Multiple sequence alignment - TraesCS1A01G213300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G213300 chr1A 100.000 3282 0 0 1 3282 376512088 376515369 0.000000e+00 6061
1 TraesCS1A01G213300 chr1B 93.434 2589 101 34 1 2557 407304053 407306604 0.000000e+00 3775
2 TraesCS1A01G213300 chr1B 90.184 652 31 12 2556 3188 407308817 407309454 0.000000e+00 819
3 TraesCS1A01G213300 chr1D 93.134 2447 90 39 139 2557 301639193 301641589 0.000000e+00 3517
4 TraesCS1A01G213300 chr1D 90.783 651 28 11 2556 3188 301641696 301642332 0.000000e+00 841
5 TraesCS1A01G213300 chr4A 86.885 183 18 6 2757 2936 548783818 548783997 2.000000e-47 200
6 TraesCS1A01G213300 chr5D 83.333 186 26 4 2752 2935 83086151 83086333 2.030000e-37 167
7 TraesCS1A01G213300 chr4D 83.069 189 26 5 2731 2916 35676477 35676292 2.030000e-37 167
8 TraesCS1A01G213300 chr2B 83.243 185 24 6 2713 2894 416749880 416749700 2.620000e-36 163
9 TraesCS1A01G213300 chr7D 82.703 185 26 5 2713 2894 382475264 382475445 3.390000e-35 159
10 TraesCS1A01G213300 chr3B 82.703 185 25 6 2713 2894 113686354 113686534 1.220000e-34 158
11 TraesCS1A01G213300 chr6D 82.162 185 27 5 2713 2894 329099776 329099595 1.580000e-33 154


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G213300 chr1A 376512088 376515369 3281 False 6061 6061 100.0000 1 3282 1 chr1A.!!$F1 3281
1 TraesCS1A01G213300 chr1B 407304053 407309454 5401 False 2297 3775 91.8090 1 3188 2 chr1B.!!$F1 3187
2 TraesCS1A01G213300 chr1D 301639193 301642332 3139 False 2179 3517 91.9585 139 3188 2 chr1D.!!$F1 3049

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
630 643 0.247814 CAAATCCAGCACGCGTCATC 60.248 55.0 9.86 0.85 0.00 2.92 F
1179 1200 0.040514 TGCTGTTTCGCATCCGTTTG 60.041 50.0 0.00 0.00 34.44 2.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1725 1770 0.398696 ACCCCGTGTTAGCACAATGA 59.601 50.0 10.49 0.0 45.5 2.57 R
3141 5418 0.320374 CCGCCACCTGAGTCTTGTTA 59.680 55.0 0.00 0.0 0.0 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
99 100 5.929992 TCGTCTGGTTTAATCCTACAAACAG 59.070 40.000 4.25 0.00 36.56 3.16
267 268 7.490000 AGTAATTAAACCTCCAGATACTGACG 58.510 38.462 0.00 0.00 32.44 4.35
380 381 5.982516 TCAAACATTGAGCTTAAAACGCAAT 59.017 32.000 0.00 2.51 37.93 3.56
405 406 5.902613 TGGTCAATCTCATTCCACAAATC 57.097 39.130 0.00 0.00 0.00 2.17
442 443 8.019669 CGGATATATTTTGAAGAAGGCAATCTG 58.980 37.037 0.00 0.00 0.00 2.90
483 484 5.463061 AGCTGAAAACAATTGAAATGGAACG 59.537 36.000 13.59 0.00 0.00 3.95
598 599 2.041485 TCCTGATCAAGCCAAATCCACA 59.959 45.455 0.00 0.00 0.00 4.17
625 638 1.135717 TCAAATCAAATCCAGCACGCG 60.136 47.619 3.53 3.53 0.00 6.01
626 639 0.881118 AAATCAAATCCAGCACGCGT 59.119 45.000 5.58 5.58 0.00 6.01
627 640 0.447801 AATCAAATCCAGCACGCGTC 59.552 50.000 9.86 4.43 0.00 5.19
628 641 0.673333 ATCAAATCCAGCACGCGTCA 60.673 50.000 9.86 0.00 0.00 4.35
629 642 0.673333 TCAAATCCAGCACGCGTCAT 60.673 50.000 9.86 0.00 0.00 3.06
630 643 0.247814 CAAATCCAGCACGCGTCATC 60.248 55.000 9.86 0.85 0.00 2.92
631 644 1.369091 AAATCCAGCACGCGTCATCC 61.369 55.000 9.86 0.00 0.00 3.51
632 645 2.520465 AATCCAGCACGCGTCATCCA 62.520 55.000 9.86 0.00 0.00 3.41
633 646 3.490759 CCAGCACGCGTCATCCAC 61.491 66.667 9.86 0.00 0.00 4.02
634 647 3.490759 CAGCACGCGTCATCCACC 61.491 66.667 9.86 0.00 0.00 4.61
635 648 4.002506 AGCACGCGTCATCCACCA 62.003 61.111 9.86 0.00 0.00 4.17
636 649 3.490759 GCACGCGTCATCCACCAG 61.491 66.667 9.86 0.00 0.00 4.00
637 650 3.490759 CACGCGTCATCCACCAGC 61.491 66.667 9.86 0.00 0.00 4.85
641 654 2.528743 GCGTCATCCACCAGCATCG 61.529 63.158 0.00 0.00 0.00 3.84
849 868 0.986527 TAGGGGGTTCGGGAGTTTTC 59.013 55.000 0.00 0.00 0.00 2.29
850 869 1.673337 GGGGGTTCGGGAGTTTTCG 60.673 63.158 0.00 0.00 0.00 3.46
865 884 1.764571 TTTCGACCCACCACCTCTGG 61.765 60.000 0.00 0.00 44.26 3.86
876 896 2.105821 ACCACCTCTGGAATGTTTCGAA 59.894 45.455 0.00 0.00 40.55 3.71
879 899 4.379813 CCACCTCTGGAATGTTTCGAATTG 60.380 45.833 0.00 0.00 40.55 2.32
927 947 1.152589 TGGCCCATGTTGCAGTTGA 60.153 52.632 0.00 0.00 0.00 3.18
951 971 1.202818 GGCTGGGCCTCGAATTATTCT 60.203 52.381 4.53 0.00 46.69 2.40
961 981 1.070309 CGAATTATTCTGAGGCTGCGC 60.070 52.381 0.00 0.00 0.00 6.09
1159 1180 3.850752 TCCTCTCTCCTTGTCTGTTTCT 58.149 45.455 0.00 0.00 0.00 2.52
1160 1181 4.227197 TCCTCTCTCCTTGTCTGTTTCTT 58.773 43.478 0.00 0.00 0.00 2.52
1161 1182 4.039730 TCCTCTCTCCTTGTCTGTTTCTTG 59.960 45.833 0.00 0.00 0.00 3.02
1162 1183 3.733337 TCTCTCCTTGTCTGTTTCTTGC 58.267 45.455 0.00 0.00 0.00 4.01
1163 1184 3.389329 TCTCTCCTTGTCTGTTTCTTGCT 59.611 43.478 0.00 0.00 0.00 3.91
1165 1186 3.118261 TCTCCTTGTCTGTTTCTTGCTGT 60.118 43.478 0.00 0.00 0.00 4.40
1167 1188 4.016444 TCCTTGTCTGTTTCTTGCTGTTT 58.984 39.130 0.00 0.00 0.00 2.83
1170 1191 2.223249 TGTCTGTTTCTTGCTGTTTCGC 60.223 45.455 0.00 0.00 0.00 4.70
1171 1192 2.013400 TCTGTTTCTTGCTGTTTCGCA 58.987 42.857 0.00 0.00 38.31 5.10
1172 1193 2.618241 TCTGTTTCTTGCTGTTTCGCAT 59.382 40.909 0.00 0.00 40.04 4.73
1173 1194 2.975851 CTGTTTCTTGCTGTTTCGCATC 59.024 45.455 0.00 0.00 40.04 3.91
1174 1195 2.287547 TGTTTCTTGCTGTTTCGCATCC 60.288 45.455 0.00 0.00 40.04 3.51
1175 1196 0.516877 TTCTTGCTGTTTCGCATCCG 59.483 50.000 0.00 0.00 40.04 4.18
1176 1197 0.602638 TCTTGCTGTTTCGCATCCGT 60.603 50.000 0.00 0.00 40.04 4.69
1177 1198 0.238289 CTTGCTGTTTCGCATCCGTT 59.762 50.000 0.00 0.00 40.04 4.44
1178 1199 0.665835 TTGCTGTTTCGCATCCGTTT 59.334 45.000 0.00 0.00 40.04 3.60
1179 1200 0.040514 TGCTGTTTCGCATCCGTTTG 60.041 50.000 0.00 0.00 34.44 2.93
1180 1201 0.729140 GCTGTTTCGCATCCGTTTGG 60.729 55.000 0.00 0.00 35.54 3.28
1193 1214 4.545208 TCCGTTTGGATGTGATACAAGA 57.455 40.909 0.00 0.00 40.17 3.02
1194 1215 4.503910 TCCGTTTGGATGTGATACAAGAG 58.496 43.478 0.00 0.00 40.17 2.85
1195 1216 3.063997 CCGTTTGGATGTGATACAAGAGC 59.936 47.826 0.00 0.00 33.93 4.09
1196 1217 3.684305 CGTTTGGATGTGATACAAGAGCA 59.316 43.478 0.00 0.00 33.93 4.26
1197 1218 4.154015 CGTTTGGATGTGATACAAGAGCAA 59.846 41.667 0.00 0.00 33.93 3.91
1209 1230 7.113965 GTGATACAAGAGCAACAATTTGTCAAG 59.886 37.037 1.83 0.00 35.55 3.02
1222 1243 5.728637 ATTTGTCAAGTCTGGGGAATTTC 57.271 39.130 0.00 0.00 0.00 2.17
1245 1266 2.093973 ACAGGAAGTAGGTGCTGATTCG 60.094 50.000 0.44 0.00 39.16 3.34
1252 1273 0.671781 AGGTGCTGATTCGTGCAGAC 60.672 55.000 4.70 2.52 40.06 3.51
1288 1309 0.890683 CCCAAGGGTGTGAATCTTGC 59.109 55.000 0.00 0.00 37.24 4.01
1295 1316 2.866762 GGGTGTGAATCTTGCGATAGAC 59.133 50.000 0.00 0.00 39.76 2.59
1315 1336 1.673033 CGTGGTAGTTCCTCCTTGCAG 60.673 57.143 0.00 0.00 37.07 4.41
1329 1350 5.452078 TCCTTGCAGTTAGGTTTTGAATG 57.548 39.130 2.88 0.00 34.29 2.67
1330 1351 5.136828 TCCTTGCAGTTAGGTTTTGAATGA 58.863 37.500 2.88 0.00 34.29 2.57
1345 1366 5.842619 TTGAATGAATTTTCACGCCATTG 57.157 34.783 0.00 0.00 40.49 2.82
1347 1368 4.685165 TGAATGAATTTTCACGCCATTGTG 59.315 37.500 0.00 0.00 40.49 3.33
1355 1376 1.199789 TCACGCCATTGTGATTGCTTC 59.800 47.619 0.00 0.00 43.62 3.86
1417 1453 4.148696 GTCAAGACCGCATTGAACATTTTG 59.851 41.667 0.00 0.00 38.34 2.44
1420 1456 2.986479 GACCGCATTGAACATTTTGTCC 59.014 45.455 0.00 0.00 0.00 4.02
1435 1480 9.912634 AACATTTTGTCCACATTTATCAAGTAG 57.087 29.630 0.00 0.00 0.00 2.57
1471 1516 4.511527 TGGCATTGAGAAAGTTGCAAAAA 58.488 34.783 0.00 0.00 36.82 1.94
1565 1610 2.851263 ACCTCGTGGTGCTTAATCAA 57.149 45.000 8.68 0.00 46.51 2.57
1571 1616 4.769688 TCGTGGTGCTTAATCAATCAGAT 58.230 39.130 0.00 0.00 39.09 2.90
1599 1644 1.407437 GGAAGTCACCCTGATTGCGAT 60.407 52.381 0.00 0.00 0.00 4.58
1614 1659 1.134220 TGCGATAATGTTCTGTCCCCC 60.134 52.381 0.00 0.00 0.00 5.40
1844 1889 7.658575 AGAGCAAGTAAAATGTCATTTTGCATT 59.341 29.630 29.26 20.67 44.10 3.56
1975 2020 3.627577 ACAGTAGTTTGCAAAGGTGACTG 59.372 43.478 25.90 25.90 42.68 3.51
1976 2021 2.618709 AGTAGTTTGCAAAGGTGACTGC 59.381 45.455 13.26 10.04 42.68 4.40
1979 2024 1.733402 TTTGCAAAGGTGACTGCCCG 61.733 55.000 8.05 0.00 42.68 6.13
2196 2241 4.096382 ACAACTGTTGTCAAACATGGAGAC 59.904 41.667 19.85 2.55 45.12 3.36
2303 2348 1.135972 GTGTTCACTGTGGCTTATGCG 60.136 52.381 8.11 0.00 40.82 4.73
2319 2364 6.248631 GCTTATGCGAAAAGGTAGTTTAGTG 58.751 40.000 0.00 0.00 0.00 2.74
2333 2378 6.769341 GGTAGTTTAGTGTTTCTTCTTTGGGA 59.231 38.462 0.00 0.00 0.00 4.37
2346 2391 5.548056 TCTTCTTTGGGACACCTCTTATTCT 59.452 40.000 0.00 0.00 39.29 2.40
2417 2462 8.103305 TCTCCAATTGAACTAATCTTTGCTAGT 58.897 33.333 7.12 0.00 0.00 2.57
2457 2502 6.972328 TCAGTGTGATTGAAAGCAAACTAAAC 59.028 34.615 3.91 0.00 40.69 2.01
2472 2517 6.238814 GCAAACTAAACACTAGCTTTGGGTTA 60.239 38.462 7.35 0.00 0.00 2.85
2483 2528 5.077134 AGCTTTGGGTTATTCATGAAAGC 57.923 39.130 13.09 13.62 43.56 3.51
2527 2572 5.072823 CGTCACTACATTTGACATGTTTCG 58.927 41.667 0.00 0.00 43.09 3.46
2532 2577 5.705441 ACTACATTTGACATGTTTCGGTGAT 59.295 36.000 0.00 0.00 33.76 3.06
2552 2597 8.076178 CGGTGATTGACTAAAACTCAGAATTTT 58.924 33.333 0.00 0.00 33.85 1.82
2553 2598 9.399403 GGTGATTGACTAAAACTCAGAATTTTC 57.601 33.333 0.00 0.00 31.79 2.29
2575 4833 8.894409 TTTCTACTTCAAATCGCATATTGTTG 57.106 30.769 0.00 0.00 0.00 3.33
2669 4927 4.013728 TGAGAATCGTTTGGGGTTAATGG 58.986 43.478 0.00 0.00 38.61 3.16
2678 4936 3.080300 TGGGGTTAATGGTAACTGCAG 57.920 47.619 13.48 13.48 39.73 4.41
2729 4988 3.571590 ACTTGTTTGCTCCCCATGTTTA 58.428 40.909 0.00 0.00 0.00 2.01
2780 5039 0.681175 GGTTGAGGTTTTGCATGCCT 59.319 50.000 16.68 3.85 34.93 4.75
2789 5048 0.675083 TTTGCATGCCTGTGAGTTGG 59.325 50.000 16.68 0.00 0.00 3.77
2794 5053 3.042560 GCCTGTGAGTTGGCCAAC 58.957 61.111 36.62 36.62 43.11 3.77
2890 5149 1.347050 CCAATGTTTTGGCCATGACCA 59.653 47.619 6.09 0.00 45.71 4.02
2920 5179 2.191786 TAGGGTGGACATTGGTGGCG 62.192 60.000 0.00 0.00 32.55 5.69
2925 5184 0.037447 TGGACATTGGTGGCGATTCA 59.963 50.000 0.00 0.00 32.55 2.57
2960 5237 7.741198 TGAACTCATTTTTCTTTTGCAAACTG 58.259 30.769 12.39 8.17 0.00 3.16
2964 5241 8.567104 ACTCATTTTTCTTTTGCAAACTGTTTT 58.433 25.926 12.39 0.00 0.00 2.43
2994 5271 4.702131 GCATGTGGAACCTTTGTATCTCTT 59.298 41.667 0.00 0.00 34.36 2.85
3111 5388 1.001860 AGCTGACTTCTGCTGGAGAAC 59.998 52.381 7.58 0.28 47.00 3.01
3136 5413 7.876582 ACCAAGGTAGTAACTGAAGAATTGTAC 59.123 37.037 0.00 0.00 0.00 2.90
3140 5417 9.531158 AGGTAGTAACTGAAGAATTGTACTAGT 57.469 33.333 0.00 0.00 0.00 2.57
3188 5465 1.194121 GGAATGTGCAAAGGGCCCTT 61.194 55.000 32.48 32.48 43.89 3.95
3189 5466 0.037046 GAATGTGCAAAGGGCCCTTG 60.037 55.000 37.80 28.86 43.89 3.61
3190 5467 0.763986 AATGTGCAAAGGGCCCTTGT 60.764 50.000 37.80 23.46 43.89 3.16
3191 5468 0.763986 ATGTGCAAAGGGCCCTTGTT 60.764 50.000 37.80 20.93 43.89 2.83
3192 5469 1.069596 GTGCAAAGGGCCCTTGTTG 59.930 57.895 37.80 31.21 43.89 3.33
3193 5470 1.382420 TGCAAAGGGCCCTTGTTGT 60.382 52.632 37.80 19.69 43.89 3.32
3194 5471 1.069596 GCAAAGGGCCCTTGTTGTG 59.930 57.895 37.80 30.13 36.26 3.33
3195 5472 1.685355 GCAAAGGGCCCTTGTTGTGT 61.685 55.000 37.80 18.45 36.26 3.72
3196 5473 0.829990 CAAAGGGCCCTTGTTGTGTT 59.170 50.000 37.80 17.63 36.26 3.32
3197 5474 1.209261 CAAAGGGCCCTTGTTGTGTTT 59.791 47.619 37.80 16.81 36.26 2.83
3198 5475 1.119684 AAGGGCCCTTGTTGTGTTTC 58.880 50.000 36.80 0.00 34.60 2.78
3199 5476 0.032615 AGGGCCCTTGTTGTGTTTCA 60.033 50.000 22.28 0.00 0.00 2.69
3200 5477 0.389025 GGGCCCTTGTTGTGTTTCAG 59.611 55.000 17.04 0.00 0.00 3.02
3201 5478 1.398692 GGCCCTTGTTGTGTTTCAGA 58.601 50.000 0.00 0.00 0.00 3.27
3202 5479 1.338020 GGCCCTTGTTGTGTTTCAGAG 59.662 52.381 0.00 0.00 0.00 3.35
3203 5480 2.297701 GCCCTTGTTGTGTTTCAGAGA 58.702 47.619 0.00 0.00 0.00 3.10
3204 5481 2.033424 GCCCTTGTTGTGTTTCAGAGAC 59.967 50.000 0.00 0.00 0.00 3.36
3205 5482 2.287915 CCCTTGTTGTGTTTCAGAGACG 59.712 50.000 0.00 0.00 0.00 4.18
3206 5483 3.194861 CCTTGTTGTGTTTCAGAGACGA 58.805 45.455 0.00 0.00 0.00 4.20
3207 5484 3.809832 CCTTGTTGTGTTTCAGAGACGAT 59.190 43.478 0.00 0.00 0.00 3.73
3208 5485 4.319046 CCTTGTTGTGTTTCAGAGACGATG 60.319 45.833 0.00 0.00 0.00 3.84
3209 5486 4.053469 TGTTGTGTTTCAGAGACGATGA 57.947 40.909 0.00 0.00 0.00 2.92
3210 5487 4.051237 TGTTGTGTTTCAGAGACGATGAG 58.949 43.478 0.00 0.00 0.00 2.90
3211 5488 4.202111 TGTTGTGTTTCAGAGACGATGAGA 60.202 41.667 0.00 0.00 0.00 3.27
3212 5489 4.790765 TGTGTTTCAGAGACGATGAGAT 57.209 40.909 0.00 0.00 0.00 2.75
3213 5490 4.738124 TGTGTTTCAGAGACGATGAGATC 58.262 43.478 0.00 0.00 0.00 2.75
3214 5491 4.460731 TGTGTTTCAGAGACGATGAGATCT 59.539 41.667 0.00 0.00 0.00 2.75
3215 5492 5.648092 TGTGTTTCAGAGACGATGAGATCTA 59.352 40.000 0.00 0.00 0.00 1.98
3216 5493 5.968848 GTGTTTCAGAGACGATGAGATCTAC 59.031 44.000 0.00 0.00 0.00 2.59
3217 5494 5.648092 TGTTTCAGAGACGATGAGATCTACA 59.352 40.000 0.00 0.00 0.00 2.74
3218 5495 6.319911 TGTTTCAGAGACGATGAGATCTACAT 59.680 38.462 0.00 1.02 0.00 2.29
3219 5496 7.499232 TGTTTCAGAGACGATGAGATCTACATA 59.501 37.037 0.00 0.00 0.00 2.29
3220 5497 7.665561 TTCAGAGACGATGAGATCTACATAG 57.334 40.000 0.00 4.67 0.00 2.23
3221 5498 6.764379 TCAGAGACGATGAGATCTACATAGT 58.236 40.000 15.44 15.44 36.59 2.12
3222 5499 6.648725 TCAGAGACGATGAGATCTACATAGTG 59.351 42.308 18.39 10.34 34.74 2.74
3223 5500 6.648725 CAGAGACGATGAGATCTACATAGTGA 59.351 42.308 18.39 0.00 34.74 3.41
3224 5501 6.873605 AGAGACGATGAGATCTACATAGTGAG 59.126 42.308 18.39 8.05 34.74 3.51
3225 5502 5.411361 AGACGATGAGATCTACATAGTGAGC 59.589 44.000 18.39 9.55 34.74 4.26
3226 5503 5.312895 ACGATGAGATCTACATAGTGAGCT 58.687 41.667 15.04 0.00 33.72 4.09
3227 5504 5.767665 ACGATGAGATCTACATAGTGAGCTT 59.232 40.000 15.04 0.00 33.72 3.74
3228 5505 6.937465 ACGATGAGATCTACATAGTGAGCTTA 59.063 38.462 15.04 0.00 33.72 3.09
3229 5506 7.609918 ACGATGAGATCTACATAGTGAGCTTAT 59.390 37.037 15.04 0.00 33.72 1.73
3230 5507 7.909641 CGATGAGATCTACATAGTGAGCTTATG 59.090 40.741 0.00 2.90 27.76 1.90
3231 5508 7.459795 TGAGATCTACATAGTGAGCTTATGG 57.540 40.000 8.41 0.00 0.00 2.74
3232 5509 7.234355 TGAGATCTACATAGTGAGCTTATGGA 58.766 38.462 8.41 0.00 0.00 3.41
3233 5510 7.892771 TGAGATCTACATAGTGAGCTTATGGAT 59.107 37.037 8.41 3.22 0.00 3.41
3234 5511 9.402320 GAGATCTACATAGTGAGCTTATGGATA 57.598 37.037 8.41 0.00 0.00 2.59
3235 5512 9.184523 AGATCTACATAGTGAGCTTATGGATAC 57.815 37.037 8.41 0.00 0.00 2.24
3236 5513 9.184523 GATCTACATAGTGAGCTTATGGATACT 57.815 37.037 8.41 0.00 37.61 2.12
3237 5514 8.941995 TCTACATAGTGAGCTTATGGATACTT 57.058 34.615 8.41 0.00 37.61 2.24
3238 5515 9.015367 TCTACATAGTGAGCTTATGGATACTTC 57.985 37.037 8.41 0.00 37.61 3.01
3239 5516 7.847711 ACATAGTGAGCTTATGGATACTTCT 57.152 36.000 8.41 0.00 37.61 2.85
3240 5517 8.256356 ACATAGTGAGCTTATGGATACTTCTT 57.744 34.615 8.41 0.00 37.61 2.52
3241 5518 8.709308 ACATAGTGAGCTTATGGATACTTCTTT 58.291 33.333 8.41 0.00 37.61 2.52
3242 5519 9.553064 CATAGTGAGCTTATGGATACTTCTTTT 57.447 33.333 0.00 0.00 37.61 2.27
3245 5522 9.959721 AGTGAGCTTATGGATACTTCTTTTAAA 57.040 29.630 0.00 0.00 37.61 1.52
3246 5523 9.989869 GTGAGCTTATGGATACTTCTTTTAAAC 57.010 33.333 0.00 0.00 37.61 2.01
3247 5524 9.959721 TGAGCTTATGGATACTTCTTTTAAACT 57.040 29.630 0.00 0.00 37.61 2.66
3264 5541 9.946165 CTTTTAAACTTTAGACCTTTAGTGTGG 57.054 33.333 0.00 0.00 0.00 4.17
3265 5542 8.454570 TTTAAACTTTAGACCTTTAGTGTGGG 57.545 34.615 0.00 0.00 0.00 4.61
3266 5543 5.641789 AACTTTAGACCTTTAGTGTGGGT 57.358 39.130 0.00 0.00 35.89 4.51
3267 5544 5.641789 ACTTTAGACCTTTAGTGTGGGTT 57.358 39.130 0.00 0.00 33.01 4.11
3268 5545 5.618236 ACTTTAGACCTTTAGTGTGGGTTC 58.382 41.667 0.00 0.00 33.01 3.62
3269 5546 5.368816 ACTTTAGACCTTTAGTGTGGGTTCT 59.631 40.000 0.00 0.00 33.01 3.01
3270 5547 3.771577 AGACCTTTAGTGTGGGTTCTG 57.228 47.619 0.00 0.00 33.01 3.02
3271 5548 3.046374 AGACCTTTAGTGTGGGTTCTGT 58.954 45.455 0.00 0.00 33.01 3.41
3272 5549 4.228824 AGACCTTTAGTGTGGGTTCTGTA 58.771 43.478 0.00 0.00 33.01 2.74
3273 5550 4.283722 AGACCTTTAGTGTGGGTTCTGTAG 59.716 45.833 0.00 0.00 33.01 2.74
3274 5551 4.228824 ACCTTTAGTGTGGGTTCTGTAGA 58.771 43.478 0.00 0.00 0.00 2.59
3275 5552 4.657039 ACCTTTAGTGTGGGTTCTGTAGAA 59.343 41.667 0.00 0.00 0.00 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 4.727507 TTTCTAGCAGATGGAGTGAGAC 57.272 45.455 0.00 0.00 0.00 3.36
61 62 5.599999 ACCAGACGAATGCTTTAGATACT 57.400 39.130 0.00 0.00 0.00 2.12
99 100 7.503230 ACTCTTGTTCTACCTACTAATCCTAGC 59.497 40.741 0.00 0.00 0.00 3.42
267 268 8.739972 ACAGGTTACAAAATATCACTCAAATCC 58.260 33.333 0.00 0.00 0.00 3.01
380 381 4.573021 TGTGGAATGAGATTGACCATGA 57.427 40.909 0.00 0.00 33.19 3.07
413 414 5.530915 TGCCTTCTTCAAAATATATCCGTGG 59.469 40.000 0.00 0.00 0.00 4.94
483 484 1.062044 ACCTCTCCTTACATCCTCCCC 60.062 57.143 0.00 0.00 0.00 4.81
537 538 2.093973 ACCAGATCAACCTCATCGACAC 60.094 50.000 0.00 0.00 0.00 3.67
598 599 3.290710 CTGGATTTGATTTGACCGGGAT 58.709 45.455 6.32 0.00 0.00 3.85
625 638 2.182842 GGCGATGCTGGTGGATGAC 61.183 63.158 0.00 0.00 0.00 3.06
626 639 1.048160 TAGGCGATGCTGGTGGATGA 61.048 55.000 0.00 0.00 0.00 2.92
627 640 0.882042 GTAGGCGATGCTGGTGGATG 60.882 60.000 0.00 0.00 0.00 3.51
628 641 1.447643 GTAGGCGATGCTGGTGGAT 59.552 57.895 0.00 0.00 0.00 3.41
629 642 2.900273 GTAGGCGATGCTGGTGGA 59.100 61.111 0.00 0.00 0.00 4.02
630 643 2.586079 CGTAGGCGATGCTGGTGG 60.586 66.667 0.00 0.00 41.33 4.61
631 644 2.494445 TCGTAGGCGATGCTGGTG 59.506 61.111 0.00 0.00 42.81 4.17
641 654 1.687297 CTTCCCCCTCCTTCGTAGGC 61.687 65.000 2.65 0.00 41.69 3.93
824 843 0.616679 TCCCGAACCCCCTAGAACAG 60.617 60.000 0.00 0.00 0.00 3.16
837 856 0.249996 GTGGGTCGAAAACTCCCGAA 60.250 55.000 3.79 0.00 43.75 4.30
849 868 1.553690 ATTCCAGAGGTGGTGGGTCG 61.554 60.000 0.00 0.00 45.28 4.79
850 869 0.035056 CATTCCAGAGGTGGTGGGTC 60.035 60.000 0.00 0.00 45.28 4.46
876 896 2.418368 TGTAAGGAGCCATTCGCAAT 57.582 45.000 0.00 0.00 41.38 3.56
879 899 0.947244 CCATGTAAGGAGCCATTCGC 59.053 55.000 0.00 0.00 37.98 4.70
978 998 3.954218 CTGGTCGTCGTCGTCGTCG 62.954 68.421 14.18 14.18 46.06 5.12
979 999 2.202146 CTGGTCGTCGTCGTCGTC 60.202 66.667 11.41 6.21 38.33 4.20
980 1000 3.720193 CCTGGTCGTCGTCGTCGT 61.720 66.667 11.41 0.00 38.33 4.34
981 1001 3.364249 CTCCTGGTCGTCGTCGTCG 62.364 68.421 5.50 5.50 38.33 5.12
982 1002 1.367599 ATCTCCTGGTCGTCGTCGTC 61.368 60.000 1.33 0.00 38.33 4.20
983 1003 1.376942 ATCTCCTGGTCGTCGTCGT 60.377 57.895 1.33 0.00 38.33 4.34
984 1004 1.062685 CATCTCCTGGTCGTCGTCG 59.937 63.158 0.00 0.00 38.55 5.12
1123 1143 1.550374 AGGAAGAGAGGGGGAGGGA 60.550 63.158 0.00 0.00 0.00 4.20
1124 1144 1.074850 GAGGAAGAGAGGGGGAGGG 60.075 68.421 0.00 0.00 0.00 4.30
1161 1182 0.729140 CCAAACGGATGCGAAACAGC 60.729 55.000 15.49 0.00 37.71 4.40
1162 1183 0.871722 TCCAAACGGATGCGAAACAG 59.128 50.000 15.49 0.00 0.00 3.16
1163 1184 1.529226 ATCCAAACGGATGCGAAACA 58.471 45.000 15.49 0.00 41.99 2.83
1171 1192 5.097742 TCTTGTATCACATCCAAACGGAT 57.902 39.130 0.00 0.00 44.60 4.18
1172 1193 4.503910 CTCTTGTATCACATCCAAACGGA 58.496 43.478 0.00 0.00 36.85 4.69
1173 1194 3.063997 GCTCTTGTATCACATCCAAACGG 59.936 47.826 0.00 0.00 0.00 4.44
1174 1195 3.684305 TGCTCTTGTATCACATCCAAACG 59.316 43.478 0.00 0.00 0.00 3.60
1175 1196 5.048782 TGTTGCTCTTGTATCACATCCAAAC 60.049 40.000 0.00 0.00 0.00 2.93
1176 1197 5.069318 TGTTGCTCTTGTATCACATCCAAA 58.931 37.500 0.00 0.00 0.00 3.28
1177 1198 4.650734 TGTTGCTCTTGTATCACATCCAA 58.349 39.130 0.00 0.00 0.00 3.53
1178 1199 4.284829 TGTTGCTCTTGTATCACATCCA 57.715 40.909 0.00 0.00 0.00 3.41
1179 1200 5.824904 ATTGTTGCTCTTGTATCACATCC 57.175 39.130 0.00 0.00 0.00 3.51
1180 1201 7.086376 ACAAATTGTTGCTCTTGTATCACATC 58.914 34.615 0.00 0.00 38.39 3.06
1181 1202 6.985117 ACAAATTGTTGCTCTTGTATCACAT 58.015 32.000 0.00 0.00 38.39 3.21
1182 1203 6.039159 TGACAAATTGTTGCTCTTGTATCACA 59.961 34.615 0.00 0.00 38.39 3.58
1183 1204 6.437928 TGACAAATTGTTGCTCTTGTATCAC 58.562 36.000 0.00 0.00 38.39 3.06
1184 1205 6.631971 TGACAAATTGTTGCTCTTGTATCA 57.368 33.333 0.00 0.00 38.39 2.15
1185 1206 7.141363 ACTTGACAAATTGTTGCTCTTGTATC 58.859 34.615 0.00 0.00 38.39 2.24
1186 1207 7.013655 AGACTTGACAAATTGTTGCTCTTGTAT 59.986 33.333 0.00 0.00 38.39 2.29
1187 1208 6.318648 AGACTTGACAAATTGTTGCTCTTGTA 59.681 34.615 0.00 0.00 38.39 2.41
1188 1209 5.126061 AGACTTGACAAATTGTTGCTCTTGT 59.874 36.000 0.00 0.00 38.39 3.16
1189 1210 5.457799 CAGACTTGACAAATTGTTGCTCTTG 59.542 40.000 0.00 0.00 38.39 3.02
1190 1211 5.450965 CCAGACTTGACAAATTGTTGCTCTT 60.451 40.000 0.00 0.00 38.39 2.85
1191 1212 4.037208 CCAGACTTGACAAATTGTTGCTCT 59.963 41.667 0.00 0.00 38.39 4.09
1192 1213 4.293415 CCAGACTTGACAAATTGTTGCTC 58.707 43.478 0.00 0.00 38.39 4.26
1193 1214 3.068590 CCCAGACTTGACAAATTGTTGCT 59.931 43.478 0.00 0.00 38.39 3.91
1194 1215 3.383761 CCCAGACTTGACAAATTGTTGC 58.616 45.455 0.00 0.00 38.39 4.17
1195 1216 3.636300 TCCCCAGACTTGACAAATTGTTG 59.364 43.478 0.00 0.00 40.84 3.33
1196 1217 3.909732 TCCCCAGACTTGACAAATTGTT 58.090 40.909 0.00 0.00 0.00 2.83
1197 1218 3.593442 TCCCCAGACTTGACAAATTGT 57.407 42.857 0.00 0.00 0.00 2.71
1209 1230 1.278127 TCCTGTCGAAATTCCCCAGAC 59.722 52.381 7.79 1.16 0.00 3.51
1222 1243 0.888619 TCAGCACCTACTTCCTGTCG 59.111 55.000 0.00 0.00 0.00 4.35
1245 1266 3.365364 GCACCTGAATAAACAGTCTGCAC 60.365 47.826 0.00 0.00 38.45 4.57
1288 1309 2.290093 GGAGGAACTACCACGTCTATCG 59.710 54.545 0.00 0.00 41.55 2.92
1295 1316 0.320374 TGCAAGGAGGAACTACCACG 59.680 55.000 0.00 0.00 43.28 4.94
1315 1336 7.280769 GCGTGAAAATTCATTCAAAACCTAAC 58.719 34.615 0.00 0.00 40.76 2.34
1345 1366 7.467623 CAACAGATTAACTAGGAAGCAATCAC 58.532 38.462 0.00 0.00 33.16 3.06
1347 1368 6.094048 TGCAACAGATTAACTAGGAAGCAATC 59.906 38.462 0.00 0.00 31.87 2.67
1381 1402 5.935206 TGCGGTCTTGACACAAAATATTAGA 59.065 36.000 3.08 0.00 0.00 2.10
1382 1403 6.176975 TGCGGTCTTGACACAAAATATTAG 57.823 37.500 3.08 0.00 0.00 1.73
1384 1405 5.643379 ATGCGGTCTTGACACAAAATATT 57.357 34.783 3.08 0.00 0.00 1.28
1388 1409 2.685388 TCAATGCGGTCTTGACACAAAA 59.315 40.909 3.08 0.00 0.00 2.44
1393 1429 1.960417 TGTTCAATGCGGTCTTGACA 58.040 45.000 3.08 0.00 32.57 3.58
1399 1435 2.986479 GGACAAAATGTTCAATGCGGTC 59.014 45.455 0.00 0.00 0.00 4.79
1417 1453 6.256757 GCTCTCACTACTTGATAAATGTGGAC 59.743 42.308 0.00 0.00 32.17 4.02
1420 1456 7.840342 AAGCTCTCACTACTTGATAAATGTG 57.160 36.000 0.00 0.00 32.17 3.21
1435 1480 3.192001 TCAATGCCAATCAAAGCTCTCAC 59.808 43.478 0.00 0.00 0.00 3.51
1471 1516 3.435275 TCTGAACACTCCAGAGCAGTAT 58.565 45.455 0.00 0.00 35.89 2.12
1555 1600 6.261603 CCACTAGCAATCTGATTGATTAAGCA 59.738 38.462 29.34 10.50 43.00 3.91
1562 1607 5.046376 TGACTTCCACTAGCAATCTGATTGA 60.046 40.000 29.34 12.04 42.83 2.57
1565 1610 4.383552 GGTGACTTCCACTAGCAATCTGAT 60.384 45.833 0.00 0.00 45.03 2.90
1571 1616 1.347707 CAGGGTGACTTCCACTAGCAA 59.652 52.381 0.00 0.00 45.03 3.91
1599 1644 5.825679 CGATATTTTGGGGGACAGAACATTA 59.174 40.000 0.00 0.00 0.00 1.90
1614 1659 7.970384 TGTAGGCTTGTAACTTCGATATTTTG 58.030 34.615 0.00 0.00 0.00 2.44
1675 1720 8.432805 AGACCCCATAGTCAAAATTATACTGAG 58.567 37.037 0.00 0.00 39.34 3.35
1679 1724 7.773690 ACACAGACCCCATAGTCAAAATTATAC 59.226 37.037 0.00 0.00 39.34 1.47
1724 1769 1.004277 ACCCCGTGTTAGCACAATGAT 59.996 47.619 10.49 0.00 45.50 2.45
1725 1770 0.398696 ACCCCGTGTTAGCACAATGA 59.601 50.000 10.49 0.00 45.50 2.57
1740 1785 1.328279 CCTGTGACAAAAAGGACCCC 58.672 55.000 0.00 0.00 32.43 4.95
1893 1938 6.947464 AGTTGTTGTAGCACCTAGAATATGT 58.053 36.000 0.00 0.00 0.00 2.29
1975 2020 3.438781 TGTAAATGACATGAAGTTCGGGC 59.561 43.478 0.00 0.00 31.20 6.13
1976 2021 4.454161 TGTGTAAATGACATGAAGTTCGGG 59.546 41.667 0.00 0.00 41.14 5.14
1979 2024 7.189693 TGACTGTGTAAATGACATGAAGTTC 57.810 36.000 0.00 0.00 41.14 3.01
2028 2073 3.416156 AGCTCTTTGGAAAAGCTACAGG 58.584 45.455 0.00 0.00 44.28 4.00
2086 2131 3.826729 AGGAAAAGTACCTTCAACCATGC 59.173 43.478 7.42 0.00 33.55 4.06
2319 2364 3.821748 AGAGGTGTCCCAAAGAAGAAAC 58.178 45.455 0.00 0.00 0.00 2.78
2333 2378 6.379988 ACCAAACAAACAAGAATAAGAGGTGT 59.620 34.615 0.00 0.00 0.00 4.16
2436 2481 6.862209 AGTGTTTAGTTTGCTTTCAATCACA 58.138 32.000 0.00 0.00 31.33 3.58
2457 2502 6.757897 TTCATGAATAACCCAAAGCTAGTG 57.242 37.500 3.38 0.00 0.00 2.74
2472 2517 3.159472 TGACCAAGCAGCTTTCATGAAT 58.841 40.909 9.40 0.00 0.00 2.57
2483 2528 3.181513 CGAAGTGATGATTGACCAAGCAG 60.182 47.826 6.82 0.00 40.26 4.24
2527 2572 9.399403 GAAAATTCTGAGTTTTAGTCAATCACC 57.601 33.333 10.35 0.00 0.00 4.02
2552 2597 7.609760 ACAACAATATGCGATTTGAAGTAGA 57.390 32.000 0.00 0.00 0.00 2.59
2553 2598 9.935682 AATACAACAATATGCGATTTGAAGTAG 57.064 29.630 0.00 0.00 0.00 2.57
2554 2599 9.715123 CAATACAACAATATGCGATTTGAAGTA 57.285 29.630 0.00 3.12 0.00 2.24
2559 4817 7.648908 ACATCCAATACAACAATATGCGATTTG 59.351 33.333 0.00 0.00 0.00 2.32
2564 4822 5.008514 TCCACATCCAATACAACAATATGCG 59.991 40.000 0.00 0.00 0.00 4.73
2669 4927 5.238583 ACTAGTTCCACATTCTGCAGTTAC 58.761 41.667 14.67 1.98 0.00 2.50
2678 4936 7.708752 CCTGAGATCTTTACTAGTTCCACATTC 59.291 40.741 0.00 0.00 0.00 2.67
2780 5039 1.039068 CCAATGTTGGCCAACTCACA 58.961 50.000 40.40 27.04 42.21 3.58
2794 5053 8.273780 ACTCTAGTTCATTTTTCTAGCCAATG 57.726 34.615 0.00 0.00 33.41 2.82
2854 5113 4.419282 ACATTGGTCCTTGTTTGGATGAT 58.581 39.130 0.00 0.00 38.52 2.45
2895 5154 1.211949 CCAATGTCCACCCTACCGAAT 59.788 52.381 0.00 0.00 0.00 3.34
2907 5166 1.173043 TTGAATCGCCACCAATGTCC 58.827 50.000 0.00 0.00 0.00 4.02
2920 5179 7.396540 AATGAGTTCAGGGTATGTTTGAATC 57.603 36.000 0.00 0.00 33.82 2.52
2925 5184 7.839680 AGAAAAATGAGTTCAGGGTATGTTT 57.160 32.000 0.00 0.00 0.00 2.83
2964 5241 1.786937 AGGTTCCACATGCCAACAAA 58.213 45.000 0.00 0.00 0.00 2.83
2972 5249 6.824305 AAAGAGATACAAAGGTTCCACATG 57.176 37.500 0.00 0.00 0.00 3.21
2973 5250 7.839680 AAAAAGAGATACAAAGGTTCCACAT 57.160 32.000 0.00 0.00 0.00 3.21
2994 5271 7.256494 AGCAATCCCTCCATTTGAATAAAAA 57.744 32.000 0.00 0.00 0.00 1.94
2998 5275 5.517924 TGAAGCAATCCCTCCATTTGAATA 58.482 37.500 0.00 0.00 0.00 1.75
2999 5276 4.355549 TGAAGCAATCCCTCCATTTGAAT 58.644 39.130 0.00 0.00 0.00 2.57
3006 5283 4.018506 TGTTTAGATGAAGCAATCCCTCCA 60.019 41.667 0.00 0.00 0.00 3.86
3047 5324 4.710865 TGCCAAGATTTGCTATGAAATGGA 59.289 37.500 0.00 0.00 0.00 3.41
3048 5325 5.013568 TGCCAAGATTTGCTATGAAATGG 57.986 39.130 0.00 0.00 0.00 3.16
3053 5330 4.577693 GTGAGATGCCAAGATTTGCTATGA 59.422 41.667 0.00 0.00 0.00 2.15
3061 5338 2.494870 GCTTTGGTGAGATGCCAAGATT 59.505 45.455 0.00 0.00 45.47 2.40
3090 5367 2.222227 TCTCCAGCAGAAGTCAGCTA 57.778 50.000 0.00 0.00 36.54 3.32
3111 5388 8.095169 AGTACAATTCTTCAGTTACTACCTTGG 58.905 37.037 0.00 0.00 0.00 3.61
3136 5413 4.246458 GCCACCTGAGTCTTGTTAACTAG 58.754 47.826 10.39 10.39 0.00 2.57
3138 5415 2.548067 CGCCACCTGAGTCTTGTTAACT 60.548 50.000 7.22 0.00 0.00 2.24
3140 5417 1.270625 CCGCCACCTGAGTCTTGTTAA 60.271 52.381 0.00 0.00 0.00 2.01
3141 5418 0.320374 CCGCCACCTGAGTCTTGTTA 59.680 55.000 0.00 0.00 0.00 2.41
3142 5419 1.071471 CCGCCACCTGAGTCTTGTT 59.929 57.895 0.00 0.00 0.00 2.83
3143 5420 2.743718 CCGCCACCTGAGTCTTGT 59.256 61.111 0.00 0.00 0.00 3.16
3166 5443 0.899717 GGCCCTTTGCACATTCCAGA 60.900 55.000 0.00 0.00 43.89 3.86
3188 5465 4.051237 CTCATCGTCTCTGAAACACAACA 58.949 43.478 0.00 0.00 0.00 3.33
3189 5466 4.299155 TCTCATCGTCTCTGAAACACAAC 58.701 43.478 0.00 0.00 0.00 3.32
3190 5467 4.584327 TCTCATCGTCTCTGAAACACAA 57.416 40.909 0.00 0.00 0.00 3.33
3191 5468 4.460731 AGATCTCATCGTCTCTGAAACACA 59.539 41.667 0.00 0.00 0.00 3.72
3192 5469 4.992688 AGATCTCATCGTCTCTGAAACAC 58.007 43.478 0.00 0.00 0.00 3.32
3193 5470 5.648092 TGTAGATCTCATCGTCTCTGAAACA 59.352 40.000 0.00 0.00 0.00 2.83
3194 5471 6.125327 TGTAGATCTCATCGTCTCTGAAAC 57.875 41.667 0.00 0.00 0.00 2.78
3195 5472 6.951062 ATGTAGATCTCATCGTCTCTGAAA 57.049 37.500 0.00 0.00 0.00 2.69
3196 5473 7.172361 CACTATGTAGATCTCATCGTCTCTGAA 59.828 40.741 0.00 0.00 0.00 3.02
3197 5474 6.648725 CACTATGTAGATCTCATCGTCTCTGA 59.351 42.308 0.00 0.00 0.00 3.27
3198 5475 6.648725 TCACTATGTAGATCTCATCGTCTCTG 59.351 42.308 0.00 0.00 0.00 3.35
3199 5476 6.764379 TCACTATGTAGATCTCATCGTCTCT 58.236 40.000 0.00 0.00 0.00 3.10
3200 5477 6.402118 GCTCACTATGTAGATCTCATCGTCTC 60.402 46.154 0.00 0.00 0.00 3.36
3201 5478 5.411361 GCTCACTATGTAGATCTCATCGTCT 59.589 44.000 0.00 0.00 0.00 4.18
3202 5479 5.411361 AGCTCACTATGTAGATCTCATCGTC 59.589 44.000 0.00 0.00 0.00 4.20
3203 5480 5.312895 AGCTCACTATGTAGATCTCATCGT 58.687 41.667 0.00 2.77 0.00 3.73
3204 5481 5.878332 AGCTCACTATGTAGATCTCATCG 57.122 43.478 0.00 2.15 0.00 3.84
3205 5482 8.190122 CCATAAGCTCACTATGTAGATCTCATC 58.810 40.741 0.00 0.00 0.00 2.92
3206 5483 7.892771 TCCATAAGCTCACTATGTAGATCTCAT 59.107 37.037 0.00 5.73 0.00 2.90
3207 5484 7.234355 TCCATAAGCTCACTATGTAGATCTCA 58.766 38.462 0.00 0.00 0.00 3.27
3208 5485 7.695480 TCCATAAGCTCACTATGTAGATCTC 57.305 40.000 0.00 0.00 0.00 2.75
3209 5486 9.184523 GTATCCATAAGCTCACTATGTAGATCT 57.815 37.037 0.00 0.00 0.00 2.75
3210 5487 9.184523 AGTATCCATAAGCTCACTATGTAGATC 57.815 37.037 3.78 0.00 0.00 2.75
3211 5488 9.540538 AAGTATCCATAAGCTCACTATGTAGAT 57.459 33.333 3.78 3.32 0.00 1.98
3212 5489 8.941995 AAGTATCCATAAGCTCACTATGTAGA 57.058 34.615 3.78 0.00 0.00 2.59
3213 5490 9.019656 AGAAGTATCCATAAGCTCACTATGTAG 57.980 37.037 3.78 0.00 0.00 2.74
3214 5491 8.941995 AGAAGTATCCATAAGCTCACTATGTA 57.058 34.615 3.78 0.00 0.00 2.29
3215 5492 7.847711 AGAAGTATCCATAAGCTCACTATGT 57.152 36.000 3.78 0.00 0.00 2.29
3216 5493 9.553064 AAAAGAAGTATCCATAAGCTCACTATG 57.447 33.333 0.00 0.00 0.00 2.23
3219 5496 9.959721 TTTAAAAGAAGTATCCATAAGCTCACT 57.040 29.630 0.00 0.00 0.00 3.41
3220 5497 9.989869 GTTTAAAAGAAGTATCCATAAGCTCAC 57.010 33.333 0.00 0.00 0.00 3.51
3221 5498 9.959721 AGTTTAAAAGAAGTATCCATAAGCTCA 57.040 29.630 0.00 0.00 0.00 4.26
3238 5515 9.946165 CCACACTAAAGGTCTAAAGTTTAAAAG 57.054 33.333 0.00 0.00 0.00 2.27
3239 5516 8.905850 CCCACACTAAAGGTCTAAAGTTTAAAA 58.094 33.333 0.00 0.00 0.00 1.52
3240 5517 8.054572 ACCCACACTAAAGGTCTAAAGTTTAAA 58.945 33.333 0.00 0.00 0.00 1.52
3241 5518 7.576403 ACCCACACTAAAGGTCTAAAGTTTAA 58.424 34.615 0.00 0.00 0.00 1.52
3242 5519 7.140522 ACCCACACTAAAGGTCTAAAGTTTA 57.859 36.000 0.00 0.00 0.00 2.01
3243 5520 6.009908 ACCCACACTAAAGGTCTAAAGTTT 57.990 37.500 0.00 0.00 0.00 2.66
3244 5521 5.641789 ACCCACACTAAAGGTCTAAAGTT 57.358 39.130 0.00 0.00 0.00 2.66
3245 5522 5.368816 AGAACCCACACTAAAGGTCTAAAGT 59.631 40.000 0.00 0.00 32.00 2.66
3246 5523 5.701290 CAGAACCCACACTAAAGGTCTAAAG 59.299 44.000 0.00 0.00 32.00 1.85
3247 5524 5.131475 ACAGAACCCACACTAAAGGTCTAAA 59.869 40.000 0.00 0.00 32.00 1.85
3248 5525 4.657039 ACAGAACCCACACTAAAGGTCTAA 59.343 41.667 0.00 0.00 32.00 2.10
3249 5526 4.228824 ACAGAACCCACACTAAAGGTCTA 58.771 43.478 0.00 0.00 32.00 2.59
3250 5527 3.046374 ACAGAACCCACACTAAAGGTCT 58.954 45.455 0.00 0.00 32.00 3.85
3251 5528 3.487120 ACAGAACCCACACTAAAGGTC 57.513 47.619 0.00 0.00 32.00 3.85
3252 5529 4.228824 TCTACAGAACCCACACTAAAGGT 58.771 43.478 0.00 0.00 34.60 3.50
3253 5530 4.884668 TCTACAGAACCCACACTAAAGG 57.115 45.455 0.00 0.00 0.00 3.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.