>input_sequence_64941
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----------------------------------------------------ATGCCATCTTCTG-CAGAGCTCACCCAA
GAAGAGAGCACTGCTACAAGGCAAAGCGAAGCGAAGGCAATGGCTTCTGCTGC------GTCCAAGTCCGCGGCCGTCTT
GGTCCTCCTCGTCTCCCTTGCCGGCGTGGCCACCACCGTGGACGCCAGGTTCAGGGCCATGCAGTGGACTCCCGCCCACG
CTACGTTCTACGGCGACGAGGCCACAGCCGAGACGATGGGTACGTCGCCTGCACCGCACACGTACTACATTGGTCAATGA
CCATGCATGCTTATT-----CCTTGTTATGCTGATGTATCGTGCTTGTGTTCTCGCAGGCGGGGCGTGCGGGTACGACAT
CACGGCGGGGTACGGCGCGGACACGGCGGCGCTGAGCTCGACGCTGTTCCTGGACGGCTACGGGTGCGGGACGTGCTACC
AGATCCGGTGCGTCGGAGCTACGGCCTGTTACAGGGGCTCGCCGGTGATCACGGTGACCGCGACCAACCTGTGCCCGCCC
AACTGGGCGCAGGACACCAACAACGGCGGCTGGTGCAACCCACCGCGCACCCACTTCGACCTCGCCATCCCGGCCTTCAA
GAAGATGGCCGACTGGCATGCGGGCATCGTCCCCGTCATGTACCGCAGGGTGCCGTGCATGCGCAAGGGCGGGATCCGGT
TCGCGTTCCAGGGCAACCCGCACTGGCTGTTGGTGTACGTCACCAACGTCGGCGGCGCCGGCGACGTCGGGGAGATGTGG
GTGAAGGGCAATGGCGGCATGGGGTGGCTGCGCATGAGCCACAACTGGGGCGCCTCGTACCAGGCGTTCCGGCAGCTCGG
CGGCCAGGCGCTGAGCTTCAAGCTCACCTCCTACACCACCGGGCTGACCATCGTCGCCGCCGACGCCGCGCCGGCGAGCT
GGAGCATCGGGCTCACGTACCAGGCTCGCGCCAACTTCAAATAG------------------------------------
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--------------------------------------------
>chr1A_1_TraesCS1A01G199300
AACCTTCAACGTAGCCAAAAGTAACATGTATGCTGAGTGGATGCGAGGCAAGATTGCATTGAACCTCACAGAGTAGGGTA
AAACGCGCAACACACAATTGTAACCACACGAAAAGTGGTCTAGAACATGTGTCGGGAAGTCACATTTACCGGACATAGTA
ATGGTACCCCTCGCATAATCGATGATGTTGTTATGTTTAGCCAAGTCACTAAACATCCGCTATTCCAAAACATGCCTCTC
ATGATGAATCACGATTAGATTGAGAGACATTTGCCTTCTTGGACATGTATCAACAACCTTAAACAATACATTTTTAAGAC
CTTATTATTTTTCGAGGTCATTCTCTTCAGCCTGTGTCAGTAGTGCTAGTTTTGAGTTTCTTTCAAGTACCTTATCTACT
AG---GGGGGTCTACAGAAAGGCATAGAGAAATTT--TTTTTTTACGA-TGGACAATTTATGTTGGAATTGCTTTGCTCT
TTTCTTTACAGCTCAAGCAAATAAGCTTGAAAAAA--TGATTTTATTTGAGTGAGGTCCGGCCTTCCATGCCCGTGGCTA
CTTAATCATTGATCCGACGGCCAAGATCAGCTGCTTCTTCGGAAAGGGAACTGCGGGGGAGACACCC-GGCCTGTTCATT
GTATATGTA--ATTTTGTCCAATCTAGAATAATAATGTATACCTATCCGATTTCTCCCAGAAAA-ATAACATATCGTGAT
CAGAAATTAAAAGACACAGTTCCAACATGCGAAATTCCTTTTCGAAGGAGAAAAACATACAAAATCCGGTCTACCAGCAA
AACGGCAGAATAACAGAGTACAGCTCGGTTCCTTGCCCGCACGTATGGCACGCCGTACAAATTTCCACGATTTCGCGACT
GCGTGCAGGCACGACTTGGCCCGAAGATTGAACGATATATGTTCCTCCTCAATCATCACCGGCTGATCTAACTGCCACAC
TGATTGATCCAATCCGACGTACATTAGTGCACACTATAAATCCACTCGCCCCATGCCATCTTCTG-CAGAGCTCACCCAA
GAAGAGAGCACTGCTACAAGGCAAAGCGAAGCGAAGGCAATGGCTTCTGCTGC------GTCCAAGTCCGCGGCCGTCTT
GGTCCTCCTCGTCTCCCTTGCCGGCGTGGCCACCACCGTGGACGCCAGGTTCAGGGCCATGCAGTGGACTCCCGCCCACG
CTACGTTCTACGGCGACGAGGCCACAGCCGAGACGATGGGTACGTCGCCTGCACCGCACACGTACTACATTGGTCAATGA
CCATGCATGCTTATT-----CCTTGTTATGCTGATGTATCGTGCTTGTGTTCTCGCAGGCGGGGCGTGCGGGTACGACAT
CACGGCGGGGTACGGCGCGGACACGGCGGCGCTGAGCTCGACGCTGTTCCTGGACGGCTACGGGTGCGGGACGTGCTACC
AGATCCGGTGCGTCGGAGCTACGGCCTGTTACAGGGGCTCGCCGGTGATCACGGTGACCGCGACCAACCTGTGCCCGCCC
AACTGGGCGCAGGACACCAACAACGGCGGCTGGTGCAACCCACCGCGCACCCACTTCGACCTCGCCATCCCGGCCTTCAA
GAAGATGGCCGACTGGCATGCGGGCATCGTCCCCGTCATGTACCGCAGGGTGCCGTGCATGCGCAAGGGCGGGATCCGGT
TCGCGTTCCAGGGCAACCCGCACTGGCTGTTGGTGTACGTCACCAACGTCGGCGGCGCCGGCGACGTCGGGGAGATGTGG
GTGAAGGGCAATGGCGGCATGGGGTGGCTGCGCATGAGCCACAACTGGGGCGCCTCGTACCAGGCGTTCCGGCAGCTCGG
CGGCCAGGCGCTGAGCTTCAAGCTCACCTCCTACACCACCGGGCTGACCATCGTCGCCGCCGACGCCGCGCCGGCGAGCT
GGAGCATCGGGCTCACGTACCAGGCTCGCGCCAACTTCAAATAGGAGTCCAAGCGAAGGTCTGAGGCACAGCACAAGAAG
CAGGAGCTGTAACACTGACAACGCTCTGCGGTGCTAT-GCTGGGATGATCGTTGCCCTCTACCGTTTT-CGTTGCGTCGT
TCCTTATTTTCAGTTCTCTCTAGGACCACTCTCGCGCGTTGCCCCCGTCCATGTGAAGAGCG-GGGGGTTTGACGCACGC
ACTGACAGTGAAA-CTCTGCAGCACGATCAAAGCAAAAGATTTGCAGATTGTATTGTGCCT-AAAAAGCT-TAGTTCAAT
TAAGAATTTTCCGCGTGCACGTCTTTGTATACAATCAGAGGTGGCTGGTGGATAGACTAAAGACTAAAGTTGGTACAGCC
CTAAGGCCAACTCCAATCGGCCGAACCAAACGGACGTTGGATTTGTCCGCTTTCTATTTGTTTAGG--TGGTCAGGAGGG
GCGGTGTCTACC-CCTTGTCCGCTCTTTTCTGACCGG-----TGCCTCCAACGGGTAATCCA--TTTGATCCGCACCGCT
G-TTTTTTATCTAAATTTTCTTATTTTAGACATTCTACACATTTA---CATCAAATAAACAAATG--AACGAAACAT---
-CATTATTAAATAAATAAGTCAGATAATTTACAACCA-----AACAA----AT-AGAAATCACATAGTTTTACAACCACA
TAAATTTAAAATTATAGCAAATAAATTGAAAGAAAAAGAGCAGATATAA--C-ATTGGTTTTTTATGTGAGTCCACATAT
GTTCAACCAAATCATTT-GAAGTTGAATGTGAGTTGCTTGATCACGTATTTCATGATGAAATTGGATGAACTGTGCAAAA
GTTGCCGCTTCTCCCTCGAGCTCAACCAACTCATCCTCATAATCCCATATTTGGTCATAGAAGTTGTCATCACGCTCATC
CTCTACGATCATGTTATGCATGATCACACAACCTGTCATTACCTCCCATGTAGTGCTAGTGCTCCATGTTCTAGTAAGAC
ACCGAACAATAACCCAACAAGATTGGAGCACACCAAATGCACGC
>chr1D_1
AACCTTCAACATAGCCAGAAGTAACATGTATGTTGAGTGGATGCGAGGCAAGATTGCATTGGACCTCACGGAGTAGGGTA
AAATGCACAACACACAATTGTAACCACATGAAAAATGGTCTAGAACATTTGTCGGAAAGTCACATTTACCGGACTTTGTA
ATGGTACCCCTCACAAAATCGGTGATATTGTTATGTTTAGCCAAGTCACTAAACATTTGTTATTCCAAAACATACCTCTC
ATGATGAATCACGATTAGATTTAGAGACATTTGCCTTCTTGGACAGGTATCAACGACCTTAAAAAG-TCATTTTTAAGAC
CTTATTATTTTTCGAGGTCATTCTCTTCAGCCTGTGTTAGTAGTGCTAGTTTTGAGTTTGTTTTAAGTACATTATCTACT
AG---GGGG-TCTATAGAAAGGCATAGAGAATTTA--TTTATTTTACGGTAGACAATTTATGTTGGAATTGCTTTGCTCT
TTTCTTTACAACTCAAGCAAATAAGCTTGAAAAAAAATGCTTTTATTTGAGTGAGGTCCTGTCTTCCGTGCCCGTGGCTA
---AATCATTGATCCGATGGCCAAGATCAACTGCTTCTCCGGAAA----------GGGAAGACACCC-GGCCTGTTCATT
GTATATGTA--ACTCTGTCCAACCTAGAATAAGAATGTTAACCTATCCGATCTCTCCCAGAAAA-ATAACATATCGTGAT
TAGAAATTGAAAGACACAGTTCCAACATGCGAAATTCCTTTTCGAAGGAGAAAAACGTACAAAATCCGGCCTACCAGCAA
AACGGCAGAATAACAGAGTACAGCTCGGTTCCTTGCCCGCACGTATGCCACGCCGTACAAATCTCCACGATTTCGCGAGT
GCGTGCAGGCACGACTTGGCCCGAAGATTGAACGATATATGTTCCTCCTCAATCATCACCGGCTGATCTAACCACCACAC
TGATTGATCCAATCCGACG-----TAGTGCACACTATAAATCCACTCGCCCCATGCCATCTTCTGACAGAACTCAGCCAA
GAAGAGAGCACTACTACAAGGGAAAGCGAAGCGAAGGCAATGGCTTCTGCTGC------GTCCAAGTCCGCGGCCGTCTT
GGTCCTCCTCGTCTCCCTTGCCGGCGTGGCCACCACCGTGGACGCCAGGTTCCGGGCCATGCAGTGGACTCCCGCCCACG
CCACGTTCTACGGCGACGAGGCTACGGCCGAGACGATGGGTACGTCGCCTGCACTGCACACGTACTACATTGATCAATGA
CCATGCATGCTTA-----TTCCTTGTTATGCTGATGTATCGTGCTTGTGTTCTCGCAGGCGGGGCGTGCGGGTACGACAT
CACGGCGGGGTACGGCGCGGACACGGCGGCGCTGAGCTCGACGCTGTTCCTGGACGGCTACGGGTGCGGGACGTGCTACC
AGATCCGGTGCGTGAAAGCCACGGCTTGCTACAGGGGCTCGCCGGTGATCACGGTGACCGCGACCAACCTGTGCCCGCCC
AACTGGGCGCAGGACACCAACAACGGCGGCTGGTGCAACCCGCCGCGCACCCACTTCGACCTCGCCATCCCGGCCTTCAA
GAAGATGGCCGACTGGCATGCGGGCATCGTCCCCGTCATGTACCGAAGGGTGCCGTGCATGCGCAAGGGCGGGATCCGGT
TCGCGTTCCAGGGGAACCCGCACTGGCTGCTGGTGTACGTCACCAACGTCGGCGGCGCCGGCGACGTCGGGGAGATGTGG
GTGAAGGGCGGTGGCAGCATGGGGTGGCTGCGCATGAGCCATAACTGGGGCGCCTCGTACCAGGCGTTCGGGCAGCTCGG
CGGCCAGGCGCTCAGCTTCAAGCTCACCTCCTACACCACCGGGCTGACCATCGTCGCCGCCGACGCCGCGCCGGCGAGCT
GGAGCATCGGGCTCACGTACCAGGCTCGCGCCAACTTCAAATAGGAGTCGAAGCGAAGGTCTGGGGCACAGCACA-----
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>chr1B_1
AACCTTCAACATAGCCAAAAGTAACATGTATGTTGGGTGAATGCGAGGCAAGATGGCATTGGACCTCTCAAAGTAGGGTA
AAATGCGCAACACACAATTGTAACCCCACGAAAAATGTTCTAGAACATGTGTTGGGAAGTCACATTTACCGGACTTTGTA
ATGGTACCCCTCACATAATCGATGATATTGTTATGTTTAGCCAAGTCACTAAACATATGTTATTCTAAAACATGCCTCTC
ATGATGAATCACGATTAGATTTAGAGACATTTGCCTTCTTGGACAGGTATGAATGACTTTATACAAATCATTTTTAAGAC
CTTATTATTTTTCGAGGTCATTCACTTTAGCCTGTGTTAGTAGTGCTAGTTTTGAGTTTGTTTTAAGTACCTTATCTACT
AG---GGGG-TCTATAGAAAGGCATAGAAAATTTATGTTTCTTTTACAGTAGACAATTTATGTTGGAACTGCTTTGCTCT
TTTCTTTACAGCTCAAGCAAATAAGCTTGAAAAA---TGCTTTTATTTGAGTGAGGTTCGGCCTTCCGTGCCCGTGGCTA
CTTAATCATTGATCTGAC--------------------------------------------------------------
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>chr1A_165
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----TACCCCTCGCATAATCGATGATATTGTTATGTTTAGCCAAGTCACTAAACATATGCTATTTCAAAACATGCCTCTC
GTGATGAATCACGATTAGATTGAGAGACATTTGCCTTCTTGGACATGTATCAACGACCTTAAACAAAACATTTTTAAAAC
CTTATTATTTTTCGAGGTCATTCTCTTCAGCCTGTGTAGTT-GTGCTAGTTTTGAGTTTGTTTTAAGTACCTTATCTACT
AGGGGGGGG-TCTACATAAAGGCATAGAGAA-----GTTTTTTTTATGGTGGACAATTTATGTTGGAATTGCATTGCTTT
TTTCTTTATAGCTCAAGGAAATAAGCTTGAAAAAA--TGTTTTTATTTGGGTGAGGTCCGGCCTTCCGTGCCCGTGGCTA
CTTAATCATTGATCCGACGGCCAAGATCAGCTGCTTTTGCGGAAAGGGAGCCGCGGGGCAGACACCCGGGCCTGTTCATT
GTATATGTATAACTCTGTCCAACCTAGAATAAGAATGTTTACCTATCCGATCTCTCCCAGAAAA-ATAACATATCGTGAT
CAGAAATTAAAAGACACAGTTCCAACATGCAAAATTCCTTTTCGAAGGAGAAAAACATACAAAATCCGGCCTACCAGCAA
AACGGCAGAATAACAGAGTACAGCTCGGTTCCTTGCCCGCACGTATGGCACGCCGTACAAATCTCCACGATTTCGCGACT
GCGTGCAGGCACGACTTCTCCCGAAGATTGAACGATATATGTTCCTCCACAATCATCACCGGCTGATCTAACCACCACAC
TGATTGATCCAATCCGACG-----TAGTGCACACTATAAATCCACTCGCCCCATGCCATCTTCTGACAGAACTCAGCCAA
GAAGAGAGC---GCTACAAGGCAAAGCGAAGCGAAGGCAATGGCTTCTGCTGC------GTCCAAGTCCGCGGCCGTCTT
GGTCCTCCTCGTCTCCCTTGCCGGCGGGGCCACCACCGTGGACGCCAGGTTCAGGGCCATGCAGTGGACTCCCGCCCACG
CCACGTTCTACGGCGACGAGGCTACGGCCGAGACGATGGGTACGTCGCCTGCACTGCACACGTACTACATTGGTCAATGA
CCATGCATGCTTATTCGGTTCCTTGTTATGCTGATGTATCGTGCTTGTGTTCTCGCAGGCGGGGCGTGCGGGTACGACAT
CACGGCGGGGTACGGCGCGGACACGGCGGCGCTGAGCTCGACGCTGTTCCTGGACGGCTACGGGTGCGGGACGTGCTACC
AGATCCGGTGCGTGAAAGCCACGGCCTGCTACAGGGGCTCGCCGGTGATCACGGTGACCGCGACCAACCTGTGCCCGCCC
AACTGGGCGCAGGACACCAACAACGGCGGCTGGTGCAACCCGCCGCGCACCCACTTCGACCTCGCCATCCCGGCCTTCAA
GAAGATGGCCGACTGGCATGCGGGCATCGTCCCCGTCATGTACCGCAGGGTGCCGTGCATGCGCAAGGGCGGGATCCGGT
TCGCGTTCCAGGGGAACCCGCACTGGCTGTTGGTGTACGTCACCAACGTCGGCGGCGCCGGCGACGTCGGGGAGATGTGG
GTGAAGGGCAATGGCGGTATGGGGTGGCTGCGCATGAGCCACAACTGGGGCGCCTCGTACCAGGCGTTCGGGCAGCTCGG
CGGCCAGGCGCTCAGCTTCAAGCTCACCTCCTACACCACCGGGTTGACCATCATCGCCGCCGACGCCGCGCCGGCGAGCT
GGAGCATCGGGCTCACGTACCAGGCTCGCGCCAACTTCAAATAGGAGTCGAAGCGAAGGTCTGAGGCACAGCAGAAGAAG
CAGGAGCTGTGACGCTGACAACGCTCTGCGGCGCTATTGCTGGGATGATCATTGTCCA-TACCGTTTT-CGTTGCTTCCT
TTCTTATTTTCAGTTATTTCTAGGACC-CTGTCGCGCGTTGCCGCCGTCCATGTGAAGAGCGTGGGGGTTTGACGTACGC
AATGACAGTGAAAACTCTGTAGCACGATCAAAGCAAAAGATTTGCAGATTGTATTGTGCCTAAAAAAACC-TAGTTCAAT
TAAGAATTTTC---------------------------------------------------------------------
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>chr1B_654
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------------------------TAGAATAAGAATGTTAACCTATCCGATCTCTCCCAGAAAAAATAACATATCGTGAT
CAGAAATTAAAAGACACAGTTCCAACGTGCGAAATTCCTTTTCGAAGGAGAAAAACATACAAAATCCGGTCTACCAGCAA
AACGGCAGAATAACAGAGTACAGCTCGGTTCCTTGCCCGCACGTATGCCACGCCGTACAAATCTGCACGATTTCGCGACT
GCGTGCAGGCACGACTTGGCCCGAAGATTGAACGATATATGTTCCTCCTCAATCATCACCGGCTGATCTAACCACCACAC
TGATTGATCCAATCCGACG-----TAGTGCACACTATAAATCCACTCGCCCCATGCCATCTTCTGACAGAACTCAGCCAA
GAAGAGAGCACTACTACAAGGCAAAGCGAAGCGAAGGCAATGGCTTCTGCTGCGTCCAAGTCCAAGTCCGCGGCCGTCTT
GGTCCTCCTCGTCTCCCTTGCCGGCGTGGCCACCACCGTGGACGCCAGGTTCAGGGCCATGCAGTGGACTCCCGCCCACG
CCACGTTCTATGGCGACGAGGCTACGGCCGAGACGATGGGTACGTAGCCTGCACTGCACACGTACTACATTGGTCAATGA
CCATGCATGCTTGTT-----TCTTGTTATGCTAATGTCTAGTTCTTGTGTTCTCGCAGGCGGGGCGTGCGGGTATGATAT
CACGGCGGGGTACGGCGCGGACACGGCGGCGCTGAGCTCGACGCTGTTCCTGGACGGCTACGGGTGCGGGACGTGCTACC
AGATCCGGTGCCTGAAAGCCACGGCCTGCTACAGGGGCTCGCCGGTGATCACGGTGACCGCGACCAACCTGTGCCCGCCC
AACTGGGCGCAGGACACCAACAACGGCGGCTGGTGCAACCCGCCGCGCACCCACTTCGACCTCGCCATCCCGGCCTTCAA
GAAGATGGCCGACTGGCATGCGGGCATCGTCCCCGTCATGTACCGCAGGGTGCCGTGCATGCGCAAGGGCGGGATCCGGT
TCGCGTTCCAGGGGAACCCGCACTGGCTGCTGGTGTACGTCACCAACGTCGGCGGCGCCGGCGACGTCGGGGAGATGTGG
GTGAAGGGCAATGGCGGCATGGGGTGGCTGAGCATGAGCCACAACTGGGGCGCCTCGTACCAGGCGTTCGGGCAGCTCGG
CGGCCAGGCGCTCAGCTTCAAGCTCACCTCGTACACCACCGGGCTGACCATCATCGCCGCCGACGCCGCGCCGGCGAGCT
GGAGCATCGGGCTCACGTACCAGGCTCGCGCCAACTTCAAATAGGAGCCGAAGCGAAGGTCTGAGGCACGGCACAAGAAG
CAGGGGCTGTGACACTGACAACGCTCTGCGGTGCTCT-GCTGGGATGATCGTTGCCCTCTACCGTTTTTCGTTGCTTCGT
TCCTTACTTTC-------TCTAGGACA-CCGTCGCGCGTTGCCCCTGTCCATGTGAACCACGGGGGGGTTTGACGCACGA
CTGATAGTGTAAAACTCTGCAGCACGATCAAAGCAAAACATTTGCAGGTTGTATTGTGTCTAAAAACACCCTAGTTCAAT
TAA-----------------------------------------------------------------------------
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>chr1B_654
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------------------------TAGAATAAGAATGATAACCTATCCGATCTCTCCCAGAAAAAATAACATATCGTGAT
CAGAAATTAAAAGACACAGTTCCAACGTGCGAAATTCCTTTTCGAAGGAGAAAAACATACAAAATCCGGTCTACCAGCAA
AACGGCAGAATAACAGAGTACAGCTCGGTTCCTTGCCCGCACGTATGCCACGCCGTACAAATCTGCACGATTTCGCGACT
GCGTGCAGGCACGACTTGGCCCGAAGATTGAACGATATATATTCCTCCTCAATCATCACCGGCTGATCTGACCACCACAC
TGATTGATCCAATCCGACG-----TAGTGCACACTATAAATCCACTCGCCCCATGCCATCTTCTGACAGAACTCAGCCAA
GAAGAGAGCACTACTACAAGGCAAAGCGAAGCGAAGGCAATGGCTTCTGCTGCGTCCAAGTCCAAGTCCGCGGCCGTCTT
GGTCCTCCTCGTCTCCCTTGCCGGCGTGGCCACCACCGTGGACGCCAGGTTCAGGGCCATGCAGTGGACTCCCGCCCACG
CCACGTTCTATGGCGACGAGGCTACGGCCGAGACGATGGGTACGTAGCCTGCACTGCACACGTACTACATTGGTCAATGA
CCATGCATGCTTGTT-----TCTTGTTATGCTAATGTCTAGTTCTTGTGTTCTCGCAGGCGGGGCGTGCGGGTACGATAT
CACGGCGGGGTACGGCGCGGACACGGCGGCGCTGAGCTCGACGCTGTTCCTGGACGGCTACGGGTGCGGGACGTGCTACC
AGATCCGGTGCGTGAAAGCCACGGCCTGCTACAGGGGCTCGCCGGTGCTCACGGTGACCGCGACCAACCTGTGCCCGCCC
AACTGGGCGCAGGACACCAACAACGGCGGCTGGTGCAACCCGCCGCGCACCCACTTCGACCTCGCCATCCCGGCCTTCAA
GAAGATGGCCGACTGGCATGCGGGCATCGTCCCCGTCATGTACCGCAGGGTGCCGTGCATGCGCAAGGGCGGGATCCGGT
TCGCGTTCCAGGGGAACCCGCACTGGCTGCTGGTGTACGTCACCAACGTCGGCGGCGCCGGCGACGTCGGGGAGATGTGG
GTGAAGGGCAGCGGCGGCATGGTGTGGCTGCGCATGAGCCACAACTGGGGCGCATCGTACCAGGCGTTCGGGCAGCTCGG
CGGCCAGGCGCTCAGCTTCAAGCTCACCTCCTACACCACCGGGCTGACCATCGTCGCCGCCGACGCCGCGCCGGCGAGCT
GGAGCATCGGGCTCACGTACCAGGCTCGCGCCAACTTCAAATAGGAGTCGAAGCGAAGGTCTGAGGCACAGCACAAGAAG
CAGGAGCTGTGACACTGACAATGCTCTCCGGTGCTCT-GCTGGGATAATCGTTGCCCTCTACCGTTTT-CGTTGCGTCGT
TCCTTATTTTCAGTTCTCTCTAGGACCACTCTCGCGCGTTGCCCCCGTC-------------------------------
--------------------------------------------------------------------------------
-----------------------------------CAGAGGTGGCTGGTGGATAGACTAAAGACTAAAGTTGGTACAGCC
GTAAGGCCAACTCCAACCGGCCGA-CCCAACGGACGTTGGATTTGTCCGCTTTCTATTAGTTTATAGATGGTCTGGAGGG
GCGGTGTCTATC-CGTTGTCAGCTCTTTTCTGGCCGG-----TGCGTCCAACGGGTAATCCA--TTTGATTCGCATTGCT
G--TTTTTATCTAAACTTTCTTATTTTAGACATTCTACACATTTA---CATCAAATAAACAAATG--ATTGAAACATTGC
ACATTATTAAATAAATAAGTCAAATAACTTACAACCA-----AACAA----AT-ATAAATCACATAGTTTTACAACCAAA
TAGATTTAAAATTATAGCAAATAAATTGAAAGAAAAAGAGCAGATATAA--CTATTGGTTTTTTACGTGAGTCCACATAT
GCTTAACCAAATCATTT-GAAGTTGAATGTGAGTTGCTTGATCACGTATTTCATGATGAAATTGGATGAACTACGCAAAC
GTTGCCGCCTCTCCCTCGAGCTCAACCAACTCACCCTCATAATCCCATCTTTGGTCATAGAAGTTGTCATCACGCTCATC
CTCTACGATCATGTTGTGCATGATCACATAACCTGTCATTACCTCCCATGTAGTGCTAGTGCTCCATGTTCTAGTAAGAC
ACCGAACAATAACCCAACAAGATTGGAGCACACCAAATGCA---
>chr4D_2308
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-----------------CGGCCGACCCAAACGGACGTGGAGTTTGTCCGCTTTTTATTCTTTCGGG--TGTCCAGGAGGG
ACGGTGGCGTCCACCTTGTCCGCTCTTTTCTACTAAGTGACTTGCGCCCAACGGGGTGACCCATTTGGTCATCACCGTCG
TTTTTTATATCTAAGTTTTCTCATTTTAGATATT-TAGACATTTA---CAACAAATAAACAAATG--AATGGAACATTGC
ACATTATTAAACAAATAAGTCAGATAGCTTACAGCCA-----AATAA----AT-AGAAATCACATAGTTTTACAACCATA
TAAACGTAAAATTATAGAAAAC-AATTGGAGGGAAAAGAGCAAATACAA--CTATTGATTTACTATGCGAGTCCACACAT
GCTCAATCAAATCATCTTGAAGTTGAATGTGAGTTGCCTGATAACGCATTTCATGATGAAAATGGATGAATTCTGCAAAC
ATTCCCGCTCCGCCTTCAGGCTCAACCAACTCACCCTGGTAATCCCACCCTTGGTCATAGAGTCTGTCATCATGCTCATC
CTACTATGAT------------------------------------------------------CATGTTCTAGCAT---
--------------------------------------------
>chr1D_2381
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-------------CCTTATCCGCGTCATTCTGATCAG-----TGCACCCAACCGGCCAACCCATTTGGTGCATCTCAGCC
G-TTTTGTTGCCAAATTTTATCAAATTCGATAATCTATACATATT---AATTAAATGAACAAATAAAAATGAAACACTGC
TCCCAATTAAAAAAATAAGTCAAATACTTTTTATTACTACAGAATAA----ATGAAAAATCACATAG-TTTACAACCAAA
TGAATTTGAAATTGTAGCAAATACAATGAAAGAAAAGGAGCAGAAATATATCTCTTGGTTGCCTATGTGAGTCCACATAT
GCTCAACCAAATCATTTTAAAGTTGAATATGAGTTGTCCAATCACACATTTCTTGGTCAAATATGGTGAATTGTGCATAG
GTTGTTGCGCCATACATAGGCTCAACGTTCTTACCCTGAAAATCAAACCCTTGGTCAAAGAGGTTGTCATCACGCTCATC
CTCTACGATCACGTTGTGCATGATAACACAACATGTCATCACCTCTCACATCTTATGAGTGCTCCATGTTCTAGCAGGGT
GCCAAACAATAGCCCATCAAGATTGGAGCACATCAAAAGCAC--
>chr5A_2404
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------------------------------------G-----TGCGTCCAACGGGCCGACCCATTTGGTCCACCTCACTA
GTTTTT-TTGCCAATA-TTTCTCTATTTGACATTCGATATATATA---AATGAAATAAACAAATAAAAATAAAACATTGG
ACATGATTAAACAAACAAGTCACATAGTTTTTATAGCAC-------AATAAAT-AAAAATCTCATAG-TTTACAACCAAA
TGAATTTAAAATTGTAGCAAATACATTGAAAGAAAAGGAGCAGGTACAT--CTGCAGGTTTCCTATGTGAGTCCACATAT
GCTCAACCAAATCATTTTGAAGTTGAATGTGAGTTGTTCAATCATGCATTTGTTGATGAAGTTGGATGATCTATCCAAAC
ATTGCTTCTCCATACTCAGGCTCAACGTTTTCACCCTAGTAGTCCCTCCCTTGGTCAAAGAGGTTGTCATCACGCTCATC
CTCTACGATCATGTTGTGCAGGATCATACAATCAATCATCACCTCCAACATCCTCTAAGTGCTCCATGTTCTAGCAGGGT
GCCGAACAATAGCCCATAGAGATTGGAGCACACCAAAAGCACGC
>chr5B_2409
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----------------------------------------------TCCAACGGGCCGACCCATGTGGTCCACCTCACTA
GTTTTTTTTGCCAATT-TTTCTCTATTTGACATTCGATACATATA---AATCAAATGAACAAATAAAAATAAAACATTGA
ACATGATTAAACAAACAAGTCACATAGTTTTCATAACAC-------A----AT-AAAAATCTCATAG-TTTACAACCAAA
TGAATTTAAAATTATAGCAAATACATTGAAAGAAAAGGAGCGGGTACAT--CTACTGGCTTCCTATGTGAGTCCACATAT
ACTCAACCAAATCATTTTGAAGTTGAATGTGAGTTGTCCAATCACGCATTTGTTGATGAAATGGGGTGAGTTGTGCAAAC
ATTGCTTCTCCATACTTAGGATCAACATTTTCACCCTAGTAGTCCCTCCCTTGGTCAAAGAGGTTGTCATCACGCTCATC
CTCTACGATCATGTTGTGCATGATCACACAATCAGTCATCGCCTCCAACATCCTCTGAGTGCTCCATGTTCTAGCAGGGT
ACCGAACAATAGCCCATCGAGATTGGAGCACACCAAAAGTACGC
>chr4A_2441
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G-TTTTTTTTCTTAAA-TTGTCCATTTGGACATTCTATACATTTTTACAACCAACCAAACAAATG--AATGAAACATTGC
ACATTATTAGATAAATAAGTCACATAGTT-ACAACGA-----AATAT----AT--AAAATCACATCG-TTTACAAACAAA
TGAATTTAAAATTATAGCAAATACATTGAAAAAATATAA-CATATACAA--CTATTGG--TTTTTTGTGAGTCCACATAT
GCTCAACCAAATCATCTTAAAGTTGAATGTGAGTTATCGGATCACACATTTCATGATGAAATTGGATGAACTGTGCAAAA
TTTGCCGCTCCACTCTCAAGCTCAAGGTTTTCACCATGGTAATGCCACCCATGGTCATAGATGTTGTCATCACGCTCATC
CTCTACGATCATGTTATGCATAATCACACAAGCAGTCATCACCTCCCACATAGTCTCTGAGCTCCATGTTCTAGCAGAGT
GCCGCACAATAGCCCATCGAGATTGGAGCACACCAAAAGCACGC
>SNPs
----------S---------------------S----------------------------S------------------
---S------------------------------S---------------------------------------S-S---
--------------------------S-----------------------------SS----------------------
------------------------------------------------------S-----------S-------------
-------------------------------------S---------------------S---S----------------
---------S---------------------S--S---------SSS---------------------------------
---------------------------------------S---------------------------S------------
--------------------------------------S----------S-S------S---------------------
------------S-S-------S---------S-----S------------S----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------S-----------------
------------------------------------------------------------------------SS------
-------------------SSSSS----------------------------------------------S----S----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-S--------------------S--S----------------------------S-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------SSS---S--------S---------------------------------------------------
-----------------------------------------S--------------------------------------
--------------------------------------------------------------------------------
-------------S------------------------------------------------------------------
---------------------------------------------------------------------S----------
------------S-------------------------------------------------------------------
-------------------------------------------------S------------------------------
----------S---------------------------------------------------------------------
--------------------------------------------------------------------------------
-S-----------------------------------------------------------------S-S----------
-----------SSSSSSSSSSSSSSSSSSSSSSSS---------------------------------------------
S---------------S-------S---------------------------------S---------------------
---------------------------------------------S------------------------------S---
---------------------------------------------------------------------S----------
------------------------------------------------------------------------------S-
--------------------------------------------------------------------------------
-S------------------------------------------------------------------------------
---------------------------------S--------------S-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------
>forward_599
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------GCCAAGATCAGCTGCTTCTT-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------
>reverse_2271
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------ACAATCAGAGGTGGCTGGTG------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------
