Multiple sequence alignment - TraesCS1A01G206500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G206500 chr1A 100.000 2611 0 0 1 2611 368802067 368804677 0.000000e+00 4822.0
1 TraesCS1A01G206500 chr1A 95.302 149 5 1 2465 2611 366564139 366563991 4.340000e-58 235.0
2 TraesCS1A01G206500 chr1D 92.469 2377 132 24 1 2340 295541143 295543509 0.000000e+00 3354.0
3 TraesCS1A01G206500 chr1B 93.253 1897 95 18 1 1889 397056643 397058514 0.000000e+00 2763.0
4 TraesCS1A01G206500 chr6A 96.479 142 5 0 2470 2611 221176669 221176810 4.340000e-58 235.0
5 TraesCS1A01G206500 chr7A 96.479 142 3 2 2470 2610 122691905 122692045 1.560000e-57 233.0
6 TraesCS1A01G206500 chr7A 94.000 150 7 2 2463 2611 640648609 640648757 2.610000e-55 226.0
7 TraesCS1A01G206500 chr4A 95.833 144 4 1 2468 2611 87463671 87463812 5.620000e-57 231.0
8 TraesCS1A01G206500 chr4A 96.429 140 4 1 2472 2611 16061363 16061225 2.020000e-56 230.0
9 TraesCS1A01G206500 chr4A 92.903 155 8 2 2457 2611 608860391 608860240 3.380000e-54 222.0
10 TraesCS1A01G206500 chr4A 92.308 52 4 0 2311 2362 72317924 72317975 1.000000e-09 75.0
11 TraesCS1A01G206500 chr5A 94.631 149 5 2 2466 2611 275502420 275502568 7.270000e-56 228.0
12 TraesCS1A01G206500 chr5A 94.595 148 7 1 2464 2611 633078784 633078930 7.270000e-56 228.0
13 TraesCS1A01G206500 chr5A 78.014 141 27 3 2098 2235 16529442 16529303 4.630000e-13 86.1
14 TraesCS1A01G206500 chr5A 78.519 135 25 4 2287 2419 652111738 652111606 4.630000e-13 86.1
15 TraesCS1A01G206500 chr7D 74.286 315 59 17 2057 2362 2647431 2647130 2.120000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G206500 chr1A 368802067 368804677 2610 False 4822 4822 100.000 1 2611 1 chr1A.!!$F1 2610
1 TraesCS1A01G206500 chr1D 295541143 295543509 2366 False 3354 3354 92.469 1 2340 1 chr1D.!!$F1 2339
2 TraesCS1A01G206500 chr1B 397056643 397058514 1871 False 2763 2763 93.253 1 1889 1 chr1B.!!$F1 1888

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
993 995 0.250234 CGACAATGGCTTGGAGGAGA 59.75 55.0 0.0 0.0 36.64 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2448 2499 0.10741 TTCCACAAACCAGTGCTCGT 60.107 50.0 0.0 0.0 38.18 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
321 322 1.829096 GGAGGAGGTAGGCGGAGAC 60.829 68.421 0.00 0.00 0.00 3.36
383 384 1.680651 CTGAGCCTGTCGAGGAGGT 60.681 63.158 11.27 0.00 42.93 3.85
440 441 1.667154 CTTCGGGTCTCTCATGGCGA 61.667 60.000 0.00 0.00 0.00 5.54
600 601 3.006752 ACTCTTGGAGTTGAGAAGCTGAG 59.993 47.826 0.00 0.00 40.28 3.35
623 624 1.376037 GTGAGGGGAAAGTGAGCGG 60.376 63.158 0.00 0.00 0.00 5.52
684 685 2.038837 GGACCGTAAGCTGTTGGGC 61.039 63.158 0.00 0.00 0.00 5.36
687 688 3.799755 CGTAAGCTGTTGGGCCGC 61.800 66.667 0.00 0.00 0.00 6.53
750 751 4.012895 CGGTGTTGTCGTGGCTGC 62.013 66.667 0.00 0.00 0.00 5.25
758 759 1.159713 TGTCGTGGCTGCAACAAGAG 61.160 55.000 8.09 0.00 0.00 2.85
896 898 4.196826 GCGCGCTAGCTTGACACG 62.197 66.667 26.67 7.82 42.32 4.49
955 957 0.681733 TCCATTCCATCGAGCTAGCC 59.318 55.000 12.13 1.79 0.00 3.93
956 958 0.683973 CCATTCCATCGAGCTAGCCT 59.316 55.000 12.13 0.00 0.00 4.58
993 995 0.250234 CGACAATGGCTTGGAGGAGA 59.750 55.000 0.00 0.00 36.64 3.71
1183 1185 3.458189 CGCCTGAACCCTTCTATACTTG 58.542 50.000 0.00 0.00 0.00 3.16
1192 1194 5.767670 ACCCTTCTATACTTGTCTCTAGCA 58.232 41.667 0.00 0.00 0.00 3.49
1193 1195 5.595133 ACCCTTCTATACTTGTCTCTAGCAC 59.405 44.000 0.00 0.00 0.00 4.40
1194 1196 5.278071 CCCTTCTATACTTGTCTCTAGCACG 60.278 48.000 0.00 0.00 0.00 5.34
1195 1197 5.297278 CCTTCTATACTTGTCTCTAGCACGT 59.703 44.000 0.00 0.00 0.00 4.49
1215 1217 2.109181 GTACCAGCCATCGCTCCC 59.891 66.667 0.00 0.00 43.95 4.30
1265 1267 4.090498 CGACGAATATGTATGCTGTGATGG 59.910 45.833 0.00 0.00 0.00 3.51
1268 1270 5.466728 ACGAATATGTATGCTGTGATGGTTC 59.533 40.000 0.00 0.00 0.00 3.62
1358 1360 4.755507 ACGGACGAGGAGGGGGTC 62.756 72.222 0.00 0.00 0.00 4.46
1566 1568 2.762875 GGCCCTACTACGCCACCT 60.763 66.667 0.00 0.00 45.01 4.00
1568 1570 1.143401 GCCCTACTACGCCACCTTC 59.857 63.158 0.00 0.00 0.00 3.46
1569 1571 1.610554 GCCCTACTACGCCACCTTCA 61.611 60.000 0.00 0.00 0.00 3.02
1615 1617 0.459489 AAGAGCTGCTCCTGATCGAC 59.541 55.000 25.09 0.00 0.00 4.20
1622 1632 1.952990 TGCTCCTGATCGACTCATCTC 59.047 52.381 0.00 0.00 32.10 2.75
1623 1633 2.229792 GCTCCTGATCGACTCATCTCT 58.770 52.381 0.00 0.00 32.10 3.10
1624 1634 3.181450 TGCTCCTGATCGACTCATCTCTA 60.181 47.826 0.00 0.00 32.10 2.43
1625 1635 3.436704 GCTCCTGATCGACTCATCTCTAG 59.563 52.174 0.00 0.00 32.10 2.43
1644 1654 1.431488 GCTTCGCGCTGGAATGATCA 61.431 55.000 5.56 0.00 35.14 2.92
1652 1662 2.679059 CGCTGGAATGATCAGTTCTGGT 60.679 50.000 9.95 0.00 34.89 4.00
1786 1796 4.811555 TTGTACTGTCAATGACTGTTGC 57.188 40.909 26.39 19.98 40.79 4.17
1816 1826 5.419542 TGAGCTGGTCTATGTGTTATGTTC 58.580 41.667 8.47 0.00 0.00 3.18
1876 1896 0.329596 AAGTGCATCTCCAACCCTCC 59.670 55.000 0.00 0.00 0.00 4.30
1884 1904 1.460689 TCCAACCCTCCAACCGTCT 60.461 57.895 0.00 0.00 0.00 4.18
1901 1921 0.834261 TCTGGATGACCGGACCAACA 60.834 55.000 9.46 8.59 45.56 3.33
1922 1942 3.787676 CATTGAAGCCGCGCGTCA 61.788 61.111 29.95 22.70 44.27 4.35
1924 1944 4.961511 TTGAAGCCGCGCGTCAGT 62.962 61.111 29.95 8.10 46.12 3.41
1931 1951 1.962092 GCCGCGCGTCAGTATTGAAA 61.962 55.000 29.95 0.00 34.49 2.69
1956 1976 2.561373 CCGGCCAAAAGCTTCGTC 59.439 61.111 2.24 0.00 43.05 4.20
1985 2008 2.571757 CTGTACGCGCCTTCTCCA 59.428 61.111 5.73 0.00 0.00 3.86
1991 2014 1.884926 CGCGCCTTCTCCATCCTTC 60.885 63.158 0.00 0.00 0.00 3.46
1999 2022 4.401925 CCTTCTCCATCCTTCAAACAAGT 58.598 43.478 0.00 0.00 0.00 3.16
2002 2025 1.879380 TCCATCCTTCAAACAAGTGCG 59.121 47.619 0.00 0.00 0.00 5.34
2004 2027 1.068333 CATCCTTCAAACAAGTGCGGG 60.068 52.381 0.00 0.00 0.00 6.13
2009 2032 2.441164 AAACAAGTGCGGGTGCCA 60.441 55.556 0.00 0.00 41.78 4.92
2067 2117 2.343758 GTCTGTCGCTTGGCCTGA 59.656 61.111 3.32 0.00 0.00 3.86
2077 2127 1.618837 GCTTGGCCTGATATCCGTCTA 59.381 52.381 3.32 0.00 0.00 2.59
2088 2138 8.086522 GCCTGATATCCGTCTACTATTTAAACA 58.913 37.037 0.00 0.00 0.00 2.83
2123 2173 4.760047 GCGGCATCACACCTCCGT 62.760 66.667 0.00 0.00 43.45 4.69
2150 2200 3.406764 GTCTTCTCTTTGCACCACATCT 58.593 45.455 0.00 0.00 0.00 2.90
2183 2233 2.143876 GCTCCAAAGCCCTATGGAAA 57.856 50.000 0.00 0.00 44.77 3.13
2192 2242 1.814248 GCCCTATGGAAAAGCCTACCG 60.814 57.143 0.00 0.00 37.63 4.02
2217 2267 1.133637 AGCCGAATCAGGAGCTCTCTA 60.134 52.381 14.64 0.00 0.00 2.43
2275 2325 2.999485 GCTCTCTGGAGTGCAGCGA 61.999 63.158 16.53 5.39 44.66 4.93
2278 2328 4.724602 TCTGGAGTGCAGCGACGC 62.725 66.667 13.03 13.03 0.00 5.19
2309 2360 0.681887 TGGAGAGGCGTCCAACGATA 60.682 55.000 8.97 0.00 46.05 2.92
2312 2363 0.179108 AGAGGCGTCCAACGATAAGC 60.179 55.000 2.06 0.00 46.05 3.09
2313 2364 0.179108 GAGGCGTCCAACGATAAGCT 60.179 55.000 3.28 0.00 46.05 3.74
2341 2392 4.530857 CCCTCGCCGGTCCATGTC 62.531 72.222 1.90 0.00 0.00 3.06
2342 2393 4.873129 CCTCGCCGGTCCATGTCG 62.873 72.222 1.90 0.00 0.00 4.35
2347 2398 2.588877 CCGGTCCATGTCGGCATC 60.589 66.667 0.00 0.00 39.78 3.91
2348 2399 2.186644 CGGTCCATGTCGGCATCA 59.813 61.111 0.00 0.00 31.99 3.07
2349 2400 2.173669 CGGTCCATGTCGGCATCAC 61.174 63.158 0.00 0.00 31.99 3.06
2350 2401 1.819632 GGTCCATGTCGGCATCACC 60.820 63.158 11.06 11.06 31.99 4.02
2351 2402 1.078497 GTCCATGTCGGCATCACCA 60.078 57.895 0.00 0.00 39.03 4.17
2352 2403 0.464373 GTCCATGTCGGCATCACCAT 60.464 55.000 0.00 0.00 39.03 3.55
2353 2404 0.464193 TCCATGTCGGCATCACCATG 60.464 55.000 0.00 0.00 39.03 3.66
2354 2405 1.449726 CCATGTCGGCATCACCATGG 61.450 60.000 11.19 11.19 45.90 3.66
2355 2406 1.152902 ATGTCGGCATCACCATGGG 60.153 57.895 18.09 5.22 39.03 4.00
2356 2407 1.925285 ATGTCGGCATCACCATGGGT 61.925 55.000 18.09 0.00 39.03 4.51
2372 2423 4.065281 GTGAGGCGCGGGTACACT 62.065 66.667 8.83 0.00 0.00 3.55
2373 2424 2.361483 TGAGGCGCGGGTACACTA 60.361 61.111 8.83 0.00 0.00 2.74
2374 2425 2.103736 GAGGCGCGGGTACACTAC 59.896 66.667 8.83 0.00 0.00 2.73
2375 2426 2.677524 AGGCGCGGGTACACTACA 60.678 61.111 8.83 0.00 0.00 2.74
2376 2427 2.012902 GAGGCGCGGGTACACTACAT 62.013 60.000 8.83 0.00 0.00 2.29
2377 2428 1.153509 GGCGCGGGTACACTACATT 60.154 57.895 8.83 0.00 0.00 2.71
2378 2429 1.426041 GGCGCGGGTACACTACATTG 61.426 60.000 8.83 0.00 0.00 2.82
2379 2430 0.458889 GCGCGGGTACACTACATTGA 60.459 55.000 8.83 0.00 0.00 2.57
2380 2431 1.274596 CGCGGGTACACTACATTGAC 58.725 55.000 0.00 0.00 0.00 3.18
2381 2432 1.403116 CGCGGGTACACTACATTGACA 60.403 52.381 0.00 0.00 0.00 3.58
2382 2433 2.737359 CGCGGGTACACTACATTGACAT 60.737 50.000 0.00 0.00 0.00 3.06
2383 2434 2.607635 GCGGGTACACTACATTGACATG 59.392 50.000 0.00 0.00 36.34 3.21
2384 2435 3.194861 CGGGTACACTACATTGACATGG 58.805 50.000 0.00 0.00 34.27 3.66
2385 2436 3.369052 CGGGTACACTACATTGACATGGT 60.369 47.826 0.00 0.00 34.27 3.55
2386 2437 3.938963 GGGTACACTACATTGACATGGTG 59.061 47.826 0.00 0.00 34.27 4.17
2387 2438 3.938963 GGTACACTACATTGACATGGTGG 59.061 47.826 0.00 0.00 34.27 4.61
2388 2439 3.788227 ACACTACATTGACATGGTGGT 57.212 42.857 0.00 0.00 34.27 4.16
2389 2440 4.098914 ACACTACATTGACATGGTGGTT 57.901 40.909 0.00 0.00 34.27 3.67
2390 2441 3.820467 ACACTACATTGACATGGTGGTTG 59.180 43.478 0.00 0.00 34.27 3.77
2391 2442 4.071423 CACTACATTGACATGGTGGTTGA 58.929 43.478 0.00 0.00 34.27 3.18
2392 2443 4.518590 CACTACATTGACATGGTGGTTGAA 59.481 41.667 0.00 0.00 34.27 2.69
2393 2444 4.761739 ACTACATTGACATGGTGGTTGAAG 59.238 41.667 0.00 0.00 34.27 3.02
2394 2445 3.831323 ACATTGACATGGTGGTTGAAGA 58.169 40.909 0.00 0.00 34.27 2.87
2395 2446 3.822735 ACATTGACATGGTGGTTGAAGAG 59.177 43.478 0.00 0.00 34.27 2.85
2396 2447 1.896220 TGACATGGTGGTTGAAGAGC 58.104 50.000 0.00 0.00 0.00 4.09
2397 2448 0.798776 GACATGGTGGTTGAAGAGCG 59.201 55.000 0.00 0.00 0.00 5.03
2398 2449 0.606401 ACATGGTGGTTGAAGAGCGG 60.606 55.000 0.00 0.00 0.00 5.52
2399 2450 1.002134 ATGGTGGTTGAAGAGCGGG 60.002 57.895 0.00 0.00 0.00 6.13
2400 2451 1.488705 ATGGTGGTTGAAGAGCGGGA 61.489 55.000 0.00 0.00 0.00 5.14
2401 2452 1.376037 GGTGGTTGAAGAGCGGGAG 60.376 63.158 0.00 0.00 0.00 4.30
2402 2453 1.376037 GTGGTTGAAGAGCGGGAGG 60.376 63.158 0.00 0.00 0.00 4.30
2403 2454 2.436824 GGTTGAAGAGCGGGAGGC 60.437 66.667 0.00 0.00 44.05 4.70
2429 2480 2.363925 GGTAGGCCGACCAGAGGT 60.364 66.667 28.44 0.00 39.51 3.85
2430 2481 1.076485 GGTAGGCCGACCAGAGGTA 60.076 63.158 28.44 0.00 39.51 3.08
2431 2482 1.390383 GGTAGGCCGACCAGAGGTAC 61.390 65.000 28.44 7.29 39.51 3.34
2432 2483 0.682209 GTAGGCCGACCAGAGGTACA 60.682 60.000 4.34 0.00 35.25 2.90
2433 2484 0.395311 TAGGCCGACCAGAGGTACAG 60.395 60.000 0.00 0.00 35.25 2.74
2434 2485 1.982938 GGCCGACCAGAGGTACAGT 60.983 63.158 0.00 0.00 35.25 3.55
2435 2486 1.511768 GCCGACCAGAGGTACAGTC 59.488 63.158 0.00 0.00 35.25 3.51
2436 2487 0.966370 GCCGACCAGAGGTACAGTCT 60.966 60.000 0.00 0.00 35.25 3.24
2437 2488 1.096416 CCGACCAGAGGTACAGTCTC 58.904 60.000 0.00 0.00 35.25 3.36
2438 2489 1.096416 CGACCAGAGGTACAGTCTCC 58.904 60.000 0.00 0.00 35.25 3.71
2439 2490 1.613520 CGACCAGAGGTACAGTCTCCA 60.614 57.143 0.00 0.00 35.25 3.86
2440 2491 2.526432 GACCAGAGGTACAGTCTCCAA 58.474 52.381 0.00 0.00 35.25 3.53
2441 2492 3.100671 GACCAGAGGTACAGTCTCCAAT 58.899 50.000 0.00 0.00 35.25 3.16
2442 2493 3.515901 GACCAGAGGTACAGTCTCCAATT 59.484 47.826 0.00 0.00 35.25 2.32
2443 2494 3.515901 ACCAGAGGTACAGTCTCCAATTC 59.484 47.826 0.00 0.00 32.11 2.17
2444 2495 3.118592 CCAGAGGTACAGTCTCCAATTCC 60.119 52.174 0.00 0.00 31.96 3.01
2445 2496 3.772025 CAGAGGTACAGTCTCCAATTCCT 59.228 47.826 0.00 0.00 31.96 3.36
2446 2497 4.027437 AGAGGTACAGTCTCCAATTCCTC 58.973 47.826 0.00 0.00 40.04 3.71
2447 2498 2.761208 AGGTACAGTCTCCAATTCCTCG 59.239 50.000 0.00 0.00 0.00 4.63
2448 2499 2.758979 GGTACAGTCTCCAATTCCTCGA 59.241 50.000 0.00 0.00 0.00 4.04
2449 2500 3.429135 GGTACAGTCTCCAATTCCTCGAC 60.429 52.174 0.00 0.00 0.00 4.20
2450 2501 1.202582 ACAGTCTCCAATTCCTCGACG 59.797 52.381 0.00 0.00 0.00 5.12
2451 2502 1.472878 CAGTCTCCAATTCCTCGACGA 59.527 52.381 0.00 0.00 0.00 4.20
2452 2503 1.746220 AGTCTCCAATTCCTCGACGAG 59.254 52.381 18.08 18.08 0.00 4.18
2453 2504 0.456221 TCTCCAATTCCTCGACGAGC 59.544 55.000 19.55 0.00 0.00 5.03
2454 2505 0.173481 CTCCAATTCCTCGACGAGCA 59.827 55.000 19.55 0.66 0.00 4.26
2455 2506 0.108804 TCCAATTCCTCGACGAGCAC 60.109 55.000 19.55 0.00 0.00 4.40
2456 2507 0.108615 CCAATTCCTCGACGAGCACT 60.109 55.000 19.55 0.00 0.00 4.40
2457 2508 0.994995 CAATTCCTCGACGAGCACTG 59.005 55.000 19.55 9.28 0.00 3.66
2458 2509 0.108615 AATTCCTCGACGAGCACTGG 60.109 55.000 19.55 6.54 0.00 4.00
2459 2510 1.251527 ATTCCTCGACGAGCACTGGT 61.252 55.000 19.55 0.00 0.00 4.00
2460 2511 1.461091 TTCCTCGACGAGCACTGGTT 61.461 55.000 19.55 0.00 0.00 3.67
2461 2512 1.006102 CCTCGACGAGCACTGGTTT 60.006 57.895 19.55 0.00 0.00 3.27
2462 2513 1.284982 CCTCGACGAGCACTGGTTTG 61.285 60.000 19.55 0.00 0.00 2.93
2463 2514 0.597637 CTCGACGAGCACTGGTTTGT 60.598 55.000 12.67 0.00 0.00 2.83
2464 2515 0.874175 TCGACGAGCACTGGTTTGTG 60.874 55.000 0.00 0.00 40.62 3.33
2465 2516 1.831389 CGACGAGCACTGGTTTGTGG 61.831 60.000 0.00 0.00 38.31 4.17
2466 2517 0.531974 GACGAGCACTGGTTTGTGGA 60.532 55.000 0.00 0.00 38.31 4.02
2467 2518 0.107410 ACGAGCACTGGTTTGTGGAA 60.107 50.000 0.00 0.00 38.31 3.53
2468 2519 0.307760 CGAGCACTGGTTTGTGGAAC 59.692 55.000 0.00 0.00 38.31 3.62
2482 2533 4.852134 TGTGGAACATCAAATCTGTTGG 57.148 40.909 0.00 0.00 45.67 3.77
2483 2534 4.468713 TGTGGAACATCAAATCTGTTGGA 58.531 39.130 0.00 0.00 45.67 3.53
2484 2535 4.892345 TGTGGAACATCAAATCTGTTGGAA 59.108 37.500 0.00 0.00 45.67 3.53
2485 2536 5.362143 TGTGGAACATCAAATCTGTTGGAAA 59.638 36.000 0.00 0.00 45.67 3.13
2486 2537 6.041865 TGTGGAACATCAAATCTGTTGGAAAT 59.958 34.615 0.00 0.00 45.67 2.17
2487 2538 7.232330 TGTGGAACATCAAATCTGTTGGAAATA 59.768 33.333 0.00 0.00 45.67 1.40
2488 2539 8.253113 GTGGAACATCAAATCTGTTGGAAATAT 58.747 33.333 0.00 0.00 44.52 1.28
2489 2540 8.252417 TGGAACATCAAATCTGTTGGAAATATG 58.748 33.333 0.00 0.00 36.98 1.78
2490 2541 7.223387 GGAACATCAAATCTGTTGGAAATATGC 59.777 37.037 0.00 0.00 36.98 3.14
2491 2542 6.576185 ACATCAAATCTGTTGGAAATATGCC 58.424 36.000 0.00 0.00 0.00 4.40
2492 2543 5.596836 TCAAATCTGTTGGAAATATGCCC 57.403 39.130 0.00 0.00 0.00 5.36
2493 2544 5.271598 TCAAATCTGTTGGAAATATGCCCT 58.728 37.500 0.00 0.00 0.00 5.19
2494 2545 6.430864 TCAAATCTGTTGGAAATATGCCCTA 58.569 36.000 0.00 0.00 0.00 3.53
2495 2546 6.547141 TCAAATCTGTTGGAAATATGCCCTAG 59.453 38.462 0.00 0.00 0.00 3.02
2496 2547 5.912149 ATCTGTTGGAAATATGCCCTAGA 57.088 39.130 0.00 0.00 0.00 2.43
2497 2548 5.296151 TCTGTTGGAAATATGCCCTAGAG 57.704 43.478 0.00 0.00 0.00 2.43
2498 2549 4.103153 TCTGTTGGAAATATGCCCTAGAGG 59.897 45.833 0.00 0.00 39.47 3.69
2553 2604 9.956720 CCTTGTTCATGATAATTGTCTTTATCC 57.043 33.333 0.00 0.00 37.65 2.59
2557 2608 9.403110 GTTCATGATAATTGTCTTTATCCATGC 57.597 33.333 0.00 0.00 37.65 4.06
2558 2609 8.929260 TCATGATAATTGTCTTTATCCATGCT 57.071 30.769 3.72 0.00 37.65 3.79
2568 2619 8.978874 TGTCTTTATCCATGCTATAATTGTGT 57.021 30.769 0.00 0.00 0.00 3.72
2569 2620 9.407380 TGTCTTTATCCATGCTATAATTGTGTT 57.593 29.630 0.00 0.00 0.00 3.32
2574 2625 7.615582 ATCCATGCTATAATTGTGTTATCCG 57.384 36.000 0.00 0.00 0.00 4.18
2575 2626 6.764379 TCCATGCTATAATTGTGTTATCCGA 58.236 36.000 0.00 0.00 0.00 4.55
2576 2627 7.220740 TCCATGCTATAATTGTGTTATCCGAA 58.779 34.615 0.00 0.00 0.00 4.30
2577 2628 7.717436 TCCATGCTATAATTGTGTTATCCGAAA 59.283 33.333 0.00 0.00 0.00 3.46
2578 2629 8.349245 CCATGCTATAATTGTGTTATCCGAAAA 58.651 33.333 0.00 0.00 0.00 2.29
2579 2630 9.897744 CATGCTATAATTGTGTTATCCGAAAAT 57.102 29.630 0.00 0.00 0.00 1.82
2581 2632 8.279800 TGCTATAATTGTGTTATCCGAAAATCG 58.720 33.333 0.00 0.00 40.07 3.34
2582 2633 8.280497 GCTATAATTGTGTTATCCGAAAATCGT 58.720 33.333 0.00 0.00 38.40 3.73
2587 2638 9.925268 AATTGTGTTATCCGAAAATCGTAATAC 57.075 29.630 0.00 2.15 38.40 1.89
2588 2639 8.476657 TTGTGTTATCCGAAAATCGTAATACA 57.523 30.769 7.89 7.89 38.40 2.29
2589 2640 8.651391 TGTGTTATCCGAAAATCGTAATACAT 57.349 30.769 7.89 0.00 38.40 2.29
2590 2641 8.544597 TGTGTTATCCGAAAATCGTAATACATG 58.455 33.333 7.89 0.00 38.40 3.21
2591 2642 8.545420 GTGTTATCCGAAAATCGTAATACATGT 58.455 33.333 2.69 2.69 38.40 3.21
2592 2643 8.544597 TGTTATCCGAAAATCGTAATACATGTG 58.455 33.333 9.11 0.00 38.40 3.21
2593 2644 8.545420 GTTATCCGAAAATCGTAATACATGTGT 58.455 33.333 9.11 0.00 38.40 3.72
2594 2645 6.339194 TCCGAAAATCGTAATACATGTGTG 57.661 37.500 9.11 0.00 38.40 3.82
2595 2646 6.100668 TCCGAAAATCGTAATACATGTGTGA 58.899 36.000 9.11 0.00 38.40 3.58
2596 2647 6.590677 TCCGAAAATCGTAATACATGTGTGAA 59.409 34.615 9.11 0.00 38.40 3.18
2597 2648 7.279090 TCCGAAAATCGTAATACATGTGTGAAT 59.721 33.333 9.11 0.00 38.40 2.57
2598 2649 8.544597 CCGAAAATCGTAATACATGTGTGAATA 58.455 33.333 9.11 0.00 38.40 1.75
2599 2650 9.909043 CGAAAATCGTAATACATGTGTGAATAA 57.091 29.630 9.11 0.00 34.72 1.40
2609 2660 9.679661 AATACATGTGTGAATAATAGACACCAA 57.320 29.630 9.11 0.00 39.43 3.67
2610 2661 7.377766 ACATGTGTGAATAATAGACACCAAC 57.622 36.000 0.00 0.00 39.43 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
226 227 0.873721 GGATCTACGCCTACGACCTC 59.126 60.000 0.00 0.00 43.93 3.85
306 307 3.217743 CCGTCTCCGCCTACCTCC 61.218 72.222 0.00 0.00 0.00 4.30
440 441 1.076632 ATCGGACGAAGCCCTCTCT 60.077 57.895 0.00 0.00 0.00 3.10
600 601 2.772287 CTCACTTTCCCCTCACTGTTC 58.228 52.381 0.00 0.00 0.00 3.18
623 624 0.103937 CACGCATCTCCTCTCCCTTC 59.896 60.000 0.00 0.00 0.00 3.46
738 739 0.746204 TCTTGTTGCAGCCACGACAA 60.746 50.000 8.63 8.63 40.77 3.18
750 751 5.362430 AGAGTAGAATAGCCTCCTCTTGTTG 59.638 44.000 0.00 0.00 0.00 3.33
758 759 1.271102 CGGCAGAGTAGAATAGCCTCC 59.729 57.143 0.00 0.00 43.07 4.30
909 911 3.849951 CCGGTGAGATGGGGTCGG 61.850 72.222 0.00 0.00 0.00 4.79
955 957 3.125316 GTCGACCAAAGACCAATTAGCAG 59.875 47.826 3.51 0.00 32.78 4.24
956 958 3.071479 GTCGACCAAAGACCAATTAGCA 58.929 45.455 3.51 0.00 32.78 3.49
1161 1163 1.413077 AGTATAGAAGGGTTCAGGCGC 59.587 52.381 0.00 0.00 0.00 6.53
1183 1185 2.002586 TGGTACGTACGTGCTAGAGAC 58.997 52.381 30.65 18.99 0.00 3.36
1192 1194 1.430632 CGATGGCTGGTACGTACGT 59.569 57.895 25.98 25.98 0.00 3.57
1193 1195 1.942712 GCGATGGCTGGTACGTACG 60.943 63.158 18.98 15.01 35.83 3.67
1194 1196 4.008035 GCGATGGCTGGTACGTAC 57.992 61.111 17.56 17.56 35.83 3.67
1241 1243 3.638484 TCACAGCATACATATTCGTCGG 58.362 45.455 0.00 0.00 0.00 4.79
1358 1360 1.672356 CGGCACCTCCACCTTGAAG 60.672 63.158 0.00 0.00 34.01 3.02
1431 1433 3.450115 GTCCCCCGACCTGACGAG 61.450 72.222 0.00 0.00 32.40 4.18
1524 1526 3.834799 GTAGGCGACCTCGGTGGG 61.835 72.222 1.46 0.00 41.11 4.61
1644 1654 6.538945 AACATAAACCAAAACACCAGAACT 57.461 33.333 0.00 0.00 0.00 3.01
1652 1662 6.320672 TCCCGTAGAAAACATAAACCAAAACA 59.679 34.615 0.00 0.00 0.00 2.83
1792 1802 5.420725 ACATAACACATAGACCAGCTCAA 57.579 39.130 0.00 0.00 0.00 3.02
1793 1803 5.419542 GAACATAACACATAGACCAGCTCA 58.580 41.667 0.00 0.00 0.00 4.26
1837 1847 8.920174 TGCACTTAGCTAATTTATGACTAGGTA 58.080 33.333 6.64 0.00 45.94 3.08
1838 1848 7.792032 TGCACTTAGCTAATTTATGACTAGGT 58.208 34.615 6.64 0.00 45.94 3.08
1839 1849 8.839310 ATGCACTTAGCTAATTTATGACTAGG 57.161 34.615 6.64 0.00 45.94 3.02
1884 1904 1.373435 GTGTTGGTCCGGTCATCCA 59.627 57.895 0.00 3.78 0.00 3.41
1895 1915 1.659794 GCTTCAATGCCGTGTTGGT 59.340 52.632 0.00 0.00 41.21 3.67
1907 1927 2.829043 ATACTGACGCGCGGCTTCAA 62.829 55.000 37.99 19.79 36.44 2.69
1914 1934 1.592110 CCATTTCAATACTGACGCGCG 60.592 52.381 30.96 30.96 0.00 6.86
1922 1942 1.727467 GGCGCGCCATTTCAATACT 59.273 52.632 43.55 0.00 35.81 2.12
1924 1944 2.712539 CGGCGCGCCATTTCAATA 59.287 55.556 45.26 0.00 35.37 1.90
1985 2008 1.247567 CCCGCACTTGTTTGAAGGAT 58.752 50.000 0.00 0.00 0.00 3.24
1991 2014 2.027460 GGCACCCGCACTTGTTTG 59.973 61.111 0.00 0.00 41.24 2.93
1999 2022 4.966787 GGTTCCTTGGCACCCGCA 62.967 66.667 0.00 0.00 41.24 5.69
2002 2025 1.001269 GGTAGGTTCCTTGGCACCC 60.001 63.158 4.89 0.00 32.92 4.61
2004 2027 1.376812 CGGGTAGGTTCCTTGGCAC 60.377 63.158 0.00 0.00 0.00 5.01
2009 2032 2.653087 GGCGTCGGGTAGGTTCCTT 61.653 63.158 0.00 0.00 0.00 3.36
2052 2076 1.506493 GATATCAGGCCAAGCGACAG 58.494 55.000 5.01 0.00 0.00 3.51
2067 2117 7.822822 GGCCATGTTTAAATAGTAGACGGATAT 59.177 37.037 0.00 0.00 0.00 1.63
2123 2173 0.762418 TGCAAAGAGAAGACCGGGAA 59.238 50.000 6.32 0.00 0.00 3.97
2133 2183 1.527034 GCAGATGTGGTGCAAAGAGA 58.473 50.000 0.00 0.00 40.86 3.10
2138 2188 1.252215 CCATGGCAGATGTGGTGCAA 61.252 55.000 0.00 0.00 43.12 4.08
2150 2200 4.166888 GAGCTCGAGGCCATGGCA 62.167 66.667 36.56 16.58 44.11 4.92
2181 2231 1.079336 GCTCGTCCGGTAGGCTTTT 60.079 57.895 0.00 0.00 37.47 2.27
2183 2233 3.459063 GGCTCGTCCGGTAGGCTT 61.459 66.667 16.50 0.00 37.47 4.35
2192 2242 1.066587 CTCCTGATTCGGCTCGTCC 59.933 63.158 0.00 0.00 0.00 4.79
2217 2267 2.547640 ATCCAGTCGGCTGCAATGCT 62.548 55.000 12.68 0.00 41.26 3.79
2275 2325 0.532862 CTCCATTGGCTTATCCGCGT 60.533 55.000 4.92 0.00 37.80 6.01
2278 2328 1.879796 GCCTCTCCATTGGCTTATCCG 60.880 57.143 0.00 0.00 45.26 4.18
2282 2332 0.178068 GACGCCTCTCCATTGGCTTA 59.822 55.000 0.00 0.00 46.42 3.09
2355 2406 2.703798 TAGTGTACCCGCGCCTCAC 61.704 63.158 0.00 7.20 0.00 3.51
2356 2407 2.361483 TAGTGTACCCGCGCCTCA 60.361 61.111 0.00 0.00 0.00 3.86
2357 2408 2.012902 ATGTAGTGTACCCGCGCCTC 62.013 60.000 0.00 0.00 0.00 4.70
2358 2409 1.610554 AATGTAGTGTACCCGCGCCT 61.611 55.000 0.00 0.00 0.00 5.52
2359 2410 1.153509 AATGTAGTGTACCCGCGCC 60.154 57.895 0.00 0.00 0.00 6.53
2360 2411 0.458889 TCAATGTAGTGTACCCGCGC 60.459 55.000 0.00 0.00 0.00 6.86
2361 2412 1.274596 GTCAATGTAGTGTACCCGCG 58.725 55.000 0.00 0.00 0.00 6.46
2362 2413 2.373540 TGTCAATGTAGTGTACCCGC 57.626 50.000 0.00 0.00 0.00 6.13
2363 2414 3.194861 CCATGTCAATGTAGTGTACCCG 58.805 50.000 0.00 0.00 31.27 5.28
2364 2415 3.938963 CACCATGTCAATGTAGTGTACCC 59.061 47.826 0.00 0.00 31.27 3.69
2365 2416 3.938963 CCACCATGTCAATGTAGTGTACC 59.061 47.826 0.00 0.00 31.27 3.34
2366 2417 4.575885 ACCACCATGTCAATGTAGTGTAC 58.424 43.478 0.00 0.00 31.27 2.90
2367 2418 4.901197 ACCACCATGTCAATGTAGTGTA 57.099 40.909 0.00 0.00 31.27 2.90
2368 2419 3.788227 ACCACCATGTCAATGTAGTGT 57.212 42.857 0.00 0.00 31.27 3.55
2369 2420 4.071423 TCAACCACCATGTCAATGTAGTG 58.929 43.478 0.00 0.00 31.27 2.74
2370 2421 4.365514 TCAACCACCATGTCAATGTAGT 57.634 40.909 0.00 0.00 31.27 2.73
2371 2422 5.003160 TCTTCAACCACCATGTCAATGTAG 58.997 41.667 0.00 0.00 31.27 2.74
2372 2423 4.979335 TCTTCAACCACCATGTCAATGTA 58.021 39.130 0.00 0.00 31.27 2.29
2373 2424 3.822735 CTCTTCAACCACCATGTCAATGT 59.177 43.478 0.00 0.00 31.27 2.71
2374 2425 3.366679 GCTCTTCAACCACCATGTCAATG 60.367 47.826 0.00 0.00 0.00 2.82
2375 2426 2.821969 GCTCTTCAACCACCATGTCAAT 59.178 45.455 0.00 0.00 0.00 2.57
2376 2427 2.229792 GCTCTTCAACCACCATGTCAA 58.770 47.619 0.00 0.00 0.00 3.18
2377 2428 1.877680 CGCTCTTCAACCACCATGTCA 60.878 52.381 0.00 0.00 0.00 3.58
2378 2429 0.798776 CGCTCTTCAACCACCATGTC 59.201 55.000 0.00 0.00 0.00 3.06
2379 2430 0.606401 CCGCTCTTCAACCACCATGT 60.606 55.000 0.00 0.00 0.00 3.21
2380 2431 1.308069 CCCGCTCTTCAACCACCATG 61.308 60.000 0.00 0.00 0.00 3.66
2381 2432 1.002134 CCCGCTCTTCAACCACCAT 60.002 57.895 0.00 0.00 0.00 3.55
2382 2433 2.111999 CTCCCGCTCTTCAACCACCA 62.112 60.000 0.00 0.00 0.00 4.17
2383 2434 1.376037 CTCCCGCTCTTCAACCACC 60.376 63.158 0.00 0.00 0.00 4.61
2384 2435 1.376037 CCTCCCGCTCTTCAACCAC 60.376 63.158 0.00 0.00 0.00 4.16
2385 2436 3.068881 CCTCCCGCTCTTCAACCA 58.931 61.111 0.00 0.00 0.00 3.67
2386 2437 2.436824 GCCTCCCGCTCTTCAACC 60.437 66.667 0.00 0.00 0.00 3.77
2387 2438 2.815647 CGCCTCCCGCTCTTCAAC 60.816 66.667 0.00 0.00 34.21 3.18
2388 2439 4.082523 CCGCCTCCCGCTCTTCAA 62.083 66.667 0.00 0.00 35.03 2.69
2390 2441 4.821589 CACCGCCTCCCGCTCTTC 62.822 72.222 0.00 0.00 35.03 2.87
2398 2449 3.366739 CTACCGGAACACCGCCTCC 62.367 68.421 9.46 0.00 44.70 4.30
2399 2450 2.183555 CTACCGGAACACCGCCTC 59.816 66.667 9.46 0.00 44.70 4.70
2400 2451 3.387947 CCTACCGGAACACCGCCT 61.388 66.667 9.46 0.00 44.70 5.52
2412 2463 1.076485 TACCTCTGGTCGGCCTACC 60.076 63.158 19.55 19.55 37.09 3.18
2413 2464 0.682209 TGTACCTCTGGTCGGCCTAC 60.682 60.000 7.97 0.00 37.09 3.18
2414 2465 0.395311 CTGTACCTCTGGTCGGCCTA 60.395 60.000 7.97 0.00 37.09 3.93
2415 2466 1.682684 CTGTACCTCTGGTCGGCCT 60.683 63.158 7.97 0.00 37.09 5.19
2416 2467 1.946475 GACTGTACCTCTGGTCGGCC 61.946 65.000 0.00 0.00 37.09 6.13
2417 2468 0.966370 AGACTGTACCTCTGGTCGGC 60.966 60.000 0.00 0.00 37.09 5.54
2418 2469 1.096416 GAGACTGTACCTCTGGTCGG 58.904 60.000 0.00 0.00 37.09 4.79
2419 2470 1.096416 GGAGACTGTACCTCTGGTCG 58.904 60.000 0.00 0.00 37.09 4.79
2420 2471 2.217510 TGGAGACTGTACCTCTGGTC 57.782 55.000 0.00 0.00 37.09 4.02
2421 2472 2.696526 TTGGAGACTGTACCTCTGGT 57.303 50.000 0.00 0.00 40.16 4.00
2422 2473 3.118592 GGAATTGGAGACTGTACCTCTGG 60.119 52.174 0.00 0.00 0.00 3.86
2423 2474 3.772025 AGGAATTGGAGACTGTACCTCTG 59.228 47.826 0.00 0.00 0.00 3.35
2424 2475 4.027437 GAGGAATTGGAGACTGTACCTCT 58.973 47.826 0.00 0.00 39.36 3.69
2425 2476 3.181485 CGAGGAATTGGAGACTGTACCTC 60.181 52.174 0.00 0.00 39.16 3.85
2426 2477 2.761208 CGAGGAATTGGAGACTGTACCT 59.239 50.000 0.00 0.00 0.00 3.08
2427 2478 2.758979 TCGAGGAATTGGAGACTGTACC 59.241 50.000 0.00 0.00 0.00 3.34
2428 2479 3.731264 CGTCGAGGAATTGGAGACTGTAC 60.731 52.174 0.00 0.00 0.00 2.90
2429 2480 2.422479 CGTCGAGGAATTGGAGACTGTA 59.578 50.000 0.00 0.00 0.00 2.74
2430 2481 1.202582 CGTCGAGGAATTGGAGACTGT 59.797 52.381 0.00 0.00 0.00 3.55
2431 2482 1.472878 TCGTCGAGGAATTGGAGACTG 59.527 52.381 5.12 0.00 0.00 3.51
2432 2483 1.746220 CTCGTCGAGGAATTGGAGACT 59.254 52.381 14.68 0.00 0.00 3.24
2433 2484 1.799548 GCTCGTCGAGGAATTGGAGAC 60.800 57.143 23.09 0.00 0.00 3.36
2434 2485 0.456221 GCTCGTCGAGGAATTGGAGA 59.544 55.000 23.09 0.00 0.00 3.71
2435 2486 0.173481 TGCTCGTCGAGGAATTGGAG 59.827 55.000 23.09 0.00 0.00 3.86
2436 2487 0.108804 GTGCTCGTCGAGGAATTGGA 60.109 55.000 23.09 0.00 30.58 3.53
2437 2488 0.108615 AGTGCTCGTCGAGGAATTGG 60.109 55.000 23.09 0.00 30.58 3.16
2438 2489 0.994995 CAGTGCTCGTCGAGGAATTG 59.005 55.000 23.09 17.29 30.58 2.32
2439 2490 0.108615 CCAGTGCTCGTCGAGGAATT 60.109 55.000 23.09 9.95 30.58 2.17
2440 2491 1.251527 ACCAGTGCTCGTCGAGGAAT 61.252 55.000 23.09 17.43 30.58 3.01
2441 2492 1.461091 AACCAGTGCTCGTCGAGGAA 61.461 55.000 23.09 0.00 30.58 3.36
2442 2493 1.461091 AAACCAGTGCTCGTCGAGGA 61.461 55.000 23.09 18.41 0.00 3.71
2443 2494 1.006102 AAACCAGTGCTCGTCGAGG 60.006 57.895 23.09 9.96 0.00 4.63
2444 2495 0.597637 ACAAACCAGTGCTCGTCGAG 60.598 55.000 18.08 18.08 0.00 4.04
2445 2496 0.874175 CACAAACCAGTGCTCGTCGA 60.874 55.000 0.00 0.00 32.04 4.20
2446 2497 1.564622 CACAAACCAGTGCTCGTCG 59.435 57.895 0.00 0.00 32.04 5.12
2447 2498 0.531974 TCCACAAACCAGTGCTCGTC 60.532 55.000 0.00 0.00 38.18 4.20
2448 2499 0.107410 TTCCACAAACCAGTGCTCGT 60.107 50.000 0.00 0.00 38.18 4.18
2449 2500 0.307760 GTTCCACAAACCAGTGCTCG 59.692 55.000 0.00 0.00 38.18 5.03
2450 2501 1.388547 TGTTCCACAAACCAGTGCTC 58.611 50.000 0.00 0.00 38.18 4.26
2451 2502 1.956477 GATGTTCCACAAACCAGTGCT 59.044 47.619 0.00 0.00 38.18 4.40
2452 2503 1.680735 TGATGTTCCACAAACCAGTGC 59.319 47.619 0.00 0.00 38.18 4.40
2453 2504 4.383850 TTTGATGTTCCACAAACCAGTG 57.616 40.909 0.00 0.00 37.03 3.66
2454 2505 4.895297 AGATTTGATGTTCCACAAACCAGT 59.105 37.500 0.00 0.00 38.50 4.00
2455 2506 5.221303 ACAGATTTGATGTTCCACAAACCAG 60.221 40.000 0.00 0.00 38.50 4.00
2456 2507 4.648762 ACAGATTTGATGTTCCACAAACCA 59.351 37.500 0.00 0.00 38.50 3.67
2457 2508 5.200368 ACAGATTTGATGTTCCACAAACC 57.800 39.130 0.00 0.00 38.50 3.27
2458 2509 5.463061 CCAACAGATTTGATGTTCCACAAAC 59.537 40.000 0.00 0.00 38.80 2.93
2459 2510 5.362143 TCCAACAGATTTGATGTTCCACAAA 59.638 36.000 0.00 0.00 38.80 2.83
2460 2511 4.892345 TCCAACAGATTTGATGTTCCACAA 59.108 37.500 0.00 0.00 38.80 3.33
2461 2512 4.468713 TCCAACAGATTTGATGTTCCACA 58.531 39.130 0.00 0.00 38.80 4.17
2462 2513 5.452078 TTCCAACAGATTTGATGTTCCAC 57.548 39.130 0.00 0.00 38.80 4.02
2463 2514 6.669125 ATTTCCAACAGATTTGATGTTCCA 57.331 33.333 0.00 0.00 38.80 3.53
2464 2515 7.223387 GCATATTTCCAACAGATTTGATGTTCC 59.777 37.037 0.00 0.00 38.80 3.62
2465 2516 7.223387 GGCATATTTCCAACAGATTTGATGTTC 59.777 37.037 0.00 0.00 38.80 3.18
2466 2517 7.043565 GGCATATTTCCAACAGATTTGATGTT 58.956 34.615 0.00 0.00 41.47 2.71
2467 2518 6.407299 GGGCATATTTCCAACAGATTTGATGT 60.407 38.462 0.00 0.00 0.00 3.06
2468 2519 5.987347 GGGCATATTTCCAACAGATTTGATG 59.013 40.000 0.00 0.00 0.00 3.07
2469 2520 5.901276 AGGGCATATTTCCAACAGATTTGAT 59.099 36.000 0.00 0.00 0.00 2.57
2470 2521 5.271598 AGGGCATATTTCCAACAGATTTGA 58.728 37.500 0.00 0.00 0.00 2.69
2471 2522 5.603170 AGGGCATATTTCCAACAGATTTG 57.397 39.130 0.00 0.00 0.00 2.32
2472 2523 6.672593 TCTAGGGCATATTTCCAACAGATTT 58.327 36.000 0.00 0.00 0.00 2.17
2473 2524 6.266131 TCTAGGGCATATTTCCAACAGATT 57.734 37.500 0.00 0.00 0.00 2.40
2474 2525 5.222007 CCTCTAGGGCATATTTCCAACAGAT 60.222 44.000 0.00 0.00 0.00 2.90
2475 2526 4.103153 CCTCTAGGGCATATTTCCAACAGA 59.897 45.833 0.00 0.00 0.00 3.41
2476 2527 4.392940 CCTCTAGGGCATATTTCCAACAG 58.607 47.826 0.00 0.00 0.00 3.16
2477 2528 4.437682 CCTCTAGGGCATATTTCCAACA 57.562 45.455 0.00 0.00 0.00 3.33
2527 2578 9.956720 GGATAAAGACAATTATCATGAACAAGG 57.043 33.333 0.00 0.00 41.84 3.61
2531 2582 9.403110 GCATGGATAAAGACAATTATCATGAAC 57.597 33.333 0.00 0.00 41.84 3.18
2532 2583 9.358406 AGCATGGATAAAGACAATTATCATGAA 57.642 29.630 0.00 0.00 41.84 2.57
2533 2584 8.929260 AGCATGGATAAAGACAATTATCATGA 57.071 30.769 0.00 0.00 41.84 3.07
2542 2593 9.407380 ACACAATTATAGCATGGATAAAGACAA 57.593 29.630 0.00 0.00 0.00 3.18
2543 2594 8.978874 ACACAATTATAGCATGGATAAAGACA 57.021 30.769 0.00 0.00 0.00 3.41
2548 2599 9.161629 CGGATAACACAATTATAGCATGGATAA 57.838 33.333 0.00 0.00 0.00 1.75
2549 2600 8.536175 TCGGATAACACAATTATAGCATGGATA 58.464 33.333 0.00 0.00 0.00 2.59
2550 2601 7.394016 TCGGATAACACAATTATAGCATGGAT 58.606 34.615 0.00 0.00 0.00 3.41
2551 2602 6.764379 TCGGATAACACAATTATAGCATGGA 58.236 36.000 0.00 0.00 0.00 3.41
2552 2603 7.433708 TTCGGATAACACAATTATAGCATGG 57.566 36.000 0.00 0.00 0.00 3.66
2553 2604 9.897744 ATTTTCGGATAACACAATTATAGCATG 57.102 29.630 0.00 0.00 0.00 4.06
2555 2606 8.279800 CGATTTTCGGATAACACAATTATAGCA 58.720 33.333 0.00 0.00 36.00 3.49
2556 2607 8.280497 ACGATTTTCGGATAACACAATTATAGC 58.720 33.333 1.69 0.00 45.59 2.97
2561 2612 9.925268 GTATTACGATTTTCGGATAACACAATT 57.075 29.630 1.69 0.00 45.59 2.32
2562 2613 9.100554 TGTATTACGATTTTCGGATAACACAAT 57.899 29.630 1.69 0.00 45.59 2.71
2563 2614 8.476657 TGTATTACGATTTTCGGATAACACAA 57.523 30.769 1.69 0.00 45.59 3.33
2564 2615 8.544597 CATGTATTACGATTTTCGGATAACACA 58.455 33.333 1.69 0.00 45.59 3.72
2565 2616 8.545420 ACATGTATTACGATTTTCGGATAACAC 58.455 33.333 0.00 0.00 45.59 3.32
2566 2617 8.544597 CACATGTATTACGATTTTCGGATAACA 58.455 33.333 0.00 1.41 45.59 2.41
2567 2618 8.545420 ACACATGTATTACGATTTTCGGATAAC 58.455 33.333 0.00 0.00 45.59 1.89
2568 2619 8.544597 CACACATGTATTACGATTTTCGGATAA 58.455 33.333 0.00 0.00 45.59 1.75
2569 2620 7.921745 TCACACATGTATTACGATTTTCGGATA 59.078 33.333 0.00 0.00 45.59 2.59
2570 2621 6.759356 TCACACATGTATTACGATTTTCGGAT 59.241 34.615 0.00 0.00 45.59 4.18
2571 2622 6.100668 TCACACATGTATTACGATTTTCGGA 58.899 36.000 0.00 0.00 45.59 4.55
2572 2623 6.339194 TCACACATGTATTACGATTTTCGG 57.661 37.500 0.00 0.00 45.59 4.30
2573 2624 9.909043 TTATTCACACATGTATTACGATTTTCG 57.091 29.630 0.00 0.00 46.93 3.46
2583 2634 9.679661 TTGGTGTCTATTATTCACACATGTATT 57.320 29.630 0.00 0.00 41.93 1.89
2584 2635 9.109393 GTTGGTGTCTATTATTCACACATGTAT 57.891 33.333 0.00 0.00 41.93 2.29
2585 2636 8.487313 GTTGGTGTCTATTATTCACACATGTA 57.513 34.615 0.00 0.00 41.93 2.29
2586 2637 7.377766 GTTGGTGTCTATTATTCACACATGT 57.622 36.000 0.00 0.00 41.93 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.