AutoCloner

Multiple sequence alignment - TraesCS1A01G199300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1A01G199300	chr1A	100.000	2940	0	0	1	2940	358150459	358153398	0.000000e+00	5430.0
1	TraesCS1A01G199300	chr1A	94.788	2072	80	15	165	2221	358174095	358176153	0.000000e+00	3203.0
2	TraesCS1A01G199300	chr1D	94.380	1975	87	8	1	1971	286749061	286751015	0.000000e+00	3011.0
3	TraesCS1A01G199300	chr1D	76.370	584	103	26	2381	2938	413727502	413726928	6.200000e-72	281.0
4	TraesCS1A01G199300	chr1D	76.203	395	77	15	2547	2933	182669010	182668625	2.990000e-45	193.0
5	TraesCS1A01G199300	chr1B	94.409	1574	60	14	654	2213	389089427	389090986	0.000000e+00	2394.0
6	TraesCS1A01G199300	chr1B	95.756	1461	47	6	654	2105	389007215	389008669	0.000000e+00	2340.0
7	TraesCS1A01G199300	chr1B	93.991	699	33	5	2246	2937	389008668	389009364	0.000000e+00	1050.0
8	TraesCS1A01G199300	chr1B	91.099	573	46	5	1	570	388912329	388912899	0.000000e+00	771.0
9	TraesCS1A01G199300	chr1B	89.320	103	11	0	566	668	389001658	389001760	2.380000e-26	130.0
10	TraesCS1A01G199300	chr1B	73.090	301	62	10	3	284	550931077	550930777	4.040000e-14	89.8
11	TraesCS1A01G199300	chr4D	82.000	550	74	19	2308	2837	76838071	76837527	7.480000e-121	444.0
12	TraesCS1A01G199300	chr4A	82.227	512	69	17	2441	2940	31786227	31785726	3.500000e-114	422.0
13	TraesCS1A01G199300	chr4A	73.585	265	51	11	3	248	14679698	14679962	1.880000e-12	84.2
14	TraesCS1A01G199300	chr4A	82.418	91	15	1	194	283	355201475	355201385	8.740000e-11	78.7
15	TraesCS1A01G199300	chr4A	80.645	93	16	2	194	284	15433546	15433454	1.460000e-08	71.3
16	TraesCS1A01G199300	chr5B	78.324	549	92	20	2409	2940	206802572	206803110	2.180000e-86	329.0
17	TraesCS1A01G199300	chr5A	77.798	554	99	17	2404	2940	245434045	245433499	1.310000e-83	320.0
18	TraesCS1A01G199300	chr5A	86.364	154	18	3	2598	2748	540388282	540388129	6.520000e-37	165.0
19	TraesCS1A01G199300	chr3B	78.586	495	90	12	2455	2937	40143815	40144305	2.200000e-81	313.0
20	TraesCS1A01G199300	chr3B	77.143	105	24	0	1516	1620	25907468	25907572	8.800000e-06	62.1
21	TraesCS1A01G199300	chr3B	77.143	105	24	0	1516	1620	26043926	26044030	8.800000e-06	62.1
22	TraesCS1A01G199300	chr3B	82.090	67	12	0	1516	1582	26004022	26004088	1.140000e-04	58.4
23	TraesCS1A01G199300	chr3B	82.090	67	12	0	1516	1582	26191621	26191687	1.140000e-04	58.4
24	TraesCS1A01G199300	chr6B	81.734	323	56	3	2613	2933	600383602	600383923	1.740000e-67	267.0
25	TraesCS1A01G199300	chr7D	77.389	429	70	20	2518	2940	538691349	538690942	2.280000e-56	230.0
26	TraesCS1A01G199300	chr6D	77.451	408	73	15	2538	2940	60058695	60059088	2.950000e-55	226.0
27	TraesCS1A01G199300	chr6D	74.065	401	79	20	2547	2940	151595119	151594737	1.100000e-29	141.0
28	TraesCS1A01G199300	chr6D	88.571	70	4	4	180	248	25506239	25506305	6.750000e-12	82.4
29	TraesCS1A01G199300	chr7B	79.322	295	58	3	2648	2940	377320556	377320263	1.380000e-48	204.0
30	TraesCS1A01G199300	chr2B	86.842	76	9	1	174	248	27068888	27068963	1.880000e-12	84.2
31	TraesCS1A01G199300	chr3A	77.143	105	24	0	1516	1620	17433850	17433954	8.800000e-06	62.1

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1A01G199300	chr1A	358150459	358153398	2939	False	5430	5430	100.0000	1	2940	1	chr1A.!!$F1	2939
1	TraesCS1A01G199300	chr1A	358174095	358176153	2058	False	3203	3203	94.7880	165	2221	1	chr1A.!!$F2	2056
2	TraesCS1A01G199300	chr1D	286749061	286751015	1954	False	3011	3011	94.3800	1	1971	1	chr1D.!!$F1	1970
3	TraesCS1A01G199300	chr1D	413726928	413727502	574	True	281	281	76.3700	2381	2938	1	chr1D.!!$R2	557
4	TraesCS1A01G199300	chr1B	389089427	389090986	1559	False	2394	2394	94.4090	654	2213	1	chr1B.!!$F3	1559
5	TraesCS1A01G199300	chr1B	389007215	389009364	2149	False	1695	2340	94.8735	654	2937	2	chr1B.!!$F4	2283
6	TraesCS1A01G199300	chr1B	388912329	388912899	570	False	771	771	91.0990	1	570	1	chr1B.!!$F1	569
7	TraesCS1A01G199300	chr4D	76837527	76838071	544	True	444	444	82.0000	2308	2837	1	chr4D.!!$R1	529
8	TraesCS1A01G199300	chr4A	31785726	31786227	501	True	422	422	82.2270	2441	2940	1	chr4A.!!$R2	499
9	TraesCS1A01G199300	chr5B	206802572	206803110	538	False	329	329	78.3240	2409	2940	1	chr5B.!!$F1	531
10	TraesCS1A01G199300	chr5A	245433499	245434045	546	True	320	320	77.7980	2404	2940	1	chr5A.!!$R1	536

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
590	599	1.461559	GCCAAGATCAGCTGCTTCTT	58.538	50.0	19.94	19.94	0.0	2.52	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2240	2271	0.037303	CACCAGCCACCTCTGATTGT	59.963	55.0	0.0	0.0	36.19	2.71	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
32	33	5.163794	ACGTAGCCAAAAGTAACATGTATGC	60.164	40.000	0.00	0.00	0.00	3.14
83	84	4.886496	ACCTCACAGAGTAGGGTAAAAC	57.114	45.455	0.00	0.00	37.18	2.43
114	115	5.229052	CACACAATTGTAACCACACGAAAAG	59.771	40.000	11.53	0.00	33.30	2.27
154	155	2.289819	GGGAAGTCACATTTACCGGACA	60.290	50.000	9.46	0.00	32.79	4.02
156	157	4.383335	GGGAAGTCACATTTACCGGACATA	60.383	45.833	9.46	0.00	32.79	2.29
186	187	2.274437	CCCCTCGCATAATCGATGATG	58.726	52.381	17.31	17.31	37.82	3.07
294	295	4.009675	GCCTTCTTGGACATGTATCAACA	58.990	43.478	0.00	0.00	37.86	3.33
306	307	8.303876	GGACATGTATCAACAACCTTAAACAAT	58.696	33.333	0.00	0.00	39.58	2.71
357	358	2.999355	GTCATTCTCTTCAGCCTGTGTC	59.001	50.000	0.00	0.00	0.00	3.67
379	380	6.479001	TGTCAGTAGTGCTAGTTTTGAGTTTC	59.521	38.462	0.00	0.00	0.00	2.78
383	384	8.064814	CAGTAGTGCTAGTTTTGAGTTTCTTTC	58.935	37.037	0.00	0.00	0.00	2.62
428	432	5.104900	GGGTCTACAGAAAGGCATAGAGAAA	60.105	44.000	0.00	0.00	0.00	2.52
431	435	7.554476	GGTCTACAGAAAGGCATAGAGAAATTT	59.446	37.037	0.00	0.00	0.00	1.82
590	599	1.461559	GCCAAGATCAGCTGCTTCTT	58.538	50.000	19.94	19.94	0.00	2.52
601	610	1.882352	GCTGCTTCTTCGGAAAGGGAA	60.882	52.381	0.00	0.00	33.12	3.97
610	619	2.361230	GAAAGGGAACTGCGGGGG	60.361	66.667	0.00	0.00	42.68	5.40
641	653	5.705441	CCGGCCTGTTCATTGTATATGTAAT	59.295	40.000	0.00	0.00	0.00	1.89
643	655	7.255451	CCGGCCTGTTCATTGTATATGTAATTT	60.255	37.037	0.00	0.00	0.00	1.82
850	863	1.740297	TATGGCACGCCGTACAAATT	58.260	45.000	5.88	0.00	39.42	1.82
940	953	2.388735	TCATCACCGGCTGATCTAACT	58.611	47.619	14.28	0.00	37.53	2.24
941	954	2.101415	TCATCACCGGCTGATCTAACTG	59.899	50.000	14.28	6.63	37.53	3.16
967	980	2.168521	ACTGATTGATCCAATCCGACGT	59.831	45.455	14.77	0.00	46.65	4.34
968	981	3.383505	ACTGATTGATCCAATCCGACGTA	59.616	43.478	14.77	0.00	46.65	3.57
969	982	3.713288	TGATTGATCCAATCCGACGTAC	58.287	45.455	14.77	0.00	46.65	3.67
970	983	3.131400	TGATTGATCCAATCCGACGTACA	59.869	43.478	14.77	0.00	46.65	2.90
971	984	3.812156	TTGATCCAATCCGACGTACAT	57.188	42.857	0.00	0.00	0.00	2.29
1017	1031	1.309950	CCATGCCATCTTCTGCAGAG	58.690	55.000	17.43	11.30	41.46	3.35
1022	1036	1.654317	CCATCTTCTGCAGAGCTCAC	58.346	55.000	17.43	8.22	33.87	3.51
1429	1454	1.065928	CTACCAGATCCGGTGCGTC	59.934	63.158	11.10	0.00	40.39	5.19
1430	1455	2.663630	CTACCAGATCCGGTGCGTCG	62.664	65.000	11.10	0.00	40.39	5.12
1444	1469	3.450115	GTCGGAGCTACGGCCTGT	61.450	66.667	20.39	2.95	39.73	4.00
1805	1830	2.183555	CCTCGTACCAGGCGTTCC	59.816	66.667	0.00	0.00	0.00	3.62
1945	1970	2.678336	CGCCAACTTCAAATAGGAGTCC	59.322	50.000	0.00	0.00	0.00	3.85
2134	2162	4.322385	GGGGTTTGACGCACGCAC	62.322	66.667	0.00	0.00	32.03	5.34
2198	2228	6.389091	TGCAGATTGTATTGTGCCTAAAAAG	58.611	36.000	0.00	0.00	34.91	2.27
2200	2230	6.624423	CAGATTGTATTGTGCCTAAAAAGCT	58.376	36.000	0.00	0.00	0.00	3.74
2222	2253	9.626045	AAGCTTAGTTCAATTAAGAATTTTCCG	57.374	29.630	0.00	0.00	31.26	4.30
2223	2254	7.755373	AGCTTAGTTCAATTAAGAATTTTCCGC	59.245	33.333	3.91	0.00	31.26	5.54
2224	2255	7.253321	GCTTAGTTCAATTAAGAATTTTCCGCG	60.253	37.037	0.00	0.00	31.26	6.46
2225	2256	6.009115	AGTTCAATTAAGAATTTTCCGCGT	57.991	33.333	4.92	0.00	0.00	6.01
2226	2257	5.856455	AGTTCAATTAAGAATTTTCCGCGTG	59.144	36.000	4.92	0.00	0.00	5.34
2227	2258	4.162812	TCAATTAAGAATTTTCCGCGTGC	58.837	39.130	4.92	0.00	0.00	5.34
2228	2259	3.840890	ATTAAGAATTTTCCGCGTGCA	57.159	38.095	4.92	0.00	0.00	4.57
2229	2260	2.604969	TAAGAATTTTCCGCGTGCAC	57.395	45.000	6.82	6.82	0.00	4.57
2230	2261	0.385473	AAGAATTTTCCGCGTGCACG	60.385	50.000	34.01	34.01	43.27	5.34
2231	2262	1.082366	GAATTTTCCGCGTGCACGT	60.082	52.632	36.80	17.42	42.22	4.49
2232	2263	1.058057	GAATTTTCCGCGTGCACGTC	61.058	55.000	36.80	27.39	42.22	4.34
2233	2264	1.503818	AATTTTCCGCGTGCACGTCT	61.504	50.000	36.80	13.52	42.22	4.18
2234	2265	1.503818	ATTTTCCGCGTGCACGTCTT	61.504	50.000	36.80	14.67	42.22	3.01
2235	2266	1.707239	TTTTCCGCGTGCACGTCTTT	61.707	50.000	36.80	0.00	42.22	2.52
2236	2267	2.368131	TTTCCGCGTGCACGTCTTTG	62.368	55.000	36.80	21.80	42.22	2.77
2237	2268	3.636043	CCGCGTGCACGTCTTTGT	61.636	61.111	36.80	0.00	42.22	2.83
2238	2269	2.304401	CCGCGTGCACGTCTTTGTA	61.304	57.895	36.80	0.00	42.22	2.41
2239	2270	1.623081	CCGCGTGCACGTCTTTGTAT	61.623	55.000	36.80	0.00	42.22	2.29
2240	2271	0.986270	CGCGTGCACGTCTTTGTATA	59.014	50.000	36.80	0.00	42.22	1.47
2241	2272	1.266211	CGCGTGCACGTCTTTGTATAC	60.266	52.381	36.80	17.13	42.22	1.47
2242	2273	1.722464	GCGTGCACGTCTTTGTATACA	59.278	47.619	36.80	0.08	42.22	2.29
2243	2274	2.156117	GCGTGCACGTCTTTGTATACAA	59.844	45.455	36.80	14.35	42.22	2.41
2244	2275	3.181524	GCGTGCACGTCTTTGTATACAAT	60.182	43.478	36.80	0.98	42.22	2.71
2290	2321	3.697619	AGACTAAAGTTGGTACAGCCC	57.302	47.619	0.00	0.00	41.77	5.19
2314	2345	1.376683	CCAACTCCAATCGGCCGAA	60.377	57.895	34.66	15.30	0.00	4.30
2348	2379	5.619086	CGTTGGATTTGTCCGCTTTCTATTT	60.619	40.000	0.00	0.00	0.00	1.40
2407	2446	1.578206	GCTCTTTTCTGACCGGTGCC	61.578	60.000	14.63	0.00	0.00	5.01
2436	2477	2.293399	GGTAATCCATTTGATCCGCACC	59.707	50.000	0.00	0.00	31.61	5.01
2769	2834	1.066573	CCTCGAGCTCAACCAACTCAT	60.067	52.381	15.40	0.00	0.00	2.90
2784	2849	5.851693	ACCAACTCATCCTCATAATCCCATA	59.148	40.000	0.00	0.00	0.00	2.74

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
10	11	6.093495	TCAGCATACATGTTACTTTTGGCTAC	59.907	38.462	2.30	0.00	0.00	3.58
32	33	1.078918	TTGCCTCGCATCCACTCAG	60.079	57.895	0.00	0.00	38.76	3.35
61	62	4.262335	CGTTTTACCCTACTCTGTGAGGTT	60.262	45.833	0.00	0.00	33.35	3.50
83	84	1.446465	GTTACAATTGTGTGTTGCGCG	59.554	47.619	21.42	0.00	38.82	6.86
114	115	2.607187	CCGACACATGTTCTAGACCAC	58.393	52.381	0.00	0.00	0.00	4.16
154	155	2.966915	TGCGAGGGGTACCATTACTAT	58.033	47.619	15.35	0.00	44.85	2.12
156	157	1.802553	ATGCGAGGGGTACCATTACT	58.197	50.000	15.35	5.78	44.85	2.24
186	187	6.313744	AGTGACTTGGCTAAACATAACAAC	57.686	37.500	0.00	0.00	0.00	3.32
216	217	1.750778	AGGCATGTTTTGGAATAGCGG	59.249	47.619	0.00	0.00	0.00	5.52
217	218	2.684881	AGAGGCATGTTTTGGAATAGCG	59.315	45.455	0.00	0.00	0.00	4.26
357	358	7.484035	AAGAAACTCAAAACTAGCACTACTG	57.516	36.000	0.00	0.00	0.00	2.74
406	410	8.499403	AAATTTCTCTATGCCTTTCTGTAGAC	57.501	34.615	0.00	0.00	0.00	2.59
439	445	6.773976	ATTCCAACATAAATTGTCCATCGT	57.226	33.333	0.00	0.00	37.68	3.73
440	446	6.019640	GCAATTCCAACATAAATTGTCCATCG	60.020	38.462	8.96	0.00	42.29	3.84
441	447	7.043565	AGCAATTCCAACATAAATTGTCCATC	58.956	34.615	8.96	0.00	42.29	3.51
511	520	3.694566	GCCGGACCTCACTCAAATAAAAT	59.305	43.478	5.05	0.00	0.00	1.82
590	599	2.345991	CCGCAGTTCCCTTTCCGA	59.654	61.111	0.00	0.00	0.00	4.55
610	619	2.047179	GAACAGGCCGGGTGTCTC	60.047	66.667	8.08	0.00	0.00	3.36
661	673	7.897030	TGGGAGAAATCGGATAGGTATACATTA	59.103	37.037	5.01	0.00	0.00	1.90
667	679	5.011982	TCTGGGAGAAATCGGATAGGTAT	57.988	43.478	0.00	0.00	0.00	2.73
680	692	8.044309	TCACGATATGTTATTTTTCTGGGAGAA	58.956	33.333	0.00	0.00	31.28	2.87
940	953	2.583024	TTGGATCAATCAGTGTGGCA	57.417	45.000	0.00	0.00	0.00	4.92
941	954	3.705043	GATTGGATCAATCAGTGTGGC	57.295	47.619	13.76	0.00	46.50	5.01
967	980	8.482943	AGTGGATTTATAGTGTGCACTAATGTA	58.517	33.333	19.41	3.97	45.87	2.29
968	981	7.338710	AGTGGATTTATAGTGTGCACTAATGT	58.661	34.615	19.41	4.94	45.87	2.71
969	982	7.306807	CGAGTGGATTTATAGTGTGCACTAATG	60.307	40.741	19.41	0.94	45.87	1.90
970	983	6.701841	CGAGTGGATTTATAGTGTGCACTAAT	59.298	38.462	19.41	10.94	45.87	1.73
971	984	6.040247	CGAGTGGATTTATAGTGTGCACTAA	58.960	40.000	19.41	5.26	45.87	2.24
1017	1031	0.322975	TGCTCTCTTCTTGGGTGAGC	59.677	55.000	0.00	0.00	45.08	4.26
1022	1036	0.324285	AGCAGTGCTCTCTTCTTGGG	59.676	55.000	13.14	0.00	30.62	4.12
1182	1202	1.695893	CCTCGTCGCCGTAGAACGTA	61.696	60.000	0.00	0.00	40.58	3.57
1203	1223	1.663379	TACCCATCGTCTCGGCTGTG	61.663	60.000	0.00	0.00	0.00	3.66
1206	1226	2.478890	CGTACCCATCGTCTCGGCT	61.479	63.158	0.00	0.00	0.00	5.52
1235	1255	1.652124	GACCAATGTAGTACGTGTGCG	59.348	52.381	0.00	0.00	44.93	5.34
1429	1454	1.226888	GTAACAGGCCGTAGCTCCG	60.227	63.158	0.00	0.00	39.73	4.63
1430	1455	0.179108	CTGTAACAGGCCGTAGCTCC	60.179	60.000	0.00	0.00	39.73	4.70
1431	1456	0.179108	CCTGTAACAGGCCGTAGCTC	60.179	60.000	0.00	0.00	45.13	4.09
1669	1694	2.906897	AACAGCCAGTGCGGGTTG	60.907	61.111	3.98	3.98	45.83	3.77
1945	1970	1.004560	TGCCTCAGACCTTCGCTTG	60.005	57.895	0.00	0.00	0.00	4.01
1986	2011	2.311294	GCAGAGCGTTGTCAGTGTT	58.689	52.632	0.00	0.00	0.00	3.32
2134	2162	1.530293	GCTGCAGAGTTTCACTGTCAG	59.470	52.381	20.43	0.00	39.72	3.51
2198	2228	7.253321	CGCGGAAAATTCTTAATTGAACTAAGC	60.253	37.037	0.00	0.00	0.00	3.09
2200	2230	7.535940	CACGCGGAAAATTCTTAATTGAACTAA	59.464	33.333	12.47	0.00	0.00	2.24
2221	2252	0.986270	TATACAAAGACGTGCACGCG	59.014	50.000	37.35	22.37	44.43	6.01
2222	2253	1.722464	TGTATACAAAGACGTGCACGC	59.278	47.619	37.35	28.26	44.43	5.34
2223	2254	4.090786	TGATTGTATACAAAGACGTGCACG	59.909	41.667	35.99	35.99	41.44	5.34
2224	2255	5.347635	TCTGATTGTATACAAAGACGTGCAC	59.652	40.000	21.57	6.82	39.55	4.57
2225	2256	5.474825	TCTGATTGTATACAAAGACGTGCA	58.525	37.500	21.57	10.26	39.55	4.57
2226	2257	5.005779	CCTCTGATTGTATACAAAGACGTGC	59.994	44.000	21.57	6.75	39.55	5.34
2227	2258	6.035005	CACCTCTGATTGTATACAAAGACGTG	59.965	42.308	21.57	21.66	39.55	4.49
2228	2259	6.100004	CACCTCTGATTGTATACAAAGACGT	58.900	40.000	21.57	16.04	39.55	4.34
2229	2260	5.520288	CCACCTCTGATTGTATACAAAGACG	59.480	44.000	21.57	15.51	39.55	4.18
2230	2261	5.294552	GCCACCTCTGATTGTATACAAAGAC	59.705	44.000	21.57	15.51	39.55	3.01
2231	2262	5.189736	AGCCACCTCTGATTGTATACAAAGA	59.810	40.000	21.57	18.25	39.55	2.52
2232	2263	5.295292	CAGCCACCTCTGATTGTATACAAAG	59.705	44.000	21.57	15.22	39.55	2.77
2233	2264	5.185454	CAGCCACCTCTGATTGTATACAAA	58.815	41.667	21.57	6.13	39.55	2.83
2234	2265	4.384098	CCAGCCACCTCTGATTGTATACAA	60.384	45.833	20.14	20.14	40.51	2.41
2235	2266	3.134623	CCAGCCACCTCTGATTGTATACA	59.865	47.826	0.08	0.08	36.19	2.29
2236	2267	3.134804	ACCAGCCACCTCTGATTGTATAC	59.865	47.826	0.00	0.00	36.19	1.47
2237	2268	3.134623	CACCAGCCACCTCTGATTGTATA	59.865	47.826	0.00	0.00	36.19	1.47
2238	2269	2.092753	CACCAGCCACCTCTGATTGTAT	60.093	50.000	0.00	0.00	36.19	2.29
2239	2270	1.278985	CACCAGCCACCTCTGATTGTA	59.721	52.381	0.00	0.00	36.19	2.41
2240	2271	0.037303	CACCAGCCACCTCTGATTGT	59.963	55.000	0.00	0.00	36.19	2.71
2241	2272	0.679002	CCACCAGCCACCTCTGATTG	60.679	60.000	0.00	0.00	36.19	2.67
2242	2273	0.842030	TCCACCAGCCACCTCTGATT	60.842	55.000	0.00	0.00	36.19	2.57
2243	2274	0.622738	ATCCACCAGCCACCTCTGAT	60.623	55.000	0.00	0.00	36.19	2.90
2244	2275	0.042581	TATCCACCAGCCACCTCTGA	59.957	55.000	0.00	0.00	36.19	3.27
2290	2321	1.668419	CCGATTGGAGTTGGCCTTAG	58.332	55.000	3.32	0.00	37.49	2.18
2306	2337	3.926318	TCCGTTTGGTTCGGCCGA	61.926	61.111	27.28	27.28	46.49	5.54
2314	2345	1.335496	CAAATCCAACGTCCGTTTGGT	59.665	47.619	1.71	0.00	36.00	3.67
2348	2379	1.358152	CCCTCCTGACCACCTAAACA	58.642	55.000	0.00	0.00	0.00	2.83
2407	2446	3.616219	TCAAATGGATTACCCGTTGGAG	58.384	45.455	0.00	0.00	43.22	3.86
2784	2849	6.092670	CGTGATGACAACTTCTATGACCAAAT	59.907	38.462	0.00	0.00	0.00	2.32

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.