>input_sequence_74202
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-----------------------------------------ATGCTGGCCGCGCTCGTGCTGGTGGCCGCGGCGACGTGC
GCCGACGCCGGGGAGAGCTACGGCGCGTCCATGTTCACGGTGACGGGCACCGTGCTGTGCCAGGACTGCACCAAGAACTG
GAACGCCTACGCCTACAACGCCAAGCCCATCGCCGGTACGGTGCGCCTGAACCCTTCTATACTTGTCTCTAGCACGTACG
TACCAGCCATCGCTCCCCGCCGGCGACCGGACGACGACATGACCGACGAATATGTATGCTGTGATGGTTCGCAGGCAGCG
TGGTGGCGGTGACGTGCCTGGACGAGCACACGGGGCGGACGGTGATCCACCGCACGGACACGACGGACGAGGAGGGGGTC
TTCAAGGTGGAGGTGCCGTACGCCCACGACGGCGGCAGCTGCCGCCTCGACCCGGCCCACTGCCTCGTCCGCCTCGTCAG
GTCGGGGGACAAGGGCTGCGCCGTGCTCACCAACTTCAACGGCGGCACGACCGGCGAGAAGCCGTACCGCCCCTCGCGGG
TCAGCCCCACCGAGGTCGCCTACTCGGCAGGGCCCTACTACGCCACCTTCACGCAGTGCGACGTCGACGGCGACGACAAG
AGCTGCTCCTGA--------------------------------------------------------------------
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>chr1A_1_TraesCS1A01G206500
CGTCGGCCAGCAGCCCGCGCGCGTGCGCCAGCGACGGGAGCCCCGTGGGCGTGGAGAAGTTGCAGCAGACGTAGACGGGC
ACGAGGAAGAGGTCGGCCTCCTCGGGGCGCAGGCCCGCGCGCCGCTGCCGCAGCAGCAGCGCCTCGTGCACGGCCACCTC
GGCGGCGAAGAGGTGGCGCGCGCACCGCGCGTCGGCGGCCGCCCAGCCCCGGTTGAAGCGCGGCGGGAGGTCGTAGGCGT
AGATCCGGACGCCGGGGAGGGGCTCGGAGCCGGGGCCGCGGAGGGAGGGGGGCAGCGCCGGGAGGAGGAGGTAGGCGGAG
ACGGCCAGCCAGAGGAGCCACCGCCACCTGTAGAAGTGGCGCTTCCTGAGCCTGTCGAGGAGGTGGCAGTGGCGCGGCTT
GTGGGCTCTTGCTGTCTTGAGCTTCGGGTCTCTCATGGCGAGAGAGGGCTTCGTCCGATCGAGCATCAGAGCCAAGTGTT
AGGCTGCGGACAGTAGCTCCAGTTCGGATTCTTCTCCATTCCCGCCTCGATTTCCCGGCTCGGCGGCGCTCGCGACGGCC
ATTGCTGGCGGAGCTTTGACTCTTGGAGTTGAGAAGCTGAGAACAGTGAGGGGAAAGTGAGCGGAAGGGAGAGGAGATGC
GTGTGATGACCACCCACTGGCATGTGGGACCGTAAGCTGTTGGGCCGCCTGGCCCACGTGTCGGCGTCACATCAGCGCGT
GCGGCGTCCACGTCGGTGTTGTCGTGGCTGCAACAAGAGGAGGCTATTCTACTCTGCCGTACCGACACCGGAAA-TGGCG
CGCACGTCGTCGTCAGCCTATGGCGAGTTGGGCTCACGTCGACCACCATGGCCGGGAGGCCACTCCACGATAAAGCCGCC
GCGCGCTAGCTTGACACGCAGCTCGCTCGACCGACCCCATCTCACCGGCCCGTCCATTCCATTCCATCGAGCTAGCCTGC
TAATTGGTCTTTGGTCGACAATGGCTTGGAGGAGAGCGTCGATGCTGGCCGCGCTCGTGCTGGTGGCCGCGGCGACGTGC
GCCGACGCCGGGGAGAGCTACGGCGCGTCCATGTTCACGGTGACGGGCACCGTGCTGTGCCAGGACTGCACCAAGAACTG
GAACGCCTACGCCTACAACGCCAAGCCCATCGCCGGTACGGTGCGCCTGAACCCTTCTATACTTGTCTCTAGCACGTACG
TACCAGCCATCGCTCCCCGCCGGCGACCGGACGACGACATGACCGACGAATATGTATGCTGTGATGGTTCGCAGGCAGCG
TGGTGGCGGTGACGTGCCTGGACGAGCACACGGGGCGGACGGTGATCCACCGCACGGACACGACGGACGAGGAGGGGGTC
TTCAAGGTGGAGGTGCCGTACGCCCACGACGGCGGCAGCTGCCGCCTCGACCCGGCCCACTGCCTCGTCCGCCTCGTCAG
GTCGGGGGACAAGGGCTGCGCCGTGCTCACCAACTTCAACGGCGGCACGACCGGCGAGAAGCCGTACCGCCCCTCGCGGG
TCAGCCCCACCGAGGTCGCCTACTCGGCAGGGCCCTACTACGCCACCTTCACGCAGTGCGACGTCGACGGCGACGACAAG
AGCTGCTCCTGATCGACTCA--------TCTCTAGCTTCGCGCTGGAATGATCAGTTCTGGTGTTTTGGTTTATGTTTTC
TACGGGATCTGGATGGTTCGACGCTAGCATACATGTGCGTCTTTGTTTTGCTTCTAAAATGTCCGTGCGTGCGATTTTTG
TAACATGATCTGATTTGTACTGTCAATGACTGTTGCTTTTTTTGAGCTGGTCTATGTGTTATGTTCCACAACATCTGTTA
TACTTATACCTAGTCATAAAT----------TAGCTAAGTGCATCTCCAACCCTCCAACCGTCTGGATGACCGGACCAAC
ACGGCATTGAAGCCGCGCGTCAGTATTGAAATGGCGCGCCGGCCAAAAGCTTCGTCGGCGCCGTGCCC---TGTACGCGC
CTTCTCCATCCTTCAAACAAGTGCGGGTGCCAAGGAACCTA-CCCGACGCCCACATGCGAACGCCACCCGTTCGTCTGTC
--------------------------GCTTGGCCTGATATCCGTCTACTATTTAAACATGGCCAGGCCGGCAACAGCGGC
ATCACACCTCCGTTCCCGGTCTTCTCTTTGCACCACATCTGCCATGGCCTCGAGCTCCAAAGCCCTATGGAAAAGCCTAC
CGGACGAGCCGAATCAGGAGCTCTCTAGCATTGCAGCCGACTGGATACAAGTTGGCTTGTCGACGAGCTCTCTGGAGTGC
AGCGACGCGGATAAGCCAATGGA-GAGGCGTCCAACGATAAGCTGGCGCCACCGCCCTCGCCGGTCCATGTCGGCATCAC
CATGGGTGAGGCGCGGGTACACTACATTGACATGGTGGTTGAAGAGCGGGAGGCGGTGTTCCGGTAGGCCGACCAGAGGT
ACAGTCTCCAATTCCTCGACGAGCACTGGTTTGTGGAACATCAAATCTGTTGGAAATATGCCCTAGAGGCAATAATAAAA
ACTTTATTATTATATTTCCTTGTTCATGATAATTGTCTTTATCCATGCTATAATTGTGTTATCCGAAAATCGTAATACAT
GTGTGAATAATAGACACCAAC
>chr1D_1
CGTCGGCGAGCAGCGCGCGCGCGCGCGCCAGCGACGGGAGCCCCGTGAGCGTGGAGAAGTTGCAGCAGACGTAGACGGGC
ACGAGGAAGAGGTCGGCCTCCTCGGGGCGCAGGCCCGCGCGCCGCTGCCGCAGCAGCAGCGCCTCGTGCACGGCCACCTC
GGCGGCGAAGAGGTGGCGCGCGCACCGCGCGTCGGCGGCCGCCCAGCCCCGGTTGAAGCGCGGCGGCAGGTCGTAGGCGT
AGATCCGGACGCCGGGGCGGGGCTCGGAGCTGGGGCCGCGGAGGGAGGGGGGCAGCGCTGGGAGGAAGAGGTAGGCGGAG
AGGGCTAGCCAGAGGAGCCACCGCCACCTGTAGAAGTGGCGCTTCCTGAGCCTGTCGAGGAGGGGGAAGTGGCGCGGCTT
GTGGGCTCTTGCTGTCTTCACCTTCGGGTCTCTCATGGCGGGAGAGGGCTTCGTCCGATCGAGCATCGGAGCCAAGTGTT
AGGCTGCGGACAGTAGCTCCAGTTCGGATTCTTCTCCATTGCCCCCTCGGATTTTCGGCTCGGCGGCGCTCGCGACGGCC
ATTGCTGGCGGAGCTTTGACTCTTGGAGTTGAGAAGCTGACAACAGTGAGGGGAAAGTGAGCGAAAGGGAGAGGAGATGC
GTGTGATGACCAGCCACTGGCATGTGGGACCGTGAGCTGTTGGGTCGTCTGGCCCACGTGTCGGCGTCACATCAGCGCGT
GCGGCGTCCACGTCGGTGCTGTCGTGGCTGAAACAAGATGAGGTTATTCTACTCTGCCGTACCGACACCGGAAAATGGCG
CGCACGTCGTCGTCAGCCTATAGCGAGTTGGGCTCACGTCGACCGCCATGGCCAGGAGGCCACTCCACGATAAAGCCGCC
GCGCGCTAGGTTGACACACAGCTCGCTCGATCGACCCCATCTCACCGGCCCATCCATTGCATTCCATCGAGCTAGCTCGC
TAATTGGTCTTTCGTCGACGATGGCGTGGAGGAGGGCGTCGGTGCTGGCCGCGCTCGTGCTGGTGGCCGCGGCGGCGTGC
GCCGACGCCGGGGAGAGCTACGGCGCGTCCATGTTCACGGTGACGGGCACCGTGCTGTGCCAGGACTGCACCAAGAACTG
GAACGCCTACGCCTACAGCGCCAAGCCCATCGCCGGTACGGTTCGCCTGAACCCTTCTATACTTATCTCTACC----ACG
TACCAGCCATCGCTCCTCGCCGGCGACCGGACGACGGCATGATCGACGAATATGTATGCTGTGATGATTTGCAGGCAGCG
TGGTGGCGGTGACGTGCCTGGACGAGCACAGGGGGCGGACGGTGACCCACAGCGTGGACACGACGGACGAGGAGGGGGTT
TTCAAGGTGGAGGTGCCGTACGCCCACGACGGCGGCAGCTGCCGCCTCGACCCGGCCCACTGCCTCGTCCGCATCGTCAG
GTCGGGGGACAAGGGCTGCGCCGTGCTCACCAACTTCAACGGCGGCACGACCGGCGAGAAGCTATTGCGCCCCTCGAAGG
TCTCCTCCACCGAGGTCGGCTACTCGGCAGGGCCCTACTACGCCACCGTGCCGCAGTGCGACGTCGACGGCGACGACAAG
AGCTGCTCCTGATCGAGTGACCTCTCGGTCT----CTGCGCGCTGGAACGATCGGTTCTGTCGTTTTGGTTTATGTTTTC
TACGGGATCTGGATGGTTCGACGCTAGCATACATGTGCGTCCTTGTTTTGCTTCTAAAATGTCCGTGCGTGCGATTTTTG
TAACATGATCTGATTTGTACTGTCAATGACTGTTGTTTTTT--GAGCTGGTCTGTGTGTTATGTTTCACAACATCTGTTA
TACCTAG---TAGTCATAAAT----------TAGCTAAGTGCGTCCCCAACCCTCAAACTGTTCGGATGACCGGGCCAAC
GCGGCAGTGAAGCTGCGCGTCGGCATTGAAGTGGCGCGCCGGCCAAAAGCGCCGTTGGCGCCATGCCCAGGTGTACGCGC
CTTCTCCGTCCTTTAAACAAGCGCAGTTGCCGAGGAACCTACCCCGACGCCCACATGCGAACGCCACCCGTTCGTTTGTC
TGCTAGCAGACATTAAACACCCTGCCGCTTGGCCTGGTATCCGTCTGCTATTTAAACGTGGCCAGGCCGGCAACATCGGC
ATCACACCTCCGCTCCCGGTCTCCTCTCTGCACCACATCCGCCATGGCCTCGAGCTCCAAAGCCCTATGGGAGAGCCTAC
CAGACGAGCCGAATCAGGAGCTCTCTGGCATTGCAGCCGACTGGATACAAGTTGGCTTGTCGACGAGCTCTCCGGAGTGC
AGCGGCGTGGACAAGCCAATGGAAGAGGCGTCCAACGATGAGTAGGCGCCACCGCCCTCGCCGGTCCATG----------
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>chr1B_1
CGTCGGCGAGCAGCCCACGCGCGTGCGCCAGCGACGGGAGGCCCGTGGGCGTGGAGAAGTTGCAGCAGACGTAGACGGGC
ACGAAGAAGAGGTCGGCCTCCTCGAGGCGCAGGCCCGCGCGCCGCTGCCGCAGCAGCAGCGCCTCGTGCACGGCCACCTC
GGCGGCGAAGAGGTGGCGCGCGCACCGCGCGTCGGCGGCCGCCCAGGCCTGGTTGAAGCGCGGCGGCAGGTTGTAGGCGT
AGATCCGGACGCCGGGGCGGAGCTCGGAGCTGGGGCCGCGGAGGGACGGCGGGAGCGCCGGGAGGAAGAGGTAGGCGGAG
AGGGCCAGCCAGAGGAGCCACCGCCACCTGTAGAAGTAGCGCTTCCTGAGCCTGTCGAGGAGGCGGCACTGGCGCGGCTT
GTGGGCTCTTGCTGTCTTGAGCTTCGGGTCTCTCATGGCGGGAGAGGGCTTCGCTCGGTCGAGCATCAGAGCTAAGTGTT
AGGCTGCGGACAGTAGCTCCAGTTCGGATTCTTCTCCATTCCCGCCTCGATTTCCCGGCTCGGCGGCGCTAGCCACGGCC
ATTGCTGGCGGAGCTTTGACTCTTGGAATTGAGAAGCTGACAACAGTGAGGGGAAAGTGAGCGAAAGGGAGAGGAGATGC
GTGTGATGATCACCCACTGGCGTGTGGGACCGTAAGCTGTTGGGTCGTCCTGCCCACGTGTCGGCGTCACATCAGCGCGT
GCGGCGTCCACGTCGGTGCTGTCGTGGCTGAAACAAGA---GGCTATTCTACTCTGCCGTACCGACACCCGGAAATGGCG
CGCACGTCGTCGTCAGCCTATGGCGAGTTGGGCTCACGTCGACCACCATGGCCGGGAGGCCACTCCACGATAAAGCCGAC
GCGCGCTAGCTTGACACACAGCTCGCTCGATCGACCCCATCTCACCGGCCCGTCCATTCCATTCCATCGAGCTAGCTCGC
TAATTGGTCTTTGGTCGACAATGGCTTGGAGGAGGGCGTCGATGCTGGCCGCGCTCGTGCTGGTGGCCGCGGCGACGTGC
GCCGACGCCGGTGACAGCTACGGCGCGTCCAAGTTCACGGTGACGGGCACCGTGCTGTGCCAGGACTGCACCAAGAACTG
GAACGCCTACGCCTACAACGCCAAGCCCATCGCCGGTACGGTTCGCCTGAACCCT-CTATACTTATCTCTAGC----ACG
TACCAGCCATTGCTCCTCGCCGGCGACCGGACGACGACATGATCGACGAATATGTATGCTGCGATGATTTGCAGGCAGCG
TGGTGGCGGTGACGTGCCTGGACGAGCACACGGGGCGGACGGTGATCCACCGCACGGACACGACGGACGAGGAGGGGGTT
TTCAAGGTGGACGTGCCGTACGCCCACGACGGCGGCAGCTGCCGCCTTGACCCGGCCCACTGCCTCGTCCGCATCGTCAG
GTCGGGGGACAAGGGCTGCGCCGTGTTCACCAACTTCAACAACGGCAGGACCGGCGAGAATCTATTGCGCCCCTCGAAGG
TCTCCTCCACCGAGGTCGGCTACTCGGCAGGGCCCTACTACGCCACCGTGCCGCAGTGCGACGTCGACGGCGACGACAAG
AGCTGCTCCTGATCGAGTCA--------TCT----CTTCGCGCTGGAATGATCGGTTCTCGCGTTTTGGTTTACGTTTTC
TACGGGTTCTCGATGGTTCCACGATAGCATACGTGTGCGTCTTTGTTTTGCTTCTAAAATGTCCGTGCGTCTG-------
-AACAGGATCTGATTTGTACTGTCAACGACTGTTGTTTTTT--GAGCTGGTCTATGTGTTACGTTTCACAATATCTGTTA
TAT------CTGGTCATAAATTAGTTCATACTAGCTAAGTGCATCTCTAACCCTCAAACCGTCCGGAT------------
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>SNPs
-------S------------------------------------------------------------------------
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------------------------------------------------------------------S-------------
-----------------S------------S-----------------------------------S-------------
-S-------------------------------------------------------------S----------------
----------------------------------------S---------------------------------------
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----------------------------------------S----------------------S----------------
--------------------------------------------S--S--------------------------------
------------------S-----------S-------S-----------------------------------------
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-----------------S------------S---------------------------------------------SS--
----------------------------------S---------------------------------------------
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------------------------------------------S---------------------S--------SSSS---
----------------S-------------------------S-----------------------S--S----------
-------------------------------------------------------------------------------S
------------------------------------------------------------------------S-------
--------------------------------------------------------------SS-SS---------SS--
--SS-S------------S----------------------------S-SS-----------------------------
----------------S--------------SSSS------------------S-------S------------------
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-----------------------------------S-----SS----------------------S--------------
---S--SSS----------------------------------------------S-------S----------S-----
S-----S------S-------S-S------S-------------------SS---S------S-----------------
-------S-----S-------S--S-S----S-------------------------------------------S----
------------------------------------S---------S----------S-----------------S----
------------S---------S----S-----------S------------------------------S-S-------
-S------------------------S---------------------------------------------S-------
----S--S---S---------------------------S--SS--------------------------SSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSS
>forward_995
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---------------CGACAATGGCTTGGAGGAGA---------------------------------------------
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>reverse_2499
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------------------ACGAGCACTGGTTTGTGGAA------------------------------------------
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