>input_sequence_61850
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-----------------------------------------------------------------------------ATG
GCCCCGACCGTCGCCTCCCCAGCCACGGGCGCCGTCCCCTCGCCGATCGCGAGCGACCTCGGGAAGGCCGCGCGCTCCGT
CGGGCTCGGGCTCCCCGCGCTGCCGCCGCTGCCCGGCCTCGCGTCCCACGGCCAGCCCCGCGTCGCCTCCTTCTGTGAGT
GTGGCTTTGAGAACTTGCGCGTGCGTGCAGCGGCATGGGGCGTGGATCTAAGAAGAGTTGTTTTCCAGGTAAAAGGCTCG
CGAGGAACGTGGTGTCAATGGCCGCCGGTGAGCCGGCCGCGCCGCTGGCCGACAACGCCGAGCTTACAGAGTTCTTCAAC
GGCTTGAAACAAGAGGTACGTAC----GTGGCACGTTGGAGTTCATTAGTTATGGAGCGAGTGACTGACACCTAGTTGCG
CGGTTGCGCCGCACAGTGGGACAGAGTGGAGGACAAGTACGCGGTGACCACGCTCGCCGTCGCCGCCACGCTCGGCATGT
GGAGCGCCGGCGGAGTAGTATCGGTACTGAAGACGCTTACCTCAACTGTCTGTCGAACAAGTTGTTTAAAAAATCACCGA
GTTGATGGGGTAGCTGAAGGTGATTTTGGTGTTAACCTTGCAGGCAATCGACAGGCTCCCCGTGGTTCCAGGTCTCATGG
AGGTCGTTGGCATTGGTTACAGCGGGGTAAGAAAGATCCACAGCTCAACAGAACCT---TACCGTGATAACTTTTGCTAT
TCGCAAACTGCAACGTGCCTAAGATTGAATTTACTGGTCAATCTGGTCATTAATTTGATCATGCTGTACAAGTCTGCCAT
TCTTCCATCGCTGTCAATTTTC----TAAGAGTTTCCCATTTTGATCCGTTCTTCTGAATTTCTAATACATGCAGTGGTT
TGCGTACAAGAACCTGCTATTCAAGCCCGACAGGTATTGAAACACAGCCTTTGTACCGAACCTGCAAAATGCTACTATAA
GATTCTT-AGATAAGGAGGGCTCTAGTCGTTCAAACAATTTCAATGGATTTTGCAGGAAAGCGTTCTTCGCTAAGGTCAG
GAACATTTACGAGGATATAATCAGCGGCTAG-------------------------------------------------
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>chr1A_1_TraesCS1A01G200000
TTTCTAAATTTATGAACTCTTTTTTCAAAATCGATGAACTGTTTTTCAAAATCGATGAAT--------------------
-TGTTTTTCAAAATTGATGAATG--------------------TTTTTTAAAATTCGGTGAA-CTTATTTCAAAATTGAT
GAACTCTTTT-TCAAAACCGATGAAATCTTTTCACAATCCGTGAAC-TTTTTTTCAAAATGGATGAACTCTTTTTCAAAA
T---------------------T---------------------GATGGACTGTTTTTCAAAACCGATGTACTTTTTTTA
AAAATG-----------------------------------------------------------------GATGA----
-----------------GCTTTTTTAAAATTCGGTGAACTTATTTCAAAATCGATGAACTCTTTCCCAATTTGATGAACT
TTTTTCAATTTCTGTGAAC-TTTTTTC-AAATTTGATGATCTG--AAAAAATG-AATGAAGGTTTCCAAATCTGTGAACT
TTTTTGAAATCTCGATTTTTTTTCTTTTTTTATGAT-TTTTCTC-GGTTTTTGTTTTCAT-CTTTTTTTTATAGTCAACG
GTTAACCAATCAGTCAACTGGTCAACCGCGATCGTACGAACAGCCCTCGAGGCTCTCGATCCAGCGAGCGACCAGGCGAG
GCGAGTTTAGC-----------CGTGGTCGCCACATGGGCCGGCCCACGATTCGGCGGCTGTGAGCGCCAGCTCCCTTAG
CTGGCGCCTGAAGCGCCAA--CTAGGAGCTCCCTCTGAAAGCCATCCGACAAACCAGCTTAAGAAGAAGAAAAAATCAGT
CGTCAGGGCGTGAGC---CCCCCATCGGGCGTCTTCGGACGATAAACACCAGAAACTCCCGATACCGCAGACGGAAACAT
CCAGGCCATACAGAGCCCACCCCAAACCCCATCTTATCGTTCTTCCGCGCGCAATCGTGTGGCGCCCATCTCACGCATCC
CCACTTTATCTTTGCGCGCCTGAACCCGGCCG-TCCCTAACCTCCCGCAGGACGCCGTCCCGACGACCTCGCGGTCGTTA
TTAGCATCCGCCCAACGCGCTTAACGCGCAAGTGGTGGTGGTGGTGAGGCGTACACTGACCGAAGGCATCGATCTCCATG
GCCCCGACCGTCGCCTCCCCAGCCACGGGCGCCGTCCCCTCGCCGATCGCGAGCGACCTCGGGAAGGCCGCGCGCTCCGT
CGGGCTCGGGCTCCCCGCGCTGCCGCCGCTGCCCGGCCTCGCGTCCCACGGCCAGCCCCGCGTCGCCTCCTTCTGTGAGT
GTGGCTTTGAGAACTTGCGCGTGCGTGCAGCGGCATGGGGCGTGGATCTAAGAAGAGTTGTTTTCCAGGTAAAAGGCTCG
CGAGGAACGTGGTGTCAATGGCCGCCGGTGAGCCGGCCGCGCCGCTGGCCGACAACGCCGAGCTTACAGAGTTCTTCAAC
GGCTTGAAACAAGAGGTACGTAC----GTGGCACGTTGGAGTTCATTAGTTATGGAGCGAGTGACTGACACCTAGTTGCG
CGGTTGCGCCGCACAGTGGGACAGAGTGGAGGACAAGTACGCGGTGACCACGCTCGCCGTCGCCGCCACGCTCGGCATGT
GGAGCGCCGGCGGAGTAGTATCGGTACTGAAGACGCTTACCTCAACTGTCTGTCGAACAAGTTGTTTAAAAAATCACCGA
GTTGATGGGGTAGCTGAAGGTGATTTTGGTGTTAACCTTGCAGGCAATCGACAGGCTCCCCGTGGTTCCAGGTCTCATGG
AGGTCGTTGGCATTGGTTACAGCGGGGTAAGAAAGATCCACAGCTCAACAGAACCT---TACCGTGATAACTTTTGCTAT
TCGCAAACTGCAACGTGCCTAAGATTGAATTTACTGGTCAATCTGGTCATTAATTTGATCATGCTGTACAAGTCTGCCAT
TCTTCCATCGCTGTCAATTTTC----TAAGAGTTTCCCATTTTGATCCGTTCTTCTGAATTTCTAATACATGCAGTGGTT
TGCGTACAAGAACCTGCTATTCAAGCCCGACAGGTATTGAAACACAGCCTTTGTACCGAACCTGCAAAATGCTACTATAA
GATTCTT-AGATAAGGAGGGCTCTAGTCGTTCAAACAATTTCAATGGATTTTGCAGGAAAGCGTTCTTCGCTAAGGTCAG
GAACATTTACGAGGATATAATCAGCGGCTAGACGATGAAGCACTTGAAAAGGTGCATCCCAGTTGAGAGAAGCACAAAGT
ACTCAAAACGGAGACGTGCAATTACTGTAT----ATCTGTACTATATATTTGAGCATAGCATCTAATATAATCCTTACTC
AATTGTATATCTAAATAAGTTGGACATATTGACGCAAAAAACTTTTGATGTGTTTAGCCACCATCTCCCAGAATTTTCAA
A-GGTAATTTTGCCCTTGCCATTAATTGGTTGCATATAAAATTAATAGCACGGTCCGTTCCGAAAGATGATTGT------
-----CGGTCGGACATAGGGTTCTATTGCCGCCAGCGCACCCTGCTCCCTGATCTATGTCTACGATGTGAGGCGTTCCTG
TTGATCACGCCACGCACCTCTCTTTCACCCGTTCAAATCCAATCCACAAACGTCTTTCGTGTACACTAGCTAGGGCACAC
GATCATACAACAACTACTCTTCCCTAGGGTTTTTGTGAGGGGTAACAGAGCAGGGGATGCATCGAGGATGTCAAAGGCAT
GATGAAGGGGCTCATGTTATCAGCTAGGGAGAGGAGGGGAGTGAAGGTAGGGACAACATACACGGGGAAGGAGATGATGT
TGGGGATCCCGATGCCCAGGCAGCGGGCATACTTTTCTCGGATCGGCCAGCGCATGCTTCGGTGGTAGGGCAAACACTAT
ATGGTGT-CGATCAAGGGGTAGAGATGAAAGGAGCTTGTAGATAATATCTTTTTATACACTTTTCGGCAGGAGTTGGGGT
GAAGGAGCGCACTGGAAGAAGGGCCATGGGGGTTTGATAAGGAGCTTTTGGTAATGGAGAAATTTGACGCGGATAAGACA
ATTGAGGAGTATGACTTCAATATAATTCCGATGTGGATTAGGGTCTTGGGTCTGCCTCTCGGATCCATGAACATGACCAC
GGGTGAGCTCATTGCGCAAAATTTCGATGAGTTGGTGGCTGTGGATGTTTGACCATATGGTACATTGATAGATAAAGTAT
ATGAGGAT
>chr3A_1
TTTCTAAATTAATGAACTCT---------------------TTTTTCAAAATTGATGAACTCTTTTTCAAAATCGATGAA
CTGTTTTTCAAAATCAATGAACG--------------------TTCTTTTAAATTCGGTGAA-CTTATTTCAAAATTGAT
GAACTCTTTT-TCAAAACCAATGAAATCTTTTCACAATCCGTGAAC-TTTTTTTCAAAATGGATGAACTCTTTTTCAAAA
TTGATGAACTGTTTTTCAAAATC---------------------GATGAAC----------------------TTTTTTC
AAAATG-----------------------------------------------------------------GATGA----
-----------------GCTTTTTTAAAATTCGGTGAACTTATTTCAAAATCGATGAACTCTTTCCCAATTTGATGAACT
TTTTTCAA----------------------ATTTGATGATCTG--AAAAAATG-AATGAAGGTCTCCAAATCTGTAAACT
TTTTTGAAATCTCGATTTTTTTTCTTTTTTTATGATATTTT-TC-ATTTTTCGTTTTCAT-CTTTTTTCTAAAGTCAACG
GTTGACCAGTCAGTCAACTGGTCAACCGTGACCGTACGAACAGCCCTCGAGGCTCTCGATCCAGCGAGCAACCAGGCGAG
GCAAGTTTAGC-----------CGTGGTCGCCACATGGGCCGGCCCACGATTTGGCGGCTGTGAGCGCCAGCTCCCTTAG
CTGGCGCCTAAAGCGCCAC--CTAGGAGCTCCC-----------------------------------------------
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>chr4A_1
TTTCTAAATCGATGAACTTT---------------------TTTTTCTAAATTGATAAACTCTTTTTCAAAATTGATGAA
CTGTTTTTGGAAATCGATGAACT--------------------TCTTATAAAATTCGGTGAA-CTTATTTCAAAATTGAT
GATCTGTTTT-TCAAAACTGATGAAATATTTTCACAATCCGTGAAC-TTTTTTTCAAAATGGATGAACTCTTTTTCAAAA
T---------------------C---------------------GATGAAC----------------------TTTTTTT
CAAA-------------------------------------------ATCGATGAA-T-TTTTTCAAAATGGATGA----
-----------------A-CTTTTTAAAATTCGGTGAACTTATTTCAAAATCGATGAACTCTTCTCCAATTTGATGAAA-
TTTTTCAATTTATGTGAAC-TTTTTTCCATATTTGATGATTTGAAAAAAAATG-AATGAAGGTTTCCAAATCTGTGAACT
TTTTTGAAATCTTGATTTTTTTTCTTTTTTTATGAT-TTTT-TC-GTTTTAAGTTTTCAT-CTTTTTTCTAAAGTCAAAG
GTTGACCAGTCAGTCAATTGGTCAACCGCGACCGTACGAACAGCCATCGAGGCTCTCGATCGAGCGAGCGACCAGGCGAG
ACGAGTTTAGC-----------CGTGGTCGCCACATGGGCCGGCCCACGATTCGGCGGCAGTGAGCGCCAGCTCCCTTAG
CTGGCGCCTGAAGCGCCAA--CTAGGAGTTCCC-----------------------------------------------
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>chr4A_1
TTTCTAAATTAATGAATTCT---------------------TTTTTCAAAATTGATGAACTCTTTTTCAAAATCGATGAA
CTGTTTTTCAAAATTGATGAACG--------------------TTTTTTTAAATTCGGTGAA-CTTATTTCAAAATTGGT
GAACTCTTTT-TCAAAACCGATGAAATCTTTTCACAATCCGTGAACTTTTTTTTCAAAATGGATGAACTCTTTTTCAAAA
T---------------------C---------------------GATGAAC----------------------TTTTTTC
AAAATG-----------------------------------------------------------------GATGA----
-----------------GCTTTTTTAAAATTCGATGAACTTATTTCAAAATCGATGAACTCTTTCCCAATTTGATGAACT
TTTTTCAATTTCTGTGAAC-TTTTTTC-AAATTTGATGATTTG--AAAAAATG-AATGAAGGTTTCCAAATCTGTAAACT
TTTTTGAAATCTCAATTTT-TTTCTTTTTTTATGATTTTTT-TC-GTTTTTCGTTTTCAT-TTTCTTTCTAAAGTCAACG
GTTGACCAGTCAGTCAACTGGTCAACCGCGACCGTACGAACAGCCCTCGAGGCTCTCGATCCAGCAAGCGACCAGGCGAG
GCGAGTTTAGC-----------CATGGTCACCACATGGGCCGGTCCACGATTCGGCGGCTGTGAGCGCCAGCTCTCTTAG
CTGACGCCTGAAGCGCCACAACTAGGAGCTCCC-----------------------------------------------
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>chr3D_11
----------TATGAACTCTTTCA------------------TTTACAAAATCGGTGAACTTTCTTTCACAATCGATGAA
CT-TTTTTCAAGATCGATGAACT--------------------TTTTTCTAAAT-CGATGAT-TTTTTTTCCAAATTGAT
GAACTCTTTT-TCAAAACCGATGAACTCTTTTCACAATTCATGAAC-TTTTTTTCAAGATGGATGAACTATTTTTCAAAA
T---------------------C---------------------GATGAAC----------------------TTTTTTC
AAAATC-----------------------------------------------------------------GATGAACTG
TTTTTAAAAATTGATGAT-TTTTTTTAAATTCGGTGAACTTATTTCAAAATCGATGAACTCTTTCCCAATTTGATGAACT
TTTTTCAATTTTTGTGAAC-TTTTTTCCAAATTTGATGATTT---AAAAAATG-GATGAAGGTTTCCAAATCTGTGAACT
TTTTTGAAATCTCGATTTTTTTTCTTTTTTAGTGAT-TTTT-TC-GTTTTAAGTTTGCAT-CTTTTTTCTAAAGTCAACG
ATTGACCAGTCTGTCAACTGGTCAACCGCGACCGTACAAACAGCCCTGGAGGCTCTCGATCGAGCGAGGGACCAGGCGGG
GCGAGTTTAGCGAGCGACTGGGCGTGGTCGCCACATGGGCCGGCCCACGATTCGGCGGCTGTGAGCGCCAGCTCCCTTAG
CTGGTGCCTGAAGCGCCAA--CTAGGAGCTCCC-----------------------------------------------
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>chrUn_11
----------TATGAACTCTTTCA------------------TTTACAAAATCGGTGAACTTTCTTTCACAATCGATGAA
CT-TTTTTCAAGATCGATGAACT--------------------TTTTTCTAAAT-CGATGAT-TTTTTTTCCAAATTGAT
GAACTCTTTT-TCAAAACCGATGAACTCTTTTCACAATTCATGAAC-TTTTTCTCAAGATGGATGAACTATTTTTCAAAA
T---------------------C---------------------GATGAAC----------------------TTTTTTC
AAAATCGATGAACTGTTTTTA--AAAATTGATGA----------------------------------------------
-------------------TTTTTTTAAATTCGGTGAACTTATTTCAAAATCGATGAACTCTTTCCCAATTTGATGAACT
TTTTTCAATTTTTGTGAAC-TTTTTTCCAAATTTGATGATTT---AAAAAATG-GATGAAGGTTTCCAAATCTGTGAACT
TTTTTGATTTCTCGATTTTTTTTCTTTTTTAGTGAT-TTTT-TT-GTTTTAAGTTTGCAT-CTTTTTTCTAAAGTCAACG
ATTGACCAGTCTGTCAACTGGTCAACCGCGACCGTACAAACAGCCCTGGAGGCTCTCGATCGAGCGAGGGACCAGGCGGG
GCGAGTTTAGCGAGCGACTGGGCGTGGTCGCCACATGGGCCGGCCCACGATTCGGCGGCTGTGAGCGCCAGCTCCCTTAG
CCGGTGCCTGAAGCGCCAA--CTAGGAGCTCCC-----------------------------------------------
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>chr3A_12
-----------ATGAACTCT---------------------TTTTTCAAAATTGATGAACTCTTTTTCAAAATCGACGAA
CTGTTTTTCAAAATCAATGAACG--------------------TTTTTTTAAATTCAATGAA-CTTATTTCAAAACCGAT
GAACTCTTTT-TCAAAACCGATGAAATCTTTTCACAATCCGTGAAC-TTTTTTTCAAAATGGATGAACTCTTCTTCAAAA
T---------------------C---------------------GATGAAC----------------------TGTTTTT
CAAA-------------------------------------------ATCGATGAACT-TTTTTCAAAATGGATGA----
-----------------GCTTTTTTAAAATTCGGTGAACTTATTTCAAAATCGCTGAACTCTTTCCCAATTTGATGAACT
TTTTTCAATTTATGTGAAC-TTTTTTC-AAATTTGATGATTTG--AAAAAATG-AATGAAGGTTTCCAAATCTGTGAACT
TTTTTGAAATCTCGATTTTTTTTCTTTTTTTATGAT-TTTT-TC-TTTTTTCGTTTTCAT-C-TTTTTCTAAAGTCAATG
GTTGACCAGTCAGTCAACTGGTCAACCGCAACCGTACGAACAGCCCTCGAGGCTCTCGATCCAGCGAGCGACCAGGCGAG
GCGAGTTTAGC-----------CGTGGTCGCCACATGGGCCGGCCCACGATTCGGCGGCTGTGAGCGCCAGCTCCCTTAG
CTGGCGCCTGAAGCGCCAA--CTAGGAGCTCCC-----------------------------------------------
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>chr4A_12
ATGAA---------------------------------------------------------------------------
CTCTTTTTCAAGATCGATGAACT--------------------TTTTTCTAAAT-CGATGAA-TTTTTTTCTAAATTGAT
GAACTTTTTT-TCAAAACCAATGAACTCTTTTCACAATCCATGAAC-TTTTTTTCAAAATTGATGAACTCTTTTTCAAAA
T---------------------C---------------------GATGAAC----------------------TTTTTTC
AAAATCAATGAACT--TTTTTTCAAAATTGATGAACTCCTTTTCAAAATCGATGAACTGTTTTGCAAAATTGATGA----
-----------------T-TTTTTTAAAATTCGGTGAACTTATTTCAAAATTGATGAACTCTTTCCCAATTTGATGAACT
TTTTTCAATTTTTGTGAAC-TTTTTTCCAAATTTGATGATTT---AAAAAATG-GATGTAGGTTTCCAAATTTGTGAACT
TTTTTGAAATCTCGATTTTTTTTCTTTTTTTGTGAT-TTTT-TT-GTTTTACGTTTTTAT-CTTTTTTCTAAAGTCAACG
GTTGATCAGTCAGTCAACTGGTCAACCGCGACCGTACGAACAGCCCTCGAGGCTCTCGATCGAGCGAGGGACCAGGCGGG
GCGAGGTTAGCCAGCGACTGGGCGTGGTCGCCACATGCGCCGGCCCATGATTCGGCGGCTGTGAGCGCCAGCTCCCTTAG
CTGGCGCCTGAAGCGCCAA--CTAGGAGCTCCC-----------------------------------------------
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>chr1B_13
TGAAC----------------------------------TCTTTTTCAAAATTGGTGAACTTTCTTTCACGATCGATGAA
CTCTTTTTCAAGATCGATGAAAT--------------------TTTTTCTAAAT-CGATGAACTTTTTTTCTAAATTGAT
GAACTCCTTT-TCAAAACCGATGAA------------------------------------------CTGTTTTTCAAAA
T---------------------C---------------------GATGAAC----------------------TTTTTTC
AAAATCGATGAACT--TTTTT--AAAATGGATGAACTCTTTTTCAAAATCGATGAACTGTTTTTCAAAATTGATGA----
-----------------ACTTTTTTTAAATTCGGTGAACTTATTTCATAATTGATGAACTCTTTCCCAATTTGATGAACT
TTTTTCATTTTTGTTAACTTTTTTTTCCAAATTTGATGATTT---AAAAAATTAGATGAAGGTTTCCAAATCTGTGAACT
ATTTTGAAATCTCG--TTTTTTTCCTTTTTTCTGAT-TTTT-TTCATTTTATGTTTTCATCTTTTTTTCTGAAGTCAACG
GTTGACCAGTCAGTCAACTGGTCAACCGCGACCGTACGAACAGCCCTCGAGGCTCTCGATCGAGCGAGGGACCAGGCGGG
GCGAGTTTAGCGAGCGACTGGGCGTGGTCGCCACATGGGTCGGCCCACGATTCGCCGCCTGTGAGCGCCAGCTCCCTTAG
CTGGCGCCTGAAGCGCCAGCT-----------------------------------------------------------
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>chr3A_13
TGAAC-------------------------------------------------------TTTCTTTCACAATCGAGGAA
CTCTTTTTCAAGATCAATGATCTTTTTTTCTAAATTGATGAACTTTTTTTAAATTCGGTGAA-CTTATTTCAAAATTGAT
GAACTCTTTT-TCAAAACCGATGAAATCTTTTCACAATCCATGAAC--TTTTTTCAAAATGGATGAACTCTTTTTCAAAA
T---------------------T---------------------GATGAAC----------------------TGTTTTT
CAAA-------------------------------------------ATCGATGAACT-TTTTTCAAAATGGATGA----
-----------------GCTTTTTTAAAATTCGGTGAACTTATTTCAAAATCGATGAACTCTTTCCCAATTTGATGAACT
TTTTTCAATTTCTGTGAAC-GTTTTTC-AAATTTGATGATCTG--AAAAAATG-AATGAAGGTTTCCAAATCTGTGAACT
TTTTTAAAATCTTGATTTTTTTTCCTTTTTTATGAT-TTTT-TTCGTTTTTCGTTTTCAT-CTTTTTTCTAAAGTCAACG
GTTGACCAGTCAGTCAACTGGTCAACCGCGACCGTACGAACAGCCCTCGAGGCTCTCGATCCAGCGAGCGACCAGGCGAG
GCGAGTTTAGC-----------CGTGGTCGCCACATGGGCCGGCCAACGATTCGGCCGCTGTGAGCGCCA----------
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>chr6B_19
------------------CTTTTTTCTAAATCGATGAA------------------------------------------
----------------------------------------------------------------TTTTTTCTAAATTGAT
GAACTCTTTT-TCAAAACCAATGATATCTTTTCACAATCCATGAAC-TGTTTTTCAAAATGGATGAACTCTTTTTCAAAA
T---------------------CGTTTAACTATTTTTCAAAATTGATGAAC----------------------TTTTTTC
AAAATCAATGAACT--TTTTTTCAAAATTGATGAACTCCTTTTCAAAATTGATGAACTGTTTTGCAAAATTGATGA----
-----------------T-TTTTTTTAAATTCGGTGAACTTATTTCAAAATTGATGAACTCTTTCCCAATTTGATGAACT
TTTTTCAATTTTTGTGAAC-TTTTTTCCAAATTTGATGATTT---AAAAAATG-GATGTAGGTTTCCAAATTTGTGAACT
TTTTTGAAATCTCGATTTTTT--CTTTTTTTGTGAT-ATTT-TT-GTTTTACGTTTTTATCTTTTTTTCTAAAGTCAACG
GTTGACCAGTCAGTCAACTGGTCAACCGCGACCGTACGAACAGCCCTCGAGGCTCTCGATCGAGCGAGGGACCAGGCGGG
GCGAGGTTAGCCAGCGACTGGGCGTGGTCGCCACATGGGCCGGCCCATGATTCGGCGGCTGTGAGCGCCAGCTCCCTTAG
CTGGCGCCTGAAGCGCCAA--CTAGGAGCTCCC-----------------------------------------------
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>chr4A_21
--------------------TTTTTCTAAATCGATGAAGTCTTTTTCTATATTGATGAACTCTTTTTCAAAATCGATGAA
CTTTTTTTCAAGATCGATGAACT--------------------TTTTTCTAAAT-CAAAGAACTTTTTTTCTAAATTGAT
GAACTCTTTTTTCAAAACCGATGAACTCTTTTCACAATTCATGAAT-TTTTTAA-AAAATGGATGAATTGTTTTTCAAAA
T---------------------C---------------------GATGAAC----------------------TTTTTTC
AAAATCGATGAACT--TTTTG--AAAATGGATGAACTCTTTTTCAAAATCGATGAACTGTTTTTCA--------------
-------------------------------------------------------------------AAATTGATGAACT
TTTTTTAATTTTTGTGACC-TTTTTTACAAATTTGATGATTT---AAAAAAAG-GATGAAGGTTTCCAAATCTGTGAACT
TTTTTGAAATGTCGATTTTTTTTCTTTTTTGTGA--------TT-TTTTTAAGTTTTCAT-TTTTTTTCTAAAGTCAACG
GTTGACCAGTCAGTCAACTGGTCAACCGCGACCGTATGAACAGCCCTCGAGGCTCTCGATCCAGCGAGGGAGCAGGC-GG
GCGAGTTTAGCGAGCGAC-GGGCGTGGTCGCCACATGGGCCGGCCCACGATTCGGCGGCTGTGAGCGCCAGCTGCCTTAG
CTGGCGCCTGAAGCGCCAA--CTAGGAGCCCCTC----------------------------------------------
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>chrUn_43
------------------------------------------TTTACAAAATCGGTGAACTTTCTTTCACAATCGATGAA
C-TTTTTTCAAGATCGATGAACT--------------------TTTTTCTAAAT-CGATGAT-TTTTTTTCCAAATTGAT
GAACTCTTTT-TCAAAACCGATGAACTCTTTTCACAATTCATGAAC-TTTTTTTCAAGATGGATGAACTATTTTTCAAAA
T---------------------C---------------------GATGAAC----------------------TGTTTTT
AAAA----------------------------------------------------------------ATTGATGA----
-----------------T-TTTTTTTAAATTCGGTGAACTTATTTCAAAATCGATGAACTCTTTCCCAATTTGATGAACT
TTTTTCAATTTTTGTGAAC-TTTTTTCCAAATTTGATGATTT---AAAAAATG-GATGAAGGTTTCCAAATCTGTGAACT
TTTTTGAAATCTCGATTTTTTTTCTTTTTTAGTGAT-TTTT-TT-GTTTTAAGTTTGCAT-CTTTTTTCTAAAGTCAACG
ATTGACCAGTCTGTCAACTGGTCAACCGCGACCGTACAAACAGCCCTGGAGGCTCTCGATCGAGCGAGGGACCAGGCGGG
GCGAGTTTAGCGAGCGACTGGGCGTGGTCGCCACATGGGCCGGCCCACGATTCGGCGGCTGTGAGCGCCAGCTCCCTTAG
CTGGTGCCTGAAGCGCCAA--CTAGGAGCTCCC-----------------------------------------------
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>chr1B_673
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-----------------------------------------------------------------GAAAAAAAAAACAGT
CGTCGGGGCCTCCCTAAGCCCACATCGGGCGTCTGCGGACGATAAACACCAGAAACTCCAGATACCGCAGACGGAAACAT
CCAGGCCATACAGAGCCCACCCCAAACCCCATCTTATCGTTCTTCCGCGCGCAATCGTGTGGCGCCCATC-CACGCATCC
CCACTTTATCTTTGCGCGCCTGAGCCCGGCCGCTCCCTAACCTCCCGCAGGACGCCGTCCCAACAACCTCGCGGCCGTTA
TTAGCCTCTGACCAACGCGCTTAACGCGCAAGTGGTGGTGGTGGTGAGGCGTACACTGACCGAAGACATCGATATCCATG
GCCCCGACCGTCATCTCCCCAGCCACGGGCGCCGTCGCCTCGCCCATCGCGAGCGACCTCGGGAAGGCCGCGCGCTCCGT
CGGACTCGGGCTCCCCGCGCTGCCGCCGCTGCCCGGCCTCGCATCCCACGGCCAGCCCCGCGTCGCGTCCTTTTGTGAGT
GTGGCTTTGAGAACTTGCGCGTGC----AGCGGCATGGGACGTGGATCTAAGAAGAGTTGTTTTCCAGGCAAAAGGCTCG
CGAGGAACGTGGTGTCAATGGCCGCCGGTGAGCCGGCCGCGCCGCTGGCCGACAACGCCGAGCTTACCGAGTTCTTCAAC
TCCTTGAAACAAGAGGTACGTACATATGTGGCACATTGGAGTTCATTGGTTGTGGCGCGAGTGACTGACACCTCGTCGCG
GTGCG--------CAGTGGGACAGGGTGGAGGACAAGTACGCGGTGACCACGCTCGCCGTCGCCGCCACGCTCGGCATGT
GGAGCGCCGGCGGAGTAGTATCGGTACTGAAGACGCTTACCTCAACTGTTTGTGGAACAAGTTGTTTAAAAAATCACTGA
GTTGATGGGGTAGCTGAAGGTGATTTTGGTGTTGACCTTGCAGGCAATCGACAGGCTCCCCGTGGTTCCAGGTCTCATGG
AGGTCGTTGGCATTGGCTACAGCGGGGTAAGAAAGATCCACAGCTCAACAGAACCTCGATACCGTGATAACGTTTGCTAT
TCGCAAACTGCAACGTGCCTAAGATTGATTTTACTGGTTAATGTGGTCATCAATTTGATCATGCTGTACAAGTCTGCCAT
TCTTCCATCGCTGCCAATTTTCTAAGTAAGAGTTTCCCTTTTTGATCCGTTCTTCTGAATTTCTAATGCATGCAGTGGTT
TGCGTACAAGAACCTGCTATTCAAGCCCGACAGGTATTGAAACACAGCCTTTGTACCGAACCTGCAAAATGCTACAATAA
GATTCTT-AGATAAGGAGGGCTCCAGGCGTTCAAACAATTTTAATGGATTTTGCAGGAAAGCGTTCTTCGCTAAGGTCAG
GAACATTTACGAGGATATAATCAGCGGCTAGACGATGAAGCACTTGAAGAGGCACATCCCAATTGAGAGAAGCACAAAGT
ACTCAAAACGGAGACGTGCAATTACTGTATATCAATCTGTACTATATATTTGAGCATAGCATCTAATATAATCCTTACTA
AA-TGTACATCTAAATAAGTTGGACATATTGACGCAAAAAACTTTTGATGTCTTTAGCCACCATGTGCCAGAATGTTCAA
A-GGTAATTTTGCCCTTGCCAATAACTGGTTGC--ATAAAATTAATAGCACGGTCCGTTCCGAAAGATGATTGTTTCGTA
ATTGTCGGTTGGGCATAGGGTTCTATTGCGGCCAGCGCACCCTGCTCCTTCATCTATGTCTAAGGTGTGGGGCGTTCCTG
TTGATCACGCCATGTACCTCTCTTTCACCCGTTCAAATCCAATCCACAAACGTCTTTCGTGTACACTAGCTAGGGCACAC
AATCATACAACACCGACTCTTCCCTAGGGTTTTTGTGAGGGGTGGCAGAGCAGGGGATGCATCGAGGATGTCAAAGGCAT
GATGAAGGGGCTCATGTTATCAGCTACGGAGAGGAGGGGAGTGAATGTAGGGACAACATACACGGGGAAGGAGATGATGT
GGGGGATCCCAACGCCCAGGCAGCGGGCAAACTTTTCTCGGATCAGCCAACGCATGGTTCGGTGGTAGGGCAAATACTAT
ATGGTGCCCGATCAAGGGGTAGAGATGAAAGGAGCTTGTAGATAATATCTTTTTATACACTTCACGGCAGGAGTTGGTGT
GAAGGAGCGCACCGGAAGAAGGGCCATGGGGGTTTCATAAGGAGCTTTTGGTAATGGAGAAATTTGACGCGGATAAGACA
GTTGAGGAGTATGACTTCAATATAATTCCGATGTGGATTAGGGTCTTTGATCTGCGTCTCGGATCCATGAACATGCCCAC
GGGTGAGCTCATTGCGCAAAATTTTGATGAGTTGGTGGGTGCGGTTGTCTGACCATGTGGTACATTGATAGATAAAGTAT
ATGAGGAT
>chr1D_727
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------------------------------------------TAAACACCAGAAACTCCCGATACCGCAAACGGAAACAT
CCAGGCCATACAGAGCCCACCCCAAACCCCATCTTATCGTTCTTCCGCGCGCAATCGTGTGGCGCCCATCCCACGCATCC
CCACTTTATCTTTGCGCGCCCAAACCCGGCCGCTCCCTAACCTCCCGCAGGACGCCGTCCCACCGACCTCGAGGCCGTTA
TTAGCCTCGGACGAACGCGCTTAACGAGCAAGTGGTGGTGGAGGTGAGGCGTACACTGACCGAAGGCATCGATCTCCATG
GCCCCGACCGTCGCCTCCCCAGCCACGGGCGCCGTCGCCTCGCCCATCGCGAGCGACCTCGGGAAGGCCGCGCGCTCCGT
CGGGCTCGGGCTCCCCGCGCTGCCGCCGCTGCCCGGCCTCGCGTCCCACGGCCAGCCCCGCGTCGCGTCCTTCTGTGAGT
GTGGCTCTGAGAACTTGCGCGTGC----AGCGGCATGGGACGTGGATCTAAGAAGAGTTGTTTT-CAGGCAAAAGGCTAG
CGAGGAACGTGGTGTCAATGGCCGCCGGTGAGCCGGCGGCGCCGCTGGCCGACAACGCCGAGCTTACCGAGTTCTTCAAC
GGCTTGAAACAAGAGGTACGTAC----GTGGCACGTTGGAGTTCATTAGTTGTGGCGCGAGTGACTGACACCTCGTCACG
GCGTG--------CAGTGGGACAGGGTGGAGGACAAGTACGCGGTGACCACGCTTGCCGTCGCCGCCACCCTCGGCATGT
GGAGCGCCGGCGGAGTAGTATCGGTACTGAAGACGCTTACCTCAACTGTTTGTGGAACAAGTTGTTTAAAAAATCACTGA
GTTGATGGGGTAGCTGAAGGTGACTTTGGTGTTAACCTTGCAGGCAATCGACAGGCTCCCCGTGGTTCCAGGTCTCATGG
AGGTCGTTGGCATTGGCTACAGCGGGGTAAGAAAGATCCACAGCTCAACAGAACCTCGATACCGTGATAACGTTTGCTAT
TCGCAAAATGCAATGTGCCTAAGATTGATTTTACTGGTCAATCTGGTCATTAATTTGATCATGCTGTACAAGTCTGCCAT
TCTTCCATCGCTGCCAATTTTCT----AAGAGTTTCCCATTTTGATCCGTTCTTCTGAATTTCTAATACATGCAGTGGTT
TGCGTACAAGAACCTGCTATTCAAGCCCGACAGGTATTGAAACACAGCCTTTGTACCGAACCTGCAAAATGCTCCTATAA
GATTCTTTAGATAAGGAGGGCTCCAGGCGCTCAAAGAATTTCAATGGATTTTGCAGGAAAGCGTTCTTCGCCAAGGTCAG
GAACATTTACGAGGATATAATCAGCGGCTAGACGATGAAGCACTTGAAGAGGCGCATCCCAATTGAGAGAAGCACAAAGT
ACTCAAAACGGAGACGTGCAATTACTGTATAT----CTGTACTGTATATTTGAGCATAGCATCTAATATAATCCTTACTC
AA-TGTATATCTAAATAAGTTGGACATATTGACGCAAAAAACTTTTGATGTGTTTAGCCACCTTCTCCCAGAATTTTCAA
ACGGTAATTTTGCCCTTGCCATTAATTGGTTGCATATAAAATTAATAGCATGGTCCGTTCCGAAAGATGATTGTTCCGTA
ATTGTCGGTCGGGCATAGGGATCTATTGCCGCCAACGCACCCTGCTCCCTGATCTATGTCTACGGTGTGAGGCGTTCCTG
TTGATCACGCCATGCACCTCTCTTTCACCCGTTCAAATTCAATCCACAAACGTCTTTCGTGTACACTAGCTAGGGCACAT
GATCATACAACACCGACTCTTCCCTAGGGTTTTTGTGAGGGGTAGCAGAGCAGGGGATGCATCGAGGATGTCAAAGGCAT
CATGAAGGGGCTCATGTTATCAGCTAAGGAGAGGAGGGGAGTGAAGGTAGGGACAACATGCACGGGAAAGAAGATGATGT
GGGGGATCCCGACGCCCAGGCAGCGGGCTTACTTTTCTCAGATCGGTCAACGCATGCTTCGGTGGTAGGGAAAACACTAT
ATGGTGCCCGATCAAGGGGTGGGGATGAAAGGAGCTTGTAGATAATACCTTTTTATACACTTTCCGACAGGAGTTGGGGT
GAAGGAGCGCACTGGAAGAAGGGCCATGGGGGTTTGATAAGGAGCTTTTGGTAATGGGGAAATTTGACGCAGATAAAACA
GTTGAGGAGTATGACTTCAATATAATTCCGATGTGGATTAGGGTCTTCGGTCTGCCTCTCGGATCCATGAACATGCCCAC
GGGTGAGCTCATTGCGAAAAATTTCGATGAGTTGGTGGGTGCGGATGTTTGACCATATGGTACATTGATAGATAAAGTAT
ATGAGGAT
>SNPs
--------------------------S-----------S-S------------------S--------------------
---------------------S----------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------S--SSSSSSSSSSSSSSSSSSSSSS------S
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------S----S---------------------S--S--------
---S----S----------------------S------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S------S----
----S----S-SSSS------S------------S---------------------------------------------
----------------------------------------------------------------------S---------
-------------------------------------------------------------S------------S-----
-----S--S-S---------------------------------------------------------------------
------------------------------------S-------S-----------------------------------
------------------------------------------------------------------S-------------
------------------------SSSS-----------S-----------------------------S----------
-------------------------------------------------------------------S------------
---------------------------------------------------S---S-----------------S--S---
SS--SSSSSSSSS-----------S-------------------------------------------------------
-------------------------------------------------S---S-----------------------S--
--------------------------------------------------------------------------------
----------------S------------------------------------------------------S--------
----------------------------S---------------------------------------------------
-------------S------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------S--S-----------------------------------------------------
------------------------------------------------S---S--------S------------------
--------------------------------------------------------------------------------
--S-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------S---------------------------------------------------S---------------
------------S-------------------------------------------------------------------
------------S-S-----------------------------S-----------------------------------
--------------------------S-----------------------------------------------------
S-----------S------------------------------------S------------------------------
------S--------------------------------------------------------S----------------
--------------------------------------------------------------------------------
S----------------------------------------------S---------------------------S----
--------------------------------------S--S--------------------------------------
--------
>forward_848
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----------------------------CTCCCTCTGAAAGCCATCCG--------------------------------
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--------
>reverse_2625
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----------------------------------------------------------------ATGTGAGGCGTTCCTG
TTGA----------------------------------------------------------------------------
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--------
