Multiple sequence alignment - TraesCS1A01G200000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G200000 chr1A 100.000 3062 0 0 1 3062 359688498 359691559 0.000000e+00 5655
1 TraesCS1A01G200000 chr1D 94.817 2354 90 17 727 3062 288147213 288149552 0.000000e+00 3642
2 TraesCS1A01G200000 chr1B 93.600 2422 106 20 673 3062 389734798 389737202 0.000000e+00 3568
3 TraesCS1A01G200000 chr1B 86.478 636 59 15 13 630 652445177 652444551 0.000000e+00 673
4 TraesCS1A01G200000 chr3A 94.595 629 31 3 12 640 534321621 534322246 0.000000e+00 970
5 TraesCS1A01G200000 chr3A 94.037 587 31 4 13 599 72900380 72900962 0.000000e+00 887
6 TraesCS1A01G200000 chr3A 91.719 640 32 2 1 640 191886640 191886022 0.000000e+00 869
7 TraesCS1A01G200000 chr4A 91.135 643 49 7 1 640 611870556 611871193 0.000000e+00 865
8 TraesCS1A01G200000 chr4A 91.291 643 30 5 1 640 284953750 284953131 0.000000e+00 854
9 TraesCS1A01G200000 chr4A 87.695 642 59 10 12 640 693202395 693201761 0.000000e+00 730
10 TraesCS1A01G200000 chr4A 84.326 638 69 21 21 642 625254211 625253589 2.030000e-166 595
11 TraesCS1A01G200000 chr3D 88.837 645 51 10 11 640 596433423 596432785 0.000000e+00 773
12 TraesCS1A01G200000 chrUn 88.062 645 55 10 11 640 371466972 371466335 0.000000e+00 745
13 TraesCS1A01G200000 chrUn 86.765 612 60 11 43 640 372732049 372732653 0.000000e+00 662
14 TraesCS1A01G200000 chr6B 86.364 638 61 18 19 640 45497170 45496543 0.000000e+00 673


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G200000 chr1A 359688498 359691559 3061 False 5655 5655 100.000 1 3062 1 chr1A.!!$F1 3061
1 TraesCS1A01G200000 chr1D 288147213 288149552 2339 False 3642 3642 94.817 727 3062 1 chr1D.!!$F1 2335
2 TraesCS1A01G200000 chr1B 389734798 389737202 2404 False 3568 3568 93.600 673 3062 1 chr1B.!!$F1 2389
3 TraesCS1A01G200000 chr1B 652444551 652445177 626 True 673 673 86.478 13 630 1 chr1B.!!$R1 617
4 TraesCS1A01G200000 chr3A 534321621 534322246 625 False 970 970 94.595 12 640 1 chr3A.!!$F2 628
5 TraesCS1A01G200000 chr3A 72900380 72900962 582 False 887 887 94.037 13 599 1 chr3A.!!$F1 586
6 TraesCS1A01G200000 chr3A 191886022 191886640 618 True 869 869 91.719 1 640 1 chr3A.!!$R1 639
7 TraesCS1A01G200000 chr4A 611870556 611871193 637 False 865 865 91.135 1 640 1 chr4A.!!$F1 639
8 TraesCS1A01G200000 chr4A 284953131 284953750 619 True 854 854 91.291 1 640 1 chr4A.!!$R1 639
9 TraesCS1A01G200000 chr4A 693201761 693202395 634 True 730 730 87.695 12 640 1 chr4A.!!$R3 628
10 TraesCS1A01G200000 chr4A 625253589 625254211 622 True 595 595 84.326 21 642 1 chr4A.!!$R2 621
11 TraesCS1A01G200000 chr3D 596432785 596433423 638 True 773 773 88.837 11 640 1 chr3D.!!$R1 629
12 TraesCS1A01G200000 chrUn 371466335 371466972 637 True 745 745 88.062 11 640 1 chrUn.!!$R1 629
13 TraesCS1A01G200000 chrUn 372732049 372732653 604 False 662 662 86.765 43 640 1 chrUn.!!$F1 597
14 TraesCS1A01G200000 chr6B 45496543 45497170 627 True 673 673 86.364 19 640 1 chr6B.!!$R1 621

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
654 848 0.179062 CTCCCTCTGAAAGCCATCCG 60.179 60.0 0.0 0.0 0.0 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2399 2625 0.396435 TCAACAGGAACGCCTCACAT 59.604 50.0 0.0 0.0 44.8 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 8.870160 TGAACTGTTTTTCAAAATCGATGAAT 57.130 26.923 0.00 0.00 36.72 2.57
202 289 8.715088 GGATGAACTCTTTTTCAAAATTGATGG 58.285 33.333 0.00 0.00 38.95 3.51
205 292 8.477256 TGAACTCTTTTTCAAAATTGATGGACT 58.523 29.630 0.00 0.00 37.00 3.85
206 293 8.652810 AACTCTTTTTCAAAATTGATGGACTG 57.347 30.769 0.00 0.00 37.00 3.51
207 294 7.785033 ACTCTTTTTCAAAATTGATGGACTGT 58.215 30.769 0.00 0.00 37.00 3.55
208 295 8.260114 ACTCTTTTTCAAAATTGATGGACTGTT 58.740 29.630 0.00 0.00 37.00 3.16
209 296 9.101655 CTCTTTTTCAAAATTGATGGACTGTTT 57.898 29.630 0.00 0.00 37.00 2.83
210 297 9.447157 TCTTTTTCAAAATTGATGGACTGTTTT 57.553 25.926 0.00 0.00 37.00 2.43
213 300 8.783833 TTTCAAAATTGATGGACTGTTTTTCA 57.216 26.923 0.00 0.00 37.00 2.69
214 301 8.783833 TTCAAAATTGATGGACTGTTTTTCAA 57.216 26.923 0.00 3.74 37.00 2.69
215 302 8.783833 TCAAAATTGATGGACTGTTTTTCAAA 57.216 26.923 0.00 0.00 30.81 2.69
216 303 9.224267 TCAAAATTGATGGACTGTTTTTCAAAA 57.776 25.926 0.00 0.00 30.81 2.44
217 304 9.276397 CAAAATTGATGGACTGTTTTTCAAAAC 57.724 29.630 8.02 8.02 46.40 2.43
218 305 7.552458 AATTGATGGACTGTTTTTCAAAACC 57.448 32.000 11.70 0.00 45.82 3.27
219 306 4.677584 TGATGGACTGTTTTTCAAAACCG 58.322 39.130 11.70 8.45 45.82 4.44
220 307 4.399618 TGATGGACTGTTTTTCAAAACCGA 59.600 37.500 11.70 0.00 45.82 4.69
221 308 4.993029 TGGACTGTTTTTCAAAACCGAT 57.007 36.364 11.70 0.00 45.82 4.18
222 309 4.677584 TGGACTGTTTTTCAAAACCGATG 58.322 39.130 11.70 3.84 45.82 3.84
223 310 4.158764 TGGACTGTTTTTCAAAACCGATGT 59.841 37.500 11.70 6.38 45.82 3.06
224 311 5.357314 TGGACTGTTTTTCAAAACCGATGTA 59.643 36.000 11.70 0.00 45.82 2.29
225 312 5.684184 GGACTGTTTTTCAAAACCGATGTAC 59.316 40.000 11.70 4.28 45.82 2.90
226 313 6.445357 ACTGTTTTTCAAAACCGATGTACT 57.555 33.333 11.70 0.00 45.82 2.73
491 672 0.949105 GTCAACTGGTCAACCGCGAT 60.949 55.000 8.23 0.00 39.43 4.58
641 835 1.826709 GCCAACTAGGAGCTCCCTC 59.173 63.158 29.54 4.56 43.31 4.30
642 836 0.689412 GCCAACTAGGAGCTCCCTCT 60.689 60.000 29.54 13.83 43.31 3.69
643 837 1.118838 CCAACTAGGAGCTCCCTCTG 58.881 60.000 29.54 19.68 43.31 3.35
644 838 1.342474 CCAACTAGGAGCTCCCTCTGA 60.342 57.143 29.54 8.81 43.31 3.27
645 839 2.461695 CAACTAGGAGCTCCCTCTGAA 58.538 52.381 29.54 7.20 43.31 3.02
646 840 2.834549 CAACTAGGAGCTCCCTCTGAAA 59.165 50.000 29.54 5.43 43.31 2.69
647 841 2.745968 ACTAGGAGCTCCCTCTGAAAG 58.254 52.381 29.54 16.21 43.31 2.62
648 842 1.412343 CTAGGAGCTCCCTCTGAAAGC 59.588 57.143 29.54 0.00 43.31 3.51
649 843 1.223211 GGAGCTCCCTCTGAAAGCC 59.777 63.158 23.19 0.00 38.21 4.35
650 844 1.557269 GGAGCTCCCTCTGAAAGCCA 61.557 60.000 23.19 0.00 38.21 4.75
651 845 0.545646 GAGCTCCCTCTGAAAGCCAT 59.454 55.000 0.87 0.00 36.69 4.40
652 846 0.545646 AGCTCCCTCTGAAAGCCATC 59.454 55.000 3.55 0.00 36.69 3.51
653 847 0.465278 GCTCCCTCTGAAAGCCATCC 60.465 60.000 0.00 0.00 0.00 3.51
654 848 0.179062 CTCCCTCTGAAAGCCATCCG 60.179 60.000 0.00 0.00 0.00 4.18
655 849 0.617535 TCCCTCTGAAAGCCATCCGA 60.618 55.000 0.00 0.00 0.00 4.55
656 850 0.462759 CCCTCTGAAAGCCATCCGAC 60.463 60.000 0.00 0.00 0.00 4.79
657 851 0.250234 CCTCTGAAAGCCATCCGACA 59.750 55.000 0.00 0.00 0.00 4.35
658 852 1.339055 CCTCTGAAAGCCATCCGACAA 60.339 52.381 0.00 0.00 0.00 3.18
659 853 2.426522 CTCTGAAAGCCATCCGACAAA 58.573 47.619 0.00 0.00 0.00 2.83
660 854 2.151202 TCTGAAAGCCATCCGACAAAC 58.849 47.619 0.00 0.00 0.00 2.93
661 855 1.200020 CTGAAAGCCATCCGACAAACC 59.800 52.381 0.00 0.00 0.00 3.27
662 856 1.243902 GAAAGCCATCCGACAAACCA 58.756 50.000 0.00 0.00 0.00 3.67
663 857 1.200020 GAAAGCCATCCGACAAACCAG 59.800 52.381 0.00 0.00 0.00 4.00
664 858 1.244019 AAGCCATCCGACAAACCAGC 61.244 55.000 0.00 0.00 0.00 4.85
665 859 1.675641 GCCATCCGACAAACCAGCT 60.676 57.895 0.00 0.00 0.00 4.24
666 860 1.244019 GCCATCCGACAAACCAGCTT 61.244 55.000 0.00 0.00 0.00 3.74
667 861 1.948611 GCCATCCGACAAACCAGCTTA 60.949 52.381 0.00 0.00 0.00 3.09
668 862 2.432444 CCATCCGACAAACCAGCTTAA 58.568 47.619 0.00 0.00 0.00 1.85
669 863 2.420022 CCATCCGACAAACCAGCTTAAG 59.580 50.000 0.00 0.00 0.00 1.85
670 864 3.334691 CATCCGACAAACCAGCTTAAGA 58.665 45.455 6.67 0.00 0.00 2.10
671 865 3.478857 TCCGACAAACCAGCTTAAGAA 57.521 42.857 6.67 0.00 0.00 2.52
675 869 4.083802 CCGACAAACCAGCTTAAGAAGAAG 60.084 45.833 6.67 0.00 0.00 2.85
696 890 1.156736 AAAAATCAGTCGTCAGGGCG 58.843 50.000 0.00 0.00 0.00 6.13
698 892 0.670546 AAATCAGTCGTCAGGGCGTG 60.671 55.000 0.00 0.00 0.00 5.34
699 893 1.532604 AATCAGTCGTCAGGGCGTGA 61.533 55.000 5.66 5.66 0.00 4.35
700 894 1.938657 ATCAGTCGTCAGGGCGTGAG 61.939 60.000 10.61 5.34 35.13 3.51
834 1031 3.329542 AATCGTGTGGCGCCCATCT 62.330 57.895 26.77 7.41 41.07 2.90
928 1126 0.248743 CCTCGCGGTCGTTATTAGCA 60.249 55.000 6.13 0.00 36.96 3.49
931 1129 0.782384 CGCGGTCGTTATTAGCATCC 59.218 55.000 0.00 0.00 0.00 3.51
933 1131 0.782384 CGGTCGTTATTAGCATCCGC 59.218 55.000 0.00 0.00 38.99 5.54
1232 1430 6.248569 TCTAAGAAGAGTTGTTTTCCAGGT 57.751 37.500 0.00 0.00 0.00 4.00
1310 1508 1.731613 CGACAACGCCGAGCTTACA 60.732 57.895 0.00 0.00 0.00 2.41
1370 1572 3.998341 GGCACGTTGGAGTTCATTAGTTA 59.002 43.478 0.00 0.00 0.00 2.24
1374 1576 5.872617 CACGTTGGAGTTCATTAGTTATGGA 59.127 40.000 0.00 0.00 34.85 3.41
1399 1601 0.319555 TGACTGACACCTAGTTGCGC 60.320 55.000 0.00 0.00 0.00 6.09
1400 1602 1.344942 GACTGACACCTAGTTGCGCG 61.345 60.000 0.00 0.00 0.00 6.86
1403 1605 1.666872 GACACCTAGTTGCGCGGTT 60.667 57.895 8.83 0.00 0.00 4.44
1404 1606 1.897398 GACACCTAGTTGCGCGGTTG 61.897 60.000 8.83 1.47 0.00 3.77
1405 1607 3.047877 ACCTAGTTGCGCGGTTGC 61.048 61.111 8.83 0.00 37.91 4.17
1423 1625 4.314440 GCCGCACAGTGGGACAGA 62.314 66.667 18.96 0.00 41.80 3.41
1528 1730 2.726832 AGACGCTTACCTCAACTGTC 57.273 50.000 0.00 0.00 0.00 3.51
1532 1734 2.288273 ACGCTTACCTCAACTGTCTGTC 60.288 50.000 0.00 0.00 0.00 3.51
1655 1857 1.303317 GGAGGTCGTTGGCATTGGT 60.303 57.895 0.00 0.00 0.00 3.67
1707 1912 5.011329 TCAACAGAACCTTACCGTGATAACT 59.989 40.000 0.00 0.00 0.00 2.24
1744 1949 2.483877 CTGCAACGTGCCTAAGATTGAA 59.516 45.455 7.38 0.00 44.23 2.69
1809 2014 0.035152 TGCCATTCTTCCATCGCTGT 60.035 50.000 0.00 0.00 0.00 4.40
1974 2184 5.976323 AGATTCTTAGATAAGGAGGGCTCT 58.024 41.667 0.00 0.00 34.14 4.09
1977 2187 5.933846 TCTTAGATAAGGAGGGCTCTAGT 57.066 43.478 0.00 0.00 34.14 2.57
2079 2289 3.679980 GCTAGACGATGAAGCACTTGAAA 59.320 43.478 0.00 0.00 36.26 2.69
2347 2573 2.734175 CGAAAGATGATTGTCGGTCGGA 60.734 50.000 0.00 0.00 0.00 4.55
2399 2625 3.181443 TGCTCCCTGATCTATGTCTACGA 60.181 47.826 0.00 0.00 0.00 3.43
2427 2653 0.517316 GTTCCTGTTGATCACGCCAC 59.483 55.000 0.00 0.00 0.00 5.01
2507 2733 2.080693 GGGCACACGATCATACAACAA 58.919 47.619 0.00 0.00 0.00 2.83
2509 2735 2.742053 GGCACACGATCATACAACAACT 59.258 45.455 0.00 0.00 0.00 3.16
2539 2765 3.074836 CCTAGGGTTTTTGTGAGGGGTAA 59.925 47.826 0.00 0.00 0.00 2.85
2601 2827 2.636893 AGGGGCTCATGTTATCAGCTAG 59.363 50.000 3.65 0.00 0.00 3.42
2655 2881 1.210478 CACGGGGAAGGAGATGATGTT 59.790 52.381 0.00 0.00 0.00 2.71
2704 2930 0.108138 ACTTTTCTCGGATCGGCCAG 60.108 55.000 2.24 0.00 35.94 4.85
2894 3121 4.693566 AGAAATTTGACGCGGATAAGACAA 59.306 37.500 12.47 2.31 0.00 3.18
2941 3168 2.434336 TCCGATGTGGATTAGGGTCTTG 59.566 50.000 0.00 0.00 43.74 3.02
2969 3196 2.366590 CCTCTCGGATCCATGAACATGA 59.633 50.000 13.41 0.00 41.20 3.07
3012 3239 3.575965 AAATTTCGATGAGTTGGTGGC 57.424 42.857 0.00 0.00 0.00 5.01
3015 3242 0.396435 TTCGATGAGTTGGTGGCTGT 59.604 50.000 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 9.919348 AAACAATTCATCGATTTTGAAAAACAG 57.081 25.926 15.67 4.04 36.72 3.16
448 629 7.388437 ACTGATTGGTTAACCGTTGACTATAA 58.612 34.615 19.65 5.51 39.43 0.98
451 632 5.217978 ACTGATTGGTTAACCGTTGACTA 57.782 39.130 19.65 0.00 39.43 2.59
463 644 3.576078 TGACCAGTTGACTGATTGGTT 57.424 42.857 12.54 0.00 46.59 3.67
468 649 1.878102 GCGGTTGACCAGTTGACTGAT 60.878 52.381 12.54 0.00 46.59 2.90
491 672 1.642037 CTCGAGGGCTGTTCGTACGA 61.642 60.000 15.28 15.28 39.05 3.43
640 834 2.151202 GTTTGTCGGATGGCTTTCAGA 58.849 47.619 0.00 0.00 0.00 3.27
641 835 1.200020 GGTTTGTCGGATGGCTTTCAG 59.800 52.381 0.00 0.00 0.00 3.02
642 836 1.243902 GGTTTGTCGGATGGCTTTCA 58.756 50.000 0.00 0.00 0.00 2.69
643 837 1.200020 CTGGTTTGTCGGATGGCTTTC 59.800 52.381 0.00 0.00 0.00 2.62
644 838 1.247567 CTGGTTTGTCGGATGGCTTT 58.752 50.000 0.00 0.00 0.00 3.51
645 839 1.244019 GCTGGTTTGTCGGATGGCTT 61.244 55.000 0.00 0.00 0.00 4.35
646 840 1.675641 GCTGGTTTGTCGGATGGCT 60.676 57.895 0.00 0.00 0.00 4.75
647 841 1.244019 AAGCTGGTTTGTCGGATGGC 61.244 55.000 0.00 0.00 0.00 4.40
648 842 2.107950 TAAGCTGGTTTGTCGGATGG 57.892 50.000 0.00 0.00 0.00 3.51
649 843 3.334691 TCTTAAGCTGGTTTGTCGGATG 58.665 45.455 0.00 0.00 0.00 3.51
650 844 3.695830 TCTTAAGCTGGTTTGTCGGAT 57.304 42.857 0.00 0.00 0.00 4.18
651 845 3.070446 TCTTCTTAAGCTGGTTTGTCGGA 59.930 43.478 0.00 0.00 0.00 4.55
652 846 3.399330 TCTTCTTAAGCTGGTTTGTCGG 58.601 45.455 0.00 0.00 0.00 4.79
653 847 4.750098 TCTTCTTCTTAAGCTGGTTTGTCG 59.250 41.667 0.00 0.00 0.00 4.35
654 848 6.619801 TTCTTCTTCTTAAGCTGGTTTGTC 57.380 37.500 0.00 0.00 0.00 3.18
655 849 7.404671 TTTTCTTCTTCTTAAGCTGGTTTGT 57.595 32.000 0.00 0.00 0.00 2.83
682 876 2.596338 TCACGCCCTGACGACTGA 60.596 61.111 0.00 0.00 36.70 3.41
705 902 3.833645 TCCGAAGACGCCCGATGG 61.834 66.667 0.00 0.00 38.29 3.51
718 915 3.006110 AGTTTCTGGTGTTTATCGTCCGA 59.994 43.478 0.00 0.00 0.00 4.55
834 1031 1.837439 AGATAAAGTGGGGATGCGTGA 59.163 47.619 0.00 0.00 0.00 4.35
917 1115 0.753867 TGGGCGGATGCTAATAACGA 59.246 50.000 0.00 0.00 42.25 3.85
1149 1347 0.683973 AGCCACACTCACAGAAGGAG 59.316 55.000 0.00 0.00 38.36 3.69
1202 1400 3.851098 ACAACTCTTCTTAGATCCACGC 58.149 45.455 0.00 0.00 0.00 5.34
1232 1430 0.734942 CGTTCCTCGCGAGCCTTTTA 60.735 55.000 30.49 7.91 0.00 1.52
1310 1508 2.910688 TCAAGCCGTTGAAGAACTCT 57.089 45.000 0.00 0.00 39.85 3.24
1370 1572 0.244994 GTGTCAGTCACTCGCTCCAT 59.755 55.000 0.00 0.00 43.13 3.41
1374 1576 1.169577 CTAGGTGTCAGTCACTCGCT 58.830 55.000 0.00 0.00 45.50 4.93
1406 1608 4.314440 TCTGTCCCACTGTGCGGC 62.314 66.667 1.29 0.00 0.00 6.53
1407 1609 2.047844 CTCTGTCCCACTGTGCGG 60.048 66.667 1.29 5.66 0.00 5.69
1408 1610 1.665916 CACTCTGTCCCACTGTGCG 60.666 63.158 1.29 0.00 0.00 5.34
1409 1611 1.302033 CCACTCTGTCCCACTGTGC 60.302 63.158 1.29 0.00 0.00 4.57
1410 1612 0.319728 CTCCACTCTGTCCCACTGTG 59.680 60.000 0.00 0.00 0.00 3.66
1411 1613 0.833834 CCTCCACTCTGTCCCACTGT 60.834 60.000 0.00 0.00 0.00 3.55
1423 1625 1.585006 CGCGTACTTGTCCTCCACT 59.415 57.895 0.00 0.00 0.00 4.00
1556 1758 0.824109 TCAGCTACCCCATCAACTCG 59.176 55.000 0.00 0.00 0.00 4.18
1655 1857 3.118519 GGATCTTTCTTACCCCGCTGTAA 60.119 47.826 0.00 0.00 0.00 2.41
1744 1949 9.479549 AATTAATGACCAGATTGACCAGTAAAT 57.520 29.630 0.00 0.00 0.00 1.40
1809 2014 9.762933 CAAAATGGGAAACTCTTAGAAAATTGA 57.237 29.630 0.00 0.00 0.00 2.57
1974 2184 7.265647 TCCATTGAAATTGTTTGAACGACTA 57.734 32.000 0.00 0.00 0.00 2.59
1977 2187 8.333908 CAAAATCCATTGAAATTGTTTGAACGA 58.666 29.630 0.00 0.00 31.84 3.85
2079 2289 1.004044 CTCTCAACTGGGATGCACCTT 59.996 52.381 0.00 0.00 38.98 3.50
2083 2293 1.339438 GCTTCTCTCAACTGGGATGCA 60.339 52.381 0.00 0.00 0.00 3.96
2092 2302 5.050490 TGAGTACTTTGTGCTTCTCTCAAC 58.950 41.667 0.00 0.00 0.00 3.18
2347 2573 1.202770 GGCGGCAATAGAACCCTATGT 60.203 52.381 3.07 0.00 35.84 2.29
2399 2625 0.396435 TCAACAGGAACGCCTCACAT 59.604 50.000 0.00 0.00 44.80 3.21
2427 2653 1.738099 CGGGTGAAAGAGAGGTGCG 60.738 63.158 0.00 0.00 0.00 5.34
2507 2733 4.912133 ACAAAAACCCTAGGGAAGAGTAGT 59.088 41.667 35.38 18.81 38.96 2.73
2509 2735 4.909088 TCACAAAAACCCTAGGGAAGAGTA 59.091 41.667 35.38 9.41 38.96 2.59
2601 2827 0.689412 CTTCACTCCCCTCCTCTCCC 60.689 65.000 0.00 0.00 0.00 4.30
2655 2881 4.833495 TGGGCATCGGGATCCCCA 62.833 66.667 25.73 13.92 46.38 4.96
2704 2930 2.813179 CTACCACCGAAGCATGCGC 61.813 63.158 13.01 0.00 34.03 6.09
2741 2967 3.595190 TCATCTCTACCCCTTGATCGA 57.405 47.619 0.00 0.00 0.00 3.59
2797 3024 3.636231 CACCCCAACTCCTGCCGA 61.636 66.667 0.00 0.00 0.00 5.54
2969 3196 1.003355 CAATGAGCTCACCCGTGGT 60.003 57.895 20.97 0.00 35.62 4.16
3012 3239 4.906065 CCATATGGTCAAACATCCACAG 57.094 45.455 14.09 0.00 36.50 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.