Multiple sequence alignment - TraesCS1A01G217700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G217700 chr1A 100.000 3194 0 0 1 3194 385659663 385662856 0.000000e+00 5899.0
1 TraesCS1A01G217700 chr1A 100.000 300 0 0 3376 3675 385663038 385663337 4.150000e-154 555.0
2 TraesCS1A01G217700 chr1A 82.143 140 19 6 2274 2409 8289990 8290127 8.340000e-22 115.0
3 TraesCS1A01G217700 chr1B 91.190 2327 172 16 809 3115 414806036 414808349 0.000000e+00 3131.0
4 TraesCS1A01G217700 chr1B 92.486 692 35 10 1 683 414801470 414802153 0.000000e+00 974.0
5 TraesCS1A01G217700 chr1B 78.547 592 118 8 2089 2676 8914781 8914195 7.450000e-102 381.0
6 TraesCS1A01G217700 chr1B 77.740 593 121 10 2089 2676 9264223 9264809 1.620000e-93 353.0
7 TraesCS1A01G217700 chr1B 79.008 262 53 2 1433 1693 9269893 9270153 1.050000e-40 178.0
8 TraesCS1A01G217700 chr1B 95.349 86 3 1 710 795 414805965 414806049 6.400000e-28 135.0
9 TraesCS1A01G217700 chr1D 92.352 1229 70 11 809 2032 307217186 307218395 0.000000e+00 1727.0
10 TraesCS1A01G217700 chr1D 91.183 896 73 3 2038 2929 307218564 307219457 0.000000e+00 1212.0
11 TraesCS1A01G217700 chr1D 92.374 695 29 9 1 683 307216080 307216762 0.000000e+00 968.0
12 TraesCS1A01G217700 chr1D 92.308 104 5 2 692 795 307217099 307217199 1.060000e-30 145.0
13 TraesCS1A01G217700 chr2B 81.387 274 51 0 1433 1706 18178494 18178221 1.330000e-54 224.0
14 TraesCS1A01G217700 chr2A 81.887 265 48 0 1435 1699 12287807 12288071 1.330000e-54 224.0
15 TraesCS1A01G217700 chr2D 81.509 265 49 0 1435 1699 11774774 11775038 6.180000e-53 219.0
16 TraesCS1A01G217700 chr7B 80.000 265 53 0 1435 1699 89542868 89542604 2.900000e-46 196.0
17 TraesCS1A01G217700 chr7B 88.235 85 6 3 2100 2182 557059953 557060035 8.400000e-17 99.0
18 TraesCS1A01G217700 chr7D 78.947 266 54 2 1435 1699 127682968 127682704 2.920000e-41 180.0
19 TraesCS1A01G217700 chr7D 92.857 42 3 0 1028 1069 127753591 127753550 1.100000e-05 62.1
20 TraesCS1A01G217700 chr7D 94.737 38 2 0 1028 1065 127766105 127766068 3.960000e-05 60.2
21 TraesCS1A01G217700 chr4B 78.776 245 52 0 1461 1705 36763323 36763079 8.160000e-37 165.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G217700 chr1A 385659663 385663337 3674 False 3227.000000 5899 100.000000 1 3675 2 chr1A.!!$F2 3674
1 TraesCS1A01G217700 chr1B 414801470 414808349 6879 False 1413.333333 3131 93.008333 1 3115 3 chr1B.!!$F3 3114
2 TraesCS1A01G217700 chr1B 8914195 8914781 586 True 381.000000 381 78.547000 2089 2676 1 chr1B.!!$R1 587
3 TraesCS1A01G217700 chr1B 9264223 9264809 586 False 353.000000 353 77.740000 2089 2676 1 chr1B.!!$F1 587
4 TraesCS1A01G217700 chr1D 307216080 307219457 3377 False 1013.000000 1727 92.054250 1 2929 4 chr1D.!!$F1 2928

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
654 663 0.234106 CCGCTGCGATGTTGATCATC 59.766 55.0 25.45 0.0 46.68 2.92 F
2100 6097 0.322098 TGCATGTAGGGTTTGACGGG 60.322 55.0 0.00 0.0 0.00 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2589 6586 0.250038 ATAGTCATTGAGCGGCGCAT 60.250 50.0 35.02 19.11 0.00 4.73 R
2955 6956 0.100861 GACGTTAGCTTAGCGAGGCT 59.899 55.0 8.75 8.75 43.41 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 6.388619 ACTTGGGACTGAGGTTGTTATAAT 57.611 37.500 0.00 0.00 0.00 1.28
61 62 8.671384 TGTTATAATCAACTACCCTGCAATAC 57.329 34.615 0.00 0.00 0.00 1.89
114 118 8.201554 TGAGAAATTGACAGCAAGTATATGAC 57.798 34.615 0.00 0.00 37.45 3.06
181 185 3.893763 ATCAGCGAGACGGAGCGG 61.894 66.667 0.00 0.00 38.61 5.52
234 238 2.997897 GGAGCAGGACGAGTGGGT 60.998 66.667 0.00 0.00 0.00 4.51
280 284 2.586357 GTCGCCTTCATCCTCGCC 60.586 66.667 0.00 0.00 0.00 5.54
316 320 1.070786 GGTGTTCGCTCCCTTCACA 59.929 57.895 0.00 0.00 0.00 3.58
384 393 2.029110 GTCAAGCTGCATGCCCTTTTTA 60.029 45.455 16.68 3.37 44.23 1.52
385 394 2.833338 TCAAGCTGCATGCCCTTTTTAT 59.167 40.909 16.68 0.00 44.23 1.40
386 395 3.119029 TCAAGCTGCATGCCCTTTTTATC 60.119 43.478 16.68 0.00 44.23 1.75
396 405 2.685388 GCCCTTTTTATCTGCTCCTGAC 59.315 50.000 0.00 0.00 0.00 3.51
425 434 4.139786 TGATCAAGTGCTTTGCTTCTTCT 58.860 39.130 0.00 0.00 36.70 2.85
426 435 4.581824 TGATCAAGTGCTTTGCTTCTTCTT 59.418 37.500 0.00 0.00 36.70 2.52
427 436 4.558538 TCAAGTGCTTTGCTTCTTCTTC 57.441 40.909 0.00 0.00 36.70 2.87
630 639 4.514577 CTCGCCGCCCACCTACAG 62.515 72.222 0.00 0.00 0.00 2.74
654 663 0.234106 CCGCTGCGATGTTGATCATC 59.766 55.000 25.45 0.00 46.68 2.92
667 680 5.673514 TGTTGATCATCGATCATTTCTCCA 58.326 37.500 7.46 0.00 46.52 3.86
670 683 5.485620 TGATCATCGATCATTTCTCCATCC 58.514 41.667 0.00 0.00 43.11 3.51
671 684 4.277515 TCATCGATCATTTCTCCATCCC 57.722 45.455 0.00 0.00 0.00 3.85
674 687 4.502105 TCGATCATTTCTCCATCCCAAA 57.498 40.909 0.00 0.00 0.00 3.28
683 696 3.624777 TCTCCATCCCAAAGAAAGATGC 58.375 45.455 0.00 0.00 36.82 3.91
685 698 3.624777 TCCATCCCAAAGAAAGATGCTC 58.375 45.455 0.00 0.00 36.82 4.26
686 699 2.357009 CCATCCCAAAGAAAGATGCTCG 59.643 50.000 0.00 0.00 36.82 5.03
688 701 2.699954 TCCCAAAGAAAGATGCTCGTC 58.300 47.619 0.00 0.00 0.00 4.20
692 705 3.064545 CCAAAGAAAGATGCTCGTCCATC 59.935 47.826 9.13 9.13 41.47 3.51
695 708 3.726607 AGAAAGATGCTCGTCCATCATC 58.273 45.455 16.32 13.83 43.15 2.92
696 709 3.387374 AGAAAGATGCTCGTCCATCATCT 59.613 43.478 16.32 15.20 46.19 2.90
703 1046 1.667724 CTCGTCCATCATCTTTGCACC 59.332 52.381 0.00 0.00 0.00 5.01
711 1054 3.904800 TCATCTTTGCACCGAGGATTA 57.095 42.857 0.00 0.00 0.00 1.75
712 1055 4.422073 TCATCTTTGCACCGAGGATTAT 57.578 40.909 0.00 0.00 0.00 1.28
715 1058 6.533730 TCATCTTTGCACCGAGGATTATTAT 58.466 36.000 0.00 0.00 0.00 1.28
716 1059 7.676004 TCATCTTTGCACCGAGGATTATTATA 58.324 34.615 0.00 0.00 0.00 0.98
718 1061 5.924254 TCTTTGCACCGAGGATTATTATACG 59.076 40.000 0.00 0.00 0.00 3.06
729 4544 5.881443 AGGATTATTATACGAGGGACGAGAG 59.119 44.000 0.00 0.00 45.77 3.20
797 4612 8.045176 AGCTTTCACCTAGCTTAATTAACTTG 57.955 34.615 0.00 0.00 46.42 3.16
798 4613 7.665974 AGCTTTCACCTAGCTTAATTAACTTGT 59.334 33.333 0.00 0.00 46.42 3.16
799 4614 7.963465 GCTTTCACCTAGCTTAATTAACTTGTC 59.037 37.037 0.00 0.00 35.74 3.18
800 4615 9.220767 CTTTCACCTAGCTTAATTAACTTGTCT 57.779 33.333 0.00 0.00 0.00 3.41
927 4745 1.257743 GAGTACCTCCACAGCACTCA 58.742 55.000 0.00 0.00 36.48 3.41
940 4758 0.387878 GCACTCACTCACTCACTCGG 60.388 60.000 0.00 0.00 0.00 4.63
950 4768 2.579878 CTCACTCGGAGCCAACCTA 58.420 57.895 4.58 0.00 36.69 3.08
955 4773 0.323629 CTCGGAGCCAACCTACCAAA 59.676 55.000 0.00 0.00 0.00 3.28
1095 4920 2.270986 CCAGCCAGCACAGTTTCCC 61.271 63.158 0.00 0.00 0.00 3.97
1255 5082 4.437390 CGAGGATTACCAAATTGTCTGTGC 60.437 45.833 0.00 0.00 38.94 4.57
1259 5086 2.363306 ACCAAATTGTCTGTGCCTGA 57.637 45.000 0.00 0.00 0.00 3.86
1368 5197 7.115378 ACAAGAAAAATTCGTCAATCTTGATGC 59.885 33.333 17.35 0.00 43.93 3.91
1422 5252 2.025981 TGCAGCCTTGTTCATCCATACT 60.026 45.455 0.00 0.00 0.00 2.12
1428 5258 3.440173 CCTTGTTCATCCATACTGCGTTT 59.560 43.478 0.00 0.00 0.00 3.60
1639 5469 1.004200 GTGGAAACCCGTGGTCGAT 60.004 57.895 0.00 0.00 39.71 3.59
1713 5543 3.303495 CGCGTCTCAAACTACAGTAATGG 59.697 47.826 0.00 0.00 0.00 3.16
1718 5548 5.808030 GTCTCAAACTACAGTAATGGCTCTC 59.192 44.000 0.00 0.00 0.00 3.20
1723 5553 3.884091 ACTACAGTAATGGCTCTCCTACG 59.116 47.826 0.00 0.00 0.00 3.51
1725 5555 3.097614 ACAGTAATGGCTCTCCTACGTT 58.902 45.455 0.00 0.00 0.00 3.99
1808 5642 6.474427 TGTTCGAAAATATAGAGTTACAGCCG 59.526 38.462 0.00 0.00 0.00 5.52
1844 5678 2.419620 TCGAGCACCGACAAGCAA 59.580 55.556 0.00 0.00 43.23 3.91
1889 5723 1.440708 GTCGTCTCGAGGAGTTCTCA 58.559 55.000 13.56 0.00 42.55 3.27
1892 5726 1.828979 GTCTCGAGGAGTTCTCACCT 58.171 55.000 13.56 0.00 42.55 4.00
2006 5840 5.466819 TCACCGATACTACTTCACTTTGTG 58.533 41.667 0.00 0.00 34.45 3.33
2062 6059 2.906389 TCATACTCTGTCCAAGCAACCT 59.094 45.455 0.00 0.00 0.00 3.50
2067 6064 1.064017 TCTGTCCAAGCAACCTTTGGT 60.064 47.619 4.14 0.00 44.43 3.67
2100 6097 0.322098 TGCATGTAGGGTTTGACGGG 60.322 55.000 0.00 0.00 0.00 5.28
2209 6206 2.738147 CGAGAACCGATGTCGCTTT 58.262 52.632 0.00 0.00 38.04 3.51
2230 6227 2.646175 GCTAGAGGTGGTGGACGCA 61.646 63.158 0.00 0.00 0.00 5.24
2368 6365 5.338219 GCTCAATGACTATGGCATCCTCTAT 60.338 44.000 1.65 0.00 0.00 1.98
2440 6437 2.282462 CACCGCCTTCTGCCCTTT 60.282 61.111 0.00 0.00 36.24 3.11
2482 6479 1.046472 TCATCGCCAACGGAGGGTAT 61.046 55.000 0.00 0.00 40.63 2.73
2518 6515 2.203182 AAGGTGGTCGGTGAGGGA 59.797 61.111 0.00 0.00 0.00 4.20
2554 6551 2.035237 CTTATGGGCGGCCGTTCCTA 62.035 60.000 29.39 21.75 0.00 2.94
2589 6586 0.321671 CCAAGGAGGTTCGAGCTCAA 59.678 55.000 15.40 4.52 44.10 3.02
2618 6615 4.063689 GCTCAATGACTATGACAGGATGG 58.936 47.826 0.00 0.00 43.62 3.51
2642 6639 4.603094 TTCTATACCTCTGACCCTGTCA 57.397 45.455 0.00 0.00 40.50 3.58
2678 6675 7.488471 CCGATTATCCATTCCTCGACTAATAAC 59.512 40.741 0.00 0.00 0.00 1.89
2701 6698 0.110010 GCTTCCTGCAAAGCTCGAAC 60.110 55.000 14.55 0.00 46.51 3.95
2729 6730 6.426937 TCGAAGAAACAAAAAGGAAGATCGAT 59.573 34.615 0.00 0.00 30.52 3.59
2908 6909 3.201290 GGGCTCATAGAAGTGACACATG 58.799 50.000 8.59 2.90 0.00 3.21
2920 6921 3.439129 AGTGACACATGATGCATGAGTTG 59.561 43.478 2.46 0.00 43.42 3.16
2937 6938 5.945155 TGAGTTGAAACTTGTTTACACACC 58.055 37.500 0.00 0.00 39.88 4.16
2941 6942 3.623960 TGAAACTTGTTTACACACCGGAG 59.376 43.478 9.46 1.26 30.32 4.63
2961 6962 1.216710 GACAAGGTCTCCAGCCTCG 59.783 63.158 0.00 0.00 34.81 4.63
2962 6963 2.125350 CAAGGTCTCCAGCCTCGC 60.125 66.667 0.00 0.00 34.81 5.03
2963 6964 2.284258 AAGGTCTCCAGCCTCGCT 60.284 61.111 0.00 0.00 40.77 4.93
2964 6965 1.000486 AAGGTCTCCAGCCTCGCTA 60.000 57.895 0.00 0.00 36.40 4.26
2965 6966 0.614979 AAGGTCTCCAGCCTCGCTAA 60.615 55.000 0.00 0.00 36.40 3.09
2987 6988 2.413837 CTAACGTCCTTGTGGAGTTGG 58.586 52.381 0.00 0.00 44.16 3.77
2996 6997 4.104738 TCCTTGTGGAGTTGGAGAGATTTT 59.895 41.667 0.00 0.00 37.46 1.82
3003 7004 7.559897 TGTGGAGTTGGAGAGATTTTTAAAAGT 59.440 33.333 0.14 0.00 0.00 2.66
3034 7035 5.657470 TCATTGTTTTCTCAAGAGTGACG 57.343 39.130 0.00 0.00 0.00 4.35
3038 7039 4.112634 TGTTTTCTCAAGAGTGACGACAG 58.887 43.478 0.00 0.00 0.00 3.51
3076 7077 8.524870 TTTCATGACGAAACTACTTACCTAAC 57.475 34.615 0.00 0.00 38.72 2.34
3089 7090 8.033626 ACTACTTACCTAACTGCTAAATGTGAC 58.966 37.037 0.00 0.00 0.00 3.67
3101 7102 4.566759 GCTAAATGTGACGTGAGCATCTAA 59.433 41.667 0.00 0.00 34.92 2.10
3115 7116 4.319177 AGCATCTAACTGGAACTGTGTTC 58.681 43.478 2.16 2.16 41.30 3.18
3116 7117 4.040952 AGCATCTAACTGGAACTGTGTTCT 59.959 41.667 9.81 0.00 41.30 3.01
3117 7118 4.153117 GCATCTAACTGGAACTGTGTTCTG 59.847 45.833 9.81 6.47 41.30 3.02
3118 7119 3.728845 TCTAACTGGAACTGTGTTCTGC 58.271 45.455 9.81 0.00 41.30 4.26
3119 7120 2.717639 AACTGGAACTGTGTTCTGCT 57.282 45.000 9.81 0.00 41.30 4.24
3120 7121 3.838244 AACTGGAACTGTGTTCTGCTA 57.162 42.857 9.81 0.00 41.30 3.49
3121 7122 4.357918 AACTGGAACTGTGTTCTGCTAT 57.642 40.909 9.81 0.00 41.30 2.97
3122 7123 5.483685 AACTGGAACTGTGTTCTGCTATA 57.516 39.130 9.81 0.00 41.30 1.31
3123 7124 5.078411 ACTGGAACTGTGTTCTGCTATAG 57.922 43.478 9.81 0.00 39.59 1.31
3124 7125 4.528596 ACTGGAACTGTGTTCTGCTATAGT 59.471 41.667 9.81 3.97 39.59 2.12
3125 7126 4.820897 TGGAACTGTGTTCTGCTATAGTG 58.179 43.478 9.81 0.00 0.00 2.74
3126 7127 4.526650 TGGAACTGTGTTCTGCTATAGTGA 59.473 41.667 9.81 0.00 0.00 3.41
3127 7128 4.865365 GGAACTGTGTTCTGCTATAGTGAC 59.135 45.833 9.81 0.00 0.00 3.67
3128 7129 5.468540 AACTGTGTTCTGCTATAGTGACA 57.531 39.130 0.84 0.00 0.00 3.58
3129 7130 5.065704 ACTGTGTTCTGCTATAGTGACAG 57.934 43.478 0.84 0.00 35.73 3.51
3130 7131 4.524714 ACTGTGTTCTGCTATAGTGACAGT 59.475 41.667 0.84 0.00 36.87 3.55
3131 7132 5.011125 ACTGTGTTCTGCTATAGTGACAGTT 59.989 40.000 0.84 0.00 37.63 3.16
3132 7133 5.230182 TGTGTTCTGCTATAGTGACAGTTG 58.770 41.667 0.84 0.00 33.12 3.16
3133 7134 5.010617 TGTGTTCTGCTATAGTGACAGTTGA 59.989 40.000 0.84 0.00 33.12 3.18
3134 7135 6.102663 GTGTTCTGCTATAGTGACAGTTGAT 58.897 40.000 0.84 0.00 33.12 2.57
3135 7136 6.591834 GTGTTCTGCTATAGTGACAGTTGATT 59.408 38.462 0.84 0.00 33.12 2.57
3136 7137 7.759886 GTGTTCTGCTATAGTGACAGTTGATTA 59.240 37.037 0.84 0.00 33.12 1.75
3137 7138 7.759886 TGTTCTGCTATAGTGACAGTTGATTAC 59.240 37.037 0.84 0.00 33.12 1.89
3138 7139 7.646548 TCTGCTATAGTGACAGTTGATTACT 57.353 36.000 0.84 0.00 37.68 2.24
3139 7140 8.067751 TCTGCTATAGTGACAGTTGATTACTT 57.932 34.615 0.84 0.00 33.85 2.24
3140 7141 8.191446 TCTGCTATAGTGACAGTTGATTACTTC 58.809 37.037 0.84 0.00 33.85 3.01
3141 7142 8.067751 TGCTATAGTGACAGTTGATTACTTCT 57.932 34.615 0.84 0.00 33.85 2.85
3142 7143 9.185680 TGCTATAGTGACAGTTGATTACTTCTA 57.814 33.333 0.84 0.00 33.85 2.10
3148 7149 7.976734 AGTGACAGTTGATTACTTCTATAGTGC 59.023 37.037 0.00 0.00 37.73 4.40
3149 7150 7.222999 GTGACAGTTGATTACTTCTATAGTGCC 59.777 40.741 0.00 0.00 37.73 5.01
3150 7151 7.093509 TGACAGTTGATTACTTCTATAGTGCCA 60.094 37.037 0.00 0.00 37.73 4.92
3151 7152 7.620880 ACAGTTGATTACTTCTATAGTGCCAA 58.379 34.615 0.00 0.00 37.73 4.52
3152 7153 8.267894 ACAGTTGATTACTTCTATAGTGCCAAT 58.732 33.333 0.00 0.00 37.73 3.16
3153 7154 9.764363 CAGTTGATTACTTCTATAGTGCCAATA 57.236 33.333 0.00 0.00 37.73 1.90
3162 7163 8.532819 ACTTCTATAGTGCCAATATTAGGTAGC 58.467 37.037 0.00 0.00 35.19 3.58
3163 7164 8.430573 TTCTATAGTGCCAATATTAGGTAGCA 57.569 34.615 0.00 0.00 0.00 3.49
3166 7167 3.146847 GTGCCAATATTAGGTAGCACCC 58.853 50.000 12.25 0.00 43.63 4.61
3167 7168 2.780592 TGCCAATATTAGGTAGCACCCA 59.219 45.455 0.00 0.00 39.75 4.51
3168 7169 3.146847 GCCAATATTAGGTAGCACCCAC 58.853 50.000 0.00 0.00 39.75 4.61
3169 7170 3.181443 GCCAATATTAGGTAGCACCCACT 60.181 47.826 0.00 0.00 39.75 4.00
3170 7171 4.688874 GCCAATATTAGGTAGCACCCACTT 60.689 45.833 0.00 0.00 39.75 3.16
3171 7172 5.445964 CCAATATTAGGTAGCACCCACTTT 58.554 41.667 0.00 0.00 39.75 2.66
3172 7173 5.891551 CCAATATTAGGTAGCACCCACTTTT 59.108 40.000 0.00 0.00 39.75 2.27
3173 7174 6.379988 CCAATATTAGGTAGCACCCACTTTTT 59.620 38.462 0.00 0.00 39.75 1.94
3174 7175 7.558444 CCAATATTAGGTAGCACCCACTTTTTA 59.442 37.037 0.00 0.00 39.75 1.52
3175 7176 9.131791 CAATATTAGGTAGCACCCACTTTTTAT 57.868 33.333 0.00 0.00 39.75 1.40
3176 7177 9.709387 AATATTAGGTAGCACCCACTTTTTATT 57.291 29.630 0.00 0.00 39.75 1.40
3177 7178 9.709387 ATATTAGGTAGCACCCACTTTTTATTT 57.291 29.630 0.00 0.00 39.75 1.40
3179 7180 8.937207 TTAGGTAGCACCCACTTTTTATTTAA 57.063 30.769 0.00 0.00 39.75 1.52
3180 7181 7.842887 AGGTAGCACCCACTTTTTATTTAAA 57.157 32.000 0.00 0.00 39.75 1.52
3181 7182 8.252624 AGGTAGCACCCACTTTTTATTTAAAA 57.747 30.769 0.00 0.00 39.75 1.52
3182 7183 8.706521 AGGTAGCACCCACTTTTTATTTAAAAA 58.293 29.630 7.73 7.73 39.75 1.94
3183 7184 9.496873 GGTAGCACCCACTTTTTATTTAAAAAT 57.503 29.630 8.29 0.00 37.14 1.82
3186 7187 9.271828 AGCACCCACTTTTTATTTAAAAATGAG 57.728 29.630 8.29 1.56 42.30 2.90
3187 7188 8.015087 GCACCCACTTTTTATTTAAAAATGAGC 58.985 33.333 8.29 9.38 42.30 4.26
3188 7189 9.271828 CACCCACTTTTTATTTAAAAATGAGCT 57.728 29.630 8.29 0.00 42.30 4.09
3189 7190 9.271828 ACCCACTTTTTATTTAAAAATGAGCTG 57.728 29.630 8.29 0.67 42.30 4.24
3190 7191 8.720562 CCCACTTTTTATTTAAAAATGAGCTGG 58.279 33.333 8.29 8.13 42.30 4.85
3191 7192 8.229811 CCACTTTTTATTTAAAAATGAGCTGGC 58.770 33.333 8.29 0.00 42.30 4.85
3192 7193 8.992073 CACTTTTTATTTAAAAATGAGCTGGCT 58.008 29.630 8.29 0.00 42.30 4.75
3193 7194 8.992073 ACTTTTTATTTAAAAATGAGCTGGCTG 58.008 29.630 0.00 0.00 42.30 4.85
3401 7402 9.632807 CCAATATTCAACGAAAACTTTATGGAA 57.367 29.630 0.00 0.00 0.00 3.53
3404 7405 7.940178 ATTCAACGAAAACTTTATGGAAACC 57.060 32.000 0.00 0.00 0.00 3.27
3405 7406 6.452494 TCAACGAAAACTTTATGGAAACCA 57.548 33.333 0.00 0.00 38.19 3.67
3406 7407 7.045126 TCAACGAAAACTTTATGGAAACCAT 57.955 32.000 8.35 8.35 46.99 3.55
3407 7408 8.167605 TCAACGAAAACTTTATGGAAACCATA 57.832 30.769 6.42 6.42 43.19 2.74
3408 7409 8.798402 TCAACGAAAACTTTATGGAAACCATAT 58.202 29.630 10.66 0.00 44.71 1.78
3409 7410 9.418045 CAACGAAAACTTTATGGAAACCATATT 57.582 29.630 10.66 3.11 44.71 1.28
3410 7411 9.990360 AACGAAAACTTTATGGAAACCATATTT 57.010 25.926 10.66 8.46 44.71 1.40
3411 7412 9.990360 ACGAAAACTTTATGGAAACCATATTTT 57.010 25.926 14.77 14.77 44.71 1.82
3455 7456 9.122779 TGTACAAAATACGGGATATTAAAAGGG 57.877 33.333 0.00 0.00 32.86 3.95
3456 7457 9.123902 GTACAAAATACGGGATATTAAAAGGGT 57.876 33.333 0.00 0.00 32.86 4.34
3457 7458 8.002984 ACAAAATACGGGATATTAAAAGGGTG 57.997 34.615 0.00 0.00 32.86 4.61
3458 7459 7.835181 ACAAAATACGGGATATTAAAAGGGTGA 59.165 33.333 0.00 0.00 32.86 4.02
3459 7460 8.856103 CAAAATACGGGATATTAAAAGGGTGAT 58.144 33.333 0.00 0.00 32.86 3.06
3460 7461 7.996098 AATACGGGATATTAAAAGGGTGATG 57.004 36.000 0.00 0.00 31.28 3.07
3461 7462 5.382664 ACGGGATATTAAAAGGGTGATGT 57.617 39.130 0.00 0.00 0.00 3.06
3462 7463 5.762279 ACGGGATATTAAAAGGGTGATGTT 58.238 37.500 0.00 0.00 0.00 2.71
3463 7464 6.192044 ACGGGATATTAAAAGGGTGATGTTT 58.808 36.000 0.00 0.00 0.00 2.83
3464 7465 6.666113 ACGGGATATTAAAAGGGTGATGTTTT 59.334 34.615 0.00 0.00 0.00 2.43
3465 7466 7.835181 ACGGGATATTAAAAGGGTGATGTTTTA 59.165 33.333 0.00 0.00 0.00 1.52
3466 7467 8.856103 CGGGATATTAAAAGGGTGATGTTTTAT 58.144 33.333 0.00 0.00 30.27 1.40
3470 7471 9.830975 ATATTAAAAGGGTGATGTTTTATTGCC 57.169 29.630 0.00 0.00 30.27 4.52
3471 7472 5.559148 AAAAGGGTGATGTTTTATTGCCA 57.441 34.783 0.00 0.00 0.00 4.92
3472 7473 4.535526 AAGGGTGATGTTTTATTGCCAC 57.464 40.909 0.00 0.00 0.00 5.01
3473 7474 3.505386 AGGGTGATGTTTTATTGCCACA 58.495 40.909 0.00 0.00 0.00 4.17
3474 7475 3.258123 AGGGTGATGTTTTATTGCCACAC 59.742 43.478 0.00 0.00 0.00 3.82
3475 7476 3.006323 GGGTGATGTTTTATTGCCACACA 59.994 43.478 0.00 0.00 0.00 3.72
3476 7477 4.322650 GGGTGATGTTTTATTGCCACACAT 60.323 41.667 0.00 0.00 0.00 3.21
3477 7478 5.105554 GGGTGATGTTTTATTGCCACACATA 60.106 40.000 0.00 0.00 0.00 2.29
3478 7479 6.035843 GGTGATGTTTTATTGCCACACATAG 58.964 40.000 0.00 0.00 0.00 2.23
3479 7480 6.035843 GTGATGTTTTATTGCCACACATAGG 58.964 40.000 0.00 0.00 0.00 2.57
3480 7481 5.714333 TGATGTTTTATTGCCACACATAGGT 59.286 36.000 0.00 0.00 0.00 3.08
3481 7482 6.887002 TGATGTTTTATTGCCACACATAGGTA 59.113 34.615 0.00 0.00 0.00 3.08
3482 7483 7.394641 TGATGTTTTATTGCCACACATAGGTAA 59.605 33.333 0.00 0.00 35.21 2.85
3483 7484 7.710676 TGTTTTATTGCCACACATAGGTAAT 57.289 32.000 0.00 0.00 42.81 1.89
3484 7485 7.767261 TGTTTTATTGCCACACATAGGTAATC 58.233 34.615 0.00 0.00 40.07 1.75
3485 7486 7.394641 TGTTTTATTGCCACACATAGGTAATCA 59.605 33.333 0.00 0.00 40.07 2.57
3486 7487 8.413229 GTTTTATTGCCACACATAGGTAATCAT 58.587 33.333 0.00 0.00 40.07 2.45
3487 7488 7.744087 TTATTGCCACACATAGGTAATCATC 57.256 36.000 0.00 0.00 40.07 2.92
3488 7489 4.085357 TGCCACACATAGGTAATCATCC 57.915 45.455 0.00 0.00 0.00 3.51
3489 7490 3.716353 TGCCACACATAGGTAATCATCCT 59.284 43.478 0.00 0.00 38.91 3.24
3490 7491 4.202357 TGCCACACATAGGTAATCATCCTC 60.202 45.833 0.00 0.00 36.60 3.71
3491 7492 4.040952 GCCACACATAGGTAATCATCCTCT 59.959 45.833 0.00 0.00 36.60 3.69
3492 7493 5.455326 GCCACACATAGGTAATCATCCTCTT 60.455 44.000 0.00 0.00 36.60 2.85
3493 7494 6.239600 GCCACACATAGGTAATCATCCTCTTA 60.240 42.308 0.00 0.00 36.60 2.10
3494 7495 7.689313 GCCACACATAGGTAATCATCCTCTTAA 60.689 40.741 0.00 0.00 36.60 1.85
3495 7496 7.657761 CCACACATAGGTAATCATCCTCTTAAC 59.342 40.741 0.00 0.00 36.60 2.01
3496 7497 8.204160 CACACATAGGTAATCATCCTCTTAACA 58.796 37.037 0.00 0.00 36.60 2.41
3497 7498 8.938883 ACACATAGGTAATCATCCTCTTAACAT 58.061 33.333 0.00 0.00 36.60 2.71
3498 7499 9.429359 CACATAGGTAATCATCCTCTTAACATC 57.571 37.037 0.00 0.00 36.60 3.06
3499 7500 8.598041 ACATAGGTAATCATCCTCTTAACATCC 58.402 37.037 0.00 0.00 36.60 3.51
3500 7501 6.441088 AGGTAATCATCCTCTTAACATCCC 57.559 41.667 0.00 0.00 0.00 3.85
3501 7502 5.012148 AGGTAATCATCCTCTTAACATCCCG 59.988 44.000 0.00 0.00 0.00 5.14
3502 7503 5.221661 GGTAATCATCCTCTTAACATCCCGT 60.222 44.000 0.00 0.00 0.00 5.28
3503 7504 6.014840 GGTAATCATCCTCTTAACATCCCGTA 60.015 42.308 0.00 0.00 0.00 4.02
3504 7505 6.688073 AATCATCCTCTTAACATCCCGTAT 57.312 37.500 0.00 0.00 0.00 3.06
3505 7506 6.688073 ATCATCCTCTTAACATCCCGTATT 57.312 37.500 0.00 0.00 0.00 1.89
3506 7507 6.494666 TCATCCTCTTAACATCCCGTATTT 57.505 37.500 0.00 0.00 0.00 1.40
3507 7508 6.895782 TCATCCTCTTAACATCCCGTATTTT 58.104 36.000 0.00 0.00 0.00 1.82
3508 7509 7.343357 TCATCCTCTTAACATCCCGTATTTTT 58.657 34.615 0.00 0.00 0.00 1.94
3545 7546 9.677567 TTCGAAACTTTAATCATCCTTTTCTTG 57.322 29.630 0.00 0.00 0.00 3.02
3546 7547 8.846211 TCGAAACTTTAATCATCCTTTTCTTGT 58.154 29.630 0.00 0.00 0.00 3.16
3547 7548 8.905702 CGAAACTTTAATCATCCTTTTCTTGTG 58.094 33.333 0.00 0.00 0.00 3.33
3548 7549 9.196552 GAAACTTTAATCATCCTTTTCTTGTGG 57.803 33.333 0.00 0.00 0.00 4.17
3549 7550 7.839680 ACTTTAATCATCCTTTTCTTGTGGT 57.160 32.000 0.00 0.00 0.00 4.16
3550 7551 8.250143 ACTTTAATCATCCTTTTCTTGTGGTT 57.750 30.769 0.00 0.00 0.00 3.67
3551 7552 8.704668 ACTTTAATCATCCTTTTCTTGTGGTTT 58.295 29.630 0.00 0.00 0.00 3.27
3552 7553 9.546428 CTTTAATCATCCTTTTCTTGTGGTTTT 57.454 29.630 0.00 0.00 0.00 2.43
3553 7554 9.541143 TTTAATCATCCTTTTCTTGTGGTTTTC 57.459 29.630 0.00 0.00 0.00 2.29
3554 7555 6.729690 ATCATCCTTTTCTTGTGGTTTTCA 57.270 33.333 0.00 0.00 0.00 2.69
3555 7556 6.537453 TCATCCTTTTCTTGTGGTTTTCAA 57.463 33.333 0.00 0.00 0.00 2.69
3556 7557 7.123355 TCATCCTTTTCTTGTGGTTTTCAAT 57.877 32.000 0.00 0.00 0.00 2.57
3557 7558 6.985645 TCATCCTTTTCTTGTGGTTTTCAATG 59.014 34.615 0.00 0.00 0.00 2.82
3558 7559 5.669477 TCCTTTTCTTGTGGTTTTCAATGG 58.331 37.500 0.00 0.00 0.00 3.16
3559 7560 5.188751 TCCTTTTCTTGTGGTTTTCAATGGT 59.811 36.000 0.00 0.00 0.00 3.55
3560 7561 5.879777 CCTTTTCTTGTGGTTTTCAATGGTT 59.120 36.000 0.00 0.00 0.00 3.67
3561 7562 6.374053 CCTTTTCTTGTGGTTTTCAATGGTTT 59.626 34.615 0.00 0.00 0.00 3.27
3562 7563 7.094420 CCTTTTCTTGTGGTTTTCAATGGTTTT 60.094 33.333 0.00 0.00 0.00 2.43
3563 7564 6.976636 TTCTTGTGGTTTTCAATGGTTTTC 57.023 33.333 0.00 0.00 0.00 2.29
3564 7565 6.042638 TCTTGTGGTTTTCAATGGTTTTCA 57.957 33.333 0.00 0.00 0.00 2.69
3565 7566 5.872070 TCTTGTGGTTTTCAATGGTTTTCAC 59.128 36.000 0.00 0.00 0.00 3.18
3566 7567 4.508662 TGTGGTTTTCAATGGTTTTCACC 58.491 39.130 0.00 0.00 44.56 4.02
3576 7577 1.778334 GGTTTTCACCGAATGTTGGC 58.222 50.000 0.00 0.00 31.60 4.52
3577 7578 1.339929 GGTTTTCACCGAATGTTGGCT 59.660 47.619 0.00 0.00 31.60 4.75
3578 7579 2.223947 GGTTTTCACCGAATGTTGGCTT 60.224 45.455 0.00 0.00 31.60 4.35
3579 7580 3.049912 GTTTTCACCGAATGTTGGCTTC 58.950 45.455 0.00 0.00 0.00 3.86
3580 7581 1.243902 TTCACCGAATGTTGGCTTCC 58.756 50.000 0.00 0.00 0.00 3.46
3581 7582 0.953471 TCACCGAATGTTGGCTTCCG 60.953 55.000 0.00 0.00 0.00 4.30
3582 7583 2.332654 ACCGAATGTTGGCTTCCGC 61.333 57.895 0.00 0.00 0.00 5.54
3583 7584 2.331893 CCGAATGTTGGCTTCCGCA 61.332 57.895 0.00 0.00 38.10 5.69
3584 7585 1.656818 CCGAATGTTGGCTTCCGCAT 61.657 55.000 0.00 0.00 38.10 4.73
3585 7586 0.523968 CGAATGTTGGCTTCCGCATG 60.524 55.000 0.00 0.00 38.10 4.06
3586 7587 0.810648 GAATGTTGGCTTCCGCATGA 59.189 50.000 0.00 0.00 38.10 3.07
3587 7588 0.527565 AATGTTGGCTTCCGCATGAC 59.472 50.000 0.00 0.00 38.10 3.06
3588 7589 0.608856 ATGTTGGCTTCCGCATGACA 60.609 50.000 0.00 0.00 38.10 3.58
3589 7590 0.608856 TGTTGGCTTCCGCATGACAT 60.609 50.000 0.00 0.00 38.10 3.06
3590 7591 0.527565 GTTGGCTTCCGCATGACATT 59.472 50.000 0.00 0.00 38.10 2.71
3591 7592 0.810648 TTGGCTTCCGCATGACATTC 59.189 50.000 0.00 0.00 38.10 2.67
3592 7593 0.035152 TGGCTTCCGCATGACATTCT 60.035 50.000 0.00 0.00 38.10 2.40
3593 7594 0.659957 GGCTTCCGCATGACATTCTC 59.340 55.000 0.00 0.00 38.10 2.87
3594 7595 0.659957 GCTTCCGCATGACATTCTCC 59.340 55.000 0.00 0.00 35.78 3.71
3595 7596 1.303309 CTTCCGCATGACATTCTCCC 58.697 55.000 0.00 0.00 0.00 4.30
3596 7597 0.461870 TTCCGCATGACATTCTCCCG 60.462 55.000 0.00 0.00 0.00 5.14
3597 7598 1.143838 CCGCATGACATTCTCCCGA 59.856 57.895 0.00 0.00 0.00 5.14
3598 7599 0.877649 CCGCATGACATTCTCCCGAG 60.878 60.000 0.00 0.00 0.00 4.63
3599 7600 0.877649 CGCATGACATTCTCCCGAGG 60.878 60.000 0.00 0.00 0.00 4.63
3600 7601 0.465705 GCATGACATTCTCCCGAGGA 59.534 55.000 0.00 0.00 0.00 3.71
3601 7602 1.071385 GCATGACATTCTCCCGAGGAT 59.929 52.381 0.00 0.00 0.00 3.24
3603 7604 1.123077 TGACATTCTCCCGAGGATGG 58.877 55.000 15.83 0.79 46.44 3.51
3604 7605 1.123928 GACATTCTCCCGAGGATGGT 58.876 55.000 15.83 3.58 46.44 3.55
3605 7606 2.317040 GACATTCTCCCGAGGATGGTA 58.683 52.381 15.83 0.00 46.44 3.25
3606 7607 2.036089 GACATTCTCCCGAGGATGGTAC 59.964 54.545 15.83 5.11 46.44 3.34
3607 7608 2.625883 ACATTCTCCCGAGGATGGTACA 60.626 50.000 15.83 0.00 46.44 2.90
3608 7609 4.756450 ACATTCTCCCGAGGATGGTACAC 61.756 52.174 15.83 0.00 46.44 2.90
3609 7610 6.960575 ACATTCTCCCGAGGATGGTACACT 62.961 50.000 15.83 0.00 46.44 3.55
3610 7611 7.637353 ACATTCTCCCGAGGATGGTACACTA 62.637 48.000 15.83 0.00 46.44 2.74
3626 7627 8.774890 TGGTACACTAGCACGAAAAATAATAA 57.225 30.769 0.00 0.00 0.00 1.40
3627 7628 9.386010 TGGTACACTAGCACGAAAAATAATAAT 57.614 29.630 0.00 0.00 0.00 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 0.671781 CCTCAGTCCCAAGTCGCTTG 60.672 60.000 11.23 11.23 40.75 4.01
44 45 5.414454 GTGAAATGTATTGCAGGGTAGTTGA 59.586 40.000 0.00 0.00 0.00 3.18
61 62 7.337689 TCCTCTGTTCCAATATGAAGTGAAATG 59.662 37.037 0.00 0.00 0.00 2.32
181 185 1.212751 GTTGAAAGACATGCCCCGC 59.787 57.895 0.00 0.00 0.00 6.13
234 238 1.372499 GACTTGCCGTCGCTGTACA 60.372 57.895 0.00 0.00 35.36 2.90
280 284 3.202001 CCGGCCGCCTTGTACATG 61.202 66.667 22.85 0.00 0.00 3.21
316 320 0.972983 CCGTGACCTGGATGGACTCT 60.973 60.000 0.00 0.00 39.71 3.24
373 382 3.053395 TCAGGAGCAGATAAAAAGGGCAT 60.053 43.478 0.00 0.00 0.00 4.40
384 393 2.430610 GCCGAGGTCAGGAGCAGAT 61.431 63.158 0.97 0.00 0.00 2.90
385 394 3.071206 GCCGAGGTCAGGAGCAGA 61.071 66.667 0.97 0.00 0.00 4.26
386 395 3.073735 AGCCGAGGTCAGGAGCAG 61.074 66.667 0.97 0.00 0.00 4.24
396 405 0.392193 AAGCACTTGATCAGCCGAGG 60.392 55.000 0.00 0.00 0.00 4.63
453 462 0.030101 GTCCTCGAAGATCCTCAGCG 59.970 60.000 0.00 0.00 33.89 5.18
654 663 4.454678 TCTTTGGGATGGAGAAATGATCG 58.545 43.478 0.00 0.00 0.00 3.69
662 675 3.267812 AGCATCTTTCTTTGGGATGGAGA 59.732 43.478 0.00 0.00 37.78 3.71
663 676 3.629087 AGCATCTTTCTTTGGGATGGAG 58.371 45.455 0.00 0.00 37.78 3.86
667 680 3.274288 GACGAGCATCTTTCTTTGGGAT 58.726 45.455 0.00 0.00 0.00 3.85
670 683 2.426522 TGGACGAGCATCTTTCTTTGG 58.573 47.619 0.00 0.00 0.00 3.28
671 684 3.686241 TGATGGACGAGCATCTTTCTTTG 59.314 43.478 0.00 0.00 0.00 2.77
674 687 3.726607 GATGATGGACGAGCATCTTTCT 58.273 45.455 8.29 0.00 43.11 2.52
683 696 1.667724 GGTGCAAAGATGATGGACGAG 59.332 52.381 0.00 0.00 39.71 4.18
685 698 0.374758 CGGTGCAAAGATGATGGACG 59.625 55.000 0.00 0.00 39.71 4.79
686 699 1.667724 CTCGGTGCAAAGATGATGGAC 59.332 52.381 0.00 0.00 38.28 4.02
688 701 1.019673 CCTCGGTGCAAAGATGATGG 58.980 55.000 0.00 0.00 0.00 3.51
692 705 6.808008 ATAATAATCCTCGGTGCAAAGATG 57.192 37.500 0.00 0.00 0.00 2.90
695 708 5.924254 TCGTATAATAATCCTCGGTGCAAAG 59.076 40.000 0.00 0.00 0.00 2.77
696 709 5.845103 TCGTATAATAATCCTCGGTGCAAA 58.155 37.500 0.00 0.00 0.00 3.68
703 1046 4.633126 TCGTCCCTCGTATAATAATCCTCG 59.367 45.833 0.00 0.00 40.80 4.63
711 1054 5.008811 CACTTTCTCTCGTCCCTCGTATAAT 59.991 44.000 0.00 0.00 40.80 1.28
712 1055 4.334759 CACTTTCTCTCGTCCCTCGTATAA 59.665 45.833 0.00 0.00 40.80 0.98
715 1058 2.082231 CACTTTCTCTCGTCCCTCGTA 58.918 52.381 0.00 0.00 40.80 3.43
716 1059 0.882474 CACTTTCTCTCGTCCCTCGT 59.118 55.000 0.00 0.00 40.80 4.18
718 1061 0.456995 CGCACTTTCTCTCGTCCCTC 60.457 60.000 0.00 0.00 0.00 4.30
729 4544 4.753541 GCTGCTAAGCGCACTTTC 57.246 55.556 11.47 0.00 45.47 2.62
803 4618 7.363181 GGCCGGGTGTTAATTAAGATAGTTTTT 60.363 37.037 2.18 0.00 0.00 1.94
804 4619 6.095860 GGCCGGGTGTTAATTAAGATAGTTTT 59.904 38.462 2.18 0.00 0.00 2.43
805 4620 5.591472 GGCCGGGTGTTAATTAAGATAGTTT 59.409 40.000 2.18 0.00 0.00 2.66
806 4621 5.128205 GGCCGGGTGTTAATTAAGATAGTT 58.872 41.667 2.18 0.00 0.00 2.24
807 4622 4.711399 GGCCGGGTGTTAATTAAGATAGT 58.289 43.478 2.18 0.00 0.00 2.12
808 4623 3.744426 CGGCCGGGTGTTAATTAAGATAG 59.256 47.826 20.10 0.00 0.00 2.08
809 4624 3.494749 CCGGCCGGGTGTTAATTAAGATA 60.495 47.826 37.42 0.00 0.00 1.98
810 4625 2.567985 CGGCCGGGTGTTAATTAAGAT 58.432 47.619 20.10 0.00 0.00 2.40
811 4626 1.407162 CCGGCCGGGTGTTAATTAAGA 60.407 52.381 37.42 0.00 0.00 2.10
812 4627 1.018910 CCGGCCGGGTGTTAATTAAG 58.981 55.000 37.42 5.42 0.00 1.85
813 4628 3.171949 CCGGCCGGGTGTTAATTAA 57.828 52.632 37.42 0.00 0.00 1.40
814 4629 4.959399 CCGGCCGGGTGTTAATTA 57.041 55.556 37.42 0.00 0.00 1.40
927 4745 0.827925 TTGGCTCCGAGTGAGTGAGT 60.828 55.000 0.00 0.00 43.48 3.41
940 4758 1.607148 GTGTGTTTGGTAGGTTGGCTC 59.393 52.381 0.00 0.00 0.00 4.70
942 4760 1.394618 TGTGTGTTTGGTAGGTTGGC 58.605 50.000 0.00 0.00 0.00 4.52
950 4768 3.206150 GAGTGAGTGATGTGTGTTTGGT 58.794 45.455 0.00 0.00 0.00 3.67
955 4773 0.319900 GCCGAGTGAGTGATGTGTGT 60.320 55.000 0.00 0.00 0.00 3.72
1095 4920 2.229675 TGAGCTACGATGGCATGAAG 57.770 50.000 3.81 0.00 0.00 3.02
1125 4950 6.699642 CCCGCAAAAAGAAAAGAATAACAAGA 59.300 34.615 0.00 0.00 0.00 3.02
1140 4965 4.180817 ACAAGAAAAAGACCCGCAAAAAG 58.819 39.130 0.00 0.00 0.00 2.27
1212 5039 3.370978 TCGTCGAAGCTCAATGAAATTCC 59.629 43.478 0.00 0.00 31.22 3.01
1213 5040 4.493220 CCTCGTCGAAGCTCAATGAAATTC 60.493 45.833 0.00 0.00 31.22 2.17
1259 5086 8.938801 ATTTAGGGATTTTTGCCTGAAATTTT 57.061 26.923 0.00 0.00 0.00 1.82
1298 5125 3.565307 TCAGGCAGATTTGGTCAAAAGT 58.435 40.909 0.00 0.00 33.56 2.66
1299 5126 4.589216 TTCAGGCAGATTTGGTCAAAAG 57.411 40.909 0.00 0.00 33.56 2.27
1343 5172 7.442657 GCATCAAGATTGACGAATTTTTCTTG 58.557 34.615 0.00 0.00 40.49 3.02
1368 5197 1.285641 GTGCACCAAACCATGTCCG 59.714 57.895 5.22 0.00 0.00 4.79
1393 5223 1.065551 GAACAAGGCTGCACGACTTTT 59.934 47.619 0.50 1.83 37.91 2.27
1422 5252 2.049185 ACAACCCTGCACAAACGCA 61.049 52.632 0.00 0.00 40.32 5.24
1428 5258 2.519063 CCAGCACAACCCTGCACA 60.519 61.111 0.00 0.00 39.86 4.57
1648 5478 4.269523 AAGAGCGCACCCTTGGCA 62.270 61.111 11.47 0.00 0.00 4.92
1713 5543 1.752683 TCAGGAGAACGTAGGAGAGC 58.247 55.000 0.00 0.00 0.00 4.09
1718 5548 5.701290 ACTTGAAAAATCAGGAGAACGTAGG 59.299 40.000 0.00 0.00 0.00 3.18
1723 5553 9.185192 CAAACATACTTGAAAAATCAGGAGAAC 57.815 33.333 0.00 0.00 0.00 3.01
1725 5555 7.505585 ACCAAACATACTTGAAAAATCAGGAGA 59.494 33.333 0.00 0.00 0.00 3.71
1844 5678 1.102154 CGCTCATCTGAGGACTCACT 58.898 55.000 9.15 0.00 42.29 3.41
1892 5726 0.902531 CCTTTGTAAGCCTCCTCGGA 59.097 55.000 0.00 0.00 33.16 4.55
1904 5738 4.468510 ACATTGGGTATCTCGTCCTTTGTA 59.531 41.667 0.00 0.00 0.00 2.41
1905 5739 3.263425 ACATTGGGTATCTCGTCCTTTGT 59.737 43.478 0.00 0.00 0.00 2.83
1965 5799 1.958579 TGAGTAACACGTACCAGCTGT 59.041 47.619 13.81 3.45 32.58 4.40
2006 5840 4.957684 AGTAGTAGTACATGAATGGCCC 57.042 45.455 10.33 0.00 0.00 5.80
2062 6059 3.762823 TGCATGCACATAGATCAACCAAA 59.237 39.130 18.46 0.00 0.00 3.28
2067 6064 4.758165 CCTACATGCATGCACATAGATCAA 59.242 41.667 29.16 5.69 0.00 2.57
2074 6071 2.148446 AACCCTACATGCATGCACAT 57.852 45.000 25.37 16.63 0.00 3.21
2100 6097 3.554692 CGCCGTGGATCTCAACGC 61.555 66.667 1.48 0.00 0.00 4.84
2209 6206 2.283604 TCCACCACCTCTAGCGCA 60.284 61.111 11.47 0.00 0.00 6.09
2270 6267 1.891150 GTAGTCGGTGAAGGGAGACAA 59.109 52.381 0.00 0.00 36.18 3.18
2482 6479 3.607299 TTCCCCTCCTCCCGGTCA 61.607 66.667 0.00 0.00 0.00 4.02
2518 6515 1.174783 AAGCGACGAGGTCAGTGTAT 58.825 50.000 0.00 0.00 32.09 2.29
2547 6544 1.439679 GTCTGGGTTTGCTAGGAACG 58.560 55.000 0.00 0.00 0.00 3.95
2554 6551 1.073923 CTTGGTAGGTCTGGGTTTGCT 59.926 52.381 0.00 0.00 0.00 3.91
2589 6586 0.250038 ATAGTCATTGAGCGGCGCAT 60.250 50.000 35.02 19.11 0.00 4.73
2618 6615 3.643792 ACAGGGTCAGAGGTATAGAATGC 59.356 47.826 0.00 0.00 0.00 3.56
2642 6639 2.334977 TGGATAATCGGTGTAGCCCAT 58.665 47.619 0.00 0.00 0.00 4.00
2701 6698 5.985781 TCTTCCTTTTTGTTTCTTCGATCG 58.014 37.500 9.36 9.36 0.00 3.69
2879 6880 1.342819 CTTCTATGAGCCCCCTTCTCG 59.657 57.143 0.00 0.00 33.41 4.04
2888 6889 4.128925 TCATGTGTCACTTCTATGAGCC 57.871 45.455 4.27 0.00 0.00 4.70
2908 6909 6.917477 TGTAAACAAGTTTCAACTCATGCATC 59.083 34.615 0.00 0.00 38.57 3.91
2920 6921 3.872771 TCTCCGGTGTGTAAACAAGTTTC 59.127 43.478 0.00 0.00 34.23 2.78
2955 6956 0.100861 GACGTTAGCTTAGCGAGGCT 59.899 55.000 8.75 8.75 43.41 4.58
2961 6962 2.000447 CCACAAGGACGTTAGCTTAGC 59.000 52.381 0.00 0.00 36.89 3.09
2962 6963 3.056749 ACTCCACAAGGACGTTAGCTTAG 60.057 47.826 0.00 0.00 39.61 2.18
2963 6964 2.895404 ACTCCACAAGGACGTTAGCTTA 59.105 45.455 0.00 0.00 39.61 3.09
2964 6965 1.692519 ACTCCACAAGGACGTTAGCTT 59.307 47.619 0.00 0.00 39.61 3.74
2965 6966 1.339097 ACTCCACAAGGACGTTAGCT 58.661 50.000 0.00 0.00 39.61 3.32
3003 7004 8.690203 TCTTGAGAAAACAATGATTGGTCTTA 57.310 30.769 10.27 3.61 34.12 2.10
3015 7016 4.500127 TGTCGTCACTCTTGAGAAAACAA 58.500 39.130 4.49 0.00 30.10 2.83
3017 7018 4.113354 ACTGTCGTCACTCTTGAGAAAAC 58.887 43.478 4.49 0.00 30.10 2.43
3034 7035 7.269084 CGTCATGAAACAATACAAATGACTGTC 59.731 37.037 0.00 0.00 40.97 3.51
3038 7039 8.500837 TTTCGTCATGAAACAATACAAATGAC 57.499 30.769 0.00 0.00 41.59 3.06
3053 7054 7.310664 CAGTTAGGTAAGTAGTTTCGTCATGA 58.689 38.462 0.00 0.00 0.00 3.07
3065 7066 7.031372 CGTCACATTTAGCAGTTAGGTAAGTA 58.969 38.462 0.00 0.00 40.89 2.24
3067 7068 5.867716 ACGTCACATTTAGCAGTTAGGTAAG 59.132 40.000 0.00 0.00 40.89 2.34
3069 7070 5.047872 TCACGTCACATTTAGCAGTTAGGTA 60.048 40.000 0.00 0.00 0.00 3.08
3070 7071 3.994392 CACGTCACATTTAGCAGTTAGGT 59.006 43.478 0.00 0.00 0.00 3.08
3072 7073 4.201628 GCTCACGTCACATTTAGCAGTTAG 60.202 45.833 0.00 0.00 0.00 2.34
3073 7074 3.678072 GCTCACGTCACATTTAGCAGTTA 59.322 43.478 0.00 0.00 0.00 2.24
3076 7077 2.068519 TGCTCACGTCACATTTAGCAG 58.931 47.619 0.00 0.00 35.20 4.24
3089 7090 2.926200 CAGTTCCAGTTAGATGCTCACG 59.074 50.000 0.00 0.00 0.00 4.35
3101 7102 4.528596 ACTATAGCAGAACACAGTTCCAGT 59.471 41.667 0.00 0.00 0.00 4.00
3115 7116 8.194104 AGAAGTAATCAACTGTCACTATAGCAG 58.806 37.037 0.00 2.06 38.88 4.24
3116 7117 8.067751 AGAAGTAATCAACTGTCACTATAGCA 57.932 34.615 0.00 0.00 38.88 3.49
3122 7123 7.976734 GCACTATAGAAGTAATCAACTGTCACT 59.023 37.037 6.78 0.00 38.88 3.41
3123 7124 7.222999 GGCACTATAGAAGTAATCAACTGTCAC 59.777 40.741 6.78 0.00 38.88 3.67
3124 7125 7.093509 TGGCACTATAGAAGTAATCAACTGTCA 60.094 37.037 6.78 0.00 38.88 3.58
3125 7126 7.265673 TGGCACTATAGAAGTAATCAACTGTC 58.734 38.462 6.78 0.00 38.88 3.51
3126 7127 7.182817 TGGCACTATAGAAGTAATCAACTGT 57.817 36.000 6.78 0.00 38.88 3.55
3127 7128 8.668510 ATTGGCACTATAGAAGTAATCAACTG 57.331 34.615 6.78 0.00 38.88 3.16
3136 7137 8.532819 GCTACCTAATATTGGCACTATAGAAGT 58.467 37.037 6.78 0.00 39.81 3.01
3137 7138 8.531982 TGCTACCTAATATTGGCACTATAGAAG 58.468 37.037 6.78 0.00 0.00 2.85
3138 7139 8.311836 GTGCTACCTAATATTGGCACTATAGAA 58.688 37.037 6.78 0.00 44.20 2.10
3139 7140 7.093465 GGTGCTACCTAATATTGGCACTATAGA 60.093 40.741 20.31 0.00 46.01 1.98
3140 7141 7.042335 GGTGCTACCTAATATTGGCACTATAG 58.958 42.308 20.31 0.00 46.01 1.31
3141 7142 6.070424 GGGTGCTACCTAATATTGGCACTATA 60.070 42.308 20.31 0.00 46.01 1.31
3142 7143 5.280521 GGGTGCTACCTAATATTGGCACTAT 60.281 44.000 20.31 0.00 46.01 2.12
3143 7144 4.041198 GGGTGCTACCTAATATTGGCACTA 59.959 45.833 20.31 0.00 46.01 2.74
3144 7145 3.181443 GGGTGCTACCTAATATTGGCACT 60.181 47.826 20.31 0.00 46.01 4.40
3145 7146 3.146847 GGGTGCTACCTAATATTGGCAC 58.853 50.000 16.44 16.44 46.02 5.01
3146 7147 2.780592 TGGGTGCTACCTAATATTGGCA 59.219 45.455 0.00 0.00 38.64 4.92
3147 7148 3.146847 GTGGGTGCTACCTAATATTGGC 58.853 50.000 0.00 0.00 38.64 4.52
3148 7149 4.706842 AGTGGGTGCTACCTAATATTGG 57.293 45.455 0.00 0.00 38.64 3.16
3149 7150 7.404671 AAAAAGTGGGTGCTACCTAATATTG 57.595 36.000 0.00 0.00 38.64 1.90
3150 7151 9.709387 AATAAAAAGTGGGTGCTACCTAATATT 57.291 29.630 5.48 0.00 38.64 1.28
3151 7152 9.709387 AAATAAAAAGTGGGTGCTACCTAATAT 57.291 29.630 5.48 0.00 38.64 1.28
3153 7154 9.536510 TTAAATAAAAAGTGGGTGCTACCTAAT 57.463 29.630 5.48 0.00 38.64 1.73
3154 7155 8.937207 TTAAATAAAAAGTGGGTGCTACCTAA 57.063 30.769 5.48 0.00 38.64 2.69
3155 7156 8.937207 TTTAAATAAAAAGTGGGTGCTACCTA 57.063 30.769 5.48 0.00 38.64 3.08
3156 7157 7.842887 TTTAAATAAAAAGTGGGTGCTACCT 57.157 32.000 5.48 0.00 38.64 3.08
3157 7158 8.890124 TTTTTAAATAAAAAGTGGGTGCTACC 57.110 30.769 6.92 0.00 39.46 3.18
3160 7161 9.271828 CTCATTTTTAAATAAAAAGTGGGTGCT 57.728 29.630 14.34 0.00 45.11 4.40
3161 7162 8.015087 GCTCATTTTTAAATAAAAAGTGGGTGC 58.985 33.333 14.34 11.86 43.60 5.01
3162 7163 9.271828 AGCTCATTTTTAAATAAAAAGTGGGTG 57.728 29.630 14.34 8.89 43.60 4.61
3163 7164 9.271828 CAGCTCATTTTTAAATAAAAAGTGGGT 57.728 29.630 14.34 9.86 43.60 4.51
3164 7165 8.720562 CCAGCTCATTTTTAAATAAAAAGTGGG 58.279 33.333 14.34 12.92 44.19 4.61
3165 7166 8.229811 GCCAGCTCATTTTTAAATAAAAAGTGG 58.770 33.333 14.34 14.42 45.11 4.00
3166 7167 8.992073 AGCCAGCTCATTTTTAAATAAAAAGTG 58.008 29.630 14.34 12.37 45.11 3.16
3167 7168 8.992073 CAGCCAGCTCATTTTTAAATAAAAAGT 58.008 29.630 14.34 3.64 45.11 2.66
3375 7376 9.632807 TTCCATAAAGTTTTCGTTGAATATTGG 57.367 29.630 0.00 0.00 0.00 3.16
3378 7379 9.634163 GGTTTCCATAAAGTTTTCGTTGAATAT 57.366 29.630 0.00 0.00 0.00 1.28
3379 7380 8.630917 TGGTTTCCATAAAGTTTTCGTTGAATA 58.369 29.630 0.00 0.00 0.00 1.75
3380 7381 7.493367 TGGTTTCCATAAAGTTTTCGTTGAAT 58.507 30.769 0.00 0.00 0.00 2.57
3381 7382 6.864342 TGGTTTCCATAAAGTTTTCGTTGAA 58.136 32.000 0.00 0.00 0.00 2.69
3382 7383 6.452494 TGGTTTCCATAAAGTTTTCGTTGA 57.548 33.333 0.00 0.00 0.00 3.18
3429 7430 9.122779 CCCTTTTAATATCCCGTATTTTGTACA 57.877 33.333 0.00 0.00 34.82 2.90
3430 7431 9.123902 ACCCTTTTAATATCCCGTATTTTGTAC 57.876 33.333 0.00 0.00 34.82 2.90
3431 7432 9.122779 CACCCTTTTAATATCCCGTATTTTGTA 57.877 33.333 0.00 0.00 34.82 2.41
3432 7433 7.835181 TCACCCTTTTAATATCCCGTATTTTGT 59.165 33.333 0.00 0.00 34.82 2.83
3433 7434 8.228035 TCACCCTTTTAATATCCCGTATTTTG 57.772 34.615 0.00 0.00 34.82 2.44
3434 7435 8.856103 CATCACCCTTTTAATATCCCGTATTTT 58.144 33.333 0.00 0.00 34.82 1.82
3435 7436 8.002459 ACATCACCCTTTTAATATCCCGTATTT 58.998 33.333 0.00 0.00 34.82 1.40
3436 7437 7.523415 ACATCACCCTTTTAATATCCCGTATT 58.477 34.615 0.00 0.00 36.90 1.89
3437 7438 7.086685 ACATCACCCTTTTAATATCCCGTAT 57.913 36.000 0.00 0.00 0.00 3.06
3438 7439 6.503560 ACATCACCCTTTTAATATCCCGTA 57.496 37.500 0.00 0.00 0.00 4.02
3439 7440 5.382664 ACATCACCCTTTTAATATCCCGT 57.617 39.130 0.00 0.00 0.00 5.28
3440 7441 6.709018 AAACATCACCCTTTTAATATCCCG 57.291 37.500 0.00 0.00 0.00 5.14
3444 7445 9.830975 GGCAATAAAACATCACCCTTTTAATAT 57.169 29.630 0.00 0.00 0.00 1.28
3445 7446 8.816894 TGGCAATAAAACATCACCCTTTTAATA 58.183 29.630 0.00 0.00 0.00 0.98
3446 7447 7.606073 GTGGCAATAAAACATCACCCTTTTAAT 59.394 33.333 0.00 0.00 0.00 1.40
3447 7448 6.931840 GTGGCAATAAAACATCACCCTTTTAA 59.068 34.615 0.00 0.00 0.00 1.52
3448 7449 6.042093 TGTGGCAATAAAACATCACCCTTTTA 59.958 34.615 0.00 0.00 0.00 1.52
3449 7450 5.163258 TGTGGCAATAAAACATCACCCTTTT 60.163 36.000 0.00 0.00 0.00 2.27
3450 7451 4.346418 TGTGGCAATAAAACATCACCCTTT 59.654 37.500 0.00 0.00 0.00 3.11
3451 7452 3.900601 TGTGGCAATAAAACATCACCCTT 59.099 39.130 0.00 0.00 0.00 3.95
3452 7453 3.258123 GTGTGGCAATAAAACATCACCCT 59.742 43.478 0.00 0.00 0.00 4.34
3453 7454 3.006323 TGTGTGGCAATAAAACATCACCC 59.994 43.478 0.00 0.00 0.00 4.61
3454 7455 4.250116 TGTGTGGCAATAAAACATCACC 57.750 40.909 0.00 0.00 0.00 4.02
3455 7456 6.035843 CCTATGTGTGGCAATAAAACATCAC 58.964 40.000 0.00 0.00 33.67 3.06
3456 7457 5.714333 ACCTATGTGTGGCAATAAAACATCA 59.286 36.000 0.00 0.00 33.67 3.07
3457 7458 6.207691 ACCTATGTGTGGCAATAAAACATC 57.792 37.500 0.00 0.00 33.67 3.06
3458 7459 7.710676 TTACCTATGTGTGGCAATAAAACAT 57.289 32.000 0.00 0.00 35.70 2.71
3459 7460 7.394641 TGATTACCTATGTGTGGCAATAAAACA 59.605 33.333 0.00 0.00 0.00 2.83
3460 7461 7.767261 TGATTACCTATGTGTGGCAATAAAAC 58.233 34.615 0.00 0.00 0.00 2.43
3461 7462 7.946381 TGATTACCTATGTGTGGCAATAAAA 57.054 32.000 0.00 0.00 0.00 1.52
3462 7463 7.230510 GGATGATTACCTATGTGTGGCAATAAA 59.769 37.037 0.00 0.00 0.00 1.40
3463 7464 6.714810 GGATGATTACCTATGTGTGGCAATAA 59.285 38.462 0.00 0.00 0.00 1.40
3464 7465 6.044287 AGGATGATTACCTATGTGTGGCAATA 59.956 38.462 0.00 0.00 35.84 1.90
3465 7466 5.072741 GGATGATTACCTATGTGTGGCAAT 58.927 41.667 0.00 0.00 0.00 3.56
3466 7467 4.165950 AGGATGATTACCTATGTGTGGCAA 59.834 41.667 0.00 0.00 35.84 4.52
3467 7468 3.716353 AGGATGATTACCTATGTGTGGCA 59.284 43.478 0.00 0.00 35.84 4.92
3468 7469 4.040952 AGAGGATGATTACCTATGTGTGGC 59.959 45.833 0.00 0.00 37.93 5.01
3469 7470 5.815233 AGAGGATGATTACCTATGTGTGG 57.185 43.478 0.00 0.00 37.93 4.17
3470 7471 8.204160 TGTTAAGAGGATGATTACCTATGTGTG 58.796 37.037 0.00 0.00 37.93 3.82
3471 7472 8.319057 TGTTAAGAGGATGATTACCTATGTGT 57.681 34.615 0.00 0.00 37.93 3.72
3472 7473 9.429359 GATGTTAAGAGGATGATTACCTATGTG 57.571 37.037 0.00 0.00 37.93 3.21
3473 7474 8.598041 GGATGTTAAGAGGATGATTACCTATGT 58.402 37.037 0.00 0.00 37.93 2.29
3474 7475 8.043710 GGGATGTTAAGAGGATGATTACCTATG 58.956 40.741 0.00 0.00 37.93 2.23
3475 7476 7.093289 CGGGATGTTAAGAGGATGATTACCTAT 60.093 40.741 0.00 0.00 37.93 2.57
3476 7477 6.210784 CGGGATGTTAAGAGGATGATTACCTA 59.789 42.308 0.00 0.00 37.93 3.08
3477 7478 5.012148 CGGGATGTTAAGAGGATGATTACCT 59.988 44.000 0.00 0.00 40.80 3.08
3478 7479 5.221661 ACGGGATGTTAAGAGGATGATTACC 60.222 44.000 0.00 0.00 0.00 2.85
3479 7480 5.855045 ACGGGATGTTAAGAGGATGATTAC 58.145 41.667 0.00 0.00 0.00 1.89
3480 7481 7.792364 ATACGGGATGTTAAGAGGATGATTA 57.208 36.000 0.00 0.00 0.00 1.75
3481 7482 6.688073 ATACGGGATGTTAAGAGGATGATT 57.312 37.500 0.00 0.00 0.00 2.57
3482 7483 6.688073 AATACGGGATGTTAAGAGGATGAT 57.312 37.500 0.00 0.00 0.00 2.45
3483 7484 6.494666 AAATACGGGATGTTAAGAGGATGA 57.505 37.500 0.00 0.00 0.00 2.92
3484 7485 7.568199 AAAAATACGGGATGTTAAGAGGATG 57.432 36.000 0.00 0.00 0.00 3.51
3519 7520 9.677567 CAAGAAAAGGATGATTAAAGTTTCGAA 57.322 29.630 0.00 0.00 0.00 3.71
3520 7521 8.846211 ACAAGAAAAGGATGATTAAAGTTTCGA 58.154 29.630 0.00 0.00 0.00 3.71
3521 7522 8.905702 CACAAGAAAAGGATGATTAAAGTTTCG 58.094 33.333 0.00 0.00 0.00 3.46
3522 7523 9.196552 CCACAAGAAAAGGATGATTAAAGTTTC 57.803 33.333 0.00 0.00 0.00 2.78
3523 7524 8.704668 ACCACAAGAAAAGGATGATTAAAGTTT 58.295 29.630 0.00 0.00 0.00 2.66
3524 7525 8.250143 ACCACAAGAAAAGGATGATTAAAGTT 57.750 30.769 0.00 0.00 0.00 2.66
3525 7526 7.839680 ACCACAAGAAAAGGATGATTAAAGT 57.160 32.000 0.00 0.00 0.00 2.66
3526 7527 9.546428 AAAACCACAAGAAAAGGATGATTAAAG 57.454 29.630 0.00 0.00 0.00 1.85
3527 7528 9.541143 GAAAACCACAAGAAAAGGATGATTAAA 57.459 29.630 0.00 0.00 0.00 1.52
3528 7529 8.700051 TGAAAACCACAAGAAAAGGATGATTAA 58.300 29.630 0.00 0.00 0.00 1.40
3529 7530 8.243961 TGAAAACCACAAGAAAAGGATGATTA 57.756 30.769 0.00 0.00 0.00 1.75
3530 7531 7.123355 TGAAAACCACAAGAAAAGGATGATT 57.877 32.000 0.00 0.00 0.00 2.57
3531 7532 6.729690 TGAAAACCACAAGAAAAGGATGAT 57.270 33.333 0.00 0.00 0.00 2.45
3532 7533 6.537453 TTGAAAACCACAAGAAAAGGATGA 57.463 33.333 0.00 0.00 0.00 2.92
3533 7534 6.203338 CCATTGAAAACCACAAGAAAAGGATG 59.797 38.462 0.00 0.00 0.00 3.51
3534 7535 6.126796 ACCATTGAAAACCACAAGAAAAGGAT 60.127 34.615 0.00 0.00 0.00 3.24
3535 7536 5.188751 ACCATTGAAAACCACAAGAAAAGGA 59.811 36.000 0.00 0.00 0.00 3.36
3536 7537 5.427378 ACCATTGAAAACCACAAGAAAAGG 58.573 37.500 0.00 0.00 0.00 3.11
3537 7538 6.983474 AACCATTGAAAACCACAAGAAAAG 57.017 33.333 0.00 0.00 0.00 2.27
3538 7539 7.445402 TGAAAACCATTGAAAACCACAAGAAAA 59.555 29.630 0.00 0.00 0.00 2.29
3539 7540 6.936900 TGAAAACCATTGAAAACCACAAGAAA 59.063 30.769 0.00 0.00 0.00 2.52
3540 7541 6.370166 GTGAAAACCATTGAAAACCACAAGAA 59.630 34.615 0.00 0.00 0.00 2.52
3541 7542 5.872070 GTGAAAACCATTGAAAACCACAAGA 59.128 36.000 0.00 0.00 0.00 3.02
3542 7543 5.064579 GGTGAAAACCATTGAAAACCACAAG 59.935 40.000 0.00 0.00 0.00 3.16
3543 7544 4.938226 GGTGAAAACCATTGAAAACCACAA 59.062 37.500 0.00 0.00 0.00 3.33
3544 7545 4.508662 GGTGAAAACCATTGAAAACCACA 58.491 39.130 0.00 0.00 0.00 4.17
3545 7546 3.553917 CGGTGAAAACCATTGAAAACCAC 59.446 43.478 0.00 0.00 0.00 4.16
3546 7547 3.447586 TCGGTGAAAACCATTGAAAACCA 59.552 39.130 0.00 0.00 0.00 3.67
3547 7548 4.048241 TCGGTGAAAACCATTGAAAACC 57.952 40.909 0.00 0.00 0.00 3.27
3548 7549 5.522097 ACATTCGGTGAAAACCATTGAAAAC 59.478 36.000 0.00 0.00 0.00 2.43
3549 7550 5.665459 ACATTCGGTGAAAACCATTGAAAA 58.335 33.333 0.00 0.00 0.00 2.29
3550 7551 5.269505 ACATTCGGTGAAAACCATTGAAA 57.730 34.783 0.00 0.00 0.00 2.69
3551 7552 4.927978 ACATTCGGTGAAAACCATTGAA 57.072 36.364 0.00 0.00 0.00 2.69
3552 7553 4.500545 CCAACATTCGGTGAAAACCATTGA 60.501 41.667 0.00 0.00 0.00 2.57
3553 7554 3.740321 CCAACATTCGGTGAAAACCATTG 59.260 43.478 0.00 0.00 0.00 2.82
3554 7555 3.801983 GCCAACATTCGGTGAAAACCATT 60.802 43.478 0.00 0.00 0.00 3.16
3555 7556 2.288763 GCCAACATTCGGTGAAAACCAT 60.289 45.455 0.00 0.00 0.00 3.55
3556 7557 1.067821 GCCAACATTCGGTGAAAACCA 59.932 47.619 0.00 0.00 0.00 3.67
3557 7558 1.339929 AGCCAACATTCGGTGAAAACC 59.660 47.619 0.00 0.00 0.00 3.27
3558 7559 2.793278 AGCCAACATTCGGTGAAAAC 57.207 45.000 0.00 0.00 0.00 2.43
3559 7560 2.035321 GGAAGCCAACATTCGGTGAAAA 59.965 45.455 0.00 0.00 0.00 2.29
3560 7561 1.611491 GGAAGCCAACATTCGGTGAAA 59.389 47.619 0.00 0.00 0.00 2.69
3561 7562 1.243902 GGAAGCCAACATTCGGTGAA 58.756 50.000 0.00 0.00 0.00 3.18
3562 7563 0.953471 CGGAAGCCAACATTCGGTGA 60.953 55.000 0.00 0.00 0.00 4.02
3563 7564 1.501741 CGGAAGCCAACATTCGGTG 59.498 57.895 0.00 0.00 0.00 4.94
3564 7565 3.981308 CGGAAGCCAACATTCGGT 58.019 55.556 0.00 0.00 0.00 4.69
3576 7577 1.303309 GGGAGAATGTCATGCGGAAG 58.697 55.000 0.00 0.00 0.00 3.46
3577 7578 0.461870 CGGGAGAATGTCATGCGGAA 60.462 55.000 0.00 0.00 0.00 4.30
3578 7579 1.143838 CGGGAGAATGTCATGCGGA 59.856 57.895 0.00 0.00 0.00 5.54
3579 7580 0.877649 CTCGGGAGAATGTCATGCGG 60.878 60.000 0.00 0.00 39.18 5.69
3580 7581 0.877649 CCTCGGGAGAATGTCATGCG 60.878 60.000 0.00 0.00 39.18 4.73
3581 7582 0.465705 TCCTCGGGAGAATGTCATGC 59.534 55.000 0.00 0.00 39.18 4.06
3582 7583 2.549563 CCATCCTCGGGAGAATGTCATG 60.550 54.545 0.00 0.00 39.18 3.07
3583 7584 1.696336 CCATCCTCGGGAGAATGTCAT 59.304 52.381 0.00 0.00 39.18 3.06
3584 7585 1.123077 CCATCCTCGGGAGAATGTCA 58.877 55.000 0.00 0.00 39.18 3.58
3585 7586 1.123928 ACCATCCTCGGGAGAATGTC 58.876 55.000 0.00 0.00 39.18 3.06
3586 7587 2.040178 GTACCATCCTCGGGAGAATGT 58.960 52.381 0.00 0.00 39.18 2.71
3587 7588 2.039418 TGTACCATCCTCGGGAGAATG 58.961 52.381 0.00 0.00 39.18 2.67
3588 7589 2.040178 GTGTACCATCCTCGGGAGAAT 58.960 52.381 0.00 0.00 39.18 2.40
3589 7590 1.006758 AGTGTACCATCCTCGGGAGAA 59.993 52.381 0.00 0.00 39.18 2.87
3590 7591 0.629596 AGTGTACCATCCTCGGGAGA 59.370 55.000 0.00 0.00 34.05 3.71
3591 7592 2.231529 CTAGTGTACCATCCTCGGGAG 58.768 57.143 0.00 0.00 34.05 4.30
3592 7593 1.753141 GCTAGTGTACCATCCTCGGGA 60.753 57.143 0.00 0.00 35.55 5.14
3593 7594 0.674534 GCTAGTGTACCATCCTCGGG 59.325 60.000 0.00 0.00 0.00 5.14
3594 7595 1.067212 GTGCTAGTGTACCATCCTCGG 59.933 57.143 0.00 0.00 0.00 4.63
3595 7596 1.268589 CGTGCTAGTGTACCATCCTCG 60.269 57.143 0.00 0.00 0.00 4.63
3596 7597 2.022195 TCGTGCTAGTGTACCATCCTC 58.978 52.381 0.00 0.00 0.00 3.71
3597 7598 2.139323 TCGTGCTAGTGTACCATCCT 57.861 50.000 0.00 0.00 0.00 3.24
3598 7599 2.953466 TTCGTGCTAGTGTACCATCC 57.047 50.000 0.00 0.00 0.00 3.51
3599 7600 5.796350 ATTTTTCGTGCTAGTGTACCATC 57.204 39.130 0.00 0.00 0.00 3.51
3600 7601 7.859325 ATTATTTTTCGTGCTAGTGTACCAT 57.141 32.000 0.00 0.00 0.00 3.55
3601 7602 8.774890 TTATTATTTTTCGTGCTAGTGTACCA 57.225 30.769 0.00 0.00 0.00 3.25


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.