Multiple sequence alignment - TraesCS1A01G205600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G205600 chr1A 100.000 3626 0 0 1 3626 368195592 368199217 0.000000e+00 6697.0
1 TraesCS1A01G205600 chr1A 77.301 326 55 14 153 471 540177931 540178244 1.340000e-39 174.0
2 TraesCS1A01G205600 chr1A 96.364 55 1 1 3573 3626 551805854 551805908 4.990000e-14 89.8
3 TraesCS1A01G205600 chr1D 93.754 1553 86 9 843 2389 295133895 295135442 0.000000e+00 2320.0
4 TraesCS1A01G205600 chr1D 90.014 721 52 14 2393 3109 295135493 295136197 0.000000e+00 915.0
5 TraesCS1A01G205600 chr1D 85.816 839 104 12 1 835 295132977 295133804 0.000000e+00 876.0
6 TraesCS1A01G205600 chr1D 88.861 404 30 9 3089 3478 295136208 295136610 1.960000e-132 483.0
7 TraesCS1A01G205600 chr1D 80.387 413 69 5 48 458 77596868 77596466 1.640000e-78 303.0
8 TraesCS1A01G205600 chr1D 78.465 469 70 20 4 467 487440390 487440832 9.920000e-71 278.0
9 TraesCS1A01G205600 chr1D 92.157 51 3 1 3573 3622 100321466 100321416 1.810000e-08 71.3
10 TraesCS1A01G205600 chr1B 93.484 1504 75 16 899 2389 396531024 396532517 0.000000e+00 2213.0
11 TraesCS1A01G205600 chr1B 89.112 597 43 14 2390 2969 396532565 396533156 0.000000e+00 723.0
12 TraesCS1A01G205600 chr1B 89.683 252 22 4 3072 3320 396533162 396533412 5.840000e-83 318.0
13 TraesCS1A01G205600 chr1B 78.298 470 76 15 4 471 678867081 678866636 2.760000e-71 279.0
14 TraesCS1A01G205600 chr1B 95.918 98 4 0 3381 3478 396533519 396533616 3.750000e-35 159.0
15 TraesCS1A01G205600 chr7A 80.088 457 75 12 1 453 515172696 515173140 3.490000e-85 326.0
16 TraesCS1A01G205600 chr4D 80.142 423 67 12 4 421 499254012 499253602 2.120000e-77 300.0
17 TraesCS1A01G205600 chr4D 96.000 50 2 0 3573 3622 50885917 50885966 8.340000e-12 82.4
18 TraesCS1A01G205600 chr3B 78.302 424 67 15 4 421 504988922 504988518 2.160000e-62 250.0
19 TraesCS1A01G205600 chr3B 77.405 447 78 17 4 444 812411522 812411093 1.010000e-60 244.0
20 TraesCS1A01G205600 chr2A 79.050 358 67 8 100 454 4903434 4903786 4.680000e-59 239.0
21 TraesCS1A01G205600 chr2A 76.407 462 88 14 1 454 105681520 105681968 2.820000e-56 230.0
22 TraesCS1A01G205600 chr5D 81.119 286 44 3 1 286 109820843 109821118 1.690000e-53 220.0
23 TraesCS1A01G205600 chr5D 78.862 123 24 2 615 736 133440297 133440418 8.340000e-12 82.4
24 TraesCS1A01G205600 chr5D 93.333 45 1 1 3572 3616 207172456 207172498 8.400000e-07 65.8
25 TraesCS1A01G205600 chr6B 78.723 329 53 13 153 474 550054406 550054724 1.710000e-48 204.0
26 TraesCS1A01G205600 chr4A 77.922 308 56 9 168 469 606630923 606631224 8.000000e-42 182.0
27 TraesCS1A01G205600 chr5A 77.377 305 63 5 120 421 619358095 619357794 3.720000e-40 176.0
28 TraesCS1A01G205600 chr5B 77.273 308 60 8 169 471 54472550 54472852 4.810000e-39 172.0
29 TraesCS1A01G205600 chr2D 75.839 298 68 4 4 300 54080877 54081171 8.110000e-32 148.0
30 TraesCS1A01G205600 chr6D 80.745 161 30 1 584 743 469048126 469047966 1.370000e-24 124.0
31 TraesCS1A01G205600 chr6D 75.524 143 34 1 601 742 469046632 469046774 6.500000e-08 69.4
32 TraesCS1A01G205600 chr6D 92.105 38 3 0 777 814 47270222 47270185 2.000000e-03 54.7
33 TraesCS1A01G205600 chr7D 92.982 57 2 2 3572 3626 575301209 575301153 8.340000e-12 82.4
34 TraesCS1A01G205600 chr7B 96.000 50 2 0 3573 3622 69540914 69540865 8.340000e-12 82.4
35 TraesCS1A01G205600 chr7B 96.000 50 2 0 3573 3622 707033056 707033105 8.340000e-12 82.4
36 TraesCS1A01G205600 chr7B 96.000 50 2 0 3573 3622 707075731 707075780 8.340000e-12 82.4
37 TraesCS1A01G205600 chr3D 87.500 64 6 2 770 831 56393055 56392992 5.020000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G205600 chr1A 368195592 368199217 3625 False 6697.00 6697 100.00000 1 3626 1 chr1A.!!$F1 3625
1 TraesCS1A01G205600 chr1D 295132977 295136610 3633 False 1148.50 2320 89.61125 1 3478 4 chr1D.!!$F2 3477
2 TraesCS1A01G205600 chr1B 396531024 396533616 2592 False 853.25 2213 92.04925 899 3478 4 chr1B.!!$F1 2579

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
773 777 0.108945 GGTACCACTAGTGCGACACC 60.109 60.0 17.86 15.49 34.49 4.16 F
797 801 0.386476 CCGTATAGTGTGGCGCCTAA 59.614 55.0 29.70 13.28 0.00 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2004 2104 0.392060 TAGGCTGCTCAGTGTGCATG 60.392 55.000 19.38 14.16 39.86 4.06 R
2783 2957 1.141657 ACAAGCTGCTCAACTTCTCCA 59.858 47.619 1.00 0.00 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.748989 GCAGATGGAATAAGGTTCTCCCC 60.749 52.174 0.00 0.00 0.00 4.81
24 25 3.459598 CAGATGGAATAAGGTTCTCCCCA 59.540 47.826 0.00 0.00 0.00 4.96
25 26 4.105377 CAGATGGAATAAGGTTCTCCCCAT 59.895 45.833 0.00 0.00 34.84 4.00
26 27 4.352298 AGATGGAATAAGGTTCTCCCCATC 59.648 45.833 0.00 0.00 42.55 3.51
27 28 2.783510 TGGAATAAGGTTCTCCCCATCC 59.216 50.000 0.00 0.00 0.00 3.51
34 35 4.843331 TCTCCCCATCCAGCCCCC 62.843 72.222 0.00 0.00 0.00 5.40
42 43 0.259647 CATCCAGCCCCCATTCTGAA 59.740 55.000 0.00 0.00 32.26 3.02
44 45 0.549902 TCCAGCCCCCATTCTGAAGA 60.550 55.000 0.00 0.00 32.26 2.87
46 47 1.776667 CCAGCCCCCATTCTGAAGATA 59.223 52.381 0.00 0.00 32.26 1.98
60 61 8.646356 CATTCTGAAGATATTTCTAGCATCGTC 58.354 37.037 0.00 0.00 0.00 4.20
96 97 1.201647 GTTTGTCTCCGACGGATCTCA 59.798 52.381 18.71 13.59 34.95 3.27
114 115 7.421087 GATCTCATAGATCTCATGGGATTCA 57.579 40.000 19.79 0.76 45.83 2.57
120 121 1.123077 TCTCATGGGATTCAGTCGGG 58.877 55.000 0.00 0.00 0.00 5.14
121 122 1.123077 CTCATGGGATTCAGTCGGGA 58.877 55.000 0.00 0.00 0.00 5.14
165 166 3.056536 TGGATCCAGTCTTCGTTCTTCTG 60.057 47.826 11.44 0.00 0.00 3.02
167 168 3.371102 TCCAGTCTTCGTTCTTCTGTG 57.629 47.619 0.00 0.00 0.00 3.66
182 183 4.037565 TCTTCTGTGTTCGTGTGTCTACAT 59.962 41.667 0.00 0.00 39.39 2.29
221 222 1.808411 TGTTTCTCTTCATCGGTGGC 58.192 50.000 0.00 0.00 0.00 5.01
224 225 1.541310 TTCTCTTCATCGGTGGCGGT 61.541 55.000 0.00 0.00 0.00 5.68
236 237 0.736053 GTGGCGGTTTGTTGTTCTGA 59.264 50.000 0.00 0.00 0.00 3.27
256 257 3.043999 GCGTTGGTCCTATGGGGCT 62.044 63.158 0.00 0.00 37.39 5.19
261 262 2.241430 GTTGGTCCTATGGGGCTTTAGT 59.759 50.000 0.00 0.00 37.39 2.24
263 264 3.043418 TGGTCCTATGGGGCTTTAGTAC 58.957 50.000 0.00 0.00 37.39 2.73
267 268 4.040095 GTCCTATGGGGCTTTAGTACGATT 59.960 45.833 0.00 0.00 33.70 3.34
269 270 5.244626 TCCTATGGGGCTTTAGTACGATTAC 59.755 44.000 0.00 0.00 34.39 1.89
274 275 4.813161 GGGGCTTTAGTACGATTACTTTCC 59.187 45.833 0.00 0.00 39.43 3.13
294 295 6.822667 TTCCGACTGTCTACTACAACAATA 57.177 37.500 6.21 0.00 37.74 1.90
303 304 6.943146 TGTCTACTACAACAATATTTGCCCAA 59.057 34.615 0.00 0.00 34.29 4.12
304 305 7.120579 TGTCTACTACAACAATATTTGCCCAAG 59.879 37.037 0.00 0.00 34.29 3.61
307 308 6.010219 ACTACAACAATATTTGCCCAAGTCT 58.990 36.000 0.00 0.00 0.00 3.24
324 326 1.070445 CTGATGTGGAGGGGCGATC 59.930 63.158 0.00 0.00 0.00 3.69
355 358 2.669569 TTTGGCTCGCTCCAGTGC 60.670 61.111 0.00 0.00 37.44 4.40
364 367 1.877576 CGCTCCAGTGCCTGTAGTCA 61.878 60.000 2.18 0.00 0.00 3.41
366 369 1.065854 GCTCCAGTGCCTGTAGTCATT 60.066 52.381 2.18 0.00 0.00 2.57
384 387 5.367937 AGTCATTGCTAGGTGGTCTATGAAT 59.632 40.000 0.00 0.00 0.00 2.57
386 389 5.604231 TCATTGCTAGGTGGTCTATGAATCT 59.396 40.000 0.00 0.00 0.00 2.40
391 394 6.782494 TGCTAGGTGGTCTATGAATCTGAATA 59.218 38.462 0.00 0.00 0.00 1.75
393 396 8.317679 GCTAGGTGGTCTATGAATCTGAATATT 58.682 37.037 0.00 0.00 0.00 1.28
429 432 6.341316 TGATGCTCTTTGTACTATCTTGACC 58.659 40.000 0.00 0.00 0.00 4.02
433 436 6.071784 TGCTCTTTGTACTATCTTGACCGTTA 60.072 38.462 0.00 0.00 0.00 3.18
435 438 7.491696 GCTCTTTGTACTATCTTGACCGTTAAT 59.508 37.037 0.00 0.00 0.00 1.40
477 480 8.712285 TTCTCGTAAAGAAAAGAAAAGTCAGA 57.288 30.769 0.00 0.00 41.10 3.27
499 502 5.829924 AGATCCTCTAAACCCGTCGTAAATA 59.170 40.000 0.00 0.00 0.00 1.40
509 512 6.165700 ACCCGTCGTAAATATTTAGGTGAT 57.834 37.500 21.31 9.21 32.16 3.06
537 540 9.362151 AGTTTTAAAGATCTATTTGGTTGGACA 57.638 29.630 0.00 0.00 0.00 4.02
543 546 3.531538 TCTATTTGGTTGGACATCTCGC 58.468 45.455 0.00 0.00 0.00 5.03
544 547 2.198827 ATTTGGTTGGACATCTCGCA 57.801 45.000 0.00 0.00 0.00 5.10
545 548 1.522668 TTTGGTTGGACATCTCGCAG 58.477 50.000 0.00 0.00 0.00 5.18
546 549 0.396435 TTGGTTGGACATCTCGCAGT 59.604 50.000 0.00 0.00 0.00 4.40
547 550 1.262417 TGGTTGGACATCTCGCAGTA 58.738 50.000 0.00 0.00 0.00 2.74
548 551 1.831106 TGGTTGGACATCTCGCAGTAT 59.169 47.619 0.00 0.00 0.00 2.12
567 570 2.420628 TGCAGAAAAATTCACAGCCG 57.579 45.000 0.00 0.00 0.00 5.52
579 582 1.689813 TCACAGCCGGTCTGAGTTTTA 59.310 47.619 26.07 5.85 45.72 1.52
583 586 3.056749 ACAGCCGGTCTGAGTTTTACTAG 60.057 47.826 26.07 0.00 45.72 2.57
590 593 5.107065 CGGTCTGAGTTTTACTAGGCAAAAG 60.107 44.000 5.12 0.00 0.00 2.27
594 597 7.173390 GTCTGAGTTTTACTAGGCAAAAGTCAT 59.827 37.037 26.32 9.06 46.41 3.06
601 604 9.528018 TTTTACTAGGCAAAAGTCATTTTTCTG 57.472 29.630 0.00 0.00 36.87 3.02
604 607 5.596836 AGGCAAAAGTCATTTTTCTGACA 57.403 34.783 6.95 0.00 46.45 3.58
611 614 6.906157 AAGTCATTTTTCTGACATGTGGAT 57.094 33.333 1.15 0.00 46.45 3.41
624 627 8.212995 TCTGACATGTGGATGTAACAATATCAT 58.787 33.333 1.15 0.00 43.22 2.45
645 648 6.367421 TCATAAAATGAACCGTTGACGAAAG 58.633 36.000 4.91 0.00 37.74 2.62
691 694 0.179207 TAGCGCACGACAACTAGACG 60.179 55.000 11.47 0.00 41.15 4.18
719 723 2.032223 CTGTGCAGTGCTGGCTCT 59.968 61.111 17.60 0.00 0.00 4.09
720 724 1.600076 CTGTGCAGTGCTGGCTCTT 60.600 57.895 17.60 0.00 0.00 2.85
722 726 0.325933 TGTGCAGTGCTGGCTCTTAT 59.674 50.000 17.60 0.00 0.00 1.73
743 747 0.175073 CCCTACACGCCTAGTCAACC 59.825 60.000 0.00 0.00 0.00 3.77
744 748 1.183549 CCTACACGCCTAGTCAACCT 58.816 55.000 0.00 0.00 0.00 3.50
745 749 2.372264 CCTACACGCCTAGTCAACCTA 58.628 52.381 0.00 0.00 0.00 3.08
746 750 2.098770 CCTACACGCCTAGTCAACCTAC 59.901 54.545 0.00 0.00 0.00 3.18
748 752 2.176889 ACACGCCTAGTCAACCTACAT 58.823 47.619 0.00 0.00 0.00 2.29
754 758 3.684788 GCCTAGTCAACCTACATTGTGTG 59.315 47.826 0.00 0.00 0.00 3.82
757 761 4.967084 AGTCAACCTACATTGTGTGGTA 57.033 40.909 14.04 1.19 33.03 3.25
771 775 0.599558 GTGGTACCACTAGTGCGACA 59.400 55.000 33.47 10.06 43.12 4.35
773 777 0.108945 GGTACCACTAGTGCGACACC 60.109 60.000 17.86 15.49 34.49 4.16
779 783 0.886563 ACTAGTGCGACACCTACACC 59.113 55.000 0.00 0.00 34.49 4.16
781 785 0.890542 TAGTGCGACACCTACACCGT 60.891 55.000 6.39 0.00 34.49 4.83
793 797 3.700961 CACCGTATAGTGTGGCGC 58.299 61.111 0.00 0.00 32.89 6.53
797 801 0.386476 CCGTATAGTGTGGCGCCTAA 59.614 55.000 29.70 13.28 0.00 2.69
805 809 0.898326 TGTGGCGCCTAACTCTCAGA 60.898 55.000 29.70 0.00 0.00 3.27
819 823 4.547532 ACTCTCAGACGTTACACATTGAC 58.452 43.478 0.00 0.00 0.00 3.18
820 824 4.278669 ACTCTCAGACGTTACACATTGACT 59.721 41.667 0.00 0.00 0.00 3.41
822 826 4.982295 TCTCAGACGTTACACATTGACTTG 59.018 41.667 0.00 0.00 0.00 3.16
835 839 4.101430 ACATTGACTTGGCATTTTTCAGGT 59.899 37.500 0.00 0.00 0.00 4.00
836 840 4.751767 TTGACTTGGCATTTTTCAGGTT 57.248 36.364 0.00 0.00 0.00 3.50
838 842 3.703556 TGACTTGGCATTTTTCAGGTTGA 59.296 39.130 0.00 0.00 0.00 3.18
839 843 4.344679 TGACTTGGCATTTTTCAGGTTGAT 59.655 37.500 0.00 0.00 0.00 2.57
840 844 4.634199 ACTTGGCATTTTTCAGGTTGATG 58.366 39.130 0.00 0.00 0.00 3.07
845 932 5.070981 TGGCATTTTTCAGGTTGATGGTTTA 59.929 36.000 0.00 0.00 0.00 2.01
849 936 8.567104 GCATTTTTCAGGTTGATGGTTTATTTT 58.433 29.630 0.00 0.00 0.00 1.82
879 966 1.623081 TTCGCGCACGGAGTCAAATC 61.623 55.000 8.75 0.00 41.61 2.17
888 975 4.733523 GCACGGAGTCAAATCTGTTGTTTT 60.734 41.667 0.00 0.00 41.61 2.43
912 999 1.398451 CGTTTTGCTAGACGTGGCTTG 60.398 52.381 0.00 0.00 34.75 4.01
939 1026 2.233305 ACCCTGACGGAACATAGACT 57.767 50.000 0.00 0.00 34.64 3.24
1046 1134 2.078665 ACCGCCTAATCCTGCCCAT 61.079 57.895 0.00 0.00 0.00 4.00
1284 1372 1.544691 GCAGAGGACTCCAAGTTCGTA 59.455 52.381 0.00 0.00 0.00 3.43
1290 1378 0.677842 ACTCCAAGTTCGTACCGCTT 59.322 50.000 0.00 0.00 0.00 4.68
1441 1533 5.062183 TGTTTACTTCGAAATGCTGAGATCG 59.938 40.000 0.00 0.00 36.67 3.69
1503 1595 2.739292 TCGGATTCGATAAAAGCGAGG 58.261 47.619 0.00 0.00 40.88 4.63
1578 1670 3.365220 GCCGATATTGACAGATAGAACGC 59.635 47.826 0.00 0.00 0.00 4.84
1670 1762 6.659824 ACGGTGATTTCCTCAAGGTAATTAT 58.340 36.000 2.86 0.00 35.67 1.28
1707 1799 6.018507 GCTGTAACAGAAGTTTACCGAGAAAA 60.019 38.462 0.00 0.00 39.15 2.29
1710 1802 7.929785 TGTAACAGAAGTTTACCGAGAAAAGAT 59.070 33.333 0.00 0.00 39.15 2.40
1728 1823 9.014297 AGAAAAGATCAGGTTTGGTACATTTAG 57.986 33.333 0.00 0.00 39.30 1.85
1744 1839 5.065914 ACATTTAGCTGCAGAAGAACAGAA 58.934 37.500 20.43 0.16 35.90 3.02
1746 1841 6.039717 ACATTTAGCTGCAGAAGAACAGAAAA 59.960 34.615 20.43 3.89 35.90 2.29
1752 1847 4.847633 TGCAGAAGAACAGAAAATGAACG 58.152 39.130 0.00 0.00 0.00 3.95
1794 1890 6.643770 CACTGTTAAAAAGTAGGCGTCTTCTA 59.356 38.462 0.00 0.00 0.00 2.10
1795 1891 7.170320 CACTGTTAAAAAGTAGGCGTCTTCTAA 59.830 37.037 0.00 0.00 0.00 2.10
1796 1892 7.170489 ACTGTTAAAAAGTAGGCGTCTTCTAAC 59.830 37.037 0.00 0.00 0.00 2.34
1798 1894 2.935481 AAGTAGGCGTCTTCTAACGG 57.065 50.000 0.00 0.00 42.81 4.44
1857 1956 5.331876 AGACACTGAAATGTAGAGTAGCC 57.668 43.478 0.00 0.00 31.24 3.93
1885 1984 7.797819 AGCTTACTCTTATTCAGAAACAAACG 58.202 34.615 0.00 0.00 0.00 3.60
1902 2001 6.612247 ACAAACGTGTGAGATGAAAATACA 57.388 33.333 13.99 0.00 36.31 2.29
1909 2008 7.870954 ACGTGTGAGATGAAAATACAGTAGAAA 59.129 33.333 0.00 0.00 0.00 2.52
1925 2024 7.603651 ACAGTAGAAAGTTTGTCATACGATCT 58.396 34.615 0.00 8.32 0.00 2.75
1929 2028 7.962964 AGAAAGTTTGTCATACGATCTTGAA 57.037 32.000 0.00 0.00 0.00 2.69
1951 2051 4.311816 AGTTCAGCAAACTTGTTCATGG 57.688 40.909 0.00 0.00 46.26 3.66
1964 2064 2.009774 GTTCATGGGTCAGGTGATTCG 58.990 52.381 0.00 0.00 0.00 3.34
2004 2104 2.908688 AACAAACTTTGTGGGATGCC 57.091 45.000 7.93 0.00 44.59 4.40
2050 2150 4.718961 AGAAGCTGTCAAGGTAACAACAT 58.281 39.130 0.00 0.00 41.41 2.71
2052 2152 5.239525 AGAAGCTGTCAAGGTAACAACATTC 59.760 40.000 0.00 0.00 41.41 2.67
2053 2153 4.460263 AGCTGTCAAGGTAACAACATTCA 58.540 39.130 0.00 0.00 41.41 2.57
2079 2179 7.920682 ACAAACATGACATTTTCAGTCTTTACC 59.079 33.333 0.00 0.00 37.77 2.85
2098 2198 2.489329 ACCGCGCTTACTTACACTCTTA 59.511 45.455 5.56 0.00 0.00 2.10
2121 2221 3.498927 CTGAAATAACAGCCTTGCCAG 57.501 47.619 0.00 0.00 0.00 4.85
2143 2243 4.394300 AGATGCCTTCAATCACTTCTTTCG 59.606 41.667 0.00 0.00 0.00 3.46
2161 2261 7.982761 TCTTTCGTAGCCTTAAATTTTACCA 57.017 32.000 0.00 0.00 0.00 3.25
2181 2281 4.202121 ACCATCGATCGCTAGTTAACATGT 60.202 41.667 11.09 0.00 0.00 3.21
2187 2287 5.163992 CGATCGCTAGTTAACATGTGTGTTT 60.164 40.000 8.61 0.00 46.07 2.83
2241 2341 3.777106 TGCATCTTTTCTGGTCTGACT 57.223 42.857 7.85 0.00 0.00 3.41
2307 2407 4.826733 GGTACTAGTTCCTTAGTCCTAGGC 59.173 50.000 11.11 0.00 35.57 3.93
2356 2456 0.655733 AAACAGCGTCTTTCCACACG 59.344 50.000 0.00 0.00 39.09 4.49
2372 2472 2.845967 CACACGCACAAACAAAAGACTC 59.154 45.455 0.00 0.00 0.00 3.36
2374 2474 3.936453 ACACGCACAAACAAAAGACTCTA 59.064 39.130 0.00 0.00 0.00 2.43
2449 2596 1.654220 CACTTGTTCCCAACAGCGG 59.346 57.895 0.00 0.00 43.27 5.52
2701 2851 5.246981 TGAACTGATCCTCAAATGGTCTT 57.753 39.130 0.00 0.00 0.00 3.01
2731 2881 1.296392 CGCTCCAAGTGATCCACCA 59.704 57.895 0.00 0.00 34.49 4.17
2754 2905 6.238211 CCATGTAAATGTCAATCCTTCGACTC 60.238 42.308 0.00 0.00 33.18 3.36
2782 2956 6.767902 TCCATCTGCTGGTAAATGTTAATCTC 59.232 38.462 0.00 0.00 46.08 2.75
2783 2957 6.769822 CCATCTGCTGGTAAATGTTAATCTCT 59.230 38.462 0.00 0.00 40.49 3.10
2784 2958 7.255035 CCATCTGCTGGTAAATGTTAATCTCTG 60.255 40.741 0.00 0.00 40.49 3.35
2785 2959 6.115446 TCTGCTGGTAAATGTTAATCTCTGG 58.885 40.000 0.00 0.00 0.00 3.86
2786 2960 6.061022 TGCTGGTAAATGTTAATCTCTGGA 57.939 37.500 0.00 0.00 0.00 3.86
2787 2961 6.115446 TGCTGGTAAATGTTAATCTCTGGAG 58.885 40.000 0.00 0.00 0.00 3.86
2788 2962 6.070251 TGCTGGTAAATGTTAATCTCTGGAGA 60.070 38.462 2.63 2.63 42.37 3.71
2790 2964 7.011857 GCTGGTAAATGTTAATCTCTGGAGAAG 59.988 40.741 4.34 0.00 41.36 2.85
2793 2967 8.669243 GGTAAATGTTAATCTCTGGAGAAGTTG 58.331 37.037 4.34 0.00 41.36 3.16
2794 2968 9.436957 GTAAATGTTAATCTCTGGAGAAGTTGA 57.563 33.333 4.34 0.00 41.36 3.18
2795 2969 8.558973 AAATGTTAATCTCTGGAGAAGTTGAG 57.441 34.615 4.34 0.00 41.36 3.02
2798 2972 3.891422 ATCTCTGGAGAAGTTGAGCAG 57.109 47.619 4.34 0.00 41.36 4.24
2799 2973 1.274728 TCTCTGGAGAAGTTGAGCAGC 59.725 52.381 0.00 0.00 33.91 5.25
2800 2974 1.275856 CTCTGGAGAAGTTGAGCAGCT 59.724 52.381 0.00 0.00 0.00 4.24
2801 2975 1.696336 TCTGGAGAAGTTGAGCAGCTT 59.304 47.619 0.00 0.00 34.50 3.74
2802 2976 1.805345 CTGGAGAAGTTGAGCAGCTTG 59.195 52.381 4.28 0.00 31.89 4.01
2803 2977 1.141657 TGGAGAAGTTGAGCAGCTTGT 59.858 47.619 4.28 0.37 31.89 3.16
2804 2978 2.368548 TGGAGAAGTTGAGCAGCTTGTA 59.631 45.455 4.28 0.00 31.89 2.41
2805 2979 2.739379 GGAGAAGTTGAGCAGCTTGTAC 59.261 50.000 4.28 0.00 31.89 2.90
2806 2980 3.393800 GAGAAGTTGAGCAGCTTGTACA 58.606 45.455 4.28 0.00 31.89 2.90
2807 2981 3.999663 GAGAAGTTGAGCAGCTTGTACAT 59.000 43.478 4.28 0.00 31.89 2.29
2808 2982 4.392940 AGAAGTTGAGCAGCTTGTACATT 58.607 39.130 4.28 0.00 31.89 2.71
2809 2983 4.823989 AGAAGTTGAGCAGCTTGTACATTT 59.176 37.500 4.28 0.00 31.89 2.32
2810 2984 4.494350 AGTTGAGCAGCTTGTACATTTG 57.506 40.909 0.00 0.00 0.00 2.32
2811 2985 4.136796 AGTTGAGCAGCTTGTACATTTGA 58.863 39.130 0.00 0.00 0.00 2.69
2812 2986 4.580167 AGTTGAGCAGCTTGTACATTTGAA 59.420 37.500 0.00 0.00 0.00 2.69
2813 2987 5.067674 AGTTGAGCAGCTTGTACATTTGAAA 59.932 36.000 0.00 0.00 0.00 2.69
2814 2988 4.858935 TGAGCAGCTTGTACATTTGAAAC 58.141 39.130 0.00 0.00 0.00 2.78
2815 2989 4.580167 TGAGCAGCTTGTACATTTGAAACT 59.420 37.500 0.00 0.00 0.00 2.66
2816 2990 4.863491 AGCAGCTTGTACATTTGAAACTG 58.137 39.130 0.00 0.00 0.00 3.16
2817 2991 4.580167 AGCAGCTTGTACATTTGAAACTGA 59.420 37.500 0.00 0.00 0.00 3.41
2818 2992 4.913924 GCAGCTTGTACATTTGAAACTGAG 59.086 41.667 0.00 0.00 0.00 3.35
2819 2993 5.277974 GCAGCTTGTACATTTGAAACTGAGA 60.278 40.000 0.00 0.00 0.00 3.27
2820 2994 6.569226 GCAGCTTGTACATTTGAAACTGAGAT 60.569 38.462 0.00 0.00 0.00 2.75
2821 2995 6.800408 CAGCTTGTACATTTGAAACTGAGATG 59.200 38.462 0.00 0.00 0.00 2.90
2822 2996 6.712095 AGCTTGTACATTTGAAACTGAGATGA 59.288 34.615 0.00 0.00 0.00 2.92
2823 2997 7.229306 AGCTTGTACATTTGAAACTGAGATGAA 59.771 33.333 0.00 0.00 0.00 2.57
2824 2998 7.324616 GCTTGTACATTTGAAACTGAGATGAAC 59.675 37.037 0.00 0.00 0.00 3.18
2825 2999 8.450578 TTGTACATTTGAAACTGAGATGAACT 57.549 30.769 0.00 0.00 0.00 3.01
2826 3000 7.864686 TGTACATTTGAAACTGAGATGAACTG 58.135 34.615 0.00 0.00 0.00 3.16
2880 3064 7.675062 ACTGAGATGAACATTACTGAGACTTT 58.325 34.615 0.00 0.00 0.00 2.66
2881 3065 8.153550 ACTGAGATGAACATTACTGAGACTTTT 58.846 33.333 0.00 0.00 0.00 2.27
2882 3066 8.539770 TGAGATGAACATTACTGAGACTTTTC 57.460 34.615 0.00 0.00 0.00 2.29
2891 3075 7.987458 ACATTACTGAGACTTTTCTTCTTGACA 59.013 33.333 0.00 0.00 29.47 3.58
2972 3157 7.942341 TCTGTTGTTGGATTAAGGTACAGAATT 59.058 33.333 0.00 0.00 38.15 2.17
2973 3158 8.106247 TGTTGTTGGATTAAGGTACAGAATTC 57.894 34.615 0.00 0.00 0.00 2.17
2984 3169 2.803030 ACAGAATTCCTCAGCATGCT 57.197 45.000 16.30 16.30 34.76 3.79
2993 3178 1.945394 CCTCAGCATGCTTATCCACAC 59.055 52.381 19.98 0.00 34.76 3.82
2996 3181 1.402968 CAGCATGCTTATCCACACACC 59.597 52.381 19.98 0.00 0.00 4.16
2999 3184 2.435422 CATGCTTATCCACACACCACA 58.565 47.619 0.00 0.00 0.00 4.17
3008 3193 3.078097 TCCACACACCACATTTATTCCG 58.922 45.455 0.00 0.00 0.00 4.30
3021 3207 7.409697 CACATTTATTCCGTTTACTCCATGAG 58.590 38.462 0.00 0.00 35.52 2.90
3037 3223 3.494048 CCATGAGAAGGATGGTACTCTGC 60.494 52.174 0.00 0.00 36.38 4.26
3058 3244 3.893720 CATCCTTTGCTTCAACTGTGAC 58.106 45.455 0.00 0.00 31.90 3.67
3064 3250 0.435008 GCTTCAACTGTGACGCTACG 59.565 55.000 0.00 0.00 43.78 3.51
3068 3254 0.318360 CAACTGTGACGCTACGGTGA 60.318 55.000 5.04 0.00 39.96 4.02
3070 3256 0.386476 ACTGTGACGCTACGGTGAAA 59.614 50.000 3.57 0.00 38.68 2.69
3082 3268 6.129393 CGCTACGGTGAAATGAATAATTCTG 58.871 40.000 0.00 0.00 0.00 3.02
3107 3325 8.575589 TGCTGTCAACAATGAACAATACTATTT 58.424 29.630 0.00 0.00 37.30 1.40
3166 3384 7.274250 GCATGTGAGAAGTTTGTTTAATCATCC 59.726 37.037 0.00 0.00 0.00 3.51
3169 3387 7.012894 TGTGAGAAGTTTGTTTAATCATCCGTT 59.987 33.333 0.00 0.00 0.00 4.44
3251 3470 2.254546 ACTTGTCGGCAAAGTGATCA 57.745 45.000 3.10 0.00 33.73 2.92
3257 3476 3.629855 TGTCGGCAAAGTGATCAGAAAAA 59.370 39.130 0.00 0.00 0.00 1.94
3258 3477 3.975035 GTCGGCAAAGTGATCAGAAAAAC 59.025 43.478 0.00 0.00 0.00 2.43
3260 3479 4.097135 TCGGCAAAGTGATCAGAAAAACAA 59.903 37.500 0.00 0.00 0.00 2.83
3261 3480 4.984161 CGGCAAAGTGATCAGAAAAACAAT 59.016 37.500 0.00 0.00 0.00 2.71
3338 3557 3.415087 GCCTCTGCACCCCAGGAT 61.415 66.667 0.00 0.00 42.05 3.24
3361 3580 0.178846 TGAGGAAAGGGGGTGGATGA 60.179 55.000 0.00 0.00 0.00 2.92
3406 3678 5.841810 TCATGATCAAGGGTTGTTTTTCAC 58.158 37.500 0.00 0.00 0.00 3.18
3478 3750 6.057533 TGCCTAAGATAACACCTGAATCATG 58.942 40.000 0.00 0.00 0.00 3.07
3479 3751 6.126796 TGCCTAAGATAACACCTGAATCATGA 60.127 38.462 0.00 0.00 0.00 3.07
3480 3752 6.426328 GCCTAAGATAACACCTGAATCATGAG 59.574 42.308 0.09 0.00 0.00 2.90
3481 3753 7.687837 GCCTAAGATAACACCTGAATCATGAGA 60.688 40.741 0.09 0.00 0.00 3.27
3482 3754 7.655328 CCTAAGATAACACCTGAATCATGAGAC 59.345 40.741 0.09 0.00 0.00 3.36
3483 3755 5.595885 AGATAACACCTGAATCATGAGACG 58.404 41.667 0.09 0.00 0.00 4.18
3484 3756 2.680312 ACACCTGAATCATGAGACGG 57.320 50.000 0.09 2.77 0.00 4.79
3485 3757 1.208052 ACACCTGAATCATGAGACGGG 59.792 52.381 21.08 21.08 35.21 5.28
3486 3758 1.482182 CACCTGAATCATGAGACGGGA 59.518 52.381 26.36 0.00 33.52 5.14
3487 3759 2.103771 CACCTGAATCATGAGACGGGAT 59.896 50.000 26.36 13.85 33.52 3.85
3488 3760 2.774234 ACCTGAATCATGAGACGGGATT 59.226 45.455 26.36 6.07 34.16 3.01
3489 3761 3.200825 ACCTGAATCATGAGACGGGATTT 59.799 43.478 26.36 5.41 31.77 2.17
3490 3762 4.202441 CCTGAATCATGAGACGGGATTTT 58.798 43.478 19.14 0.00 31.77 1.82
3491 3763 4.274459 CCTGAATCATGAGACGGGATTTTC 59.726 45.833 19.14 8.05 31.77 2.29
3492 3764 3.871006 TGAATCATGAGACGGGATTTTCG 59.129 43.478 0.09 0.00 31.77 3.46
3493 3765 3.543680 ATCATGAGACGGGATTTTCGT 57.456 42.857 0.09 0.00 44.03 3.85
3494 3766 3.328382 TCATGAGACGGGATTTTCGTT 57.672 42.857 0.00 0.00 41.22 3.85
3495 3767 3.670625 TCATGAGACGGGATTTTCGTTT 58.329 40.909 0.00 0.00 41.22 3.60
3496 3768 4.069304 TCATGAGACGGGATTTTCGTTTT 58.931 39.130 0.00 0.00 41.22 2.43
3497 3769 4.153475 TCATGAGACGGGATTTTCGTTTTC 59.847 41.667 0.00 0.00 41.22 2.29
3498 3770 2.809696 TGAGACGGGATTTTCGTTTTCC 59.190 45.455 0.00 0.00 41.22 3.13
3499 3771 3.072211 GAGACGGGATTTTCGTTTTCCT 58.928 45.455 0.00 0.00 41.22 3.36
3500 3772 3.072211 AGACGGGATTTTCGTTTTCCTC 58.928 45.455 0.00 0.00 41.22 3.71
3501 3773 3.072211 GACGGGATTTTCGTTTTCCTCT 58.928 45.455 0.00 0.00 41.22 3.69
3502 3774 3.072211 ACGGGATTTTCGTTTTCCTCTC 58.928 45.455 0.00 0.00 37.61 3.20
3503 3775 2.418976 CGGGATTTTCGTTTTCCTCTCC 59.581 50.000 0.00 0.00 0.00 3.71
3504 3776 2.418976 GGGATTTTCGTTTTCCTCTCCG 59.581 50.000 0.00 0.00 0.00 4.63
3505 3777 3.072211 GGATTTTCGTTTTCCTCTCCGT 58.928 45.455 0.00 0.00 0.00 4.69
3506 3778 3.501062 GGATTTTCGTTTTCCTCTCCGTT 59.499 43.478 0.00 0.00 0.00 4.44
3507 3779 4.023450 GGATTTTCGTTTTCCTCTCCGTTT 60.023 41.667 0.00 0.00 0.00 3.60
3508 3780 4.541085 TTTTCGTTTTCCTCTCCGTTTC 57.459 40.909 0.00 0.00 0.00 2.78
3509 3781 3.464111 TTCGTTTTCCTCTCCGTTTCT 57.536 42.857 0.00 0.00 0.00 2.52
3510 3782 3.464111 TCGTTTTCCTCTCCGTTTCTT 57.536 42.857 0.00 0.00 0.00 2.52
3511 3783 3.387397 TCGTTTTCCTCTCCGTTTCTTC 58.613 45.455 0.00 0.00 0.00 2.87
3512 3784 3.069158 TCGTTTTCCTCTCCGTTTCTTCT 59.931 43.478 0.00 0.00 0.00 2.85
3513 3785 3.429207 CGTTTTCCTCTCCGTTTCTTCTC 59.571 47.826 0.00 0.00 0.00 2.87
3514 3786 4.633175 GTTTTCCTCTCCGTTTCTTCTCT 58.367 43.478 0.00 0.00 0.00 3.10
3515 3787 4.957684 TTTCCTCTCCGTTTCTTCTCTT 57.042 40.909 0.00 0.00 0.00 2.85
3516 3788 3.944055 TCCTCTCCGTTTCTTCTCTTG 57.056 47.619 0.00 0.00 0.00 3.02
3517 3789 3.497332 TCCTCTCCGTTTCTTCTCTTGA 58.503 45.455 0.00 0.00 0.00 3.02
3518 3790 4.090090 TCCTCTCCGTTTCTTCTCTTGAT 58.910 43.478 0.00 0.00 0.00 2.57
3519 3791 4.528596 TCCTCTCCGTTTCTTCTCTTGATT 59.471 41.667 0.00 0.00 0.00 2.57
3520 3792 4.629200 CCTCTCCGTTTCTTCTCTTGATTG 59.371 45.833 0.00 0.00 0.00 2.67
3521 3793 5.468540 TCTCCGTTTCTTCTCTTGATTGA 57.531 39.130 0.00 0.00 0.00 2.57
3522 3794 6.042638 TCTCCGTTTCTTCTCTTGATTGAT 57.957 37.500 0.00 0.00 0.00 2.57
3523 3795 5.871524 TCTCCGTTTCTTCTCTTGATTGATG 59.128 40.000 0.00 0.00 0.00 3.07
3524 3796 4.393062 TCCGTTTCTTCTCTTGATTGATGC 59.607 41.667 0.00 0.00 0.00 3.91
3525 3797 4.394300 CCGTTTCTTCTCTTGATTGATGCT 59.606 41.667 0.00 0.00 0.00 3.79
3526 3798 5.447010 CCGTTTCTTCTCTTGATTGATGCTC 60.447 44.000 0.00 0.00 0.00 4.26
3527 3799 5.121298 CGTTTCTTCTCTTGATTGATGCTCA 59.879 40.000 0.00 0.00 0.00 4.26
3528 3800 6.544622 GTTTCTTCTCTTGATTGATGCTCAG 58.455 40.000 0.00 0.00 0.00 3.35
3529 3801 5.417754 TCTTCTCTTGATTGATGCTCAGT 57.582 39.130 0.00 0.00 0.00 3.41
3530 3802 5.417811 TCTTCTCTTGATTGATGCTCAGTC 58.582 41.667 2.98 2.98 34.21 3.51
3531 3803 4.813750 TCTCTTGATTGATGCTCAGTCA 57.186 40.909 7.09 7.09 40.62 3.41
3532 3804 4.502016 TCTCTTGATTGATGCTCAGTCAC 58.498 43.478 9.68 0.00 41.77 3.67
3533 3805 4.222366 TCTCTTGATTGATGCTCAGTCACT 59.778 41.667 9.68 0.00 41.77 3.41
3534 3806 4.251268 TCTTGATTGATGCTCAGTCACTG 58.749 43.478 0.00 0.00 41.77 3.66
3535 3807 2.981898 TGATTGATGCTCAGTCACTGG 58.018 47.619 4.57 0.00 38.05 4.00
3536 3808 2.286872 GATTGATGCTCAGTCACTGGG 58.713 52.381 4.57 1.41 33.86 4.45
3537 3809 1.059098 TTGATGCTCAGTCACTGGGT 58.941 50.000 6.53 0.00 33.88 4.51
3538 3810 1.937191 TGATGCTCAGTCACTGGGTA 58.063 50.000 6.53 1.02 33.88 3.69
3539 3811 1.550524 TGATGCTCAGTCACTGGGTAC 59.449 52.381 6.53 0.00 33.88 3.34
3559 3831 7.462571 GGTACCCTGTGAATGTTTTATTTCT 57.537 36.000 0.00 0.00 0.00 2.52
3560 3832 7.535997 GGTACCCTGTGAATGTTTTATTTCTC 58.464 38.462 0.00 0.00 0.00 2.87
3561 3833 6.590234 ACCCTGTGAATGTTTTATTTCTCC 57.410 37.500 0.00 0.00 0.00 3.71
3562 3834 5.480422 ACCCTGTGAATGTTTTATTTCTCCC 59.520 40.000 0.00 0.00 0.00 4.30
3563 3835 5.480073 CCCTGTGAATGTTTTATTTCTCCCA 59.520 40.000 0.00 0.00 0.00 4.37
3564 3836 6.350445 CCCTGTGAATGTTTTATTTCTCCCAG 60.350 42.308 0.00 0.00 0.00 4.45
3565 3837 6.209391 CCTGTGAATGTTTTATTTCTCCCAGT 59.791 38.462 0.00 0.00 0.00 4.00
3566 3838 6.980593 TGTGAATGTTTTATTTCTCCCAGTG 58.019 36.000 0.00 0.00 0.00 3.66
3567 3839 5.863935 GTGAATGTTTTATTTCTCCCAGTGC 59.136 40.000 0.00 0.00 0.00 4.40
3568 3840 4.701956 ATGTTTTATTTCTCCCAGTGCG 57.298 40.909 0.00 0.00 0.00 5.34
3569 3841 2.817258 TGTTTTATTTCTCCCAGTGCGG 59.183 45.455 0.00 0.00 0.00 5.69
3570 3842 1.459450 TTTATTTCTCCCAGTGCGGC 58.541 50.000 0.00 0.00 0.00 6.53
3571 3843 0.742990 TTATTTCTCCCAGTGCGGCG 60.743 55.000 0.51 0.51 0.00 6.46
3572 3844 1.895020 TATTTCTCCCAGTGCGGCGT 61.895 55.000 9.37 0.00 0.00 5.68
3573 3845 2.748058 ATTTCTCCCAGTGCGGCGTT 62.748 55.000 9.37 0.00 0.00 4.84
3574 3846 2.951475 TTTCTCCCAGTGCGGCGTTT 62.951 55.000 9.37 0.00 0.00 3.60
3575 3847 2.951475 TTCTCCCAGTGCGGCGTTTT 62.951 55.000 9.37 0.00 0.00 2.43
3576 3848 2.517402 TCCCAGTGCGGCGTTTTT 60.517 55.556 9.37 0.00 0.00 1.94
3600 3872 8.680707 TTTTTAAAACAAGGCAAAAGATTTGC 57.319 26.923 17.18 17.18 44.22 3.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.843331 GGGGGCTGGATGGGGAGA 62.843 72.222 0.00 0.00 0.00 3.71
23 24 0.259647 TTCAGAATGGGGGCTGGATG 59.740 55.000 0.00 0.00 36.16 3.51
24 25 0.554792 CTTCAGAATGGGGGCTGGAT 59.445 55.000 0.00 0.00 36.16 3.41
25 26 0.549902 TCTTCAGAATGGGGGCTGGA 60.550 55.000 0.00 0.00 36.16 3.86
26 27 0.554792 ATCTTCAGAATGGGGGCTGG 59.445 55.000 0.00 0.00 36.16 4.85
27 28 3.803186 ATATCTTCAGAATGGGGGCTG 57.197 47.619 0.00 0.00 36.16 4.85
34 35 8.531622 ACGATGCTAGAAATATCTTCAGAATG 57.468 34.615 0.00 0.00 37.10 2.67
35 36 7.540400 CGACGATGCTAGAAATATCTTCAGAAT 59.460 37.037 0.00 0.00 37.10 2.40
42 43 4.156922 CCTCCGACGATGCTAGAAATATCT 59.843 45.833 0.00 0.00 39.82 1.98
44 45 3.193691 CCCTCCGACGATGCTAGAAATAT 59.806 47.826 0.00 0.00 0.00 1.28
46 47 1.341531 CCCTCCGACGATGCTAGAAAT 59.658 52.381 0.00 0.00 0.00 2.17
96 97 4.465660 CCGACTGAATCCCATGAGATCTAT 59.534 45.833 0.00 0.00 0.00 1.98
102 103 1.123077 TCCCGACTGAATCCCATGAG 58.877 55.000 0.00 0.00 0.00 2.90
103 104 1.806496 ATCCCGACTGAATCCCATGA 58.194 50.000 0.00 0.00 0.00 3.07
114 115 2.236395 CCACCTAAGACAAATCCCGACT 59.764 50.000 0.00 0.00 0.00 4.18
120 121 3.871594 CGTGGATCCACCTAAGACAAATC 59.128 47.826 34.05 9.42 43.49 2.17
121 122 3.263425 ACGTGGATCCACCTAAGACAAAT 59.737 43.478 34.05 5.66 43.49 2.32
147 148 2.693591 ACACAGAAGAACGAAGACTGGA 59.306 45.455 0.00 0.00 33.57 3.86
150 151 3.181489 ACGAACACAGAAGAACGAAGACT 60.181 43.478 0.00 0.00 0.00 3.24
165 166 3.367932 CCATCATGTAGACACACGAACAC 59.632 47.826 0.00 0.00 37.54 3.32
167 168 3.845178 TCCATCATGTAGACACACGAAC 58.155 45.455 0.00 0.00 37.54 3.95
182 183 9.152327 AGAAACATAGATCAGAAGTATCCATCA 57.848 33.333 0.00 0.00 0.00 3.07
221 222 1.002900 ACGCATCAGAACAACAAACCG 60.003 47.619 0.00 0.00 0.00 4.44
224 225 2.425312 ACCAACGCATCAGAACAACAAA 59.575 40.909 0.00 0.00 0.00 2.83
236 237 1.531748 CCCCATAGGACCAACGCAT 59.468 57.895 0.00 0.00 38.24 4.73
256 257 6.913170 ACAGTCGGAAAGTAATCGTACTAAA 58.087 36.000 0.00 0.00 39.79 1.85
261 262 5.877012 AGTAGACAGTCGGAAAGTAATCGTA 59.123 40.000 0.00 0.00 0.00 3.43
263 264 5.232610 AGTAGACAGTCGGAAAGTAATCG 57.767 43.478 0.00 0.00 0.00 3.34
267 268 5.764686 TGTTGTAGTAGACAGTCGGAAAGTA 59.235 40.000 0.00 0.00 39.88 2.24
269 270 5.117355 TGTTGTAGTAGACAGTCGGAAAG 57.883 43.478 0.00 0.00 39.88 2.62
274 275 7.391786 GCAAATATTGTTGTAGTAGACAGTCG 58.608 38.462 0.00 0.00 39.88 4.18
294 295 2.173519 CCACATCAGACTTGGGCAAAT 58.826 47.619 0.00 0.00 0.00 2.32
303 304 2.362369 CGCCCCTCCACATCAGACT 61.362 63.158 0.00 0.00 0.00 3.24
304 305 1.690219 ATCGCCCCTCCACATCAGAC 61.690 60.000 0.00 0.00 0.00 3.51
307 308 1.688884 TGATCGCCCCTCCACATCA 60.689 57.895 0.00 0.00 0.00 3.07
355 358 2.501723 ACCACCTAGCAATGACTACAGG 59.498 50.000 0.00 0.00 0.00 4.00
356 359 3.449018 AGACCACCTAGCAATGACTACAG 59.551 47.826 0.00 0.00 0.00 2.74
364 367 5.604231 TCAGATTCATAGACCACCTAGCAAT 59.396 40.000 0.00 0.00 0.00 3.56
366 369 4.546674 TCAGATTCATAGACCACCTAGCA 58.453 43.478 0.00 0.00 0.00 3.49
401 404 8.314021 TCAAGATAGTACAAAGAGCATCAGAAA 58.686 33.333 0.00 0.00 37.82 2.52
409 412 4.745649 ACGGTCAAGATAGTACAAAGAGC 58.254 43.478 0.00 0.00 0.00 4.09
410 413 8.928270 ATTAACGGTCAAGATAGTACAAAGAG 57.072 34.615 0.00 0.00 0.00 2.85
455 458 7.931948 AGGATCTGACTTTTCTTTTCTTTACGA 59.068 33.333 0.00 0.00 0.00 3.43
456 459 8.089115 AGGATCTGACTTTTCTTTTCTTTACG 57.911 34.615 0.00 0.00 0.00 3.18
477 480 6.661304 ATATTTACGACGGGTTTAGAGGAT 57.339 37.500 0.00 0.00 0.00 3.24
509 512 9.581289 TCCAACCAAATAGATCTTTAAAACTCA 57.419 29.630 0.00 0.00 0.00 3.41
519 522 5.605534 CGAGATGTCCAACCAAATAGATCT 58.394 41.667 0.00 0.00 0.00 2.75
543 546 4.860907 GGCTGTGAATTTTTCTGCATACTG 59.139 41.667 0.00 0.00 0.00 2.74
544 547 4.379813 CGGCTGTGAATTTTTCTGCATACT 60.380 41.667 0.00 0.00 0.00 2.12
545 548 3.853671 CGGCTGTGAATTTTTCTGCATAC 59.146 43.478 0.00 0.00 0.00 2.39
546 549 3.119531 CCGGCTGTGAATTTTTCTGCATA 60.120 43.478 0.00 0.00 0.00 3.14
547 550 2.353011 CCGGCTGTGAATTTTTCTGCAT 60.353 45.455 0.00 0.00 0.00 3.96
548 551 1.000385 CCGGCTGTGAATTTTTCTGCA 60.000 47.619 0.00 0.00 0.00 4.41
553 556 2.554032 CTCAGACCGGCTGTGAATTTTT 59.446 45.455 20.54 0.00 45.14 1.94
560 563 1.798813 GTAAAACTCAGACCGGCTGTG 59.201 52.381 20.54 20.02 45.14 3.66
567 570 5.763698 ACTTTTGCCTAGTAAAACTCAGACC 59.236 40.000 0.00 0.00 0.00 3.85
579 582 6.739112 GTCAGAAAAATGACTTTTGCCTAGT 58.261 36.000 0.00 0.00 45.03 2.57
594 597 6.951062 TGTTACATCCACATGTCAGAAAAA 57.049 33.333 0.00 0.00 42.66 1.94
624 627 5.738118 ACTTTCGTCAACGGTTCATTTTA 57.262 34.783 2.31 0.00 40.29 1.52
674 677 3.055905 GCGTCTAGTTGTCGTGCGC 62.056 63.158 0.00 0.00 36.75 6.09
678 681 0.601558 ATGTGGCGTCTAGTTGTCGT 59.398 50.000 0.00 0.00 0.00 4.34
679 682 1.710013 AATGTGGCGTCTAGTTGTCG 58.290 50.000 0.00 0.00 0.00 4.35
684 687 2.561419 ACAGTGTAATGTGGCGTCTAGT 59.439 45.455 0.00 0.00 30.46 2.57
685 688 2.923655 CACAGTGTAATGTGGCGTCTAG 59.076 50.000 4.66 0.00 45.53 2.43
719 723 1.684983 GACTAGGCGTGTAGGGCATAA 59.315 52.381 0.00 0.00 34.40 1.90
720 724 1.325355 GACTAGGCGTGTAGGGCATA 58.675 55.000 0.00 0.00 34.40 3.14
722 726 0.901114 TTGACTAGGCGTGTAGGGCA 60.901 55.000 0.00 0.00 34.40 5.36
754 758 0.108945 GGTGTCGCACTAGTGGTACC 60.109 60.000 23.95 19.09 34.40 3.34
757 761 0.886563 GTAGGTGTCGCACTAGTGGT 59.113 55.000 23.95 1.67 34.40 4.16
779 783 1.066605 AGTTAGGCGCCACACTATACG 59.933 52.381 31.54 0.00 0.00 3.06
781 785 2.621998 GAGAGTTAGGCGCCACACTATA 59.378 50.000 31.54 8.16 0.00 1.31
789 793 1.226717 CGTCTGAGAGTTAGGCGCC 60.227 63.158 21.89 21.89 36.41 6.53
793 797 4.761235 TGTGTAACGTCTGAGAGTTAGG 57.239 45.455 6.07 0.00 42.39 2.69
797 801 4.278669 AGTCAATGTGTAACGTCTGAGAGT 59.721 41.667 0.00 0.00 42.39 3.24
805 809 2.566913 TGCCAAGTCAATGTGTAACGT 58.433 42.857 0.00 0.00 42.39 3.99
819 823 3.998341 CCATCAACCTGAAAAATGCCAAG 59.002 43.478 0.00 0.00 0.00 3.61
820 824 3.390639 ACCATCAACCTGAAAAATGCCAA 59.609 39.130 0.00 0.00 0.00 4.52
822 826 3.683365 ACCATCAACCTGAAAAATGCC 57.317 42.857 0.00 0.00 0.00 4.40
864 951 1.136252 CAACAGATTTGACTCCGTGCG 60.136 52.381 0.00 0.00 0.00 5.34
865 952 1.873591 ACAACAGATTTGACTCCGTGC 59.126 47.619 0.00 0.00 0.00 5.34
888 975 1.868498 CCACGTCTAGCAAAACGGAAA 59.132 47.619 6.64 0.00 42.99 3.13
890 977 0.947180 GCCACGTCTAGCAAAACGGA 60.947 55.000 6.64 0.00 42.99 4.69
912 999 0.316204 TTCCGTCAGGGTTTCGTCTC 59.684 55.000 0.00 0.00 38.33 3.36
939 1026 3.999001 TGTGTTGTGTGGTTTTGTACGTA 59.001 39.130 0.00 0.00 0.00 3.57
1034 1122 1.697432 CGAAGGGTATGGGCAGGATTA 59.303 52.381 0.00 0.00 0.00 1.75
1046 1134 0.685458 GCAGGAGGGTACGAAGGGTA 60.685 60.000 0.00 0.00 0.00 3.69
1193 1281 3.628008 GGAAGGAAACCGGGAATATTGT 58.372 45.455 6.32 0.00 0.00 2.71
1290 1378 2.440796 ATCGGGTCCTCGGCGTTA 60.441 61.111 6.85 0.00 0.00 3.18
1331 1419 1.938861 CTTGTAACGCGCAACTGGT 59.061 52.632 5.73 0.00 0.00 4.00
1670 1762 1.595655 TTACAGCAGGCGCGAAACA 60.596 52.632 12.10 0.00 45.49 2.83
1707 1799 5.882557 CAGCTAAATGTACCAAACCTGATCT 59.117 40.000 0.00 0.00 0.00 2.75
1710 1802 3.756434 GCAGCTAAATGTACCAAACCTGA 59.244 43.478 0.00 0.00 0.00 3.86
1728 1823 4.494350 TCATTTTCTGTTCTTCTGCAGC 57.506 40.909 9.47 0.00 33.09 5.25
1744 1839 7.835634 GAGAAGACTCCTATTTCGTTCATTT 57.164 36.000 0.00 0.00 37.19 2.32
1781 1876 1.742268 ACTCCGTTAGAAGACGCCTAC 59.258 52.381 0.00 0.00 41.50 3.18
1836 1934 5.073311 TGGCTACTCTACATTTCAGTGTC 57.927 43.478 0.00 0.00 33.62 3.67
1857 1956 9.950680 TTTGTTTCTGAATAAGAGTAAGCTTTG 57.049 29.630 3.20 0.00 35.91 2.77
1870 1969 6.704050 TCATCTCACACGTTTGTTTCTGAATA 59.296 34.615 0.98 0.00 31.66 1.75
1885 1984 9.209175 ACTTTCTACTGTATTTTCATCTCACAC 57.791 33.333 0.00 0.00 0.00 3.82
1902 2001 8.304596 TCAAGATCGTATGACAAACTTTCTACT 58.695 33.333 0.00 0.00 0.00 2.57
1909 2008 7.441157 TGAACTTTCAAGATCGTATGACAAACT 59.559 33.333 0.00 0.00 33.55 2.66
1919 2018 4.576463 AGTTTGCTGAACTTTCAAGATCGT 59.424 37.500 0.94 0.00 46.34 3.73
1948 2048 1.351017 ACAACGAATCACCTGACCCAT 59.649 47.619 0.00 0.00 0.00 4.00
1951 2051 2.993899 CTGTACAACGAATCACCTGACC 59.006 50.000 0.00 0.00 0.00 4.02
1964 2064 6.711579 TGTTTCGTCATTTCTTCTGTACAAC 58.288 36.000 0.00 0.00 0.00 3.32
2004 2104 0.392060 TAGGCTGCTCAGTGTGCATG 60.392 55.000 19.38 14.16 39.86 4.06
2050 2150 7.099266 AGACTGAAAATGTCATGTTTGTGAA 57.901 32.000 0.00 0.00 35.07 3.18
2052 2152 7.760131 AAAGACTGAAAATGTCATGTTTGTG 57.240 32.000 0.00 0.00 35.07 3.33
2053 2153 7.920682 GGTAAAGACTGAAAATGTCATGTTTGT 59.079 33.333 0.00 0.00 35.07 2.83
2079 2179 3.061139 GCATAAGAGTGTAAGTAAGCGCG 60.061 47.826 0.00 0.00 0.00 6.86
2121 2221 4.154918 ACGAAAGAAGTGATTGAAGGCATC 59.845 41.667 0.00 0.00 0.00 3.91
2143 2243 7.288672 CGATCGATGGTAAAATTTAAGGCTAC 58.711 38.462 10.26 0.00 0.00 3.58
2161 2261 4.740205 CACACATGTTAACTAGCGATCGAT 59.260 41.667 21.57 16.78 0.00 3.59
2181 2281 6.951062 TTCATAATCTGTGAACCAAACACA 57.049 33.333 0.00 0.00 44.34 3.72
2241 2341 3.776417 TGAACATCATCATCTCCTCACCA 59.224 43.478 0.00 0.00 0.00 4.17
2273 2373 3.581770 GGAACTAGTACCTGTTTCTGGGT 59.418 47.826 0.00 0.00 39.40 4.51
2307 2407 7.940850 TCTTACAGTTTCTGAATTTCCTTTGG 58.059 34.615 3.70 0.00 35.18 3.28
2356 2456 5.050363 TCGTCATAGAGTCTTTTGTTTGTGC 60.050 40.000 0.00 0.00 0.00 4.57
2389 2489 4.012374 CAACCCTGAACAGTGAGCAATAT 58.988 43.478 0.00 0.00 0.00 1.28
2449 2596 2.301583 ACCTCAGCAAGAACCTTCTCTC 59.698 50.000 0.00 0.00 36.28 3.20
2701 2851 1.885887 CTTGGAGCGGGTGATTTCAAA 59.114 47.619 0.00 0.00 0.00 2.69
2731 2881 6.644347 AGAGTCGAAGGATTGACATTTACAT 58.356 36.000 0.00 0.00 37.58 2.29
2782 2956 1.805345 CAAGCTGCTCAACTTCTCCAG 59.195 52.381 1.00 0.00 0.00 3.86
2783 2957 1.141657 ACAAGCTGCTCAACTTCTCCA 59.858 47.619 1.00 0.00 0.00 3.86
2784 2958 1.889545 ACAAGCTGCTCAACTTCTCC 58.110 50.000 1.00 0.00 0.00 3.71
2785 2959 3.393800 TGTACAAGCTGCTCAACTTCTC 58.606 45.455 1.00 0.00 0.00 2.87
2786 2960 3.475566 TGTACAAGCTGCTCAACTTCT 57.524 42.857 1.00 0.00 0.00 2.85
2787 2961 4.756084 AATGTACAAGCTGCTCAACTTC 57.244 40.909 1.00 0.00 0.00 3.01
2788 2962 4.580167 TCAAATGTACAAGCTGCTCAACTT 59.420 37.500 1.00 0.00 0.00 2.66
2790 2964 4.488126 TCAAATGTACAAGCTGCTCAAC 57.512 40.909 1.00 2.26 0.00 3.18
2793 2967 4.913924 CAGTTTCAAATGTACAAGCTGCTC 59.086 41.667 1.00 0.00 0.00 4.26
2794 2968 4.580167 TCAGTTTCAAATGTACAAGCTGCT 59.420 37.500 0.00 0.00 30.71 4.24
2795 2969 4.858935 TCAGTTTCAAATGTACAAGCTGC 58.141 39.130 0.00 0.00 30.71 5.25
2798 2972 6.902341 TCATCTCAGTTTCAAATGTACAAGC 58.098 36.000 0.00 0.00 0.00 4.01
2799 2973 8.562892 AGTTCATCTCAGTTTCAAATGTACAAG 58.437 33.333 0.00 0.00 0.00 3.16
2800 2974 8.344831 CAGTTCATCTCAGTTTCAAATGTACAA 58.655 33.333 0.00 0.00 0.00 2.41
2801 2975 7.714813 TCAGTTCATCTCAGTTTCAAATGTACA 59.285 33.333 0.00 0.00 0.00 2.90
2802 2976 8.087982 TCAGTTCATCTCAGTTTCAAATGTAC 57.912 34.615 0.00 0.00 0.00 2.90
2803 2977 8.150296 TCTCAGTTCATCTCAGTTTCAAATGTA 58.850 33.333 0.00 0.00 0.00 2.29
2804 2978 6.994496 TCTCAGTTCATCTCAGTTTCAAATGT 59.006 34.615 0.00 0.00 0.00 2.71
2805 2979 7.430992 TCTCAGTTCATCTCAGTTTCAAATG 57.569 36.000 0.00 0.00 0.00 2.32
2806 2980 7.361885 GCATCTCAGTTCATCTCAGTTTCAAAT 60.362 37.037 0.00 0.00 0.00 2.32
2807 2981 6.072838 GCATCTCAGTTCATCTCAGTTTCAAA 60.073 38.462 0.00 0.00 0.00 2.69
2808 2982 5.410746 GCATCTCAGTTCATCTCAGTTTCAA 59.589 40.000 0.00 0.00 0.00 2.69
2809 2983 4.934001 GCATCTCAGTTCATCTCAGTTTCA 59.066 41.667 0.00 0.00 0.00 2.69
2810 2984 4.934001 TGCATCTCAGTTCATCTCAGTTTC 59.066 41.667 0.00 0.00 0.00 2.78
2811 2985 4.903054 TGCATCTCAGTTCATCTCAGTTT 58.097 39.130 0.00 0.00 0.00 2.66
2812 2986 4.548451 TGCATCTCAGTTCATCTCAGTT 57.452 40.909 0.00 0.00 0.00 3.16
2813 2987 4.222366 TCTTGCATCTCAGTTCATCTCAGT 59.778 41.667 0.00 0.00 0.00 3.41
2814 2988 4.756502 TCTTGCATCTCAGTTCATCTCAG 58.243 43.478 0.00 0.00 0.00 3.35
2815 2989 4.465305 TCTCTTGCATCTCAGTTCATCTCA 59.535 41.667 0.00 0.00 0.00 3.27
2816 2990 5.008619 TCTCTTGCATCTCAGTTCATCTC 57.991 43.478 0.00 0.00 0.00 2.75
2817 2991 5.128991 TGATCTCTTGCATCTCAGTTCATCT 59.871 40.000 0.00 0.00 0.00 2.90
2818 2992 5.358090 TGATCTCTTGCATCTCAGTTCATC 58.642 41.667 0.00 0.00 0.00 2.92
2819 2993 5.354842 TGATCTCTTGCATCTCAGTTCAT 57.645 39.130 0.00 0.00 0.00 2.57
2820 2994 4.813750 TGATCTCTTGCATCTCAGTTCA 57.186 40.909 0.00 0.00 0.00 3.18
2821 2995 5.585445 ACATTGATCTCTTGCATCTCAGTTC 59.415 40.000 0.00 0.00 0.00 3.01
2822 2996 5.498393 ACATTGATCTCTTGCATCTCAGTT 58.502 37.500 0.00 0.00 0.00 3.16
2823 2997 5.100344 ACATTGATCTCTTGCATCTCAGT 57.900 39.130 0.00 0.00 0.00 3.41
2824 2998 6.047231 TGTACATTGATCTCTTGCATCTCAG 58.953 40.000 0.00 0.00 0.00 3.35
2825 2999 5.981174 TGTACATTGATCTCTTGCATCTCA 58.019 37.500 0.00 0.00 0.00 3.27
2826 3000 7.493743 AATGTACATTGATCTCTTGCATCTC 57.506 36.000 20.19 0.00 0.00 2.75
2911 3095 8.330302 CAAGAATTAAGTGCTTCCAACAAAAAG 58.670 33.333 0.00 0.00 0.00 2.27
2950 3135 7.466804 AGGAATTCTGTACCTTAATCCAACAA 58.533 34.615 5.23 0.00 0.00 2.83
2972 3157 1.839354 TGTGGATAAGCATGCTGAGGA 59.161 47.619 23.48 7.68 0.00 3.71
2973 3158 1.945394 GTGTGGATAAGCATGCTGAGG 59.055 52.381 23.48 0.00 0.00 3.86
2984 3169 5.355630 CGGAATAAATGTGGTGTGTGGATAA 59.644 40.000 0.00 0.00 0.00 1.75
2993 3178 5.413213 TGGAGTAAACGGAATAAATGTGGTG 59.587 40.000 0.00 0.00 0.00 4.17
2996 3181 7.279981 TCTCATGGAGTAAACGGAATAAATGTG 59.720 37.037 0.00 0.00 0.00 3.21
2999 3184 7.499232 CCTTCTCATGGAGTAAACGGAATAAAT 59.501 37.037 0.00 0.00 0.00 1.40
3008 3193 5.104259 ACCATCCTTCTCATGGAGTAAAC 57.896 43.478 5.70 0.00 43.32 2.01
3037 3223 3.607775 CGTCACAGTTGAAGCAAAGGATG 60.608 47.826 0.00 0.00 31.90 3.51
3053 3239 1.000052 TCATTTCACCGTAGCGTCACA 60.000 47.619 0.00 0.00 0.00 3.58
3057 3243 5.815740 AGAATTATTCATTTCACCGTAGCGT 59.184 36.000 7.74 0.00 0.00 5.07
3058 3244 6.129393 CAGAATTATTCATTTCACCGTAGCG 58.871 40.000 7.74 0.00 0.00 4.26
3064 3250 6.855836 TGACAGCAGAATTATTCATTTCACC 58.144 36.000 7.74 0.00 0.00 4.02
3068 3254 9.146984 CATTGTTGACAGCAGAATTATTCATTT 57.853 29.630 7.74 0.00 0.00 2.32
3070 3256 8.058667 TCATTGTTGACAGCAGAATTATTCAT 57.941 30.769 7.74 0.00 0.00 2.57
3082 3268 8.970691 AAATAGTATTGTTCATTGTTGACAGC 57.029 30.769 0.00 0.00 0.00 4.40
3107 3325 6.178324 TCATCCGTACTACTTCAAGAGAGAA 58.822 40.000 0.00 0.00 0.00 2.87
3111 3329 4.096532 TGCTCATCCGTACTACTTCAAGAG 59.903 45.833 0.00 0.00 0.00 2.85
3237 3456 3.629855 TGTTTTTCTGATCACTTTGCCGA 59.370 39.130 0.00 0.00 0.00 5.54
3325 3544 1.679977 CAACCATCCTGGGGTGCAG 60.680 63.158 0.00 0.00 43.37 4.41
3326 3545 2.141011 CTCAACCATCCTGGGGTGCA 62.141 60.000 0.00 0.00 45.60 4.57
3327 3546 1.379044 CTCAACCATCCTGGGGTGC 60.379 63.158 0.00 0.00 45.60 5.01
3329 3548 0.477597 TTCCTCAACCATCCTGGGGT 60.478 55.000 0.00 0.00 43.37 4.95
3330 3549 0.704076 TTTCCTCAACCATCCTGGGG 59.296 55.000 0.00 0.00 43.37 4.96
3333 3552 1.341383 CCCCTTTCCTCAACCATCCTG 60.341 57.143 0.00 0.00 0.00 3.86
3338 3557 1.725169 CCACCCCCTTTCCTCAACCA 61.725 60.000 0.00 0.00 0.00 3.67
3341 3560 0.704076 CATCCACCCCCTTTCCTCAA 59.296 55.000 0.00 0.00 0.00 3.02
3478 3750 3.072211 AGGAAAACGAAAATCCCGTCTC 58.928 45.455 0.00 0.00 39.57 3.36
3479 3751 3.072211 GAGGAAAACGAAAATCCCGTCT 58.928 45.455 0.00 0.00 39.57 4.18
3480 3752 3.072211 AGAGGAAAACGAAAATCCCGTC 58.928 45.455 0.00 0.00 39.57 4.79
3481 3753 3.072211 GAGAGGAAAACGAAAATCCCGT 58.928 45.455 0.00 0.00 42.61 5.28
3482 3754 2.418976 GGAGAGGAAAACGAAAATCCCG 59.581 50.000 0.00 0.00 33.55 5.14
3483 3755 2.418976 CGGAGAGGAAAACGAAAATCCC 59.581 50.000 0.00 0.00 33.55 3.85
3484 3756 3.072211 ACGGAGAGGAAAACGAAAATCC 58.928 45.455 0.00 0.00 0.00 3.01
3485 3757 4.744136 AACGGAGAGGAAAACGAAAATC 57.256 40.909 0.00 0.00 0.00 2.17
3486 3758 4.820173 AGAAACGGAGAGGAAAACGAAAAT 59.180 37.500 0.00 0.00 0.00 1.82
3487 3759 4.193865 AGAAACGGAGAGGAAAACGAAAA 58.806 39.130 0.00 0.00 0.00 2.29
3488 3760 3.800531 AGAAACGGAGAGGAAAACGAAA 58.199 40.909 0.00 0.00 0.00 3.46
3489 3761 3.464111 AGAAACGGAGAGGAAAACGAA 57.536 42.857 0.00 0.00 0.00 3.85
3490 3762 3.069158 AGAAGAAACGGAGAGGAAAACGA 59.931 43.478 0.00 0.00 0.00 3.85
3491 3763 3.391049 AGAAGAAACGGAGAGGAAAACG 58.609 45.455 0.00 0.00 0.00 3.60
3492 3764 4.633175 AGAGAAGAAACGGAGAGGAAAAC 58.367 43.478 0.00 0.00 0.00 2.43
3493 3765 4.957684 AGAGAAGAAACGGAGAGGAAAA 57.042 40.909 0.00 0.00 0.00 2.29
3494 3766 4.344102 TCAAGAGAAGAAACGGAGAGGAAA 59.656 41.667 0.00 0.00 0.00 3.13
3495 3767 3.895656 TCAAGAGAAGAAACGGAGAGGAA 59.104 43.478 0.00 0.00 0.00 3.36
3496 3768 3.497332 TCAAGAGAAGAAACGGAGAGGA 58.503 45.455 0.00 0.00 0.00 3.71
3497 3769 3.944055 TCAAGAGAAGAAACGGAGAGG 57.056 47.619 0.00 0.00 0.00 3.69
3498 3770 5.473931 TCAATCAAGAGAAGAAACGGAGAG 58.526 41.667 0.00 0.00 0.00 3.20
3499 3771 5.468540 TCAATCAAGAGAAGAAACGGAGA 57.531 39.130 0.00 0.00 0.00 3.71
3500 3772 5.447010 GCATCAATCAAGAGAAGAAACGGAG 60.447 44.000 0.00 0.00 0.00 4.63
3501 3773 4.393062 GCATCAATCAAGAGAAGAAACGGA 59.607 41.667 0.00 0.00 0.00 4.69
3502 3774 4.394300 AGCATCAATCAAGAGAAGAAACGG 59.606 41.667 0.00 0.00 0.00 4.44
3503 3775 5.121298 TGAGCATCAATCAAGAGAAGAAACG 59.879 40.000 0.00 0.00 45.97 3.60
3504 3776 6.492007 TGAGCATCAATCAAGAGAAGAAAC 57.508 37.500 0.00 0.00 45.97 2.78
3520 3792 1.134670 GGTACCCAGTGACTGAGCATC 60.135 57.143 15.33 0.00 32.44 3.91
3521 3793 0.905357 GGTACCCAGTGACTGAGCAT 59.095 55.000 15.33 0.00 32.44 3.79
3522 3794 2.362242 GGTACCCAGTGACTGAGCA 58.638 57.895 15.33 0.00 32.44 4.26
3536 3808 7.362660 GGGAGAAATAAAACATTCACAGGGTAC 60.363 40.741 0.00 0.00 0.00 3.34
3537 3809 6.661805 GGGAGAAATAAAACATTCACAGGGTA 59.338 38.462 0.00 0.00 0.00 3.69
3538 3810 5.480422 GGGAGAAATAAAACATTCACAGGGT 59.520 40.000 0.00 0.00 0.00 4.34
3539 3811 5.480073 TGGGAGAAATAAAACATTCACAGGG 59.520 40.000 0.00 0.00 0.00 4.45
3540 3812 6.209391 ACTGGGAGAAATAAAACATTCACAGG 59.791 38.462 6.52 0.00 32.87 4.00
3541 3813 7.086376 CACTGGGAGAAATAAAACATTCACAG 58.914 38.462 0.36 0.36 33.83 3.66
3542 3814 6.516527 GCACTGGGAGAAATAAAACATTCACA 60.517 38.462 0.00 0.00 0.00 3.58
3543 3815 5.863935 GCACTGGGAGAAATAAAACATTCAC 59.136 40.000 0.00 0.00 0.00 3.18
3544 3816 5.335583 CGCACTGGGAGAAATAAAACATTCA 60.336 40.000 0.00 0.00 0.00 2.57
3545 3817 5.095490 CGCACTGGGAGAAATAAAACATTC 58.905 41.667 0.00 0.00 0.00 2.67
3546 3818 4.082245 CCGCACTGGGAGAAATAAAACATT 60.082 41.667 0.00 0.00 0.00 2.71
3547 3819 3.443681 CCGCACTGGGAGAAATAAAACAT 59.556 43.478 0.00 0.00 0.00 2.71
3548 3820 2.817258 CCGCACTGGGAGAAATAAAACA 59.183 45.455 0.00 0.00 0.00 2.83
3549 3821 2.415491 GCCGCACTGGGAGAAATAAAAC 60.415 50.000 0.00 0.00 38.63 2.43
3550 3822 1.816224 GCCGCACTGGGAGAAATAAAA 59.184 47.619 0.00 0.00 38.63 1.52
3551 3823 1.459450 GCCGCACTGGGAGAAATAAA 58.541 50.000 0.00 0.00 38.63 1.40
3552 3824 0.742990 CGCCGCACTGGGAGAAATAA 60.743 55.000 0.00 0.00 38.63 1.40
3553 3825 1.153449 CGCCGCACTGGGAGAAATA 60.153 57.895 0.00 0.00 38.63 1.40
3554 3826 2.436646 CGCCGCACTGGGAGAAAT 60.437 61.111 0.00 0.00 38.63 2.17
3555 3827 2.951475 AAACGCCGCACTGGGAGAAA 62.951 55.000 0.00 0.00 38.63 2.52
3556 3828 2.951475 AAAACGCCGCACTGGGAGAA 62.951 55.000 0.00 0.00 38.63 2.87
3557 3829 2.951475 AAAAACGCCGCACTGGGAGA 62.951 55.000 0.00 0.00 38.63 3.71
3558 3830 2.551912 AAAAACGCCGCACTGGGAG 61.552 57.895 0.00 0.00 38.63 4.30
3559 3831 2.517402 AAAAACGCCGCACTGGGA 60.517 55.556 0.00 0.00 38.63 4.37
3575 3847 8.680707 GCAAATCTTTTGCCTTGTTTTAAAAA 57.319 26.923 12.74 0.00 39.38 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.