>input_sequence_68709
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---------------------------------------------------------GGACAACCAGTCAACCAGAGAGG
AGAGCG-----CGTCGCGTCGCGCGCACGAGCAGGCGCCGGAAACATGGCCACGGCGGTGCACGCGAGACGGCTGGCGGC
CTCGCGCGACGACCCTTCGGCCGCCCCGACGTCGGGGAGGTCCCAGTTCGACCTCTCGTCGGGGGCGGCCACCGCCGTGG
TGTTCCTCTCCATCATCCTCTGCTTCATCCTGCTCTGCACCTACTGCCGCTGCGCTCGGCAGCGCGCCATCGCGGCCGCG
CGCGGCGGCCGCGCCATGCGCCACGGCTTCCCGAGCGCCCTCCTCCGCCCGGCCGACGGCGCGGCGCTGCCCGTGGTGCG
CTACGCCGACGCCGGCGCCGGCGCCAAGAAGGGGCAGCAGCCGGAGGGGGACTGCCCCGTCTGCCTCGAGGCCTTCGGCG
ACGACGACGGCGTCAAGGTCGTCCCGGCGTGCGGCCACGTCTTCCACGCCCCCTGCATCGACCGGTGGCTCGACGTGCGC
AACTCGTGCCCCGTCTGCCGGTGCGTCGTGGTCTGCCACTACGCCGACCGCGCAGGCCCGGGTGCCGGCGACGACGGCGA
CGACCAGGAGGTCGTCCTGGAGCGCGTGGTCGCCATGATCGAAGCTATAAGAGAAGAGGAGGCCGCGGCGAGGCGCGCGC
CGGCGACCGCGAGGGTCCGGGGGTGATGACGCGTACGTGCCTCGGGTTGTACAGGCACAGCTAACCTAACTGGGTAAGTT
TCTGTTGTAGCTTTGGTGTGATAGTACAGAGTGATAATAAATTCACAACTGTGCA-------------------------
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>chr1A_1_TraesCS1A01G207000
TGATTCCCCAAGTGAATCATTAAGACTTGCACTGATGGAGAAAAATGGCTTCATAAAAGCATCAAGCCCTCCTTGTCTTA
GGACTTGGGAAAGAAACCCTAACTTATTCCGTCTCTCTCTTTGGATGATTTGAAACAAGGATCTATCTATGTGTATCTTT
TATTTGCATTTGTGTGTTGATTTGAGTGTTTCCCTCGCATATCCTCTAGTGTTCATCGTGTTCTTCCTTGCAGTAGTCAC
CATGGGATGCGTGCCACTAAGTGTTGGTGCCCAATTCGGTAGCCTCCCCCTCCCCGTCCCACCCCAAGTGAACATGGGGA
AAAGGATATGCCTCTCCCCATGGACGGTGGCCGCTACTGCAAAGGGACGGTGGGCGCCACGACAAGCAAGGGTGGCGGCG
CTGCGAACATGCACCACCTACACTGTGAGCGATCATCTAGTGATGATGTGAGCACTGTGGATGGTGTTGCGGTAGTGATG
GCCACAACTTACGCCTGGTGCTACAAGGCCGACACTTGA-----------------------------------------
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-----------------------TGGGGCGTGGCGCTGCAAAGCCAACCCCGAGCTCTTAGAAAAGGTGACCATCAGAGC
TTTCAAGGTTCGTCGATGATAT--------------------------------GCCGGCACTGTAACATCGGTCGGGGC
GACGGCGACAGATGACTCACGATACAATAAGTAGGCCACACGATGATGTGGTGCGGCAATAGGGCCGGGTGTTGCAAGAC
CACGTTGGATGTTGCAGGCTGACCGCGGCACTACCGCAAGGACGACGAGCG-CGCTGCAGGAGGGTCAATGGGCGCGGGG
TGCTGCAAAGTGCCAGCTGCCGTGAGGGGCCACACAGAGGTGCGGTGAGGCACTGAGGCTGATCACGAGTCG--------
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--------------------------------------------------------------ACTGATTTCCTAAGAAAA
AATCGGCTGACCCGCGTAGCCCAAAACCTAGCATC----------TCATCACAAAACTAAACTCGCGTCCCATTACACGG
AAAAAAAGGGCCACCTGTAAGGCCGTGTAGAACTCCCTCTCCCGGCCTGTGGCCTCCGGACAACCAGTCAACCAGAGAGG
AGAGCG-----CGTCGCGTCGCGCGCACGAGCAGGCGCCGGAAACATGGCCACGGCGGTGCACGCGAGACGGCTGGCGGC
CTCGCGCGACGACCCTTCGGCCGCCCCGACGTCGGGGAGGTCCCAGTTCGACCTCTCGTCGGGGGCGGCCACCGCCGTGG
TGTTCCTCTCCATCATCCTCTGCTTCATCCTGCTCTGCACCTACTGCCGCTGCGCTCGGCAGCGCGCCATCGCGGCCGCG
CGCGGCGGCCGCGCCATGCGCCACGGCTTCCCGAGCGCCCTCCTCCGCCCGGCCGACGGCGCGGCGCTGCCCGTGGTGCG
CTACGCCGACGCCGGCGCCGGCGCCAAGAAGGGGCAGCAGCCGGAGGGGGACTGCCCCGTCTGCCTCGAGGCCTTCGGCG
ACGACGACGGCGTCAAGGTCGTCCCGGCGTGCGGCCACGTCTTCCACGCCCCCTGCATCGACCGGTGGCTCGACGTGCGC
AACTCGTGCCCCGTCTGCCGGTGCGTCGTGGTCTGCCACTACGCCGACCGCGCAGGCCCGGGTGCCGGCGACGACGGCGA
CGACCAGGAGGTCGTCCTGGAGCGCGTGGTCGCCATGATCGAAGCTATAAGAGAAGAGGAGGCCGCGGCGAGGCGCGCGC
CGGCGACCGCGAGGGTCCGGGGGTGATGACGCGTACGTGCCTCGGGTTGTACAGGCACAGCTAACCTAACTGGGTAAGTT
TCTGTTGTAGCTTTGGTGTGATAGTACAGAGTGATAATAAATTCACAACTGTGCAAGTTCTTTTAAGAACACTGAGTTTT
TTTTTTTTGCGGGGGACTTTAAGAACACTGAGTTGTATATATTCAAAGCTATATAATGT---AATGTGATGACTGTCAGT
TTCTTTGTTCAATAAAAATGGCTAGGAATTAGGCACCTTATTTCTGAAAATTCGGCGAAAAGCATTCCTAAGTTTGCTGG
TCTATT--ACCGTGGTAGACTCCGAAGAGGCAAAACTAATGCAAATATATAAGAAAAGGTATTATAAACC--ATGTTAGT
TGTCAGTTGATCTATTTTTTT-TATTAATTGTGTTTGTATTTGTTAGGATATTTTGTTAAATGTA----TAGA-------
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--------------TGTTAATCATTTTGAGTATGTATAACGAACCACCACCTTAGTTGCAGACATTATAAACCAGCTAAG
CTATATTCTCGAGGCTATCATACAATTGTACAGGCATAGACAGCAAGCCAGAAATTGAGAAAGAAGTCTCCTCCTTGTGT
TGGCTAAAGGGAGCACAAATCATTGACCCCTTCCTCGCCTGACCCTCCATTTTCAGAATATAAATAGATGTAAATGGGGC
CAAGCCAACTAGGAGACGTTTTGTTCTATATTGCTTATATTATTGGATAGGTATTAGGTGGTTGCTTTCCAAATCCAATT
GTTGCCTGCGCCAATTTGTCACTTGGCAAGACTACAGCCCGCTAGATAGTGACACGTCGAATACCCAATTTGAGCTTTCG
CCAATTATAAATAAATAAAAATAAAATAAATTGAGCTATCTCATCCCAGTTCCTATCAGATATGATTTTTTAGGTAGAGT
AGCATACTAGTTTGTACGGAGTATATATGAAGCCTCGCAACCCATATGGCTTAATAATTACTCCCTCCAGGCCATTTGAA
CTAAAACCTCGTCAATCTTTATGGATCGGAGGGAGTAATATTATGTTAGGTACTAAAATTATTTGTCTAAAATACATGCA
GCACATTTCGGAGCGCCCACCGCATGTTTTCAAGATCAGTTCAGTTCA
>chr1B_328
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-------ATGCCTCTTCCCATGGCCGGTGGCCACTACTGCAAAGGGACGGTTGGCGCCACGACGAGCTAGGGGGGCGGCG
TTGCGAACATGCACCACCCGCACTGTGAGCGGTCATCTAGTGATGATATGAGCACTGTGGCTGGTGTTGCAGCGAGACCG
GCCACAACTTGCGCCTGGTGCTACAAGGCCGACACTTGATGGTCACCCTGTGCGTTCGGTTTATTCGGTTTACATGGTTT
GGTTTATACGATTTTTCGGTTTATAATACTTCGGTAAATACGGTATGAAATTAAAATACAGTTTGGTTTCGGTATATACC
AAATTATTTCGGTATGGTTTCGGTATATACCATAAAAACCAAAGTTGACGTGAATTTGAAAATGACATAATAATAATTTG
CAAATTTATGACTCAAAACACATACTATTTTACACAAATAGTATATAACTATATATATAAGTATATATGCATGCATTGAT
TCATCTGTTGATGGTTATGGACGTGCTTAGCATTTCAACAAGAGAAAAATGACTATGTTACAAGAAAATTTTACATGTTT
AGTAATGAATTTGACTCATGTACAAGAAAAATGACAATTTGTATGGTTGTTCATCTCAAGAAATATAAATTTATTTTTTA
CTTCGGTTTATTCGGTTAACCGTTCGGTATTTTGGTATGTATATAAAAATCAAAGTTTAAATCGGTATGAAACGTTCATA
CTATACCGAAACCAGAAACCATAAAAACCATAAAATCGGTTCGGTTCGGTTTATTTTCGGTATAGTTTTTTGGTTCGGTT
TTTAAATGCACAGAGTGACTCAATGGGGCGTGGCGCTGCAAAGCCAGCCCCGAGCTCTCAGAAAAGCTGACCATCAGAGC
TTTCAAGGTTCCTCGATGGTGGTGCGATGATTGTGTCGATGCTTTAGGGGCACAGCCGGCACTGCAACATCGGTTGGCGC
GACGACCGCAGATGACTCGCGATCC----AGTAGGCCACAGGATGCTA-----CGGCGACATGGGTGGGTGTTACAAGCC
CACATTGAATGTTGCAAGTTGATCGCCGCACTACCGCAAGAACGACGAGCGACGCTGCAGGAGGGTCACTGTTGCAAGCC
C--------GTGCCAGCTGCCGCGAGGTGCCACACAGAGGTGCAGTGAG--------GCTGATCACGGACTTCCTGTGAG
CTCAACGCCCACGTACTACGAGGCTGCACCTCTGTGTGGGTTGTAAGTTGTAACCGCCGGGGGAGATGGGTGGGAAGGAT
GACCCGAGCATGGTTTTCCAATTTGGAAGGACCTGGCTAGATGTAATCGATGGCTGTCGACTACTGATTTCGTAAGAAAA
AATTGGCTGACCCGCGTAGCCCAAAACCTAGCACCTCACCAGTCATCATCACAAAACTAAACTCGCGTCCAATTACACGG
AGAAAAAGGGCCACCTGTGGG-------------------------CTGTGGCCTCCGGACAACCAGTCAACCAGAGAGG
AGAGCG-----CGTCTCGTCGCGCGCACGAGCAGGCGCCGGAAACATGGCCATGGCGGCGCACGCGAGACGGCTGGCGGC
CTCGCGCGACGACCCGTCGGCCGCCCCGACGTCGGGGAGGTCTCAGTTCGACCTCTCGTCGGGGGCGGCCACCGCCGTGG
TGTTCCTCTCCATCGTGCTCTGCTTCATCCTGCTCTGCACCTACTGCCGCTGCGCTCGGCAGCGCGCCATGGCGGCCGCG
CGCGGCGGCCGTGCCATGCGCCACGGCTTCCCGAGCGCCCTCCTCCGCCCAGCCGACGGCGCGGCGCTCCCCGTGGTGCG
CTACGCCGACGCCGGCGCCGGCGCCAAGAAGGGGCAGCAGCCCGAGGGGGACTGCCCCGTCTGCCTCGAGGCCTTCGGCG
ACGACGACGGCGTCAAGGTCGTCCCGGCGTGCGGCCACGTCTTCCACGCCCCCTGCATCGACCGGTGGCTCGACGTGCGC
AACTCATGCCCCGTCTGCCGGTGCGTCGTGGTCTGCCACTACGCCGGCCGCGCAGGCCCTGGTGCCGGCGACGACGGTGA
CGACCAGGAGATCGTGCTGGAGCGCGTGGTCGCCATGATCGAAGCGATAAGAGAAGAGGAGGCCGCGGCGAGGCGCGCGC
CGGCGACCGCGAGGGCCCGGGGGTGATGACGCGTACATGCCTGAGGGTGTACAGGCACAGCTAACCTAACTGGGTAAGTT
TATGTTTTAGCTTTGGTGTGATAGTACAGAGTGGTAATAACTTCACAATTGTGCAAATTCTCTTAAGAACACTGAGTT--
----------------------------------GTGTATGATCAAAGCATTATACATATAGAATGTGATGATTGTCAGT
TTCATTGTTCAATAAAAATAGC-------TATGAACCCTATTTCTCTAAATTCGGCGAATAGCATTCCTAAGTTTGCTGG
TCTGTTTCACCGTGGTAGGCTCCGAAGAGGCAAAACTAATGCAAAC---------AAGGTATTATTAATCAAATGTTAGT
TG-------ATGTAAAAATATATATTGATTATGTTAGCATTTGTTAGGATATTT-GTTAAATGTATACTCCCTCCGTTCC
GAATTAGTTGTCGCGGGTATGGATGTATCTAGATGTATTTTAGTTCTAGATACATCCATCTATGCGACGAGTAACTTGAA
ACGGAGGAAGTACTTGTTAATCATTTTGAATATATATAACCAACGACCACCTTAGTCGCAGACATTATAAACCAGGTAAG
CTGTATTCTCAAGGCTAT----CAATTATACATGCATAGACAGCCAGCCAGAAATTGAGAAAGAAGTCTCCTCCTTGT--
TGGCTAAAGG-AGCACAAATCATTGACCCCTTCCTCGCCTGATCCTCCATTTTCAGA--ATAAATAAATGTAAATGGGGC
CAAGCCAACTAGGAGACATTTTGTTCTATATTGCTTATATTATTGGATAGGTATTAGGTGGTTGCTTTCCAAATCCAATT
GTAGCCTGCGCCAATTTGTCACTTGGCAAAACTACAGCCCGCTAGATAGCGACACGTCGAATACCCAATTCGAGCTTTCG
CTAATAATAAATAAATAAATATAAAATAAATTGAGCTATCTTATCCCAGTTCCTATCAGATAGGATTTTTTAGGTAGAGT
AGCATACTAGTTTGTATGTAG---ATATGAAGCCTCGCAACCCATATGGCTTAATAATTACTCTCTCCGGTCCGTTTGAA
CTAAAACCTTGTCACTTATTATGAATTGGAGGGAGTAATATTATTTTAGGTACTATAATTATTTGTCTAAAATACATGCA
GCAGA-TTCGGAGCGCCCACCGCATGTTT-CAAGATCAGTTCAGTTCA
>chr1D_849
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-----------------------------------------------------------------CGAGTCG--------
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--------------------------------------------------------------ACTGATTTCCTAA-AAAA
AATGGGCTGACCCACATAGATCAAAACCTAGCATC----------TCATCACAAAACTAAACTCGCGTCCAATTACACGG
AAAAAAAGGGCCACCTGTAAGGCCGTGTGGAACTCCCTCTCCCGGCCTGTGGCCTCCGGACAACCAGTCAACCAGAGAGG
AGAGCGCGTCGCGTCGCGTCGCGCGCACGAGCAGGCGCCGGAAACATGGCCACGGCGGCGCACGCGAGACGGCTGGGGGC
CTCGCGCGACGATCCGTCGGCCGCCCCGACGTCGGGGAGGTCCCAGTTCGACCTCTCGTCGGGGGCGGCCACCGCCGTGG
TGTTCCTCTCCATCATCCTCTGCTTCATCCTGCTCTGCACCTACTGCCGCTGCGCTCGGCAGCGCGCCATGGCGGCCGCG
CGCGGCGGCCGCGCCATGCGCCACGGCTTCCCGAGCGCCCTCCTCCGCCCGGCCGACGGCGCGGCGCTCCCCGTGGTGCG
CTATGCCGACGCCGGCGCCGGCGCCAAGAAGGGGCAGCAGCCCGAGGGGGACTGCCCCGTCTGCCTCGAGGCCTTCGGCG
ACGACGATGGCGTCAAGGTCGTCCCGGCGTGCGGCCATGTCTTCCACGCCCCCTGCATCGACCGGTGGCTCGACGTGCGC
AACTCATGCCCAGTCTGCCGGTGCGTCGTGGTCTGCCACTACGCCGACCGCGCAGGCCCGGGTGCCAGCGACGACGCCGA
CGACCAGGAGATCGTCCTGGAGCGCGTGGTCGCCATGATCGAAGCGATAAGAGAAGAGGAGGCCGCGGCGAGGCGCGCGC
CGGCGACTGCGAGGGTCCGGGGGTGATGACGCGTACGTGCCTCGGGTTGTACAGGCACAGCTAACCTAACTGGGTAAGTT
TCTGTTGTAGCTTTGGCGTGATAGTACAGAGTGAT--------------TGTGCAAGTTCTCTTAAGAACACTGAGTT--
----------------------------------GTGTATGATCAAAGCAAT----ATATAGAATGTGATGATTGTCAGT
TTCATTGTTCAACAAAAATGGC-------TAGGAACCTTATTTCTCTAAATTCGGCGAAAAGCATTCCCAAGTTTGCTGG
TCTATTTCACCGTGGTAGGCTCCGAAGAGGCAAAAGTAATGCATACATATAAGAAAAAGTAATATTAATC--ATGTTAGT
TG-------ATCTATTTTTTT-ATTATGATATAGTAGTATTTGTTAGGATACTT-GTTAAAAGTACACGTAGT-------
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--------------TGCTAATGATTTTGAGTATGTATAAGCAACGGCCACCTTAGTTGCAGACATTATAAACCAGCTAAG
CTATATTCTCGAGGCTATCATACAAGTGTACAGGCATAGACAGCAAGCCAGAACTCGAGAAAGAAGTCTTCTCCTTG--T
TGGCTAAAGGGAGCACAAATCATTGACCCCTTCCTCGCCCGACCCTCCATTTTCAGAATATAAATAAATGTAAATGGGGC
CAAGCCAACTAGGAGACGTTTTGTTCTATATTGCTTATATTATTGGATAGGTATTAGGTGGTTGCTTTCCAAATCCAATT
GTAGCCTGCGCCAATTTGTCACTTGGCAAAACTACAGCCCGCTAGATAGCGACACGTCGAATACCCAATTCGAGCTCTCG
CCAATAATAAATAAATAAATATAAAATAAATTGAGCTATCTCATCCCAGTTCCTATCAGATAGGAT-TTTTAGGTAGAGT
AGCATACTAGTTTGTA----G---ATATGAAGCCTCGCAACCCATATGGCTTAATAATTACTCCCTCCGGGCATTTTGAA
CTAAAACCTCGTCACTTGTTATGGATCAGAGGGAGTAATATTATGTAAGGTACTATAATTATTTGTCAACAATACATGCA
GCAGATTTCGGAGCGCCCACCGCATGTTT-CAAGATCAATTCAGTTCA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS--------S-------S--------S------------------S-----------S---S----S-------
S-----------------SS-----------S---------------S------------S---------S-SSSSSSS-
----------S---------------------------------------------------------------------
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----------------------------------------------S-----------S-------S-------------
-----------S------S-SS------------------------------------------S---------S--S--
----S-SS----------S----S-SSSS-----------S----S-SSSSSS----S-S-S--SS-------S----S-
---S---S--------S-S---S---S-------------S---------------------------S--SSSSSS-SS
SSSSSSSSS-------------S----S---------------S-----SSSSSSSS-----------------------
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---S------------------------------------------------------------------S---------
----------------------------S---------------------------------------------------
----------------------------------------------------------S---------------------
---------------S----------------------------------------------------------------
----------------------------------------------------------------------S---------
--------------------------------------------------------------------S-----------
------------------------------------------S-------------------------------------
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-----S--------------------------------------------------------------------------
----------S----------------------------------S----------------------------------
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----------------------------------------S-------S------------S----------------SS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S---SS-------S-----SSSS-------------S-------
---S------------------SSSSSSS----S-----------SS---------------------------------
------------------S--------------------------S-------------------S--S-----------
--SSSSSSS-----------------S---S----S------------------S-----------------S-------
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----------------------------------------S---S-----------------------------------
------------------------------------------------------------------------------S-
------------------------------------------------------------------S-------------
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--S--------------------------S-------------------S--------------------S---------
-----S-------------S------------------------------------------S-----------------
----------------S-S--SSS--------------------------------------------S----S------
--------------S-SS-------------------------------------S------------------------
---S-------------------------S------------------
>forward_478
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----------------------------------------------------------GGATGGTGTTGCGGTAGTGA--
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>reverse_3267
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------------------------------------------------------------------GATGTAAATGGGGC
CAAGCC--------------------------------------------------------------------------
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