCAAATCAACAT 57.238 25.926 2.65 0.00 38.98 2.71
377 378 9.871238 AACATAGTTAGATTCATTACGAACTGT 57.129 29.630 0.00 0.00 36.12 3.55
382 383 9.924650 AGTTAGATTCATTACGAACTGTAGTTT 57.075 29.630 0.00 0.00 38.56 2.66
384 385 9.917129 TTAGATTCATTACGAACTGTAGTTTCA 57.083 29.630 0.00 0.00 38.56 2.69
386 387 8.873830 AGATTCATTACGAACTGTAGTTTCATG 58.126 33.333 0.00 0.00 38.56 3.07
387 388 6.961359 TCATTACGAACTGTAGTTTCATGG 57.039 37.500 0.00 0.00 38.56 3.66
388 389 6.693466 TCATTACGAACTGTAGTTTCATGGA 58.307 36.000 0.00 0.00 38.56 3.41
389 390 7.156000 TCATTACGAACTGTAGTTTCATGGAA 58.844 34.615 0.00 0.00 38.56 3.53
390 391 7.822334 TCATTACGAACTGTAGTTTCATGGAAT 59.178 33.333 0.00 0.00 38.56 3.01
391 392 9.093970 CATTACGAACTGTAGTTTCATGGAATA 57.906 33.333 0.00 0.00 38.56 1.75
392 393 9.832445 ATTACGAACTGTAGTTTCATGGAATAT 57.168 29.630 0.00 0.00 38.56 1.28
470 471 9.535878 TTTATAATGTTTGACTTGACCAAAACC 57.464 29.630 0.00 0.00 35.57 3.27
471 472 5.675684 AATGTTTGACTTGACCAAAACCT 57.324 34.783 0.00 0.00 35.57 3.50
472 473 6.783708 AATGTTTGACTTGACCAAAACCTA 57.216 33.333 0.00 0.00 35.57 3.08
473 474 6.783708 ATGTTTGACTTGACCAAAACCTAA 57.216 33.333 0.00 0.00 35.57 2.69
474 475 6.783708 TGTTTGACTTGACCAAAACCTAAT 57.216 33.333 0.00 0.00 35.57 1.73
475 476 7.883391 TGTTTGACTTGACCAAAACCTAATA 57.117 32.000 0.00 0.00 35.57 0.98
476 477 7.708998 TGTTTGACTTGACCAAAACCTAATAC 58.291 34.615 0.00 0.00 35.57 1.89
477 478 6.548441 TTGACTTGACCAAAACCTAATACG 57.452 37.500 0.00 0.00 0.00 3.06
478 479 4.453136 TGACTTGACCAAAACCTAATACGC 59.547 41.667 0.00 0.00 0.00 4.42
479 480 3.434299 ACTTGACCAAAACCTAATACGCG 59.566 43.478 3.53 3.53 0.00 6.01
480 481 3.316071 TGACCAAAACCTAATACGCGA 57.684 42.857 15.93 0.00 0.00 5.87
481 482 3.661944 TGACCAAAACCTAATACGCGAA 58.338 40.909 15.93 0.00 0.00 4.70
482 483 3.680937 TGACCAAAACCTAATACGCGAAG 59.319 43.478 15.93 4.20 0.00 3.79
483 484 3.667360 ACCAAAACCTAATACGCGAAGT 58.333 40.909 15.93 0.00 0.00 3.01
484 485 4.819769 ACCAAAACCTAATACGCGAAGTA 58.180 39.130 15.93 0.00 40.03 2.24
485 486 5.237048 ACCAAAACCTAATACGCGAAGTAA 58.763 37.500 15.93 0.00 39.04 2.24
486 487 5.700373 ACCAAAACCTAATACGCGAAGTAAA 59.300 36.000 15.93 0.00 39.04 2.01
487 488 6.204495 ACCAAAACCTAATACGCGAAGTAAAA 59.796 34.615 15.93 0.00 39.04 1.52
488 489 7.076983 CCAAAACCTAATACGCGAAGTAAAAA 58.923 34.615 15.93 0.00 39.04 1.94
533 534 8.596781 ACTATATCACTTGACTAAGACTTGGT 57.403 34.615 3.54 3.54 37.36 3.67
534 535 9.036980 ACTATATCACTTGACTAAGACTTGGTT 57.963 33.333 5.60 0.00 37.36 3.67
537 538 9.877178 ATATCACTTGACTAAGACTTGGTTAAG 57.123 33.333 25.18 25.18 41.42 1.85
538 539 7.120923 TCACTTGACTAAGACTTGGTTAAGT 57.879 36.000 26.19 26.19 46.61 2.24
539 540 7.562135 TCACTTGACTAAGACTTGGTTAAGTT 58.438 34.615 28.10 16.66 44.51 2.66
540 541 8.044908 TCACTTGACTAAGACTTGGTTAAGTTT 58.955 33.333 28.10 13.43 44.51 2.66
541 542 8.336080 CACTTGACTAAGACTTGGTTAAGTTTC 58.664 37.037 28.10 7.86 44.51 2.78
542 543 8.044908 ACTTGACTAAGACTTGGTTAAGTTTCA 58.955 33.333 26.19 8.80 44.51 2.69
543 544 8.433421 TTGACTAAGACTTGGTTAAGTTTCAG 57.567 34.615 5.60 0.00 46.79 3.02
544 545 7.562135 TGACTAAGACTTGGTTAAGTTTCAGT 58.438 34.615 5.60 0.00 46.79 3.41
545 546 7.709613 TGACTAAGACTTGGTTAAGTTTCAGTC 59.290 37.037 5.60 6.93 46.79 3.51
546 547 5.986004 AAGACTTGGTTAAGTTTCAGTCG 57.014 39.130 0.00 0.00 46.79 4.18
547 548 5.272283 AGACTTGGTTAAGTTTCAGTCGA 57.728 39.130 0.00 0.00 46.79 4.20
548 549 5.048507 AGACTTGGTTAAGTTTCAGTCGAC 58.951 41.667 7.70 7.70 46.79 4.20
549 550 5.019785 ACTTGGTTAAGTTTCAGTCGACT 57.980 39.130 13.58 13.58 44.57 4.18
550 551 4.809426 ACTTGGTTAAGTTTCAGTCGACTG 59.191 41.667 34.76 34.76 44.57 3.51
551 552 5.394883 ACTTGGTTAAGTTTCAGTCGACTGA 60.395 40.000 37.87 37.87 45.94 3.41
552 553 7.175423 ACTTGGTTAAGTTTCAGTCGACTGAG 61.175 42.308 38.32 26.91 44.63 3.35
553 554 9.242291 ACTTGGTTAAGTTTCAGTCGACTGAGA 62.242 40.741 38.32 33.88 44.63 3.27
560 561 2.923605 CAGTCGACTGAGACCTAACC 57.076 55.000 36.73 0.00 46.59 2.85
561 562 2.160205 CAGTCGACTGAGACCTAACCA 58.840 52.381 36.73 0.00 46.59 3.67
562 563 2.095161 CAGTCGACTGAGACCTAACCAC 60.095 54.545 36.73 0.00 46.59 4.16
563 564 1.884579 GTCGACTGAGACCTAACCACA 59.115 52.381 8.70 0.00 35.22 4.17
564 565 1.884579 TCGACTGAGACCTAACCACAC 59.115 52.381 0.00 0.00 0.00 3.82
565 566 1.067776 CGACTGAGACCTAACCACACC 60.068 57.143 0.00 0.00 0.00 4.16
566 567 1.275573 GACTGAGACCTAACCACACCC 59.724 57.143 0.00 0.00 0.00 4.61
567 568 1.348064 CTGAGACCTAACCACACCCA 58.652 55.000 0.00 0.00 0.00 4.51
568 569 1.909302 CTGAGACCTAACCACACCCAT 59.091 52.381 0.00 0.00 0.00 4.00
569 570 3.104512 CTGAGACCTAACCACACCCATA 58.895 50.000 0.00 0.00 0.00 2.74
570 571 3.517901 CTGAGACCTAACCACACCCATAA 59.482 47.826 0.00 0.00 0.00 1.90
571 572 4.108570 TGAGACCTAACCACACCCATAAT 58.891 43.478 0.00 0.00 0.00 1.28
572 573 5.282129 TGAGACCTAACCACACCCATAATA 58.718 41.667 0.00 0.00 0.00 0.98
573 574 5.727279 TGAGACCTAACCACACCCATAATAA 59.273 40.000 0.00 0.00 0.00 1.40
574 575 6.215841 TGAGACCTAACCACACCCATAATAAA 59.784 38.462 0.00 0.00 0.00 1.40
575 576 7.034967 AGACCTAACCACACCCATAATAAAA 57.965 36.000 0.00 0.00 0.00 1.52
576 577 7.471890 AGACCTAACCACACCCATAATAAAAA 58.528 34.615 0.00 0.00 0.00 1.94
592 593 2.568623 AAAAACAGATGAGAGCCCGT 57.431 45.000 0.00 0.00 0.00 5.28
593 594 2.100605 AAAACAGATGAGAGCCCGTC 57.899 50.000 0.00 0.00 0.00 4.79
594 595 1.270907 AAACAGATGAGAGCCCGTCT 58.729 50.000 0.00 0.00 38.71 4.18
595 596 2.145397 AACAGATGAGAGCCCGTCTA 57.855 50.000 0.00 0.00 34.71 2.59
748 776 2.045242 TCCGAGACCGAGAGTGGG 60.045 66.667 0.00 0.00 38.22 4.61
749 777 3.827898 CCGAGACCGAGAGTGGGC 61.828 72.222 0.00 0.00 38.22 5.36
750 778 3.062466 CGAGACCGAGAGTGGGCA 61.062 66.667 0.00 0.00 40.67 5.36
751 779 2.574399 GAGACCGAGAGTGGGCAC 59.426 66.667 0.00 0.00 40.67 5.01
786 814 1.751552 GTACCGCTCTAATCCGAACG 58.248 55.000 0.00 0.00 0.00 3.95
877 906 1.588674 AAACAACAAGCCATCGTCGA 58.411 45.000 0.00 0.00 0.00 4.20
879 908 0.670546 ACAACAAGCCATCGTCGAGG 60.671 55.000 0.00 0.00 0.00 4.63
940 969 1.627834 CCAATATCCTCCCTGCTCCTC 59.372 57.143 0.00 0.00 0.00 3.71
959 988 0.876342 CGCTCCTTGCTCGGTTATCC 60.876 60.000 0.00 0.00 40.11 2.59
1046 1081 4.748144 CTTGACCAGCCCAGGCCC 62.748 72.222 4.70 0.00 43.17 5.80
1151 1189 1.580845 CCTCAGTTTCAGCCTTGGCG 61.581 60.000 5.95 1.88 0.00 5.69
1183 1221 0.031314 ATGCTCAGCGAGGTATGTCG 59.969 55.000 0.00 0.00 43.08 4.35
1197 1235 1.629043 ATGTCGGTGTGTGTACCTCT 58.371 50.000 0.00 0.00 38.62 3.69
1198 1236 0.671796 TGTCGGTGTGTGTACCTCTG 59.328 55.000 0.00 0.00 38.62 3.35
1199 1237 0.666577 GTCGGTGTGTGTACCTCTGC 60.667 60.000 0.00 0.00 38.62 4.26
1200 1238 0.826256 TCGGTGTGTGTACCTCTGCT 60.826 55.000 0.00 0.00 38.62 4.24
1201 1239 0.667487 CGGTGTGTGTACCTCTGCTG 60.667 60.000 0.00 0.00 38.62 4.41
1202 1240 0.951040 GGTGTGTGTACCTCTGCTGC 60.951 60.000 0.00 0.00 37.74 5.25
1203 1241 0.249868 GTGTGTGTACCTCTGCTGCA 60.250 55.000 0.88 0.88 0.00 4.41
1204 1242 0.033920 TGTGTGTACCTCTGCTGCAG 59.966 55.000 23.31 23.31 0.00 4.41
1221 1259 0.949397 CAGTGCTGCTGCTGAAGAAA 59.051 50.000 17.00 0.00 38.52 2.52
1246 1284 4.100707 TGCTGCTATTTGATTCTTGTGC 57.899 40.909 0.00 0.00 0.00 4.57
1252 1292 4.554973 GCTATTTGATTCTTGTGCGTGTTC 59.445 41.667 0.00 0.00 0.00 3.18
1257 1297 3.058983 TGATTCTTGTGCGTGTTCATGTC 60.059 43.478 0.00 0.00 0.00 3.06
1260 1300 2.877786 TCTTGTGCGTGTTCATGTCATT 59.122 40.909 0.00 0.00 0.00 2.57
1261 1301 2.684754 TGTGCGTGTTCATGTCATTG 57.315 45.000 0.00 0.00 0.00 2.82
1280 1320 1.145738 TGGAGCAAGCTTCTTCCCTTT 59.854 47.619 18.56 0.00 0.00 3.11
1374 1424 1.548719 TCACTGTAGGATGGGTGAACG 59.451 52.381 0.00 0.00 36.04 3.95
1438 1488 5.485353 TCTCTCACCATACCTTTCATGTTCT 59.515 40.000 0.00 0.00 0.00 3.01
1448 1498 3.057736 CCTTTCATGTTCTGTGCAGGAAG 60.058 47.826 2.70 0.00 37.81 3.46
1475 1525 2.867109 ATTTCAGTGTCACTGGGAGG 57.133 50.000 28.47 7.00 45.94 4.30
1476 1526 1.801242 TTTCAGTGTCACTGGGAGGA 58.199 50.000 28.47 9.83 45.94 3.71
1525 1575 9.442047 AAGCCATTATAGTAGTAGCATGAAATC 57.558 33.333 0.00 0.00 0.00 2.17
1571 1621 5.381174 TTGGAAACTTCTTCATCTGCATG 57.619 39.130 0.00 0.00 0.00 4.06
1572 1622 4.401022 TGGAAACTTCTTCATCTGCATGT 58.599 39.130 0.00 0.00 0.00 3.21
1574 1624 5.302568 TGGAAACTTCTTCATCTGCATGTTT 59.697 36.000 0.00 0.00 0.00 2.83
1575 1625 5.860716 GGAAACTTCTTCATCTGCATGTTTC 59.139 40.000 0.00 0.00 40.37 2.78
1580 1632 3.814842 TCTTCATCTGCATGTTTCGTGTT 59.185 39.130 0.00 0.00 0.00 3.32
1604 1656 2.349886 GTCATCGCAACATTCCACTCTC 59.650 50.000 0.00 0.00 0.00 3.20
1619 1671 4.094294 TCCACTCTCCATTTTAAATTCGCG 59.906 41.667 0.00 0.00 0.00 5.87
1669 1723 1.715519 CTGCAAAAACATTCTTCGCGG 59.284 47.619 6.13 0.00 0.00 6.46
1679 1733 0.460284 TTCTTCGCGGCCATCTTCTC 60.460 55.000 6.13 0.00 0.00 2.87
1689 1743 2.553172 GGCCATCTTCTCAGATTGCATC 59.447 50.000 0.00 0.00 45.94 3.91
1714 1768 6.205464 CGCATGGATAAACACCAATAAGATCT 59.795 38.462 0.00 0.00 40.93 2.75
1746 1800 1.442857 CGTGTCGGCTGTCAGAGAC 60.443 63.158 17.07 17.07 0.00 3.36
1772 1826 2.397413 CTGAACCACCGAGCAACCCT 62.397 60.000 0.00 0.00 0.00 4.34
1788 1842 2.334946 CCTGGTTGGTGCATGTCCG 61.335 63.158 0.00 0.00 0.00 4.79
1790 1844 1.577328 CTGGTTGGTGCATGTCCGTC 61.577 60.000 0.00 0.00 0.00 4.79
1853 1911 3.607163 CCAATCATTGGCAGGCGT 58.393 55.556 2.63 0.00 45.17 5.68
1862 1920 2.125512 GGCAGGCGTGTAGTCCAG 60.126 66.667 8.40 0.00 0.00 3.86
1923 1981 1.006102 AGTTCCAAGCAGTCGACGG 60.006 57.895 11.64 11.64 0.00 4.79
2151 2209 2.811317 CTGCAGCGGTCGGAGAAC 60.811 66.667 0.00 0.00 43.60 3.01
2165 2223 1.863662 GAGAACCGTCGACTGAGGCA 61.864 60.000 14.31 0.00 0.00 4.75
2193 2251 4.514577 CTCCTACCAGGCGGCGTG 62.515 72.222 15.33 15.33 34.61 5.34
2240 2298 1.315257 CCCTCCTTGTGGCCATTTCG 61.315 60.000 9.72 0.00 0.00 3.46
2344 2402 0.935196 AAAGCGTTCGTGACAGGTTC 59.065 50.000 0.00 0.00 0.00 3.62
2345 2403 1.213094 AAGCGTTCGTGACAGGTTCG 61.213 55.000 9.12 9.12 0.00 3.95
2366 2425 1.856265 CTCGCCCCTGAAAACTGTGC 61.856 60.000 0.00 0.00 0.00 4.57
2383 2442 1.270550 GTGCCCAAGTTTCCATCTGTG 59.729 52.381 0.00 0.00 0.00 3.66
2398 2457 3.181967 GTGCTGCTACGTGGCTCG 61.182 66.667 24.82 16.11 46.00 5.03
2723 2786 7.342581 TGAACTTAGTAATGATGGGCATTGTA 58.657 34.615 0.00 0.00 46.38 2.41
2804 2868 4.399395 TGCCAGGAAGAGCAGCCG 62.399 66.667 0.00 0.00 33.08 5.52
2837 2901 1.262417 TGGTGTTCGAGTATGCTCCA 58.738 50.000 5.13 0.00 38.49 3.86
2846 2910 0.676782 AGTATGCTCCAAACGGCACC 60.677 55.000 0.00 0.00 41.39 5.01
2980 3050 4.988716 ACCTGGACTGGCCGACGA 62.989 66.667 0.00 0.00 40.66 4.20
3105 3175 2.100631 CGACTTCGCGGCCAAGATT 61.101 57.895 14.31 0.00 0.00 2.40
3111 3181 3.211963 GCGGCCAAGATTGCGGAT 61.212 61.111 2.24 0.00 0.00 4.18
3126 3196 1.554392 CGGATGTCTTCTTCTGCTCG 58.446 55.000 0.00 0.00 0.00 5.03
3201 3277 2.282958 TCCGACAGGGAGAGCGTT 60.283 61.111 0.00 0.00 40.94 4.84
3324 3400 3.363844 GAGGCAGCTGAGGGACGTC 62.364 68.421 20.43 7.13 0.00 4.34
3393 3469 2.758327 AGGCTGGACGGCGTGATA 60.758 61.111 21.19 1.70 44.22 2.15
3559 3660 2.204059 AGGCCACCTGAAGGAGCT 60.204 61.111 5.01 0.00 37.85 4.09
3560 3661 2.045536 GGCCACCTGAAGGAGCTG 60.046 66.667 2.62 0.00 37.85 4.24
3580 3681 4.002982 CTGAGCATACAGGTTTGCTACAA 58.997 43.478 15.63 5.99 45.46 2.41
3590 3692 4.929808 CAGGTTTGCTACAAGAGTTCGTAT 59.070 41.667 0.00 0.00 0.00 3.06
3593 3695 5.290400 GGTTTGCTACAAGAGTTCGTATACC 59.710 44.000 0.00 0.00 0.00 2.73
3602 3704 5.717078 AGAGTTCGTATACCAACAGTTGA 57.283 39.130 15.36 0.00 0.00 3.18
3634 3736 1.398390 GTGCAAGTGGTGTAGCATAGC 59.602 52.381 0.00 0.00 39.43 2.97
3636 3738 2.292267 GCAAGTGGTGTAGCATAGCAT 58.708 47.619 0.00 0.00 0.00 3.79
3643 3745 3.704061 TGGTGTAGCATAGCATAGTGACA 59.296 43.478 0.00 0.00 0.00 3.58
3653 3755 2.154462 GCATAGTGACAAAGGTGTGCT 58.846 47.619 0.00 0.00 38.41 4.40
3672 3774 5.080068 GTGCTTGTATTTTCGCTTCACTAC 58.920 41.667 0.00 0.00 0.00 2.73
3709 3812 5.063204 TGTCCAGATTTTGTAACCAGACTG 58.937 41.667 0.00 0.00 0.00 3.51
3713 3816 4.154918 CAGATTTTGTAACCAGACTGCCTC 59.845 45.833 0.00 0.00 0.00 4.70
3742 3854 2.253758 GCAGCTCGCAGAAACACCA 61.254 57.895 3.64 0.00 41.79 4.17
3757 3869 2.983229 ACACCATGCAGAAGAGACATC 58.017 47.619 0.00 0.00 0.00 3.06
3765 3969 2.272678 CAGAAGAGACATCAGCAGCAG 58.727 52.381 0.00 0.00 0.00 4.24
3841 4045 1.400242 GCTGTTCAAGACGTCCAATGC 60.400 52.381 13.01 8.01 0.00 3.56
3979 4183 3.907474 TGGTACCCTTCTGTTCATCTGAA 59.093 43.478 10.07 0.00 33.95 3.02
3994 4198 1.064611 TCTGAACCAAACCCAAACGGA 60.065 47.619 0.00 0.00 34.64 4.69
4062 4266 5.627367 CGCAAGATAATTTCTCGTCTAGGAG 59.373 44.000 0.00 0.00 43.02 3.69
4152 4356 0.969894 ACTCCCTCAGGAACTCAACG 59.030 55.000 0.00 0.00 43.40 4.10
4248 4460 1.373497 AGCCTTTGTCACGCTCTCG 60.373 57.895 0.00 0.00 42.43 4.04
4264 4478 3.243336 CTCTCGTCCCTGAAAGTAAACG 58.757 50.000 0.00 0.00 34.06 3.60
4389 4603 1.672881 ACAGCTTCAGTGAACTGCAAC 59.327 47.619 23.75 4.96 43.46 4.17
4395 4609 3.198409 TCAGTGAACTGCAACAGATGT 57.802 42.857 5.55 0.00 43.46 3.06
4458 4672 2.036089 GCCCTGTAGTATGCCAGAGTAC 59.964 54.545 0.00 0.00 0.00 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.827368 AAGATCACCGCCTTCTCCTC 59.173 55.000 0.00 0.00 0.00 3.71
1 2 1.208293 GAAAGATCACCGCCTTCTCCT 59.792 52.381 0.00 0.00 0.00 3.69
2 3 1.657822 GAAAGATCACCGCCTTCTCC 58.342 55.000 0.00 0.00 0.00 3.71
3 4 1.281899 CGAAAGATCACCGCCTTCTC 58.718 55.000 0.00 0.00 0.00 2.87
5 6 1.128692 CAACGAAAGATCACCGCCTTC 59.871 52.381 0.00 0.00 0.00 3.46
6 7 1.156736 CAACGAAAGATCACCGCCTT 58.843 50.000 0.00 0.00 0.00 4.35
7 8 1.298859 GCAACGAAAGATCACCGCCT 61.299 55.000 0.00 0.00 0.00 5.52
8 9 1.134694 GCAACGAAAGATCACCGCC 59.865 57.895 0.00 0.00 0.00 6.13
9 10 0.095417 GAGCAACGAAAGATCACCGC 59.905 55.000 0.00 0.00 0.00 5.68
10 11 0.721718 GGAGCAACGAAAGATCACCG 59.278 55.000 0.00 0.00 0.00 4.94
11 12 1.087501 GGGAGCAACGAAAGATCACC 58.912 55.000 0.00 0.00 0.00 4.02
12 13 1.734465 CTGGGAGCAACGAAAGATCAC 59.266 52.381 0.00 0.00 0.00 3.06
13 14 1.623311 TCTGGGAGCAACGAAAGATCA 59.377 47.619 0.00 0.00 0.00 2.92
14 15 2.275318 CTCTGGGAGCAACGAAAGATC 58.725 52.381 0.00 0.00 0.00 2.75
15 16 2.393271 CTCTGGGAGCAACGAAAGAT 57.607 50.000 0.00 0.00 0.00 2.40
16 17 3.914984 CTCTGGGAGCAACGAAAGA 57.085 52.632 0.00 0.00 0.00 2.52
26 27 2.583520 GTCAGCTGGCTCTGGGAG 59.416 66.667 12.09 0.00 34.91 4.30
27 28 3.385384 CGTCAGCTGGCTCTGGGA 61.385 66.667 17.70 0.00 34.91 4.37
28 29 2.849120 CTTCGTCAGCTGGCTCTGGG 62.849 65.000 17.70 0.00 34.91 4.45
29 30 1.447489 CTTCGTCAGCTGGCTCTGG 60.447 63.158 17.70 0.00 34.91 3.86
30 31 1.447489 CCTTCGTCAGCTGGCTCTG 60.447 63.158 17.70 5.58 35.46 3.35
31 32 1.882989 GACCTTCGTCAGCTGGCTCT 61.883 60.000 17.70 0.00 38.99 4.09
32 33 1.446966 GACCTTCGTCAGCTGGCTC 60.447 63.158 17.70 2.40 38.99 4.70
33 34 1.882989 GAGACCTTCGTCAGCTGGCT 61.883 60.000 17.70 0.00 41.87 4.75
34 35 1.446966 GAGACCTTCGTCAGCTGGC 60.447 63.158 15.13 12.04 41.87 4.85
35 36 0.108898 CTGAGACCTTCGTCAGCTGG 60.109 60.000 15.13 0.00 41.87 4.85
36 37 3.415237 CTGAGACCTTCGTCAGCTG 57.585 57.895 7.63 7.63 41.87 4.24
39 40 0.179176 CGAGCTGAGACCTTCGTCAG 60.179 60.000 0.00 0.00 41.87 3.51
40 41 0.605589 TCGAGCTGAGACCTTCGTCA 60.606 55.000 0.00 0.00 41.87 4.35
41 42 0.736053 ATCGAGCTGAGACCTTCGTC 59.264 55.000 0.00 0.00 39.50 4.20
42 43 0.453793 CATCGAGCTGAGACCTTCGT 59.546 55.000 0.00 0.00 34.83 3.85
43 44 0.735471 TCATCGAGCTGAGACCTTCG 59.265 55.000 0.00 0.00 34.56 3.79
44 45 2.100584 ACATCATCGAGCTGAGACCTTC 59.899 50.000 0.00 0.00 0.00 3.46
45 46 2.100584 GACATCATCGAGCTGAGACCTT 59.899 50.000 0.00 0.00 0.00 3.50
46 47 1.680735 GACATCATCGAGCTGAGACCT 59.319 52.381 0.00 0.00 0.00 3.85
47 48 1.680735 AGACATCATCGAGCTGAGACC 59.319 52.381 0.00 0.00 0.00 3.85
48 49 2.357323 TGAGACATCATCGAGCTGAGAC 59.643 50.000 0.00 0.00 0.00 3.36
49 50 2.617774 CTGAGACATCATCGAGCTGAGA 59.382 50.000 0.00 0.00 34.12 3.27
50 51 2.358582 ACTGAGACATCATCGAGCTGAG 59.641 50.000 0.00 0.00 34.12 3.35
51 52 2.098770 CACTGAGACATCATCGAGCTGA 59.901 50.000 0.00 0.00 34.12 4.26
52 53 2.098770 TCACTGAGACATCATCGAGCTG 59.901 50.000 0.00 0.00 34.12 4.24
53 54 2.358582 CTCACTGAGACATCATCGAGCT 59.641 50.000 0.00 0.00 34.12 4.09
54 55 2.098934 ACTCACTGAGACATCATCGAGC 59.901 50.000 13.25 0.00 37.23 5.03
55 56 4.574421 ACTACTCACTGAGACATCATCGAG 59.426 45.833 13.25 0.00 38.59 4.04
56 57 4.333926 CACTACTCACTGAGACATCATCGA 59.666 45.833 13.25 0.00 34.12 3.59
57 58 4.596097 CACTACTCACTGAGACATCATCG 58.404 47.826 13.25 0.00 34.12 3.84
58 59 4.358851 GCACTACTCACTGAGACATCATC 58.641 47.826 13.25 0.00 34.12 2.92
59 60 3.181492 CGCACTACTCACTGAGACATCAT 60.181 47.826 13.25 0.00 34.12 2.45
60 61 2.162408 CGCACTACTCACTGAGACATCA 59.838 50.000 13.25 0.00 33.32 3.07
61 62 2.791567 CGCACTACTCACTGAGACATC 58.208 52.381 13.25 0.00 33.32 3.06
62 63 1.135257 GCGCACTACTCACTGAGACAT 60.135 52.381 13.25 0.00 33.32 3.06
63 64 0.241213 GCGCACTACTCACTGAGACA 59.759 55.000 13.25 0.00 33.32 3.41
64 65 0.794981 CGCGCACTACTCACTGAGAC 60.795 60.000 13.25 0.00 33.32 3.36
65 66 1.502190 CGCGCACTACTCACTGAGA 59.498 57.895 13.25 0.00 33.32 3.27
66 67 1.515088 CCGCGCACTACTCACTGAG 60.515 63.158 8.75 4.36 35.52 3.35
67 68 1.923227 CTCCGCGCACTACTCACTGA 61.923 60.000 8.75 0.00 0.00 3.41
68 69 1.515088 CTCCGCGCACTACTCACTG 60.515 63.158 8.75 0.00 0.00 3.66
69 70 1.241990 TTCTCCGCGCACTACTCACT 61.242 55.000 8.75 0.00 0.00 3.41
70 71 0.798771 CTTCTCCGCGCACTACTCAC 60.799 60.000 8.75 0.00 0.00 3.51
71 72 1.506718 CTTCTCCGCGCACTACTCA 59.493 57.895 8.75 0.00 0.00 3.41
72 73 1.226717 CCTTCTCCGCGCACTACTC 60.227 63.158 8.75 0.00 0.00 2.59
73 74 2.885861 CCTTCTCCGCGCACTACT 59.114 61.111 8.75 0.00 0.00 2.57
74 75 2.886124 GCCTTCTCCGCGCACTAC 60.886 66.667 8.75 0.00 0.00 2.73
75 76 3.356639 CTGCCTTCTCCGCGCACTA 62.357 63.158 8.75 0.00 0.00 2.74
76 77 4.749310 CTGCCTTCTCCGCGCACT 62.749 66.667 8.75 0.00 0.00 4.40
82 83 4.069232 TCACCGCTGCCTTCTCCG 62.069 66.667 0.00 0.00 0.00 4.63
83 84 2.435059 GTCACCGCTGCCTTCTCC 60.435 66.667 0.00 0.00 0.00 3.71
84 85 2.435059 GGTCACCGCTGCCTTCTC 60.435 66.667 0.00 0.00 0.00 2.87
85 86 4.379243 CGGTCACCGCTGCCTTCT 62.379 66.667 1.50 0.00 41.17 2.85
102 103 2.476619 CACAACATTGAGACTCGTGGTC 59.523 50.000 11.11 3.77 44.80 4.02
103 104 2.483876 CACAACATTGAGACTCGTGGT 58.516 47.619 11.11 3.15 0.00 4.16
104 105 1.195448 GCACAACATTGAGACTCGTGG 59.805 52.381 11.11 0.00 0.00 4.94
105 106 1.136529 CGCACAACATTGAGACTCGTG 60.137 52.381 0.00 2.24 0.00 4.35
106 107 1.139989 CGCACAACATTGAGACTCGT 58.860 50.000 0.00 0.00 0.00 4.18
107 108 0.439985 CCGCACAACATTGAGACTCG 59.560 55.000 0.00 0.00 0.00 4.18
108 109 0.798776 CCCGCACAACATTGAGACTC 59.201 55.000 0.00 0.00 0.00 3.36
109 110 1.237285 GCCCGCACAACATTGAGACT 61.237 55.000 0.00 0.00 0.00 3.24
110 111 1.210155 GCCCGCACAACATTGAGAC 59.790 57.895 0.00 0.00 0.00 3.36
111 112 1.073025 AGCCCGCACAACATTGAGA 59.927 52.632 0.00 0.00 0.00 3.27
112 113 1.210931 CAGCCCGCACAACATTGAG 59.789 57.895 0.00 0.00 0.00 3.02
113 114 2.267351 CCAGCCCGCACAACATTGA 61.267 57.895 0.00 0.00 0.00 2.57
114 115 1.240641 TACCAGCCCGCACAACATTG 61.241 55.000 0.00 0.00 0.00 2.82
115 116 1.074072 TACCAGCCCGCACAACATT 59.926 52.632 0.00 0.00 0.00 2.71
116 117 1.674322 GTACCAGCCCGCACAACAT 60.674 57.895 0.00 0.00 0.00 2.71
117 118 2.281208 GTACCAGCCCGCACAACA 60.281 61.111 0.00 0.00 0.00 3.33
118 119 2.032071 AGTACCAGCCCGCACAAC 59.968 61.111 0.00 0.00 0.00 3.32
119 120 2.031919 CAGTACCAGCCCGCACAA 59.968 61.111 0.00 0.00 0.00 3.33
120 121 4.697756 GCAGTACCAGCCCGCACA 62.698 66.667 0.00 0.00 0.00 4.57
121 122 4.394712 AGCAGTACCAGCCCGCAC 62.395 66.667 4.43 0.00 0.00 5.34
122 123 4.393155 CAGCAGTACCAGCCCGCA 62.393 66.667 4.43 0.00 0.00 5.69
123 124 3.901797 AACAGCAGTACCAGCCCGC 62.902 63.158 4.43 0.00 0.00 6.13
124 125 1.298859 GAAACAGCAGTACCAGCCCG 61.299 60.000 4.43 0.00 0.00 6.13
125 126 0.036875 AGAAACAGCAGTACCAGCCC 59.963 55.000 4.43 0.00 0.00 5.19
126 127 1.807142 GAAGAAACAGCAGTACCAGCC 59.193 52.381 4.43 0.00 0.00 4.85
127 128 1.461127 CGAAGAAACAGCAGTACCAGC 59.539 52.381 0.00 0.00 0.00 4.85
128 129 2.069273 CCGAAGAAACAGCAGTACCAG 58.931 52.381 0.00 0.00 0.00 4.00
129 130 1.876416 GCCGAAGAAACAGCAGTACCA 60.876 52.381 0.00 0.00 0.00 3.25
130 131 0.796927 GCCGAAGAAACAGCAGTACC 59.203 55.000 0.00 0.00 0.00 3.34
131 132 0.438830 CGCCGAAGAAACAGCAGTAC 59.561 55.000 0.00 0.00 0.00 2.73
132 133 1.289109 GCGCCGAAGAAACAGCAGTA 61.289 55.000 0.00 0.00 0.00 2.74
133 134 2.607892 GCGCCGAAGAAACAGCAGT 61.608 57.895 0.00 0.00 0.00 4.40
134 135 2.174349 GCGCCGAAGAAACAGCAG 59.826 61.111 0.00 0.00 0.00 4.24
135 136 2.590291 TGCGCCGAAGAAACAGCA 60.590 55.556 4.18 0.00 0.00 4.41
136 137 2.127232 GTGCGCCGAAGAAACAGC 60.127 61.111 4.18 0.00 0.00 4.40
137 138 2.170985 CGTGCGCCGAAGAAACAG 59.829 61.111 4.18 0.00 39.56 3.16
138 139 4.007940 GCGTGCGCCGAAGAAACA 62.008 61.111 20.06 0.00 39.56 2.83
139 140 3.631049 GAGCGTGCGCCGAAGAAAC 62.631 63.158 20.06 2.16 43.17 2.78
140 141 3.411351 GAGCGTGCGCCGAAGAAA 61.411 61.111 20.06 0.00 43.17 2.52
143 144 3.774959 ATAGGAGCGTGCGCCGAAG 62.775 63.158 20.06 3.53 43.17 3.79
144 145 3.833645 ATAGGAGCGTGCGCCGAA 61.834 61.111 20.06 2.29 43.17 4.30
145 146 4.569023 CATAGGAGCGTGCGCCGA 62.569 66.667 20.06 4.35 43.17 5.54
146 147 4.873129 ACATAGGAGCGTGCGCCG 62.873 66.667 13.21 9.69 43.17 6.46
147 148 2.962253 GACATAGGAGCGTGCGCC 60.962 66.667 13.21 6.50 43.17 6.53
148 149 1.946650 GAGACATAGGAGCGTGCGC 60.947 63.158 8.67 8.67 42.33 6.09
149 150 0.593518 CTGAGACATAGGAGCGTGCG 60.594 60.000 0.00 0.00 0.00 5.34
150 151 0.457851 ACTGAGACATAGGAGCGTGC 59.542 55.000 0.00 0.00 0.00 5.34
151 152 1.268285 CGACTGAGACATAGGAGCGTG 60.268 57.143 0.00 0.00 0.00 5.34
152 153 1.018148 CGACTGAGACATAGGAGCGT 58.982 55.000 0.00 0.00 0.00 5.07
153 154 1.300481 TCGACTGAGACATAGGAGCG 58.700 55.000 0.00 0.00 0.00 5.03
154 155 4.069304 AGTATCGACTGAGACATAGGAGC 58.931 47.826 0.00 0.00 38.81 4.70
155 156 8.255206 ACTATAGTATCGACTGAGACATAGGAG 58.745 40.741 2.75 0.00 38.81 3.69
156 157 8.136563 ACTATAGTATCGACTGAGACATAGGA 57.863 38.462 2.75 0.00 38.81 2.94
157 158 8.255206 AGACTATAGTATCGACTGAGACATAGG 58.745 40.741 5.09 0.00 38.81 2.57
158 159 9.647797 AAGACTATAGTATCGACTGAGACATAG 57.352 37.037 5.09 1.98 38.81 2.23
159 160 9.999660 AAAGACTATAGTATCGACTGAGACATA 57.000 33.333 5.09 0.00 38.81 2.29
160 161 8.911918 AAAGACTATAGTATCGACTGAGACAT 57.088 34.615 5.09 0.00 38.81 3.06
161 162 8.734218 AAAAGACTATAGTATCGACTGAGACA 57.266 34.615 5.09 0.00 38.81 3.41
179 180 8.388103 CGAATGTCCATACGAAATTAAAAGACT 58.612 33.333 0.00 0.00 27.66 3.24
180 181 8.173130 ACGAATGTCCATACGAAATTAAAAGAC 58.827 33.333 0.00 0.00 27.66 3.01
181 182 8.172484 CACGAATGTCCATACGAAATTAAAAGA 58.828 33.333 0.00 0.00 27.66 2.52
182 183 7.044966 GCACGAATGTCCATACGAAATTAAAAG 60.045 37.037 0.00 0.00 27.66 2.27
183 184 6.743627 GCACGAATGTCCATACGAAATTAAAA 59.256 34.615 0.00 0.00 27.66 1.52
184 185 6.128254 TGCACGAATGTCCATACGAAATTAAA 60.128 34.615 0.00 0.00 27.66 1.52
185 186 5.351740 TGCACGAATGTCCATACGAAATTAA 59.648 36.000 0.00 0.00 27.66 1.40
186 187 4.870991 TGCACGAATGTCCATACGAAATTA 59.129 37.500 0.00 0.00 27.66 1.40
187 188 3.687212 TGCACGAATGTCCATACGAAATT 59.313 39.130 0.00 0.00 30.44 1.82
188 189 3.266636 TGCACGAATGTCCATACGAAAT 58.733 40.909 0.00 0.00 0.00 2.17
189 190 2.689646 TGCACGAATGTCCATACGAAA 58.310 42.857 0.00 0.00 0.00 3.46
190 191 2.371910 TGCACGAATGTCCATACGAA 57.628 45.000 0.00 0.00 0.00 3.85
191 192 2.371910 TTGCACGAATGTCCATACGA 57.628 45.000 0.00 0.00 0.00 3.43
192 193 3.463533 TTTTGCACGAATGTCCATACG 57.536 42.857 0.00 0.00 0.00 3.06
235 236 5.906772 AAGACTGGAGGGAGTAAGAAAAA 57.093 39.130 0.00 0.00 0.00 1.94
236 237 5.906772 AAAGACTGGAGGGAGTAAGAAAA 57.093 39.130 0.00 0.00 0.00 2.29
237 238 5.906772 AAAAGACTGGAGGGAGTAAGAAA 57.093 39.130 0.00 0.00 0.00 2.52
238 239 5.906772 AAAAAGACTGGAGGGAGTAAGAA 57.093 39.130 0.00 0.00 0.00 2.52
280 281 6.793492 AGTAAAGATGCTTTGACTTGAGTC 57.207 37.500 4.20 4.20 44.97 3.36
281 282 7.573968 AAAGTAAAGATGCTTTGACTTGAGT 57.426 32.000 2.85 0.00 39.60 3.41
290 291 7.112452 AGTTTGGTCAAAGTAAAGATGCTTT 57.888 32.000 2.27 0.00 41.44 3.51
291 292 6.715347 AGTTTGGTCAAAGTAAAGATGCTT 57.285 33.333 2.27 0.00 32.58 3.91
292 293 6.715347 AAGTTTGGTCAAAGTAAAGATGCT 57.285 33.333 4.44 0.00 33.87 3.79
293 294 9.476202 AAATAAGTTTGGTCAAAGTAAAGATGC 57.524 29.630 4.44 0.00 33.87 3.91
321 322 9.829507 TTGACATTGTAAATGTTGATCCTTTTT 57.170 25.926 7.03 0.00 31.52 1.94
322 323 9.829507 TTTGACATTGTAAATGTTGATCCTTTT 57.170 25.926 7.03 0.00 31.52 2.27
324 325 9.643693 GATTTGACATTGTAAATGTTGATCCTT 57.356 29.630 7.03 0.00 31.52 3.36
325 326 8.805175 TGATTTGACATTGTAAATGTTGATCCT 58.195 29.630 7.03 0.00 31.52 3.24
326 327 8.984891 TGATTTGACATTGTAAATGTTGATCC 57.015 30.769 7.03 0.00 31.52 3.36
328 329 9.761504 TGTTGATTTGACATTGTAAATGTTGAT 57.238 25.926 7.03 2.84 31.52 2.57
329 330 9.761504 ATGTTGATTTGACATTGTAAATGTTGA 57.238 25.926 7.03 0.00 34.18 3.18
351 352 9.871238 ACAGTTCGTAATGAATCTAACTATGTT 57.129 29.630 0.00 0.00 39.21 2.71
356 357 9.924650 AAACTACAGTTCGTAATGAATCTAACT 57.075 29.630 0.00 0.00 39.21 2.24
358 359 9.917129 TGAAACTACAGTTCGTAATGAATCTAA 57.083 29.630 0.00 0.00 39.21 2.10
360 361 8.873830 CATGAAACTACAGTTCGTAATGAATCT 58.126 33.333 0.00 0.00 39.21 2.40
361 362 8.116753 CCATGAAACTACAGTTCGTAATGAATC 58.883 37.037 0.00 0.00 39.21 2.52
362 363 7.822334 TCCATGAAACTACAGTTCGTAATGAAT 59.178 33.333 0.00 0.00 39.21 2.57
363 364 7.156000 TCCATGAAACTACAGTTCGTAATGAA 58.844 34.615 0.00 0.00 37.25 2.57
364 365 6.693466 TCCATGAAACTACAGTTCGTAATGA 58.307 36.000 0.00 0.00 37.25 2.57
365 366 6.961359 TCCATGAAACTACAGTTCGTAATG 57.039 37.500 0.00 0.00 37.25 1.90
366 367 9.832445 ATATTCCATGAAACTACAGTTCGTAAT 57.168 29.630 0.00 0.00 37.25 1.89
444 445 9.535878 GGTTTTGGTCAAGTCAAACATTATAAA 57.464 29.630 0.00 0.00 34.34 1.40
445 446 8.919145 AGGTTTTGGTCAAGTCAAACATTATAA 58.081 29.630 0.00 0.00 34.34 0.98
446 447 8.472007 AGGTTTTGGTCAAGTCAAACATTATA 57.528 30.769 0.00 0.00 34.34 0.98
447 448 7.360113 AGGTTTTGGTCAAGTCAAACATTAT 57.640 32.000 0.00 0.00 34.34 1.28
448 449 6.783708 AGGTTTTGGTCAAGTCAAACATTA 57.216 33.333 0.00 0.00 34.34 1.90
449 450 5.675684 AGGTTTTGGTCAAGTCAAACATT 57.324 34.783 0.00 0.00 34.34 2.71
450 451 6.783708 TTAGGTTTTGGTCAAGTCAAACAT 57.216 33.333 0.00 0.00 34.34 2.71
451 452 6.783708 ATTAGGTTTTGGTCAAGTCAAACA 57.216 33.333 0.00 0.00 34.34 2.83
452 453 6.854381 CGTATTAGGTTTTGGTCAAGTCAAAC 59.146 38.462 0.00 0.00 34.34 2.93
453 454 6.513720 GCGTATTAGGTTTTGGTCAAGTCAAA 60.514 38.462 0.00 0.00 32.96 2.69
454 455 5.049267 GCGTATTAGGTTTTGGTCAAGTCAA 60.049 40.000 0.00 0.00 0.00 3.18
455 456 4.453136 GCGTATTAGGTTTTGGTCAAGTCA 59.547 41.667 0.00 0.00 0.00 3.41
456 457 4.435121 CGCGTATTAGGTTTTGGTCAAGTC 60.435 45.833 0.00 0.00 0.00 3.01
457 458 3.434299 CGCGTATTAGGTTTTGGTCAAGT 59.566 43.478 0.00 0.00 0.00 3.16
458 459 3.680937 TCGCGTATTAGGTTTTGGTCAAG 59.319 43.478 5.77 0.00 0.00 3.02
459 460 3.661944 TCGCGTATTAGGTTTTGGTCAA 58.338 40.909 5.77 0.00 0.00 3.18
460 461 3.316071 TCGCGTATTAGGTTTTGGTCA 57.684 42.857 5.77 0.00 0.00 4.02
461 462 3.681417 ACTTCGCGTATTAGGTTTTGGTC 59.319 43.478 5.77 0.00 0.00 4.02
462 463 3.667360 ACTTCGCGTATTAGGTTTTGGT 58.333 40.909 5.77 0.00 0.00 3.67
463 464 5.783100 TTACTTCGCGTATTAGGTTTTGG 57.217 39.130 5.77 0.00 0.00 3.28
507 508 9.696572 ACCAAGTCTTAGTCAAGTGATATAGTA 57.303 33.333 0.00 0.00 33.20 1.82
508 509 8.596781 ACCAAGTCTTAGTCAAGTGATATAGT 57.403 34.615 0.00 0.00 33.20 2.12
511 512 9.877178 CTTAACCAAGTCTTAGTCAAGTGATAT 57.123 33.333 0.00 0.00 33.20 1.63
512 513 8.867097 ACTTAACCAAGTCTTAGTCAAGTGATA 58.133 33.333 0.00 0.00 41.25 2.15
513 514 7.736893 ACTTAACCAAGTCTTAGTCAAGTGAT 58.263 34.615 0.00 0.00 41.25 3.06
514 515 7.120923 ACTTAACCAAGTCTTAGTCAAGTGA 57.879 36.000 0.00 0.00 41.25 3.41
515 516 7.787725 AACTTAACCAAGTCTTAGTCAAGTG 57.212 36.000 1.00 0.00 44.41 3.16
516 517 8.044908 TGAAACTTAACCAAGTCTTAGTCAAGT 58.955 33.333 0.00 0.00 44.41 3.16
517 518 8.433421 TGAAACTTAACCAAGTCTTAGTCAAG 57.567 34.615 0.00 0.00 44.41 3.02
518 519 8.044908 ACTGAAACTTAACCAAGTCTTAGTCAA 58.955 33.333 0.00 0.00 44.41 3.18
519 520 7.562135 ACTGAAACTTAACCAAGTCTTAGTCA 58.438 34.615 0.00 0.00 44.41 3.41
520 521 7.096147 CGACTGAAACTTAACCAAGTCTTAGTC 60.096 40.741 5.96 5.96 44.41 2.59
521 522 6.700520 CGACTGAAACTTAACCAAGTCTTAGT 59.299 38.462 0.00 0.00 44.41 2.24
522 523 6.921857 TCGACTGAAACTTAACCAAGTCTTAG 59.078 38.462 0.00 0.00 44.41 2.18
523 524 6.698766 GTCGACTGAAACTTAACCAAGTCTTA 59.301 38.462 8.70 0.00 44.41 2.10
524 525 5.522824 GTCGACTGAAACTTAACCAAGTCTT 59.477 40.000 8.70 0.00 44.41 3.01
525 526 5.048507 GTCGACTGAAACTTAACCAAGTCT 58.951 41.667 8.70 0.00 44.41 3.24
526 527 5.048507 AGTCGACTGAAACTTAACCAAGTC 58.951 41.667 19.30 0.00 44.41 3.01
527 528 4.809426 CAGTCGACTGAAACTTAACCAAGT 59.191 41.667 36.73 0.00 45.51 3.16
528 529 5.330271 CAGTCGACTGAAACTTAACCAAG 57.670 43.478 36.73 7.53 46.59 3.61
541 542 2.095161 GTGGTTAGGTCTCAGTCGACTG 60.095 54.545 34.76 34.76 45.08 3.51
542 543 2.161030 GTGGTTAGGTCTCAGTCGACT 58.839 52.381 13.58 13.58 34.38 4.18
543 544 1.884579 TGTGGTTAGGTCTCAGTCGAC 59.115 52.381 7.70 7.70 0.00 4.20
544 545 1.884579 GTGTGGTTAGGTCTCAGTCGA 59.115 52.381 0.00 0.00 0.00 4.20
545 546 1.067776 GGTGTGGTTAGGTCTCAGTCG 60.068 57.143 0.00 0.00 0.00 4.18
546 547 1.275573 GGGTGTGGTTAGGTCTCAGTC 59.724 57.143 0.00 0.00 0.00 3.51
547 548 1.349067 GGGTGTGGTTAGGTCTCAGT 58.651 55.000 0.00 0.00 0.00 3.41
548 549 1.348064 TGGGTGTGGTTAGGTCTCAG 58.652 55.000 0.00 0.00 0.00 3.35
549 550 2.038863 ATGGGTGTGGTTAGGTCTCA 57.961 50.000 0.00 0.00 0.00 3.27
550 551 4.772886 ATTATGGGTGTGGTTAGGTCTC 57.227 45.455 0.00 0.00 0.00 3.36
551 552 6.645884 TTTATTATGGGTGTGGTTAGGTCT 57.354 37.500 0.00 0.00 0.00 3.85
552 553 7.706100 TTTTTATTATGGGTGTGGTTAGGTC 57.294 36.000 0.00 0.00 0.00 3.85
573 574 2.039084 AGACGGGCTCTCATCTGTTTTT 59.961 45.455 0.00 0.00 0.00 1.94
574 575 1.625818 AGACGGGCTCTCATCTGTTTT 59.374 47.619 0.00 0.00 0.00 2.43
575 576 1.270907 AGACGGGCTCTCATCTGTTT 58.729 50.000 0.00 0.00 0.00 2.83
576 577 2.145397 TAGACGGGCTCTCATCTGTT 57.855 50.000 0.00 0.00 0.00 3.16
577 578 1.959985 CATAGACGGGCTCTCATCTGT 59.040 52.381 0.00 0.00 0.00 3.41
578 579 2.234143 TCATAGACGGGCTCTCATCTG 58.766 52.381 0.00 0.00 0.00 2.90
579 580 2.666272 TCATAGACGGGCTCTCATCT 57.334 50.000 0.00 0.00 0.00 2.90
580 581 3.385577 GTTTCATAGACGGGCTCTCATC 58.614 50.000 0.00 0.00 0.00 2.92
581 582 2.103263 GGTTTCATAGACGGGCTCTCAT 59.897 50.000 0.00 0.00 0.00 2.90
582 583 1.480954 GGTTTCATAGACGGGCTCTCA 59.519 52.381 0.00 0.00 0.00 3.27
583 584 1.480954 TGGTTTCATAGACGGGCTCTC 59.519 52.381 0.00 0.00 0.00 3.20
584 585 1.207329 GTGGTTTCATAGACGGGCTCT 59.793 52.381 0.00 0.00 0.00 4.09
585 586 1.653151 GTGGTTTCATAGACGGGCTC 58.347 55.000 0.00 0.00 0.00 4.70
586 587 0.108329 CGTGGTTTCATAGACGGGCT 60.108 55.000 0.00 0.00 0.00 5.19
587 588 1.087771 CCGTGGTTTCATAGACGGGC 61.088 60.000 0.00 0.00 46.13 6.13
588 589 3.059603 CCGTGGTTTCATAGACGGG 57.940 57.895 0.00 0.00 46.13 5.28
590 591 2.165030 ACCTACCGTGGTTTCATAGACG 59.835 50.000 0.00 0.00 36.89 4.18
591 592 3.518590 CACCTACCGTGGTTTCATAGAC 58.481 50.000 0.00 0.00 38.45 2.59
592 593 3.880047 CACCTACCGTGGTTTCATAGA 57.120 47.619 0.00 0.00 38.45 1.98
786 814 0.969409 AATCCTGCTTGCTTGGCTCC 60.969 55.000 0.00 0.00 0.00 4.70
959 988 4.821589 GCTCGGGGTCAAGAGGCG 62.822 72.222 0.00 0.00 35.19 5.52
1151 1189 4.853050 AGCATCGGAGCTGCAGGC 62.853 66.667 17.12 8.35 44.66 4.85
1183 1221 0.951040 GCAGCAGAGGTACACACACC 60.951 60.000 0.00 0.00 39.02 4.16
1203 1241 0.950116 GTTTCTTCAGCAGCAGCACT 59.050 50.000 3.17 0.00 45.49 4.40
1204 1242 0.664761 TGTTTCTTCAGCAGCAGCAC 59.335 50.000 3.17 0.00 45.49 4.40
1221 1259 6.097356 CACAAGAATCAAATAGCAGCAATGT 58.903 36.000 0.00 0.00 0.00 2.71
1246 1284 1.805943 TGCTCCAATGACATGAACACG 59.194 47.619 0.00 0.00 0.00 4.49
1252 1292 2.753452 AGAAGCTTGCTCCAATGACATG 59.247 45.455 2.10 0.00 0.00 3.21
1257 1297 1.475682 GGGAAGAAGCTTGCTCCAATG 59.524 52.381 20.07 0.00 0.00 2.82
1260 1300 0.773644 AAGGGAAGAAGCTTGCTCCA 59.226 50.000 20.07 0.00 0.00 3.86
1261 1301 1.916506 AAAGGGAAGAAGCTTGCTCC 58.083 50.000 2.10 9.38 0.00 4.70
1285 1325 8.601845 AAGAAACAAAAACAAGCAAGTAAACT 57.398 26.923 0.00 0.00 0.00 2.66
1338 1388 6.370994 CCTACAGTGAGAGAGTTCGTACTTAA 59.629 42.308 0.00 0.00 33.84 1.85
1340 1390 4.696402 CCTACAGTGAGAGAGTTCGTACTT 59.304 45.833 0.00 0.00 33.84 2.24
1341 1391 4.020396 TCCTACAGTGAGAGAGTTCGTACT 60.020 45.833 0.00 0.00 37.31 2.73
1342 1392 4.252073 TCCTACAGTGAGAGAGTTCGTAC 58.748 47.826 0.00 0.00 0.00 3.67
1374 1424 1.153349 GTGCATCTTCCTCCCGGTC 60.153 63.158 0.00 0.00 0.00 4.79
1438 1488 0.694771 ATTCAGAGCCTTCCTGCACA 59.305 50.000 0.00 0.00 0.00 4.57
1475 1525 9.959775 CTTTCACGAGATTTTACACTCTATTTC 57.040 33.333 0.00 0.00 0.00 2.17
1476 1526 8.443937 GCTTTCACGAGATTTTACACTCTATTT 58.556 33.333 0.00 0.00 0.00 1.40
1525 1575 2.096248 ACTCTGCCTAGACGAAGGAAG 58.904 52.381 7.29 6.22 43.11 3.46
1528 1578 1.335496 GCTACTCTGCCTAGACGAAGG 59.665 57.143 0.00 0.00 39.87 3.46
1571 1621 1.071107 TGCGATGACGAAACACGAAAC 60.071 47.619 0.00 0.00 45.77 2.78
1572 1622 1.209998 TGCGATGACGAAACACGAAA 58.790 45.000 0.00 0.00 45.77 3.46
1574 1624 2.888218 TTGCGATGACGAAACACGA 58.112 47.368 0.00 0.00 45.77 4.35
1580 1632 1.463056 GTGGAATGTTGCGATGACGAA 59.537 47.619 0.00 0.00 42.66 3.85
1604 1656 5.219951 CGTTTTCCTCGCGAATTTAAAATGG 60.220 40.000 11.33 4.38 0.00 3.16
1665 1719 0.531532 AATCTGAGAAGATGGCCGCG 60.532 55.000 0.00 0.00 0.00 6.46
1669 1723 2.223611 CGATGCAATCTGAGAAGATGGC 59.776 50.000 7.95 7.95 42.58 4.40
1679 1733 4.224433 GTTTATCCATGCGATGCAATCTG 58.776 43.478 0.00 0.00 43.62 2.90
1689 1743 5.749596 TCTTATTGGTGTTTATCCATGCG 57.250 39.130 0.00 0.00 34.75 4.73
1714 1768 2.350895 CACGCCATTCCCACCTCA 59.649 61.111 0.00 0.00 0.00 3.86
1746 1800 2.738521 CGGTGGTTCAGCTGTCCG 60.739 66.667 14.67 15.97 0.00 4.79
1772 1826 1.599518 GACGGACATGCACCAACCA 60.600 57.895 9.64 0.00 0.00 3.67
1788 1842 2.096417 CGGTGAAGAACAATTGGACGAC 60.096 50.000 10.83 0.00 0.00 4.34
1790 1844 1.399727 GCGGTGAAGAACAATTGGACG 60.400 52.381 10.83 3.63 0.00 4.79
1853 1911 0.540133 TGTGTACCGCCTGGACTACA 60.540 55.000 0.00 0.00 39.21 2.74
1907 1965 2.357034 GCCGTCGACTGCTTGGAA 60.357 61.111 22.78 0.00 0.00 3.53
1974 2032 2.809601 CAACGGCGGAGAACTCGG 60.810 66.667 13.24 5.26 0.00 4.63
2193 2251 0.664767 GCTCCGGCGATGACATAGAC 60.665 60.000 9.30 0.00 0.00 2.59
2246 2304 1.014564 GGTAGCACAGGACGAACAGC 61.015 60.000 0.00 0.00 0.00 4.40
2344 2402 3.431725 GTTTTCAGGGGCGAGCCG 61.432 66.667 8.14 0.00 36.85 5.52
2345 2403 2.034221 AGTTTTCAGGGGCGAGCC 59.966 61.111 5.37 5.37 0.00 4.70
2366 2425 1.542915 CAGCACAGATGGAAACTTGGG 59.457 52.381 0.00 0.00 0.00 4.12
2383 2442 4.803426 AGCGAGCCACGTAGCAGC 62.803 66.667 15.87 15.87 44.60 5.25
2398 2457 5.225642 CCAATCACTTCCAAGAAAAGAAGC 58.774 41.667 0.00 0.00 42.67 3.86
2443 2502 2.701780 GCTCCGACCTCTTGAGCGA 61.702 63.158 0.00 0.00 41.74 4.93
2573 2632 1.738099 CACTCCTTGCCGGACTTCG 60.738 63.158 5.05 0.00 36.69 3.79
2610 2669 1.341209 GCCACCTTTTTCCTGAACTGG 59.659 52.381 0.00 0.00 0.00 4.00
2692 2755 7.502226 TGCCCATCATTACTAAGTTCATTAAGG 59.498 37.037 0.00 0.00 0.00 2.69
2693 2756 8.450578 TGCCCATCATTACTAAGTTCATTAAG 57.549 34.615 0.00 0.00 0.00 1.85
2694 2757 8.995027 ATGCCCATCATTACTAAGTTCATTAA 57.005 30.769 0.00 0.00 29.16 1.40
2695 2758 8.849168 CAATGCCCATCATTACTAAGTTCATTA 58.151 33.333 0.00 0.00 43.21 1.90
2696 2759 7.342799 ACAATGCCCATCATTACTAAGTTCATT 59.657 33.333 0.00 0.00 43.21 2.57
2699 2762 6.699575 ACAATGCCCATCATTACTAAGTTC 57.300 37.500 0.00 0.00 43.21 3.01
2706 2769 5.835113 AACAGTACAATGCCCATCATTAC 57.165 39.130 0.00 0.00 43.21 1.89
2711 2774 4.009675 TCTGAAACAGTACAATGCCCATC 58.990 43.478 0.00 0.00 32.61 3.51
2723 2786 4.718961 ACAGGCTTGTTATCTGAAACAGT 58.281 39.130 0.00 0.00 40.29 3.55
2804 2868 3.120199 CGAACACCATCATCCTTGTGAAC 60.120 47.826 0.00 0.00 33.08 3.18
2837 2901 1.301479 GTCGAAGAGGGTGCCGTTT 60.301 57.895 0.00 0.00 36.95 3.60
2846 2910 1.069823 CCATGGAGATGGTCGAAGAGG 59.930 57.143 5.56 0.00 43.98 3.69
3105 3175 0.610174 AGCAGAAGAAGACATCCGCA 59.390 50.000 0.00 0.00 0.00 5.69
3111 3181 0.241213 CGTCCGAGCAGAAGAAGACA 59.759 55.000 0.00 0.00 0.00 3.41
3201 3277 0.108377 CCATGCCGTAGCTGTACACA 60.108 55.000 0.00 0.00 40.80 3.72
3324 3400 2.593978 CTCAGGCCAGGGTCCATG 59.406 66.667 5.01 0.00 0.00 3.66
3580 3681 5.717078 TCAACTGTTGGTATACGAACTCT 57.283 39.130 25.15 11.76 35.89 3.24
3590 3692 3.249799 CACTGCGATTTCAACTGTTGGTA 59.750 43.478 19.55 8.96 0.00 3.25
3593 3695 3.038017 CACACTGCGATTTCAACTGTTG 58.962 45.455 14.24 14.24 0.00 3.33
3634 3736 3.565482 ACAAGCACACCTTTGTCACTATG 59.435 43.478 0.00 0.00 31.66 2.23
3636 3738 3.275617 ACAAGCACACCTTTGTCACTA 57.724 42.857 0.00 0.00 31.66 2.74
3643 3745 3.317993 AGCGAAAATACAAGCACACCTTT 59.682 39.130 0.00 0.00 0.00 3.11
3653 3755 5.407387 GGTCTGTAGTGAAGCGAAAATACAA 59.593 40.000 0.00 0.00 0.00 2.41
3672 3774 4.336889 TCTGGACAAACTACAAGGTCTG 57.663 45.455 0.00 0.00 0.00 3.51
3727 3839 1.154150 GCATGGTGTTTCTGCGAGC 60.154 57.895 0.00 0.00 0.00 5.03
3734 3846 3.141398 TGTCTCTTCTGCATGGTGTTTC 58.859 45.455 0.00 0.00 0.00 2.78
3735 3847 3.213206 TGTCTCTTCTGCATGGTGTTT 57.787 42.857 0.00 0.00 0.00 2.83
3742 3854 2.907634 CTGCTGATGTCTCTTCTGCAT 58.092 47.619 13.86 0.00 43.92 3.96
3775 3979 2.397777 TTGTGTTGCGTACTTGCATG 57.602 45.000 0.00 0.00 45.78 4.06
3841 4045 1.752694 CGGCAGTGGGGTTTATGGG 60.753 63.158 0.00 0.00 0.00 4.00
3979 4183 1.478916 CAAACTCCGTTTGGGTTTGGT 59.521 47.619 9.30 0.00 46.10 3.67
3980 4184 2.217429 CAAACTCCGTTTGGGTTTGG 57.783 50.000 9.30 0.00 46.10 3.28
3994 4198 0.108424 TTTTGTTGCTGCGCCAAACT 60.108 45.000 4.18 0.00 0.00 2.66
3997 4201 1.520342 GGTTTTGTTGCTGCGCCAA 60.520 52.632 4.18 0.00 0.00 4.52
4062 4266 4.691216 GGGATGATAAACCAAGCGATAGTC 59.309 45.833 0.00 0.00 39.35 2.59
4142 4346 1.070289 ACCTCTTCCACGTTGAGTTCC 59.930 52.381 0.00 0.00 0.00 3.62
4248 4460 2.414161 GCATGCGTTTACTTTCAGGGAC 60.414 50.000 0.00 0.00 0.00 4.46
4333 4547 2.941720 GCAGGTCCATGTCATTTCTCTC 59.058 50.000 0.00 0.00 0.00 3.20
4395 4609 6.456003 TCAGCTGATGATACCTTATGCAGGA 61.456 44.000 13.74 0.00 37.74 3.86
4428 4642 3.412386 CATACTACAGGGCATAAAGGGC 58.588 50.000 0.00 0.00 0.00 5.19
4458 4672 1.202651 AGACGGGGAATATTTGAGGCG 60.203 52.381 0.00 0.00 0.00 5.52
4578 4792 4.437930 GCCATCGGTGAGAATTTTGAGAAG 60.438 45.833 0.00 0.00 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.