Multiple sequence alignment - TraesCS1A01G207000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G207000 chr1A 100.000 2793 0 0 1 2793 369082110 369084902 0.000000e+00 5158.0
1 TraesCS1A01G207000 chr1D 96.667 930 25 2 849 1773 296359026 296359954 0.000000e+00 1541.0
2 TraesCS1A01G207000 chr1D 89.948 965 60 14 1837 2793 296359968 296360903 0.000000e+00 1210.0
3 TraesCS1A01G207000 chr1B 92.791 971 35 5 856 1816 397813571 397814516 0.000000e+00 1373.0
4 TraesCS1A01G207000 chr1B 92.285 674 38 7 2120 2793 397814873 397815532 0.000000e+00 944.0
5 TraesCS1A01G207000 chr1B 89.796 196 18 2 328 522 397812261 397812455 1.660000e-62 250.0
6 TraesCS1A01G207000 chr6B 82.979 94 13 3 62 154 519164271 519164362 6.410000e-12 82.4
7 TraesCS1A01G207000 chr6B 85.000 60 7 1 62 121 192866496 192866439 3.000000e-05 60.2
8 TraesCS1A01G207000 chr6D 97.059 34 1 0 62 95 200865815 200865782 1.080000e-04 58.4
9 TraesCS1A01G207000 chr6D 83.333 60 8 1 62 121 106052610 106052553 1.000000e-03 54.7
10 TraesCS1A01G207000 chr6A 97.059 34 1 0 62 95 284815568 284815601 1.080000e-04 58.4
11 TraesCS1A01G207000 chr6A 84.746 59 5 3 62 119 129318415 129318360 3.890000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G207000 chr1A 369082110 369084902 2792 False 5158.000000 5158 100.0000 1 2793 1 chr1A.!!$F1 2792
1 TraesCS1A01G207000 chr1D 296359026 296360903 1877 False 1375.500000 1541 93.3075 849 2793 2 chr1D.!!$F1 1944
2 TraesCS1A01G207000 chr1B 397812261 397815532 3271 False 855.666667 1373 91.6240 328 2793 3 chr1B.!!$F1 2465

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
477 478 0.036765 GGATGGTGTTGCGGTAGTGA 60.037 55.0 0.0 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2331 3267 0.752658 GGCTTGGCCCCATTTACATC 59.247 55.0 0.0 0.0 44.06 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.032377 GATTCCCCAAGTGAATCATTAAGAC 57.968 40.000 7.84 0.00 44.78 3.01
26 27 5.779241 TCCCCAAGTGAATCATTAAGACT 57.221 39.130 0.00 0.00 0.00 3.24
27 28 6.139679 TCCCCAAGTGAATCATTAAGACTT 57.860 37.500 0.00 0.00 0.00 3.01
28 29 5.945784 TCCCCAAGTGAATCATTAAGACTTG 59.054 40.000 0.00 0.00 42.02 3.16
29 30 5.393461 CCCCAAGTGAATCATTAAGACTTGC 60.393 44.000 0.00 0.00 41.36 4.01
30 31 5.183713 CCCAAGTGAATCATTAAGACTTGCA 59.816 40.000 0.00 0.00 41.36 4.08
31 32 6.088824 CCAAGTGAATCATTAAGACTTGCAC 58.911 40.000 0.00 0.00 41.36 4.57
32 33 6.072286 CCAAGTGAATCATTAAGACTTGCACT 60.072 38.462 0.00 0.00 41.36 4.40
33 34 6.492007 AGTGAATCATTAAGACTTGCACTG 57.508 37.500 0.00 0.00 33.32 3.66
34 35 6.233434 AGTGAATCATTAAGACTTGCACTGA 58.767 36.000 0.00 0.00 33.32 3.41
35 36 6.883217 AGTGAATCATTAAGACTTGCACTGAT 59.117 34.615 0.00 0.00 33.32 2.90
36 37 6.965500 GTGAATCATTAAGACTTGCACTGATG 59.035 38.462 0.00 0.00 0.00 3.07
37 38 6.094464 TGAATCATTAAGACTTGCACTGATGG 59.906 38.462 0.00 0.00 0.00 3.51
38 39 5.164620 TCATTAAGACTTGCACTGATGGA 57.835 39.130 0.00 0.00 0.00 3.41
39 40 5.181009 TCATTAAGACTTGCACTGATGGAG 58.819 41.667 0.00 0.00 0.00 3.86
40 41 4.890158 TTAAGACTTGCACTGATGGAGA 57.110 40.909 0.00 0.00 0.00 3.71
41 42 3.777106 AAGACTTGCACTGATGGAGAA 57.223 42.857 0.00 0.00 0.00 2.87
42 43 3.777106 AGACTTGCACTGATGGAGAAA 57.223 42.857 0.00 0.00 0.00 2.52
43 44 4.090761 AGACTTGCACTGATGGAGAAAA 57.909 40.909 0.00 0.00 0.00 2.29
44 45 4.464008 AGACTTGCACTGATGGAGAAAAA 58.536 39.130 0.00 0.00 0.00 1.94
45 46 5.075493 AGACTTGCACTGATGGAGAAAAAT 58.925 37.500 0.00 0.00 0.00 1.82
46 47 5.048224 AGACTTGCACTGATGGAGAAAAATG 60.048 40.000 0.00 0.00 0.00 2.32
47 48 4.021719 ACTTGCACTGATGGAGAAAAATGG 60.022 41.667 0.00 0.00 0.00 3.16
48 49 2.231964 TGCACTGATGGAGAAAAATGGC 59.768 45.455 0.00 0.00 0.00 4.40
49 50 2.494870 GCACTGATGGAGAAAAATGGCT 59.505 45.455 0.00 0.00 0.00 4.75
50 51 3.056322 GCACTGATGGAGAAAAATGGCTT 60.056 43.478 0.00 0.00 0.00 4.35
51 52 4.741342 CACTGATGGAGAAAAATGGCTTC 58.259 43.478 0.00 0.00 0.00 3.86
52 53 4.219070 CACTGATGGAGAAAAATGGCTTCA 59.781 41.667 0.00 0.00 0.00 3.02
53 54 5.021458 ACTGATGGAGAAAAATGGCTTCAT 58.979 37.500 0.00 0.00 33.09 2.57
54 55 6.095860 CACTGATGGAGAAAAATGGCTTCATA 59.904 38.462 0.00 0.00 30.58 2.15
55 56 6.664816 ACTGATGGAGAAAAATGGCTTCATAA 59.335 34.615 0.00 0.00 30.58 1.90
56 57 7.178983 ACTGATGGAGAAAAATGGCTTCATAAA 59.821 33.333 0.00 0.00 30.58 1.40
57 58 7.905265 TGATGGAGAAAAATGGCTTCATAAAA 58.095 30.769 0.00 0.00 30.58 1.52
58 59 8.036575 TGATGGAGAAAAATGGCTTCATAAAAG 58.963 33.333 0.00 0.00 30.58 2.27
59 60 6.165577 TGGAGAAAAATGGCTTCATAAAAGC 58.834 36.000 1.16 1.16 42.30 3.51
60 61 6.165577 GGAGAAAAATGGCTTCATAAAAGCA 58.834 36.000 11.48 0.00 44.71 3.91
61 62 6.820152 GGAGAAAAATGGCTTCATAAAAGCAT 59.180 34.615 11.48 1.62 44.71 3.79
62 63 7.010830 GGAGAAAAATGGCTTCATAAAAGCATC 59.989 37.037 11.48 0.00 44.71 3.91
63 64 7.388437 AGAAAAATGGCTTCATAAAAGCATCA 58.612 30.769 11.48 2.31 44.71 3.07
64 65 7.879160 AGAAAAATGGCTTCATAAAAGCATCAA 59.121 29.630 11.48 0.00 44.71 2.57
65 66 7.605410 AAAATGGCTTCATAAAAGCATCAAG 57.395 32.000 11.48 0.00 44.71 3.02
66 67 4.114058 TGGCTTCATAAAAGCATCAAGC 57.886 40.909 11.48 0.00 44.71 4.01
67 68 3.451526 GGCTTCATAAAAGCATCAAGCC 58.548 45.455 11.48 4.82 46.72 4.35
68 69 3.739209 GGCTTCATAAAAGCATCAAGCCC 60.739 47.826 11.48 0.00 46.90 5.19
69 70 5.951339 GGCTTCATAAAAGCATCAAGCCCT 61.951 45.833 11.48 0.00 46.90 5.19
70 71 7.681873 GGCTTCATAAAAGCATCAAGCCCTC 62.682 48.000 11.48 0.00 46.90 4.30
81 82 2.409948 CAAGCCCTCCTTGTCTTAGG 57.590 55.000 0.00 0.00 44.74 2.69
82 83 1.909302 CAAGCCCTCCTTGTCTTAGGA 59.091 52.381 0.00 0.00 44.74 2.94
83 84 1.574263 AGCCCTCCTTGTCTTAGGAC 58.426 55.000 0.00 0.00 39.40 3.85
84 85 1.079658 AGCCCTCCTTGTCTTAGGACT 59.920 52.381 6.54 0.00 39.40 3.85
85 86 1.909986 GCCCTCCTTGTCTTAGGACTT 59.090 52.381 6.54 0.00 39.40 3.01
86 87 2.355209 GCCCTCCTTGTCTTAGGACTTG 60.355 54.545 6.54 0.00 39.40 3.16
87 88 2.237392 CCCTCCTTGTCTTAGGACTTGG 59.763 54.545 6.54 8.24 39.40 3.61
88 89 2.237392 CCTCCTTGTCTTAGGACTTGGG 59.763 54.545 6.54 5.96 39.40 4.12
89 90 3.173965 CTCCTTGTCTTAGGACTTGGGA 58.826 50.000 6.54 9.49 39.40 4.37
90 91 3.583086 CTCCTTGTCTTAGGACTTGGGAA 59.417 47.826 6.54 0.00 39.40 3.97
91 92 3.977999 TCCTTGTCTTAGGACTTGGGAAA 59.022 43.478 6.54 0.00 39.40 3.13
92 93 4.041691 TCCTTGTCTTAGGACTTGGGAAAG 59.958 45.833 6.54 0.69 39.40 2.62
93 94 4.041691 CCTTGTCTTAGGACTTGGGAAAGA 59.958 45.833 6.54 0.00 42.54 2.52
94 95 5.456186 CCTTGTCTTAGGACTTGGGAAAGAA 60.456 44.000 6.54 0.00 42.54 2.52
95 96 5.640158 TGTCTTAGGACTTGGGAAAGAAA 57.360 39.130 6.54 0.00 42.54 2.52
96 97 5.374071 TGTCTTAGGACTTGGGAAAGAAAC 58.626 41.667 6.54 0.00 42.54 2.78
97 98 4.760715 GTCTTAGGACTTGGGAAAGAAACC 59.239 45.833 0.00 0.00 39.24 3.27
98 99 2.677542 AGGACTTGGGAAAGAAACCC 57.322 50.000 0.00 0.00 46.87 4.11
99 100 2.144450 AGGACTTGGGAAAGAAACCCT 58.856 47.619 0.00 0.00 46.82 4.34
100 101 3.332968 AGGACTTGGGAAAGAAACCCTA 58.667 45.455 0.00 0.00 46.82 3.53
101 102 3.725267 AGGACTTGGGAAAGAAACCCTAA 59.275 43.478 0.00 0.00 46.82 2.69
102 103 3.825014 GGACTTGGGAAAGAAACCCTAAC 59.175 47.826 0.00 0.00 46.82 2.34
103 104 4.447325 GGACTTGGGAAAGAAACCCTAACT 60.447 45.833 0.00 0.00 46.82 2.24
104 105 5.138276 GACTTGGGAAAGAAACCCTAACTT 58.862 41.667 0.00 0.00 46.82 2.66
105 106 6.270219 ACTTGGGAAAGAAACCCTAACTTA 57.730 37.500 0.00 0.00 46.82 2.24
106 107 6.860034 ACTTGGGAAAGAAACCCTAACTTAT 58.140 36.000 0.00 0.00 46.82 1.73
107 108 7.302948 ACTTGGGAAAGAAACCCTAACTTATT 58.697 34.615 0.00 0.00 46.82 1.40
108 109 7.450634 ACTTGGGAAAGAAACCCTAACTTATTC 59.549 37.037 0.00 0.00 46.82 1.75
109 110 6.250711 TGGGAAAGAAACCCTAACTTATTCC 58.749 40.000 0.00 0.00 46.82 3.01
110 111 5.356190 GGGAAAGAAACCCTAACTTATTCCG 59.644 44.000 0.00 0.00 43.65 4.30
111 112 5.942236 GGAAAGAAACCCTAACTTATTCCGT 59.058 40.000 0.00 0.00 0.00 4.69
112 113 6.093219 GGAAAGAAACCCTAACTTATTCCGTC 59.907 42.308 0.00 0.00 0.00 4.79
113 114 6.370186 AAGAAACCCTAACTTATTCCGTCT 57.630 37.500 0.00 0.00 0.00 4.18
114 115 5.975282 AGAAACCCTAACTTATTCCGTCTC 58.025 41.667 0.00 0.00 0.00 3.36
115 116 5.720520 AGAAACCCTAACTTATTCCGTCTCT 59.279 40.000 0.00 0.00 0.00 3.10
116 117 5.595257 AACCCTAACTTATTCCGTCTCTC 57.405 43.478 0.00 0.00 0.00 3.20
117 118 4.869451 ACCCTAACTTATTCCGTCTCTCT 58.131 43.478 0.00 0.00 0.00 3.10
118 119 4.888823 ACCCTAACTTATTCCGTCTCTCTC 59.111 45.833 0.00 0.00 0.00 3.20
119 120 5.134661 CCCTAACTTATTCCGTCTCTCTCT 58.865 45.833 0.00 0.00 0.00 3.10
120 121 5.595133 CCCTAACTTATTCCGTCTCTCTCTT 59.405 44.000 0.00 0.00 0.00 2.85
121 122 6.097129 CCCTAACTTATTCCGTCTCTCTCTTT 59.903 42.308 0.00 0.00 0.00 2.52
122 123 6.975772 CCTAACTTATTCCGTCTCTCTCTTTG 59.024 42.308 0.00 0.00 0.00 2.77
123 124 5.331876 ACTTATTCCGTCTCTCTCTTTGG 57.668 43.478 0.00 0.00 0.00 3.28
124 125 5.017490 ACTTATTCCGTCTCTCTCTTTGGA 58.983 41.667 0.00 0.00 0.00 3.53
125 126 5.659079 ACTTATTCCGTCTCTCTCTTTGGAT 59.341 40.000 0.00 0.00 0.00 3.41
126 127 3.876274 TTCCGTCTCTCTCTTTGGATG 57.124 47.619 0.00 0.00 0.00 3.51
127 128 3.087370 TCCGTCTCTCTCTTTGGATGA 57.913 47.619 0.00 0.00 0.00 2.92
128 129 3.636679 TCCGTCTCTCTCTTTGGATGAT 58.363 45.455 0.00 0.00 0.00 2.45
129 130 4.026744 TCCGTCTCTCTCTTTGGATGATT 58.973 43.478 0.00 0.00 0.00 2.57
130 131 4.467795 TCCGTCTCTCTCTTTGGATGATTT 59.532 41.667 0.00 0.00 0.00 2.17
131 132 4.569966 CCGTCTCTCTCTTTGGATGATTTG 59.430 45.833 0.00 0.00 0.00 2.32
132 133 5.414360 CGTCTCTCTCTTTGGATGATTTGA 58.586 41.667 0.00 0.00 0.00 2.69
133 134 5.871524 CGTCTCTCTCTTTGGATGATTTGAA 59.128 40.000 0.00 0.00 0.00 2.69
134 135 6.369890 CGTCTCTCTCTTTGGATGATTTGAAA 59.630 38.462 0.00 0.00 0.00 2.69
135 136 7.525759 GTCTCTCTCTTTGGATGATTTGAAAC 58.474 38.462 0.00 0.00 0.00 2.78
136 137 7.173907 GTCTCTCTCTTTGGATGATTTGAAACA 59.826 37.037 0.00 0.00 0.00 2.83
137 138 7.720957 TCTCTCTCTTTGGATGATTTGAAACAA 59.279 33.333 0.00 0.00 0.00 2.83
138 139 7.879070 TCTCTCTTTGGATGATTTGAAACAAG 58.121 34.615 0.00 0.00 0.00 3.16
139 140 6.985117 TCTCTTTGGATGATTTGAAACAAGG 58.015 36.000 0.00 0.00 0.00 3.61
140 141 6.777091 TCTCTTTGGATGATTTGAAACAAGGA 59.223 34.615 0.00 0.00 0.00 3.36
141 142 7.452501 TCTCTTTGGATGATTTGAAACAAGGAT 59.547 33.333 0.00 0.00 0.00 3.24
142 143 7.605449 TCTTTGGATGATTTGAAACAAGGATC 58.395 34.615 0.00 0.00 0.00 3.36
143 144 7.452501 TCTTTGGATGATTTGAAACAAGGATCT 59.547 33.333 0.00 0.00 0.00 2.75
144 145 8.648698 TTTGGATGATTTGAAACAAGGATCTA 57.351 30.769 0.00 0.00 0.00 1.98
145 146 8.827832 TTGGATGATTTGAAACAAGGATCTAT 57.172 30.769 0.00 0.00 0.00 1.98
146 147 8.455903 TGGATGATTTGAAACAAGGATCTATC 57.544 34.615 0.00 0.00 0.00 2.08
147 148 8.277197 TGGATGATTTGAAACAAGGATCTATCT 58.723 33.333 0.00 0.00 0.00 1.98
148 149 9.784531 GGATGATTTGAAACAAGGATCTATCTA 57.215 33.333 0.00 0.00 0.00 1.98
153 154 9.911788 ATTTGAAACAAGGATCTATCTATGTGT 57.088 29.630 0.00 0.00 0.00 3.72
174 175 9.709495 ATGTGTATCTTTTATTTGCATTTGTGT 57.291 25.926 0.00 0.00 0.00 3.72
175 176 8.976471 TGTGTATCTTTTATTTGCATTTGTGTG 58.024 29.630 0.00 0.00 0.00 3.82
176 177 8.977505 GTGTATCTTTTATTTGCATTTGTGTGT 58.022 29.630 0.00 0.00 0.00 3.72
177 178 9.539825 TGTATCTTTTATTTGCATTTGTGTGTT 57.460 25.926 0.00 0.00 0.00 3.32
178 179 9.796062 GTATCTTTTATTTGCATTTGTGTGTTG 57.204 29.630 0.00 0.00 0.00 3.33
179 180 8.659925 ATCTTTTATTTGCATTTGTGTGTTGA 57.340 26.923 0.00 0.00 0.00 3.18
180 181 8.659925 TCTTTTATTTGCATTTGTGTGTTGAT 57.340 26.923 0.00 0.00 0.00 2.57
181 182 9.107177 TCTTTTATTTGCATTTGTGTGTTGATT 57.893 25.926 0.00 0.00 0.00 2.57
182 183 9.719279 CTTTTATTTGCATTTGTGTGTTGATTT 57.281 25.926 0.00 0.00 0.00 2.17
183 184 9.499585 TTTTATTTGCATTTGTGTGTTGATTTG 57.500 25.926 0.00 0.00 0.00 2.32
184 185 6.922247 ATTTGCATTTGTGTGTTGATTTGA 57.078 29.167 0.00 0.00 0.00 2.69
185 186 5.970140 TTGCATTTGTGTGTTGATTTGAG 57.030 34.783 0.00 0.00 0.00 3.02
186 187 5.008619 TGCATTTGTGTGTTGATTTGAGT 57.991 34.783 0.00 0.00 0.00 3.41
187 188 4.804665 TGCATTTGTGTGTTGATTTGAGTG 59.195 37.500 0.00 0.00 0.00 3.51
188 189 4.805192 GCATTTGTGTGTTGATTTGAGTGT 59.195 37.500 0.00 0.00 0.00 3.55
189 190 5.291614 GCATTTGTGTGTTGATTTGAGTGTT 59.708 36.000 0.00 0.00 0.00 3.32
190 191 6.183360 GCATTTGTGTGTTGATTTGAGTGTTT 60.183 34.615 0.00 0.00 0.00 2.83
191 192 6.942886 TTTGTGTGTTGATTTGAGTGTTTC 57.057 33.333 0.00 0.00 0.00 2.78
192 193 4.992688 TGTGTGTTGATTTGAGTGTTTCC 58.007 39.130 0.00 0.00 0.00 3.13
193 194 4.142271 TGTGTGTTGATTTGAGTGTTTCCC 60.142 41.667 0.00 0.00 0.00 3.97
194 195 4.097892 GTGTGTTGATTTGAGTGTTTCCCT 59.902 41.667 0.00 0.00 0.00 4.20
195 196 4.338118 TGTGTTGATTTGAGTGTTTCCCTC 59.662 41.667 0.00 0.00 0.00 4.30
196 197 3.563808 TGTTGATTTGAGTGTTTCCCTCG 59.436 43.478 0.00 0.00 0.00 4.63
197 198 2.151202 TGATTTGAGTGTTTCCCTCGC 58.849 47.619 0.00 0.00 0.00 5.03
198 199 2.151202 GATTTGAGTGTTTCCCTCGCA 58.849 47.619 0.00 0.00 0.00 5.10
199 200 2.270352 TTTGAGTGTTTCCCTCGCAT 57.730 45.000 0.00 0.00 0.00 4.73
200 201 3.410631 TTTGAGTGTTTCCCTCGCATA 57.589 42.857 0.00 0.00 0.00 3.14
201 202 3.627395 TTGAGTGTTTCCCTCGCATAT 57.373 42.857 0.00 0.00 0.00 1.78
202 203 3.179443 TGAGTGTTTCCCTCGCATATC 57.821 47.619 0.00 0.00 0.00 1.63
203 204 2.158957 TGAGTGTTTCCCTCGCATATCC 60.159 50.000 0.00 0.00 0.00 2.59
204 205 2.103263 GAGTGTTTCCCTCGCATATCCT 59.897 50.000 0.00 0.00 0.00 3.24
205 206 2.103263 AGTGTTTCCCTCGCATATCCTC 59.897 50.000 0.00 0.00 0.00 3.71
206 207 2.103263 GTGTTTCCCTCGCATATCCTCT 59.897 50.000 0.00 0.00 0.00 3.69
207 208 3.321111 GTGTTTCCCTCGCATATCCTCTA 59.679 47.826 0.00 0.00 0.00 2.43
208 209 3.574396 TGTTTCCCTCGCATATCCTCTAG 59.426 47.826 0.00 0.00 0.00 2.43
209 210 3.527507 TTCCCTCGCATATCCTCTAGT 57.472 47.619 0.00 0.00 0.00 2.57
210 211 2.796557 TCCCTCGCATATCCTCTAGTG 58.203 52.381 0.00 0.00 0.00 2.74
211 212 2.108425 TCCCTCGCATATCCTCTAGTGT 59.892 50.000 0.00 0.00 0.00 3.55
212 213 2.894126 CCCTCGCATATCCTCTAGTGTT 59.106 50.000 0.00 0.00 0.00 3.32
213 214 3.057174 CCCTCGCATATCCTCTAGTGTTC 60.057 52.174 0.00 0.00 0.00 3.18
214 215 3.570125 CCTCGCATATCCTCTAGTGTTCA 59.430 47.826 0.00 0.00 0.00 3.18
215 216 4.219507 CCTCGCATATCCTCTAGTGTTCAT 59.780 45.833 0.00 0.00 0.00 2.57
216 217 5.378292 TCGCATATCCTCTAGTGTTCATC 57.622 43.478 0.00 0.00 0.00 2.92
217 218 4.083271 TCGCATATCCTCTAGTGTTCATCG 60.083 45.833 0.00 0.00 0.00 3.84
218 219 4.320567 CGCATATCCTCTAGTGTTCATCGT 60.321 45.833 0.00 0.00 0.00 3.73
219 220 4.920340 GCATATCCTCTAGTGTTCATCGTG 59.080 45.833 0.00 0.00 0.00 4.35
220 221 5.508153 GCATATCCTCTAGTGTTCATCGTGT 60.508 44.000 0.00 0.00 0.00 4.49
221 222 6.507900 CATATCCTCTAGTGTTCATCGTGTT 58.492 40.000 0.00 0.00 0.00 3.32
222 223 4.436242 TCCTCTAGTGTTCATCGTGTTC 57.564 45.455 0.00 0.00 0.00 3.18
223 224 4.079970 TCCTCTAGTGTTCATCGTGTTCT 58.920 43.478 0.00 0.00 0.00 3.01
224 225 4.523173 TCCTCTAGTGTTCATCGTGTTCTT 59.477 41.667 0.00 0.00 0.00 2.52
225 226 4.859798 CCTCTAGTGTTCATCGTGTTCTTC 59.140 45.833 0.00 0.00 0.00 2.87
226 227 4.806330 TCTAGTGTTCATCGTGTTCTTCC 58.194 43.478 0.00 0.00 0.00 3.46
227 228 3.753294 AGTGTTCATCGTGTTCTTCCT 57.247 42.857 0.00 0.00 0.00 3.36
228 229 4.073293 AGTGTTCATCGTGTTCTTCCTT 57.927 40.909 0.00 0.00 0.00 3.36
229 230 3.809832 AGTGTTCATCGTGTTCTTCCTTG 59.190 43.478 0.00 0.00 0.00 3.61
230 231 2.548057 TGTTCATCGTGTTCTTCCTTGC 59.452 45.455 0.00 0.00 0.00 4.01
231 232 2.542020 TCATCGTGTTCTTCCTTGCA 57.458 45.000 0.00 0.00 0.00 4.08
232 233 2.416747 TCATCGTGTTCTTCCTTGCAG 58.583 47.619 0.00 0.00 0.00 4.41
233 234 2.146342 CATCGTGTTCTTCCTTGCAGT 58.854 47.619 0.00 0.00 0.00 4.40
234 235 3.006430 TCATCGTGTTCTTCCTTGCAGTA 59.994 43.478 0.00 0.00 0.00 2.74
235 236 3.026630 TCGTGTTCTTCCTTGCAGTAG 57.973 47.619 0.00 0.00 0.00 2.57
236 237 2.364324 TCGTGTTCTTCCTTGCAGTAGT 59.636 45.455 0.00 0.00 0.00 2.73
237 238 2.731976 CGTGTTCTTCCTTGCAGTAGTC 59.268 50.000 0.00 0.00 0.00 2.59
238 239 3.728845 GTGTTCTTCCTTGCAGTAGTCA 58.271 45.455 0.00 0.00 0.00 3.41
239 240 3.495001 GTGTTCTTCCTTGCAGTAGTCAC 59.505 47.826 0.00 0.00 0.00 3.67
240 241 3.067833 GTTCTTCCTTGCAGTAGTCACC 58.932 50.000 0.00 0.00 0.00 4.02
241 242 2.325484 TCTTCCTTGCAGTAGTCACCA 58.675 47.619 0.00 0.00 0.00 4.17
242 243 2.906389 TCTTCCTTGCAGTAGTCACCAT 59.094 45.455 0.00 0.00 0.00 3.55
243 244 2.768253 TCCTTGCAGTAGTCACCATG 57.232 50.000 0.00 0.00 0.00 3.66
244 245 1.278985 TCCTTGCAGTAGTCACCATGG 59.721 52.381 11.19 11.19 0.00 3.66
245 246 1.679944 CCTTGCAGTAGTCACCATGGG 60.680 57.143 18.09 5.22 0.00 4.00
246 247 1.278985 CTTGCAGTAGTCACCATGGGA 59.721 52.381 18.09 7.80 0.00 4.37
247 248 1.583556 TGCAGTAGTCACCATGGGAT 58.416 50.000 18.09 0.86 0.00 3.85
248 249 1.210234 TGCAGTAGTCACCATGGGATG 59.790 52.381 18.09 6.33 0.00 3.51
249 250 1.959042 CAGTAGTCACCATGGGATGC 58.041 55.000 18.09 3.18 0.00 3.91
250 251 0.465705 AGTAGTCACCATGGGATGCG 59.534 55.000 18.09 0.00 0.00 4.73
251 252 0.178068 GTAGTCACCATGGGATGCGT 59.822 55.000 18.09 0.00 0.00 5.24
252 253 0.177836 TAGTCACCATGGGATGCGTG 59.822 55.000 18.09 3.86 34.71 5.34
253 254 2.438254 TCACCATGGGATGCGTGC 60.438 61.111 18.09 0.00 33.96 5.34
254 255 3.520862 CACCATGGGATGCGTGCC 61.521 66.667 18.09 10.00 36.16 5.01
259 260 3.073378 TGGGATGCGTGCCACTAA 58.927 55.556 16.20 0.00 41.40 2.24
260 261 1.078497 TGGGATGCGTGCCACTAAG 60.078 57.895 16.20 0.00 41.40 2.18
261 262 1.078426 GGGATGCGTGCCACTAAGT 60.078 57.895 12.26 0.00 35.58 2.24
262 263 1.369091 GGGATGCGTGCCACTAAGTG 61.369 60.000 12.26 0.00 35.58 3.16
263 264 0.673644 GGATGCGTGCCACTAAGTGT 60.674 55.000 0.00 0.00 0.00 3.55
264 265 1.156736 GATGCGTGCCACTAAGTGTT 58.843 50.000 0.00 0.00 0.00 3.32
265 266 0.874390 ATGCGTGCCACTAAGTGTTG 59.126 50.000 0.00 0.00 0.00 3.33
266 267 1.163420 TGCGTGCCACTAAGTGTTGG 61.163 55.000 0.00 0.00 0.00 3.77
267 268 1.164041 GCGTGCCACTAAGTGTTGGT 61.164 55.000 0.00 0.00 0.00 3.67
268 269 0.586319 CGTGCCACTAAGTGTTGGTG 59.414 55.000 0.00 0.00 41.26 4.17
269 270 0.310854 GTGCCACTAAGTGTTGGTGC 59.689 55.000 0.00 0.00 40.38 5.01
270 271 0.821711 TGCCACTAAGTGTTGGTGCC 60.822 55.000 0.00 0.00 40.38 5.01
271 272 1.524008 GCCACTAAGTGTTGGTGCCC 61.524 60.000 0.00 0.00 40.38 5.36
272 273 0.179004 CCACTAAGTGTTGGTGCCCA 60.179 55.000 0.00 0.00 40.38 5.36
273 274 1.686355 CACTAAGTGTTGGTGCCCAA 58.314 50.000 2.84 2.84 41.69 4.12
274 275 2.238521 CACTAAGTGTTGGTGCCCAAT 58.761 47.619 9.49 0.00 45.80 3.16
275 276 2.627699 CACTAAGTGTTGGTGCCCAATT 59.372 45.455 9.49 3.97 45.80 2.32
276 277 2.890945 ACTAAGTGTTGGTGCCCAATTC 59.109 45.455 9.49 6.59 45.80 2.17
277 278 0.673437 AAGTGTTGGTGCCCAATTCG 59.327 50.000 9.49 0.00 45.80 3.34
278 279 1.178534 AGTGTTGGTGCCCAATTCGG 61.179 55.000 9.49 0.00 45.80 4.30
279 280 1.152652 TGTTGGTGCCCAATTCGGT 60.153 52.632 9.49 0.00 45.80 4.69
280 281 0.110678 TGTTGGTGCCCAATTCGGTA 59.889 50.000 9.49 0.00 45.80 4.02
281 282 0.808755 GTTGGTGCCCAATTCGGTAG 59.191 55.000 9.49 0.00 45.80 3.18
282 283 0.963355 TTGGTGCCCAATTCGGTAGC 60.963 55.000 2.53 2.53 38.75 3.58
283 284 2.119029 GGTGCCCAATTCGGTAGCC 61.119 63.158 0.00 0.00 30.59 3.93
284 285 1.077716 GTGCCCAATTCGGTAGCCT 60.078 57.895 0.00 0.00 0.00 4.58
285 286 1.095807 GTGCCCAATTCGGTAGCCTC 61.096 60.000 0.00 0.00 0.00 4.70
286 287 1.526225 GCCCAATTCGGTAGCCTCC 60.526 63.158 0.00 0.00 0.00 4.30
287 288 1.148498 CCCAATTCGGTAGCCTCCC 59.852 63.158 0.00 0.00 0.00 4.30
288 289 1.148498 CCAATTCGGTAGCCTCCCC 59.852 63.158 0.00 0.00 0.00 4.81
289 290 1.148498 CAATTCGGTAGCCTCCCCC 59.852 63.158 0.00 0.00 0.00 5.40
290 291 1.004361 AATTCGGTAGCCTCCCCCT 59.996 57.895 0.00 0.00 0.00 4.79
291 292 1.054978 AATTCGGTAGCCTCCCCCTC 61.055 60.000 0.00 0.00 0.00 4.30
292 293 2.967063 ATTCGGTAGCCTCCCCCTCC 62.967 65.000 0.00 0.00 0.00 4.30
294 295 4.902258 GGTAGCCTCCCCCTCCCC 62.902 77.778 0.00 0.00 0.00 4.81
309 310 4.344865 CCCGTCCCACCCCAAGTG 62.345 72.222 0.00 0.00 46.83 3.16
323 324 3.665745 CCAAGTGAACATGGGGAAAAG 57.334 47.619 0.00 0.00 31.48 2.27
324 325 2.299867 CCAAGTGAACATGGGGAAAAGG 59.700 50.000 0.00 0.00 31.48 3.11
325 326 3.230134 CAAGTGAACATGGGGAAAAGGA 58.770 45.455 0.00 0.00 0.00 3.36
326 327 3.833559 AGTGAACATGGGGAAAAGGAT 57.166 42.857 0.00 0.00 0.00 3.24
343 344 1.661463 GATATGCCTCTCCCCATGGA 58.339 55.000 15.22 0.00 38.75 3.41
371 372 1.298859 GCTACTGCAAAGGGACGGTG 61.299 60.000 0.00 0.00 39.41 4.94
392 393 2.594592 GCCACGACAAGCAAGGGT 60.595 61.111 0.00 0.00 0.00 4.34
418 419 1.968017 CTGCGAACATGCACCACCT 60.968 57.895 0.00 0.00 40.62 4.00
419 420 0.673333 CTGCGAACATGCACCACCTA 60.673 55.000 0.00 0.00 40.62 3.08
431 432 0.826256 ACCACCTACACTGTGAGCGA 60.826 55.000 15.86 0.00 35.74 4.93
460 461 1.624813 TGATGATGTGAGCACTGTGGA 59.375 47.619 10.21 0.00 0.00 4.02
470 471 1.575922 CACTGTGGATGGTGTTGCG 59.424 57.895 0.00 0.00 0.00 4.85
472 473 1.600636 CTGTGGATGGTGTTGCGGT 60.601 57.895 0.00 0.00 0.00 5.68
473 474 0.321210 CTGTGGATGGTGTTGCGGTA 60.321 55.000 0.00 0.00 0.00 4.02
474 475 0.321210 TGTGGATGGTGTTGCGGTAG 60.321 55.000 0.00 0.00 0.00 3.18
475 476 0.321298 GTGGATGGTGTTGCGGTAGT 60.321 55.000 0.00 0.00 0.00 2.73
476 477 0.321210 TGGATGGTGTTGCGGTAGTG 60.321 55.000 0.00 0.00 0.00 2.74
477 478 0.036765 GGATGGTGTTGCGGTAGTGA 60.037 55.000 0.00 0.00 0.00 3.41
478 479 1.406887 GGATGGTGTTGCGGTAGTGAT 60.407 52.381 0.00 0.00 0.00 3.06
554 1179 2.069165 AAAGCCAACCCCGAGCTCTT 62.069 55.000 12.85 0.00 35.30 2.85
562 1187 1.555533 ACCCCGAGCTCTTAGAAAAGG 59.444 52.381 12.85 2.48 33.22 3.11
587 1212 2.417933 CCATCAGAGCTTTCAAGGTTCG 59.582 50.000 0.00 0.00 36.78 3.95
594 1219 2.066262 GCTTTCAAGGTTCGTCGATGA 58.934 47.619 2.39 2.39 0.00 2.92
596 1221 3.863424 GCTTTCAAGGTTCGTCGATGATA 59.137 43.478 8.43 0.00 0.00 2.15
597 1222 4.508124 GCTTTCAAGGTTCGTCGATGATAT 59.492 41.667 8.43 0.00 0.00 1.63
608 1265 0.601046 CGATGATATGCCGGCACTGT 60.601 55.000 35.50 21.07 0.00 3.55
618 1275 1.082117 CCGGCACTGTAACATCGGTC 61.082 60.000 0.00 0.00 33.63 4.79
621 1278 1.082117 GCACTGTAACATCGGTCGGG 61.082 60.000 0.00 0.00 0.00 5.14
642 1299 1.506718 GACGGCGACAGATGACTCA 59.493 57.895 16.62 0.00 0.00 3.41
647 1304 1.333931 GGCGACAGATGACTCACGATA 59.666 52.381 0.00 0.00 0.00 2.92
649 1306 2.223272 GCGACAGATGACTCACGATACA 60.223 50.000 0.00 0.00 0.00 2.29
650 1307 3.730963 GCGACAGATGACTCACGATACAA 60.731 47.826 0.00 0.00 0.00 2.41
651 1308 4.602006 CGACAGATGACTCACGATACAAT 58.398 43.478 0.00 0.00 0.00 2.71
652 1309 5.748592 CGACAGATGACTCACGATACAATA 58.251 41.667 0.00 0.00 0.00 1.90
664 1321 4.506654 CACGATACAATAAGTAGGCCACAC 59.493 45.833 5.01 1.61 35.85 3.82
669 1326 3.196901 ACAATAAGTAGGCCACACGATGA 59.803 43.478 5.01 0.00 0.00 2.92
671 1328 2.315925 AAGTAGGCCACACGATGATG 57.684 50.000 5.01 0.00 0.00 3.07
672 1329 1.195115 AGTAGGCCACACGATGATGT 58.805 50.000 5.01 0.00 0.00 3.06
681 1338 2.819154 CGATGATGTGGTGCGGCA 60.819 61.111 0.00 0.00 0.00 5.69
683 1340 1.717791 CGATGATGTGGTGCGGCAAT 61.718 55.000 3.23 0.00 0.00 3.56
685 1342 1.265095 GATGATGTGGTGCGGCAATAG 59.735 52.381 3.23 0.00 0.00 1.73
688 1345 3.518068 GTGGTGCGGCAATAGGGC 61.518 66.667 3.23 0.00 39.06 5.19
697 1354 2.414785 GCAATAGGGCCGGGTGTTG 61.415 63.158 2.18 0.00 0.00 3.33
702 1359 4.966787 GGGCCGGGTGTTGCAAGA 62.967 66.667 2.18 0.00 0.00 3.02
707 1364 2.892334 CGGGTGTTGCAAGACCACG 61.892 63.158 37.74 32.73 43.72 4.94
711 1368 0.248458 GTGTTGCAAGACCACGTTGG 60.248 55.000 15.56 2.92 45.02 3.77
720 1377 0.238289 GACCACGTTGGATGTTGCAG 59.762 55.000 10.46 0.00 40.96 4.41
722 1379 1.081242 CACGTTGGATGTTGCAGGC 60.081 57.895 0.00 0.00 0.00 4.85
726 1383 0.242017 GTTGGATGTTGCAGGCTGAC 59.758 55.000 20.86 9.19 0.00 3.51
771 1429 4.704833 GCGCTGCAGGAGGGTCAA 62.705 66.667 17.12 0.00 36.97 3.18
774 1432 1.751927 GCTGCAGGAGGGTCAATGG 60.752 63.158 17.12 0.00 0.00 3.16
775 1433 1.077212 CTGCAGGAGGGTCAATGGG 60.077 63.158 5.57 0.00 0.00 4.00
776 1434 2.440980 GCAGGAGGGTCAATGGGC 60.441 66.667 0.00 0.00 0.00 5.36
777 1435 2.124570 CAGGAGGGTCAATGGGCG 60.125 66.667 0.00 0.00 0.00 6.13
778 1436 4.115199 AGGAGGGTCAATGGGCGC 62.115 66.667 0.00 0.00 0.00 6.53
805 1463 3.289834 CAAAGTGCCAGCTGCCGT 61.290 61.111 8.66 0.00 40.16 5.68
832 1490 2.047844 CACAGAGGTGCGGTGAGG 60.048 66.667 0.00 0.00 44.18 3.86
833 1491 4.008933 ACAGAGGTGCGGTGAGGC 62.009 66.667 0.00 0.00 0.00 4.70
834 1492 4.007644 CAGAGGTGCGGTGAGGCA 62.008 66.667 0.00 0.00 41.45 4.75
933 1751 1.869132 ACAAAACTAAACTCGCGTCCC 59.131 47.619 5.77 0.00 0.00 4.46
1076 1899 4.966787 AAACATGGCCACGGCGGT 62.967 61.111 8.16 0.00 43.06 5.68
1503 2326 3.816920 CTCGACGTGCGCAACTCG 61.817 66.667 24.83 24.83 40.61 4.18
1623 2446 1.227380 GGTCGCCATGATCGAAGCT 60.227 57.895 10.75 0.00 37.73 3.74
1799 2622 4.989279 ATTCACAACTGTGCAAGTTCTT 57.011 36.364 4.92 1.01 46.60 2.52
1841 2664 2.660670 TTTTGCGGGGGACTTTAAGA 57.339 45.000 0.00 0.00 0.00 2.10
1842 2665 2.660670 TTTGCGGGGGACTTTAAGAA 57.339 45.000 0.00 0.00 0.00 2.52
1843 2666 1.900245 TTGCGGGGGACTTTAAGAAC 58.100 50.000 0.00 0.00 0.00 3.01
1844 2667 0.766131 TGCGGGGGACTTTAAGAACA 59.234 50.000 0.00 0.00 0.00 3.18
1845 2668 1.162698 GCGGGGGACTTTAAGAACAC 58.837 55.000 0.00 0.00 0.00 3.32
1846 2669 1.271217 GCGGGGGACTTTAAGAACACT 60.271 52.381 0.00 0.00 0.00 3.55
1847 2670 2.423577 CGGGGGACTTTAAGAACACTG 58.576 52.381 0.00 0.00 0.00 3.66
1848 2671 2.038033 CGGGGGACTTTAAGAACACTGA 59.962 50.000 0.00 0.00 0.00 3.41
1849 2672 3.676093 GGGGGACTTTAAGAACACTGAG 58.324 50.000 0.00 0.00 0.00 3.35
1850 2673 3.072622 GGGGGACTTTAAGAACACTGAGT 59.927 47.826 0.00 0.00 0.00 3.41
1851 2674 4.445879 GGGGGACTTTAAGAACACTGAGTT 60.446 45.833 0.00 0.00 44.93 3.01
1854 2677 6.285990 GGGACTTTAAGAACACTGAGTTGTA 58.714 40.000 0.00 0.00 41.51 2.41
1867 2690 9.672673 AACACTGAGTTGTATATATTCAAAGCT 57.327 29.630 6.37 1.56 39.49 3.74
1898 2724 6.524734 TGTAATGTGATGACTGTCAGTTTCT 58.475 36.000 16.46 0.00 0.00 2.52
1917 2743 8.829612 CAGTTTCTTTGTTCAATAAAAATGGCT 58.170 29.630 10.10 0.00 0.00 4.75
1920 2746 9.487790 TTTCTTTGTTCAATAAAAATGGCTAGG 57.512 29.630 0.00 0.00 0.00 3.02
1921 2747 8.415950 TCTTTGTTCAATAAAAATGGCTAGGA 57.584 30.769 0.00 0.00 0.00 2.94
1922 2748 8.865090 TCTTTGTTCAATAAAAATGGCTAGGAA 58.135 29.630 0.00 0.00 0.00 3.36
1923 2749 9.657419 CTTTGTTCAATAAAAATGGCTAGGAAT 57.343 29.630 0.00 0.00 0.00 3.01
1940 2766 6.205658 GCTAGGAATTAGGCACCTTATTTCTG 59.794 42.308 16.23 9.33 33.46 3.02
1941 2767 6.327386 AGGAATTAGGCACCTTATTTCTGA 57.673 37.500 8.17 0.00 31.84 3.27
2018 2846 5.163513 CGAAGAGGCAAAACTAATGCAAAT 58.836 37.500 0.00 0.00 45.60 2.32
2263 3199 4.039730 TGAGAAAGAAGTCTCCTCCTTGTG 59.960 45.833 0.01 0.00 42.97 3.33
2427 3363 4.821260 GGTTGCTTTCCAAATCCAATTGTT 59.179 37.500 4.43 0.00 34.68 2.83
2474 3410 2.106857 AGACTACAGCCCGCTAGATAGT 59.893 50.000 0.00 7.01 0.00 2.12
2495 3431 3.434299 GTGACACGTCGAATACCCAATTT 59.566 43.478 0.00 0.00 0.00 1.82
2510 3446 3.328505 CCAATTTGAGCTTTCGCCAATT 58.671 40.909 0.00 0.00 36.60 2.32
2567 3503 6.809428 TCTCATCCCAGTTCCTATCAGATAT 58.191 40.000 0.00 0.00 0.00 1.63
2606 3542 6.129053 GTAGCATACTAGTTTGTACGGAGT 57.871 41.667 13.84 0.00 41.54 3.85
2607 3543 7.251704 GTAGCATACTAGTTTGTACGGAGTA 57.748 40.000 13.84 0.00 39.68 2.59
2608 3544 7.869800 GTAGCATACTAGTTTGTACGGAGTAT 58.130 38.462 13.84 0.00 41.65 2.12
2653 3589 6.780198 ATGGCTTAATAATTACTCCCTCCA 57.220 37.500 0.00 0.00 0.00 3.86
2658 3594 2.579624 TAATTACTCCCTCCAGGCCA 57.420 50.000 5.01 0.00 34.51 5.36
2679 3615 5.506649 GCCATTTGAACTAAAACCTCGTCAA 60.507 40.000 0.00 0.00 0.00 3.18
2681 3617 6.801862 CCATTTGAACTAAAACCTCGTCAATC 59.198 38.462 0.00 0.00 0.00 2.67
2682 3618 7.308589 CCATTTGAACTAAAACCTCGTCAATCT 60.309 37.037 0.00 0.00 0.00 2.40
2748 3684 8.909708 TTATTTGTCTAAAATACATGCAGCAC 57.090 30.769 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 6.830838 AGTCTTAATGATTCACTTGGGGAATC 59.169 38.462 13.64 13.64 46.85 2.52
2 3 6.735556 AGTCTTAATGATTCACTTGGGGAAT 58.264 36.000 0.00 0.00 37.67 3.01
3 4 6.139679 AGTCTTAATGATTCACTTGGGGAA 57.860 37.500 0.00 0.00 0.00 3.97
4 5 5.779241 AGTCTTAATGATTCACTTGGGGA 57.221 39.130 0.00 0.00 0.00 4.81
5 6 5.393461 GCAAGTCTTAATGATTCACTTGGGG 60.393 44.000 18.49 3.25 42.76 4.96
6 7 5.183713 TGCAAGTCTTAATGATTCACTTGGG 59.816 40.000 18.49 3.73 42.76 4.12
7 8 6.072286 AGTGCAAGTCTTAATGATTCACTTGG 60.072 38.462 18.49 7.53 42.76 3.61
8 9 6.800408 CAGTGCAAGTCTTAATGATTCACTTG 59.200 38.462 15.13 15.13 44.50 3.16
9 10 6.712095 TCAGTGCAAGTCTTAATGATTCACTT 59.288 34.615 0.00 0.00 30.82 3.16
10 11 6.233434 TCAGTGCAAGTCTTAATGATTCACT 58.767 36.000 0.00 0.00 33.13 3.41
11 12 6.486253 TCAGTGCAAGTCTTAATGATTCAC 57.514 37.500 0.00 0.00 0.00 3.18
12 13 6.094464 CCATCAGTGCAAGTCTTAATGATTCA 59.906 38.462 0.00 0.00 0.00 2.57
13 14 6.317140 TCCATCAGTGCAAGTCTTAATGATTC 59.683 38.462 0.00 0.00 0.00 2.52
14 15 6.182627 TCCATCAGTGCAAGTCTTAATGATT 58.817 36.000 0.00 0.00 0.00 2.57
15 16 5.748402 TCCATCAGTGCAAGTCTTAATGAT 58.252 37.500 0.00 0.00 0.00 2.45
16 17 5.046376 TCTCCATCAGTGCAAGTCTTAATGA 60.046 40.000 0.00 0.00 0.00 2.57
17 18 5.181009 TCTCCATCAGTGCAAGTCTTAATG 58.819 41.667 0.00 0.00 0.00 1.90
18 19 5.426689 TCTCCATCAGTGCAAGTCTTAAT 57.573 39.130 0.00 0.00 0.00 1.40
19 20 4.890158 TCTCCATCAGTGCAAGTCTTAA 57.110 40.909 0.00 0.00 0.00 1.85
20 21 4.890158 TTCTCCATCAGTGCAAGTCTTA 57.110 40.909 0.00 0.00 0.00 2.10
21 22 3.777106 TTCTCCATCAGTGCAAGTCTT 57.223 42.857 0.00 0.00 0.00 3.01
22 23 3.777106 TTTCTCCATCAGTGCAAGTCT 57.223 42.857 0.00 0.00 0.00 3.24
23 24 4.836125 TTTTTCTCCATCAGTGCAAGTC 57.164 40.909 0.00 0.00 0.00 3.01
24 25 4.021719 CCATTTTTCTCCATCAGTGCAAGT 60.022 41.667 0.00 0.00 0.00 3.16
25 26 4.491676 CCATTTTTCTCCATCAGTGCAAG 58.508 43.478 0.00 0.00 0.00 4.01
26 27 3.306225 GCCATTTTTCTCCATCAGTGCAA 60.306 43.478 0.00 0.00 0.00 4.08
27 28 2.231964 GCCATTTTTCTCCATCAGTGCA 59.768 45.455 0.00 0.00 0.00 4.57
28 29 2.494870 AGCCATTTTTCTCCATCAGTGC 59.505 45.455 0.00 0.00 0.00 4.40
29 30 4.219070 TGAAGCCATTTTTCTCCATCAGTG 59.781 41.667 0.00 0.00 0.00 3.66
30 31 4.410099 TGAAGCCATTTTTCTCCATCAGT 58.590 39.130 0.00 0.00 0.00 3.41
31 32 5.593679 ATGAAGCCATTTTTCTCCATCAG 57.406 39.130 0.00 0.00 0.00 2.90
32 33 7.479352 TTTATGAAGCCATTTTTCTCCATCA 57.521 32.000 0.00 0.00 34.31 3.07
33 34 7.010830 GCTTTTATGAAGCCATTTTTCTCCATC 59.989 37.037 4.74 0.00 37.30 3.51
34 35 6.820152 GCTTTTATGAAGCCATTTTTCTCCAT 59.180 34.615 4.74 0.00 37.30 3.41
35 36 6.165577 GCTTTTATGAAGCCATTTTTCTCCA 58.834 36.000 4.74 0.00 37.30 3.86
36 37 6.165577 TGCTTTTATGAAGCCATTTTTCTCC 58.834 36.000 11.63 0.00 42.36 3.71
37 38 7.546667 TGATGCTTTTATGAAGCCATTTTTCTC 59.453 33.333 11.63 0.61 42.36 2.87
38 39 7.388437 TGATGCTTTTATGAAGCCATTTTTCT 58.612 30.769 11.63 0.00 42.36 2.52
39 40 7.599630 TGATGCTTTTATGAAGCCATTTTTC 57.400 32.000 11.63 2.94 42.36 2.29
40 41 7.361457 GCTTGATGCTTTTATGAAGCCATTTTT 60.361 33.333 11.63 0.00 40.12 1.94
41 42 6.093082 GCTTGATGCTTTTATGAAGCCATTTT 59.907 34.615 11.63 0.00 40.12 1.82
42 43 5.583457 GCTTGATGCTTTTATGAAGCCATTT 59.417 36.000 11.63 0.00 40.12 2.32
43 44 5.114081 GCTTGATGCTTTTATGAAGCCATT 58.886 37.500 11.63 0.00 40.12 3.16
44 45 4.690122 GCTTGATGCTTTTATGAAGCCAT 58.310 39.130 11.63 6.70 40.12 4.40
45 46 4.114058 GCTTGATGCTTTTATGAAGCCA 57.886 40.909 11.63 3.03 40.12 4.75
47 48 3.131755 AGGGCTTGATGCTTTTATGAAGC 59.868 43.478 8.28 8.28 43.62 3.86
48 49 4.202090 GGAGGGCTTGATGCTTTTATGAAG 60.202 45.833 0.00 0.00 42.39 3.02
49 50 3.701040 GGAGGGCTTGATGCTTTTATGAA 59.299 43.478 0.00 0.00 42.39 2.57
50 51 3.053395 AGGAGGGCTTGATGCTTTTATGA 60.053 43.478 0.00 0.00 42.39 2.15
51 52 3.294214 AGGAGGGCTTGATGCTTTTATG 58.706 45.455 0.00 0.00 42.39 1.90
52 53 3.677156 AGGAGGGCTTGATGCTTTTAT 57.323 42.857 0.00 0.00 42.39 1.40
53 54 3.091545 CAAGGAGGGCTTGATGCTTTTA 58.908 45.455 0.00 0.00 42.39 1.52
54 55 1.897802 CAAGGAGGGCTTGATGCTTTT 59.102 47.619 0.00 0.00 42.39 2.27
55 56 1.203100 ACAAGGAGGGCTTGATGCTTT 60.203 47.619 0.00 0.00 42.39 3.51
56 57 0.407139 ACAAGGAGGGCTTGATGCTT 59.593 50.000 0.00 0.00 42.39 3.91
57 58 0.034670 GACAAGGAGGGCTTGATGCT 60.035 55.000 0.00 0.00 42.39 3.79
58 59 0.034670 AGACAAGGAGGGCTTGATGC 60.035 55.000 0.00 0.00 41.94 3.91
59 60 2.503895 AAGACAAGGAGGGCTTGATG 57.496 50.000 0.00 0.00 35.88 3.07
60 61 2.507471 CCTAAGACAAGGAGGGCTTGAT 59.493 50.000 0.00 0.00 39.15 2.57
61 62 1.909302 CCTAAGACAAGGAGGGCTTGA 59.091 52.381 0.00 0.00 39.15 3.02
62 63 1.909302 TCCTAAGACAAGGAGGGCTTG 59.091 52.381 0.00 0.00 40.86 4.01
63 64 1.909986 GTCCTAAGACAAGGAGGGCTT 59.090 52.381 0.00 0.00 46.40 4.35
64 65 1.079658 AGTCCTAAGACAAGGAGGGCT 59.920 52.381 0.00 0.00 46.40 5.19
65 66 1.574263 AGTCCTAAGACAAGGAGGGC 58.426 55.000 0.00 0.00 46.40 5.19
66 67 2.237392 CCAAGTCCTAAGACAAGGAGGG 59.763 54.545 0.00 0.00 46.40 4.30
67 68 2.237392 CCCAAGTCCTAAGACAAGGAGG 59.763 54.545 4.32 0.00 46.40 4.30
68 69 3.173965 TCCCAAGTCCTAAGACAAGGAG 58.826 50.000 4.32 0.00 46.40 3.69
69 70 3.269592 TCCCAAGTCCTAAGACAAGGA 57.730 47.619 4.32 0.00 46.15 3.36
70 71 4.041691 TCTTTCCCAAGTCCTAAGACAAGG 59.958 45.833 0.00 0.00 46.15 3.61
71 72 5.228945 TCTTTCCCAAGTCCTAAGACAAG 57.771 43.478 0.00 0.00 46.15 3.16
72 73 5.640158 TTCTTTCCCAAGTCCTAAGACAA 57.360 39.130 0.00 0.00 46.15 3.18
73 74 5.374071 GTTTCTTTCCCAAGTCCTAAGACA 58.626 41.667 0.00 0.00 46.15 3.41
74 75 4.760715 GGTTTCTTTCCCAAGTCCTAAGAC 59.239 45.833 0.00 0.00 43.89 3.01
75 76 4.202535 GGGTTTCTTTCCCAAGTCCTAAGA 60.203 45.833 0.00 0.00 44.05 2.10
76 77 4.079970 GGGTTTCTTTCCCAAGTCCTAAG 58.920 47.826 0.00 0.00 44.05 2.18
77 78 3.725267 AGGGTTTCTTTCCCAAGTCCTAA 59.275 43.478 3.79 0.00 46.82 2.69
78 79 3.332968 AGGGTTTCTTTCCCAAGTCCTA 58.667 45.455 3.79 0.00 46.82 2.94
79 80 2.144450 AGGGTTTCTTTCCCAAGTCCT 58.856 47.619 3.79 0.00 46.82 3.85
80 81 2.677542 AGGGTTTCTTTCCCAAGTCC 57.322 50.000 3.79 0.00 46.82 3.85
81 82 4.726583 AGTTAGGGTTTCTTTCCCAAGTC 58.273 43.478 3.79 0.00 46.82 3.01
82 83 4.808767 AGTTAGGGTTTCTTTCCCAAGT 57.191 40.909 3.79 0.00 46.82 3.16
83 84 7.093902 GGAATAAGTTAGGGTTTCTTTCCCAAG 60.094 40.741 3.79 0.00 46.82 3.61
84 85 6.722590 GGAATAAGTTAGGGTTTCTTTCCCAA 59.277 38.462 3.79 0.00 46.82 4.12
85 86 6.250711 GGAATAAGTTAGGGTTTCTTTCCCA 58.749 40.000 3.79 0.00 46.82 4.37
86 87 5.356190 CGGAATAAGTTAGGGTTTCTTTCCC 59.644 44.000 0.00 0.00 44.90 3.97
87 88 5.942236 ACGGAATAAGTTAGGGTTTCTTTCC 59.058 40.000 0.00 0.00 0.00 3.13
88 89 6.877855 AGACGGAATAAGTTAGGGTTTCTTTC 59.122 38.462 0.00 0.00 0.00 2.62
89 90 6.776744 AGACGGAATAAGTTAGGGTTTCTTT 58.223 36.000 0.00 0.00 0.00 2.52
90 91 6.212993 AGAGACGGAATAAGTTAGGGTTTCTT 59.787 38.462 0.00 0.00 0.00 2.52
91 92 5.720520 AGAGACGGAATAAGTTAGGGTTTCT 59.279 40.000 0.00 0.00 0.00 2.52
92 93 5.975282 AGAGACGGAATAAGTTAGGGTTTC 58.025 41.667 0.00 0.00 0.00 2.78
93 94 5.720520 AGAGAGACGGAATAAGTTAGGGTTT 59.279 40.000 0.00 0.00 0.00 3.27
94 95 5.270794 AGAGAGACGGAATAAGTTAGGGTT 58.729 41.667 0.00 0.00 0.00 4.11
95 96 4.869451 AGAGAGACGGAATAAGTTAGGGT 58.131 43.478 0.00 0.00 0.00 4.34
96 97 5.134661 AGAGAGAGACGGAATAAGTTAGGG 58.865 45.833 0.00 0.00 0.00 3.53
97 98 6.702716 AAGAGAGAGACGGAATAAGTTAGG 57.297 41.667 0.00 0.00 0.00 2.69
98 99 6.975772 CCAAAGAGAGAGACGGAATAAGTTAG 59.024 42.308 0.00 0.00 0.00 2.34
99 100 6.662234 TCCAAAGAGAGAGACGGAATAAGTTA 59.338 38.462 0.00 0.00 0.00 2.24
100 101 5.480772 TCCAAAGAGAGAGACGGAATAAGTT 59.519 40.000 0.00 0.00 0.00 2.66
101 102 5.017490 TCCAAAGAGAGAGACGGAATAAGT 58.983 41.667 0.00 0.00 0.00 2.24
102 103 5.584253 TCCAAAGAGAGAGACGGAATAAG 57.416 43.478 0.00 0.00 0.00 1.73
103 104 5.656859 TCATCCAAAGAGAGAGACGGAATAA 59.343 40.000 0.00 0.00 0.00 1.40
104 105 5.201243 TCATCCAAAGAGAGAGACGGAATA 58.799 41.667 0.00 0.00 0.00 1.75
105 106 4.026744 TCATCCAAAGAGAGAGACGGAAT 58.973 43.478 0.00 0.00 0.00 3.01
106 107 3.431415 TCATCCAAAGAGAGAGACGGAA 58.569 45.455 0.00 0.00 0.00 4.30
107 108 3.087370 TCATCCAAAGAGAGAGACGGA 57.913 47.619 0.00 0.00 0.00 4.69
108 109 4.399004 AATCATCCAAAGAGAGAGACGG 57.601 45.455 0.00 0.00 0.00 4.79
109 110 5.414360 TCAAATCATCCAAAGAGAGAGACG 58.586 41.667 0.00 0.00 0.00 4.18
110 111 7.173907 TGTTTCAAATCATCCAAAGAGAGAGAC 59.826 37.037 0.00 0.00 0.00 3.36
111 112 7.226441 TGTTTCAAATCATCCAAAGAGAGAGA 58.774 34.615 0.00 0.00 0.00 3.10
112 113 7.444629 TGTTTCAAATCATCCAAAGAGAGAG 57.555 36.000 0.00 0.00 0.00 3.20
113 114 7.040201 CCTTGTTTCAAATCATCCAAAGAGAGA 60.040 37.037 0.00 0.00 0.00 3.10
114 115 7.040201 TCCTTGTTTCAAATCATCCAAAGAGAG 60.040 37.037 0.00 0.00 0.00 3.20
115 116 6.777091 TCCTTGTTTCAAATCATCCAAAGAGA 59.223 34.615 0.00 0.00 0.00 3.10
116 117 6.985117 TCCTTGTTTCAAATCATCCAAAGAG 58.015 36.000 0.00 0.00 0.00 2.85
117 118 6.975196 TCCTTGTTTCAAATCATCCAAAGA 57.025 33.333 0.00 0.00 0.00 2.52
118 119 7.609056 AGATCCTTGTTTCAAATCATCCAAAG 58.391 34.615 0.00 0.00 0.00 2.77
119 120 7.543359 AGATCCTTGTTTCAAATCATCCAAA 57.457 32.000 0.00 0.00 0.00 3.28
120 121 8.827832 ATAGATCCTTGTTTCAAATCATCCAA 57.172 30.769 0.00 0.00 0.00 3.53
121 122 8.277197 AGATAGATCCTTGTTTCAAATCATCCA 58.723 33.333 0.00 0.00 0.00 3.41
122 123 8.688747 AGATAGATCCTTGTTTCAAATCATCC 57.311 34.615 0.00 0.00 0.00 3.51
127 128 9.911788 ACACATAGATAGATCCTTGTTTCAAAT 57.088 29.630 0.00 0.00 0.00 2.32
148 149 9.709495 ACACAAATGCAAATAAAAGATACACAT 57.291 25.926 0.00 0.00 0.00 3.21
149 150 8.976471 CACACAAATGCAAATAAAAGATACACA 58.024 29.630 0.00 0.00 0.00 3.72
150 151 8.977505 ACACACAAATGCAAATAAAAGATACAC 58.022 29.630 0.00 0.00 0.00 2.90
151 152 9.539825 AACACACAAATGCAAATAAAAGATACA 57.460 25.926 0.00 0.00 0.00 2.29
152 153 9.796062 CAACACACAAATGCAAATAAAAGATAC 57.204 29.630 0.00 0.00 0.00 2.24
153 154 9.755804 TCAACACACAAATGCAAATAAAAGATA 57.244 25.926 0.00 0.00 0.00 1.98
154 155 8.659925 TCAACACACAAATGCAAATAAAAGAT 57.340 26.923 0.00 0.00 0.00 2.40
155 156 8.659925 ATCAACACACAAATGCAAATAAAAGA 57.340 26.923 0.00 0.00 0.00 2.52
156 157 9.719279 AAATCAACACACAAATGCAAATAAAAG 57.281 25.926 0.00 0.00 0.00 2.27
157 158 9.499585 CAAATCAACACACAAATGCAAATAAAA 57.500 25.926 0.00 0.00 0.00 1.52
158 159 8.886719 TCAAATCAACACACAAATGCAAATAAA 58.113 25.926 0.00 0.00 0.00 1.40
159 160 8.429493 TCAAATCAACACACAAATGCAAATAA 57.571 26.923 0.00 0.00 0.00 1.40
160 161 7.710044 ACTCAAATCAACACACAAATGCAAATA 59.290 29.630 0.00 0.00 0.00 1.40
161 162 6.539464 ACTCAAATCAACACACAAATGCAAAT 59.461 30.769 0.00 0.00 0.00 2.32
162 163 5.873712 ACTCAAATCAACACACAAATGCAAA 59.126 32.000 0.00 0.00 0.00 3.68
163 164 5.291371 CACTCAAATCAACACACAAATGCAA 59.709 36.000 0.00 0.00 0.00 4.08
164 165 4.804665 CACTCAAATCAACACACAAATGCA 59.195 37.500 0.00 0.00 0.00 3.96
165 166 4.805192 ACACTCAAATCAACACACAAATGC 59.195 37.500 0.00 0.00 0.00 3.56
166 167 6.890663 AACACTCAAATCAACACACAAATG 57.109 33.333 0.00 0.00 0.00 2.32
167 168 6.534793 GGAAACACTCAAATCAACACACAAAT 59.465 34.615 0.00 0.00 0.00 2.32
168 169 5.866633 GGAAACACTCAAATCAACACACAAA 59.133 36.000 0.00 0.00 0.00 2.83
169 170 5.406649 GGAAACACTCAAATCAACACACAA 58.593 37.500 0.00 0.00 0.00 3.33
170 171 4.142271 GGGAAACACTCAAATCAACACACA 60.142 41.667 0.00 0.00 0.00 3.72
171 172 4.097892 AGGGAAACACTCAAATCAACACAC 59.902 41.667 0.00 0.00 0.00 3.82
172 173 4.277476 AGGGAAACACTCAAATCAACACA 58.723 39.130 0.00 0.00 0.00 3.72
173 174 4.554723 CGAGGGAAACACTCAAATCAACAC 60.555 45.833 0.00 0.00 34.66 3.32
174 175 3.563808 CGAGGGAAACACTCAAATCAACA 59.436 43.478 0.00 0.00 34.66 3.33
175 176 3.609409 GCGAGGGAAACACTCAAATCAAC 60.609 47.826 0.00 0.00 34.66 3.18
176 177 2.552315 GCGAGGGAAACACTCAAATCAA 59.448 45.455 0.00 0.00 34.66 2.57
177 178 2.151202 GCGAGGGAAACACTCAAATCA 58.849 47.619 0.00 0.00 34.66 2.57
178 179 2.151202 TGCGAGGGAAACACTCAAATC 58.849 47.619 0.00 0.00 34.66 2.17
179 180 2.270352 TGCGAGGGAAACACTCAAAT 57.730 45.000 0.00 0.00 34.66 2.32
180 181 2.270352 ATGCGAGGGAAACACTCAAA 57.730 45.000 0.00 0.00 34.66 2.69
181 182 3.531538 GATATGCGAGGGAAACACTCAA 58.468 45.455 0.00 0.00 34.66 3.02
182 183 2.158957 GGATATGCGAGGGAAACACTCA 60.159 50.000 0.00 0.00 34.66 3.41
183 184 2.103263 AGGATATGCGAGGGAAACACTC 59.897 50.000 0.00 0.00 0.00 3.51
184 185 2.103263 GAGGATATGCGAGGGAAACACT 59.897 50.000 0.00 0.00 0.00 3.55
185 186 2.103263 AGAGGATATGCGAGGGAAACAC 59.897 50.000 0.00 0.00 0.00 3.32
186 187 2.398588 AGAGGATATGCGAGGGAAACA 58.601 47.619 0.00 0.00 0.00 2.83
187 188 3.574826 ACTAGAGGATATGCGAGGGAAAC 59.425 47.826 0.00 0.00 0.00 2.78
188 189 3.574396 CACTAGAGGATATGCGAGGGAAA 59.426 47.826 0.00 0.00 0.00 3.13
189 190 3.157881 CACTAGAGGATATGCGAGGGAA 58.842 50.000 0.00 0.00 0.00 3.97
190 191 2.108425 ACACTAGAGGATATGCGAGGGA 59.892 50.000 0.00 0.00 0.00 4.20
191 192 2.520069 ACACTAGAGGATATGCGAGGG 58.480 52.381 0.00 0.00 0.00 4.30
192 193 3.570125 TGAACACTAGAGGATATGCGAGG 59.430 47.826 0.00 0.00 0.00 4.63
193 194 4.837896 TGAACACTAGAGGATATGCGAG 57.162 45.455 0.00 0.00 0.00 5.03
194 195 4.083271 CGATGAACACTAGAGGATATGCGA 60.083 45.833 0.00 0.00 0.00 5.10
195 196 4.162072 CGATGAACACTAGAGGATATGCG 58.838 47.826 0.00 0.00 0.00 4.73
196 197 4.920340 CACGATGAACACTAGAGGATATGC 59.080 45.833 0.00 0.00 0.00 3.14
197 198 6.078202 ACACGATGAACACTAGAGGATATG 57.922 41.667 0.00 0.00 0.00 1.78
198 199 6.547880 AGAACACGATGAACACTAGAGGATAT 59.452 38.462 0.00 0.00 0.00 1.63
199 200 5.886474 AGAACACGATGAACACTAGAGGATA 59.114 40.000 0.00 0.00 0.00 2.59
200 201 4.707448 AGAACACGATGAACACTAGAGGAT 59.293 41.667 0.00 0.00 0.00 3.24
201 202 4.079970 AGAACACGATGAACACTAGAGGA 58.920 43.478 0.00 0.00 0.00 3.71
202 203 4.442375 AGAACACGATGAACACTAGAGG 57.558 45.455 0.00 0.00 0.00 3.69
203 204 4.859798 GGAAGAACACGATGAACACTAGAG 59.140 45.833 0.00 0.00 0.00 2.43
204 205 4.523173 AGGAAGAACACGATGAACACTAGA 59.477 41.667 0.00 0.00 0.00 2.43
205 206 4.810790 AGGAAGAACACGATGAACACTAG 58.189 43.478 0.00 0.00 0.00 2.57
206 207 4.866508 AGGAAGAACACGATGAACACTA 57.133 40.909 0.00 0.00 0.00 2.74
207 208 3.753294 AGGAAGAACACGATGAACACT 57.247 42.857 0.00 0.00 0.00 3.55
208 209 3.607078 GCAAGGAAGAACACGATGAACAC 60.607 47.826 0.00 0.00 0.00 3.32
209 210 2.548057 GCAAGGAAGAACACGATGAACA 59.452 45.455 0.00 0.00 0.00 3.18
210 211 2.548057 TGCAAGGAAGAACACGATGAAC 59.452 45.455 0.00 0.00 0.00 3.18
211 212 2.807967 CTGCAAGGAAGAACACGATGAA 59.192 45.455 0.00 0.00 0.00 2.57
212 213 2.224281 ACTGCAAGGAAGAACACGATGA 60.224 45.455 0.00 0.00 39.30 2.92
213 214 2.146342 ACTGCAAGGAAGAACACGATG 58.854 47.619 0.00 0.00 39.30 3.84
214 215 2.550830 ACTGCAAGGAAGAACACGAT 57.449 45.000 0.00 0.00 39.30 3.73
215 216 2.364324 ACTACTGCAAGGAAGAACACGA 59.636 45.455 0.00 0.00 39.30 4.35
216 217 2.731976 GACTACTGCAAGGAAGAACACG 59.268 50.000 0.00 0.00 39.30 4.49
217 218 3.495001 GTGACTACTGCAAGGAAGAACAC 59.505 47.826 0.00 0.00 39.30 3.32
218 219 3.494398 GGTGACTACTGCAAGGAAGAACA 60.494 47.826 0.00 0.00 39.30 3.18
219 220 3.067833 GGTGACTACTGCAAGGAAGAAC 58.932 50.000 0.00 0.00 39.30 3.01
220 221 2.703536 TGGTGACTACTGCAAGGAAGAA 59.296 45.455 0.00 0.00 39.30 2.52
221 222 2.325484 TGGTGACTACTGCAAGGAAGA 58.675 47.619 0.00 0.00 39.30 2.87
222 223 2.839486 TGGTGACTACTGCAAGGAAG 57.161 50.000 0.00 0.00 39.30 3.46
223 224 2.290260 CCATGGTGACTACTGCAAGGAA 60.290 50.000 2.57 0.00 39.30 3.36
224 225 1.278985 CCATGGTGACTACTGCAAGGA 59.721 52.381 2.57 0.00 39.30 3.36
225 226 1.679944 CCCATGGTGACTACTGCAAGG 60.680 57.143 11.73 0.00 39.30 3.61
226 227 1.278985 TCCCATGGTGACTACTGCAAG 59.721 52.381 11.73 0.00 42.29 4.01
227 228 1.357137 TCCCATGGTGACTACTGCAA 58.643 50.000 11.73 0.00 0.00 4.08
228 229 1.210234 CATCCCATGGTGACTACTGCA 59.790 52.381 11.73 0.00 0.00 4.41
229 230 1.959042 CATCCCATGGTGACTACTGC 58.041 55.000 11.73 0.00 0.00 4.40
230 231 1.807755 CGCATCCCATGGTGACTACTG 60.808 57.143 11.73 4.39 0.00 2.74
231 232 0.465705 CGCATCCCATGGTGACTACT 59.534 55.000 11.73 0.00 0.00 2.57
232 233 0.178068 ACGCATCCCATGGTGACTAC 59.822 55.000 11.73 0.79 0.00 2.73
233 234 0.177836 CACGCATCCCATGGTGACTA 59.822 55.000 11.73 0.00 35.09 2.59
234 235 1.078214 CACGCATCCCATGGTGACT 60.078 57.895 11.73 0.00 35.09 3.41
235 236 2.764314 GCACGCATCCCATGGTGAC 61.764 63.158 11.73 0.00 35.09 3.67
236 237 2.438254 GCACGCATCCCATGGTGA 60.438 61.111 11.73 8.21 35.09 4.02
237 238 3.520862 GGCACGCATCCCATGGTG 61.521 66.667 11.73 4.31 35.74 4.17
238 239 4.045781 TGGCACGCATCCCATGGT 62.046 61.111 11.73 0.00 0.00 3.55
239 240 2.607411 TAGTGGCACGCATCCCATGG 62.607 60.000 12.71 4.14 44.14 3.66
240 241 0.747644 TTAGTGGCACGCATCCCATG 60.748 55.000 12.71 0.00 44.14 3.66
241 242 0.464373 CTTAGTGGCACGCATCCCAT 60.464 55.000 12.71 0.00 44.14 4.00
242 243 1.078497 CTTAGTGGCACGCATCCCA 60.078 57.895 12.71 0.00 44.14 4.37
243 244 1.078426 ACTTAGTGGCACGCATCCC 60.078 57.895 12.71 0.00 44.14 3.85
244 245 0.673644 ACACTTAGTGGCACGCATCC 60.674 55.000 17.21 0.00 44.14 3.51
245 246 1.135972 CAACACTTAGTGGCACGCATC 60.136 52.381 17.21 0.00 44.14 3.91
246 247 0.874390 CAACACTTAGTGGCACGCAT 59.126 50.000 17.21 0.00 44.14 4.73
247 248 1.163420 CCAACACTTAGTGGCACGCA 61.163 55.000 17.21 0.90 44.14 5.24
248 249 1.164041 ACCAACACTTAGTGGCACGC 61.164 55.000 17.21 0.00 37.94 5.34
249 250 0.586319 CACCAACACTTAGTGGCACG 59.414 55.000 17.21 0.15 37.94 5.34
250 251 0.310854 GCACCAACACTTAGTGGCAC 59.689 55.000 17.21 10.29 37.94 5.01
251 252 2.714259 GCACCAACACTTAGTGGCA 58.286 52.632 17.21 0.00 37.94 4.92
266 267 1.077716 AGGCTACCGAATTGGGCAC 60.078 57.895 6.38 0.00 44.64 5.01
267 268 1.223487 GAGGCTACCGAATTGGGCA 59.777 57.895 6.38 0.00 44.64 5.36
268 269 1.526225 GGAGGCTACCGAATTGGGC 60.526 63.158 6.38 0.00 44.64 5.36
269 270 1.148498 GGGAGGCTACCGAATTGGG 59.852 63.158 0.00 4.73 44.64 4.12
270 271 1.148498 GGGGAGGCTACCGAATTGG 59.852 63.158 10.33 0.00 46.41 3.16
271 272 1.148498 GGGGGAGGCTACCGAATTG 59.852 63.158 10.33 0.00 0.00 2.32
272 273 1.004361 AGGGGGAGGCTACCGAATT 59.996 57.895 10.33 0.00 0.00 2.17
273 274 1.459730 GAGGGGGAGGCTACCGAAT 60.460 63.158 10.33 0.00 0.00 3.34
274 275 2.042230 GAGGGGGAGGCTACCGAA 60.042 66.667 10.33 0.00 0.00 4.30
275 276 4.153330 GGAGGGGGAGGCTACCGA 62.153 72.222 10.33 0.00 0.00 4.69
277 278 4.902258 GGGGAGGGGGAGGCTACC 62.902 77.778 7.44 7.44 0.00 3.18
292 293 4.344865 CACTTGGGGTGGGACGGG 62.345 72.222 0.00 0.00 41.90 5.28
293 294 2.824880 TTCACTTGGGGTGGGACGG 61.825 63.158 0.00 0.00 45.38 4.79
294 295 1.599797 GTTCACTTGGGGTGGGACG 60.600 63.158 0.00 0.00 45.38 4.79
295 296 0.112412 ATGTTCACTTGGGGTGGGAC 59.888 55.000 0.00 0.00 45.38 4.46
296 297 0.112218 CATGTTCACTTGGGGTGGGA 59.888 55.000 0.00 0.00 45.38 4.37
297 298 0.899717 CCATGTTCACTTGGGGTGGG 60.900 60.000 4.28 0.00 45.38 4.61
298 299 2.657297 CCATGTTCACTTGGGGTGG 58.343 57.895 4.28 0.00 45.38 4.61
303 304 2.299867 CCTTTTCCCCATGTTCACTTGG 59.700 50.000 5.11 5.11 39.94 3.61
304 305 3.230134 TCCTTTTCCCCATGTTCACTTG 58.770 45.455 0.00 0.00 0.00 3.16
305 306 3.611025 TCCTTTTCCCCATGTTCACTT 57.389 42.857 0.00 0.00 0.00 3.16
306 307 3.833559 ATCCTTTTCCCCATGTTCACT 57.166 42.857 0.00 0.00 0.00 3.41
307 308 4.202151 GCATATCCTTTTCCCCATGTTCAC 60.202 45.833 0.00 0.00 0.00 3.18
308 309 3.960102 GCATATCCTTTTCCCCATGTTCA 59.040 43.478 0.00 0.00 0.00 3.18
309 310 3.321968 GGCATATCCTTTTCCCCATGTTC 59.678 47.826 0.00 0.00 0.00 3.18
310 311 3.051880 AGGCATATCCTTTTCCCCATGTT 60.052 43.478 0.00 0.00 44.75 2.71
311 312 2.519691 AGGCATATCCTTTTCCCCATGT 59.480 45.455 0.00 0.00 44.75 3.21
312 313 3.249481 AGGCATATCCTTTTCCCCATG 57.751 47.619 0.00 0.00 44.75 3.66
319 320 6.298449 CCATGGGGAGAGGCATATCCTTTT 62.298 50.000 12.37 0.00 40.63 2.27
320 321 4.854832 CCATGGGGAGAGGCATATCCTTT 61.855 52.174 12.37 0.00 40.63 3.11
321 322 3.370233 CCATGGGGAGAGGCATATCCTT 61.370 54.545 12.37 0.00 40.63 3.36
322 323 1.838700 CCATGGGGAGAGGCATATCCT 60.839 57.143 12.37 0.00 42.59 3.24
323 324 0.622665 CCATGGGGAGAGGCATATCC 59.377 60.000 2.74 2.74 35.97 2.59
324 325 1.280421 GTCCATGGGGAGAGGCATATC 59.720 57.143 13.02 0.00 46.12 1.63
325 326 1.366319 GTCCATGGGGAGAGGCATAT 58.634 55.000 13.02 0.00 46.12 1.78
326 327 1.121407 CGTCCATGGGGAGAGGCATA 61.121 60.000 13.02 0.00 46.12 3.14
352 353 1.003718 ACCGTCCCTTTGCAGTAGC 60.004 57.895 0.00 0.00 42.57 3.58
400 401 0.673333 TAGGTGGTGCATGTTCGCAG 60.673 55.000 0.00 0.00 44.05 5.18
418 419 4.035675 CACTAGATGATCGCTCACAGTGTA 59.964 45.833 14.61 0.00 35.89 2.90
419 420 3.020274 ACTAGATGATCGCTCACAGTGT 58.980 45.455 0.00 0.00 33.22 3.55
447 448 0.250467 ACACCATCCACAGTGCTCAC 60.250 55.000 0.00 0.00 37.51 3.51
460 461 1.678728 CCATCACTACCGCAACACCAT 60.679 52.381 0.00 0.00 0.00 3.55
472 473 2.933492 GCGTAAGTTGTGGCCATCACTA 60.933 50.000 17.72 6.36 43.15 2.74
473 474 1.808411 CGTAAGTTGTGGCCATCACT 58.192 50.000 9.72 11.73 46.20 3.41
474 475 0.168128 GCGTAAGTTGTGGCCATCAC 59.832 55.000 9.72 9.19 43.08 3.06
475 476 0.958382 GGCGTAAGTTGTGGCCATCA 60.958 55.000 9.72 6.28 44.91 3.07
476 477 1.800681 GGCGTAAGTTGTGGCCATC 59.199 57.895 9.72 3.12 44.91 3.51
477 478 3.996614 GGCGTAAGTTGTGGCCAT 58.003 55.556 9.72 0.00 44.91 4.40
542 1167 1.555533 CCTTTTCTAAGAGCTCGGGGT 59.444 52.381 8.37 0.00 32.92 4.95
554 1179 3.840666 AGCTCTGATGGTCACCTTTTCTA 59.159 43.478 0.00 0.00 0.00 2.10
562 1187 2.746362 CCTTGAAAGCTCTGATGGTCAC 59.254 50.000 0.00 0.00 0.00 3.67
587 1212 0.319900 AGTGCCGGCATATCATCGAC 60.320 55.000 35.23 16.47 0.00 4.20
594 1219 2.494059 GATGTTACAGTGCCGGCATAT 58.506 47.619 35.23 22.21 0.00 1.78
596 1221 1.089481 CGATGTTACAGTGCCGGCAT 61.089 55.000 35.23 20.25 0.00 4.40
597 1222 1.739929 CGATGTTACAGTGCCGGCA 60.740 57.895 29.03 29.03 0.00 5.69
608 1265 2.755064 TCGCCCCGACCGATGTTA 60.755 61.111 0.00 0.00 0.00 2.41
621 1278 4.492160 TCATCTGTCGCCGTCGCC 62.492 66.667 0.00 0.00 35.26 5.54
628 1285 2.223272 TGTATCGTGAGTCATCTGTCGC 60.223 50.000 0.00 0.00 0.00 5.19
630 1287 7.197017 ACTTATTGTATCGTGAGTCATCTGTC 58.803 38.462 0.00 0.00 0.00 3.51
631 1288 7.101652 ACTTATTGTATCGTGAGTCATCTGT 57.898 36.000 0.00 0.00 0.00 3.41
642 1299 4.690122 GTGTGGCCTACTTATTGTATCGT 58.310 43.478 3.32 0.00 0.00 3.73
647 1304 3.196901 TCATCGTGTGGCCTACTTATTGT 59.803 43.478 3.32 0.00 0.00 2.71
649 1306 4.141711 ACATCATCGTGTGGCCTACTTATT 60.142 41.667 3.32 0.00 0.00 1.40
650 1307 3.388024 ACATCATCGTGTGGCCTACTTAT 59.612 43.478 3.32 0.00 0.00 1.73
651 1308 2.764010 ACATCATCGTGTGGCCTACTTA 59.236 45.455 3.32 0.00 0.00 2.24
652 1309 1.555075 ACATCATCGTGTGGCCTACTT 59.445 47.619 3.32 0.00 0.00 2.24
664 1321 1.717791 ATTGCCGCACCACATCATCG 61.718 55.000 0.00 0.00 0.00 3.84
669 1326 1.453745 CCCTATTGCCGCACCACAT 60.454 57.895 0.00 0.00 0.00 3.21
671 1328 3.518068 GCCCTATTGCCGCACCAC 61.518 66.667 0.00 0.00 0.00 4.16
672 1329 4.813235 GGCCCTATTGCCGCACCA 62.813 66.667 0.00 0.00 42.54 4.17
681 1338 2.044352 GCAACACCCGGCCCTATT 60.044 61.111 0.00 0.00 0.00 1.73
683 1340 3.561120 CTTGCAACACCCGGCCCTA 62.561 63.158 0.00 0.00 0.00 3.53
685 1342 4.966787 TCTTGCAACACCCGGCCC 62.967 66.667 0.00 0.00 0.00 5.80
688 1345 2.203280 TGGTCTTGCAACACCCGG 60.203 61.111 19.74 0.00 0.00 5.73
689 1346 2.892334 CGTGGTCTTGCAACACCCG 61.892 63.158 19.74 17.61 0.00 5.28
697 1354 0.951558 AACATCCAACGTGGTCTTGC 59.048 50.000 0.00 0.00 39.03 4.01
702 1359 1.172180 CCTGCAACATCCAACGTGGT 61.172 55.000 0.00 0.00 39.03 4.16
707 1364 0.242017 GTCAGCCTGCAACATCCAAC 59.758 55.000 0.00 0.00 0.00 3.77
711 1368 3.044059 GCGGTCAGCCTGCAACATC 62.044 63.158 0.00 0.00 40.81 3.06
730 1387 2.813908 CGTCCTTGCGGTAGTGCC 60.814 66.667 0.00 0.00 0.00 5.01
777 1435 4.347453 CACTTTGCAGCACCCCGC 62.347 66.667 0.00 0.00 42.91 6.13
778 1436 4.347453 GCACTTTGCAGCACCCCG 62.347 66.667 0.00 0.00 44.26 5.73
805 1463 2.930019 CCTCTGTGTGGCCCCTCA 60.930 66.667 0.00 0.00 0.00 3.86
826 1484 1.908340 ATCAGCCTCAGTGCCTCACC 61.908 60.000 0.00 0.00 34.49 4.02
832 1490 0.805322 CTCGTGATCAGCCTCAGTGC 60.805 60.000 0.00 0.00 0.00 4.40
833 1491 0.529833 ACTCGTGATCAGCCTCAGTG 59.470 55.000 0.00 0.00 0.00 3.66
834 1492 0.814457 GACTCGTGATCAGCCTCAGT 59.186 55.000 0.00 0.00 0.00 3.41
835 1493 0.248417 CGACTCGTGATCAGCCTCAG 60.248 60.000 0.00 0.00 0.00 3.35
836 1494 0.676782 TCGACTCGTGATCAGCCTCA 60.677 55.000 0.00 0.00 0.00 3.86
837 1495 0.248296 GTCGACTCGTGATCAGCCTC 60.248 60.000 8.70 0.00 0.00 4.70
838 1496 0.678366 AGTCGACTCGTGATCAGCCT 60.678 55.000 13.58 0.00 0.00 4.58
839 1497 0.524392 CAGTCGACTCGTGATCAGCC 60.524 60.000 16.96 0.00 0.00 4.85
971 1789 2.364448 GCCGGGAGAGGGAGTTCT 60.364 66.667 2.18 0.00 0.00 3.01
1623 2446 2.240279 GCGGCCTCCTCTTCTCTTATA 58.760 52.381 0.00 0.00 0.00 0.98
1778 2601 4.989279 AAGAACTTGCACAGTTGTGAAT 57.011 36.364 16.01 0.00 46.53 2.57
1821 2644 2.946785 TCTTAAAGTCCCCCGCAAAAA 58.053 42.857 0.00 0.00 0.00 1.94
1822 2645 2.624364 GTTCTTAAAGTCCCCCGCAAAA 59.376 45.455 0.00 0.00 0.00 2.44
1823 2646 2.232399 GTTCTTAAAGTCCCCCGCAAA 58.768 47.619 0.00 0.00 0.00 3.68
1824 2647 1.143277 TGTTCTTAAAGTCCCCCGCAA 59.857 47.619 0.00 0.00 0.00 4.85
1825 2648 0.766131 TGTTCTTAAAGTCCCCCGCA 59.234 50.000 0.00 0.00 0.00 5.69
1826 2649 1.162698 GTGTTCTTAAAGTCCCCCGC 58.837 55.000 0.00 0.00 0.00 6.13
1827 2650 2.038033 TCAGTGTTCTTAAAGTCCCCCG 59.962 50.000 0.00 0.00 0.00 5.73
1828 2651 3.072622 ACTCAGTGTTCTTAAAGTCCCCC 59.927 47.826 0.00 0.00 0.00 5.40
1829 2652 4.353383 ACTCAGTGTTCTTAAAGTCCCC 57.647 45.455 0.00 0.00 0.00 4.81
1830 2653 5.123936 ACAACTCAGTGTTCTTAAAGTCCC 58.876 41.667 0.00 0.00 36.63 4.46
1831 2654 7.964604 ATACAACTCAGTGTTCTTAAAGTCC 57.035 36.000 0.00 0.00 36.63 3.85
1840 2663 9.922305 GCTTTGAATATATACAACTCAGTGTTC 57.078 33.333 0.00 0.00 36.63 3.18
1841 2664 9.672673 AGCTTTGAATATATACAACTCAGTGTT 57.327 29.630 0.00 0.00 39.92 3.32
1873 2696 7.164122 AGAAACTGACAGTCATCACATTACAT 58.836 34.615 8.93 0.00 0.00 2.29
1874 2697 6.524734 AGAAACTGACAGTCATCACATTACA 58.475 36.000 8.93 0.00 0.00 2.41
1875 2698 7.426929 AAGAAACTGACAGTCATCACATTAC 57.573 36.000 8.93 0.00 0.00 1.89
1876 2699 7.498900 ACAAAGAAACTGACAGTCATCACATTA 59.501 33.333 8.93 0.00 0.00 1.90
1917 2743 7.446106 TCAGAAATAAGGTGCCTAATTCCTA 57.554 36.000 0.00 0.00 0.00 2.94
1918 2744 6.327386 TCAGAAATAAGGTGCCTAATTCCT 57.673 37.500 0.00 0.00 0.00 3.36
1919 2745 7.404671 TTTCAGAAATAAGGTGCCTAATTCC 57.595 36.000 0.00 0.00 0.00 3.01
1920 2746 9.875691 AATTTTCAGAAATAAGGTGCCTAATTC 57.124 29.630 0.00 0.00 34.44 2.17
1921 2747 9.875691 GAATTTTCAGAAATAAGGTGCCTAATT 57.124 29.630 0.00 0.00 34.44 1.40
1922 2748 8.190784 CGAATTTTCAGAAATAAGGTGCCTAAT 58.809 33.333 0.00 0.00 34.44 1.73
1923 2749 7.362574 CCGAATTTTCAGAAATAAGGTGCCTAA 60.363 37.037 0.00 0.00 34.44 2.69
1928 2754 4.793216 CGCCGAATTTTCAGAAATAAGGTG 59.207 41.667 0.00 2.07 36.74 4.00
1940 2766 3.060761 GGAATGCTTTTCGCCGAATTTTC 59.939 43.478 0.00 0.40 38.05 2.29
1941 2767 2.993220 GGAATGCTTTTCGCCGAATTTT 59.007 40.909 0.00 0.00 38.05 1.82
1991 2819 3.764237 TTAGTTTTGCCTCTTCGGAGT 57.236 42.857 0.00 0.00 40.29 3.85
2038 2866 6.772716 AGATCAACTGACAACTAACATGGTTT 59.227 34.615 0.00 0.00 0.00 3.27
2041 2869 8.498054 AATAGATCAACTGACAACTAACATGG 57.502 34.615 0.00 0.00 0.00 3.66
2145 3081 1.880027 CTGCAACTAAGGTGGTGGTTC 59.120 52.381 0.00 0.00 0.00 3.62
2149 3085 2.254546 TGTCTGCAACTAAGGTGGTG 57.745 50.000 0.00 0.00 0.00 4.17
2263 3199 1.616159 TTGTGCTCCCTTTAGCCAAC 58.384 50.000 0.00 0.00 42.05 3.77
2331 3267 0.752658 GGCTTGGCCCCATTTACATC 59.247 55.000 0.00 0.00 44.06 3.06
2454 3390 2.226912 CACTATCTAGCGGGCTGTAGTC 59.773 54.545 2.86 0.00 0.00 2.59
2474 3410 3.322211 AATTGGGTATTCGACGTGTCA 57.678 42.857 0.00 0.00 0.00 3.58
2601 3537 3.128764 TGCGAGGCTTCATATATACTCCG 59.871 47.826 0.00 0.00 0.00 4.63
2603 3539 4.865365 GGTTGCGAGGCTTCATATATACTC 59.135 45.833 0.00 0.00 0.00 2.59
2606 3542 3.580895 TGGGTTGCGAGGCTTCATATATA 59.419 43.478 0.00 0.00 0.00 0.86
2607 3543 2.371841 TGGGTTGCGAGGCTTCATATAT 59.628 45.455 0.00 0.00 0.00 0.86
2608 3544 1.765904 TGGGTTGCGAGGCTTCATATA 59.234 47.619 0.00 0.00 0.00 0.86
2653 3589 3.506067 CGAGGTTTTAGTTCAAATGGCCT 59.494 43.478 3.32 0.00 0.00 5.19
2658 3594 7.745620 AGATTGACGAGGTTTTAGTTCAAAT 57.254 32.000 0.00 0.00 0.00 2.32
2679 3615 3.863086 ACTCCCTCCGATCCATAAAGAT 58.137 45.455 0.00 0.00 0.00 2.40
2681 3617 5.746990 ATTACTCCCTCCGATCCATAAAG 57.253 43.478 0.00 0.00 0.00 1.85
2682 3618 7.808279 AATATTACTCCCTCCGATCCATAAA 57.192 36.000 0.00 0.00 0.00 1.40
2748 3684 3.508840 GGTGGGCGCTCCGAAATG 61.509 66.667 3.94 0.00 38.76 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.