Multiple sequence alignment - TraesCS1A01G197800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G197800 chr1A 100.000 3960 0 0 1 3960 355713594 355717553 0.000000e+00 7313.0
1 TraesCS1A01G197800 chr1A 76.800 125 18 9 225 340 119735249 119735371 4.270000e-05 60.2
2 TraesCS1A01G197800 chr1B 95.814 2413 87 8 1371 3781 386159704 386162104 0.000000e+00 3884.0
3 TraesCS1A01G197800 chr1B 92.614 677 29 10 667 1332 386159038 386159704 0.000000e+00 953.0
4 TraesCS1A01G197800 chr1B 90.598 117 11 0 3 119 386158720 386158836 5.300000e-34 156.0
5 TraesCS1A01G197800 chr1D 93.999 1883 61 24 665 2526 284239221 284241072 0.000000e+00 2804.0
6 TraesCS1A01G197800 chr1D 95.781 877 27 4 2517 3390 284241255 284242124 0.000000e+00 1406.0
7 TraesCS1A01G197800 chr1D 96.089 179 7 0 3782 3960 446756632 446756454 3.870000e-75 292.0
8 TraesCS1A01G197800 chr1D 88.496 226 11 4 3448 3671 284242129 284242341 3.930000e-65 259.0
9 TraesCS1A01G197800 chr3D 96.648 179 6 0 3782 3960 556023546 556023724 8.320000e-77 298.0
10 TraesCS1A01G197800 chr3D 75.484 155 28 6 232 378 48440249 48440401 2.550000e-07 67.6
11 TraesCS1A01G197800 chrUn 96.089 179 7 0 3782 3960 62345783 62345605 3.870000e-75 292.0
12 TraesCS1A01G197800 chrUn 96.089 179 7 0 3782 3960 62462824 62462646 3.870000e-75 292.0
13 TraesCS1A01G197800 chrUn 95.531 179 8 0 3782 3960 62407123 62406945 1.800000e-73 287.0
14 TraesCS1A01G197800 chrUn 95.531 179 8 0 3782 3960 62591250 62591072 1.800000e-73 287.0
15 TraesCS1A01G197800 chrUn 96.947 131 4 0 486 616 74690429 74690559 1.850000e-53 220.0
16 TraesCS1A01G197800 chrUn 96.947 131 4 0 486 616 253063365 253063495 1.850000e-53 220.0
17 TraesCS1A01G197800 chr6B 96.089 179 7 0 3782 3960 34337586 34337764 3.870000e-75 292.0
18 TraesCS1A01G197800 chr6B 93.571 140 7 2 476 615 620850850 620850987 1.440000e-49 207.0
19 TraesCS1A01G197800 chr6A 96.089 179 7 0 3782 3960 4285927 4286105 3.870000e-75 292.0
20 TraesCS1A01G197800 chr6A 94.624 186 8 2 3776 3960 4414849 4415033 1.800000e-73 287.0
21 TraesCS1A01G197800 chr6A 90.000 50 4 1 3673 3722 605324743 605324791 3.300000e-06 63.9
22 TraesCS1A01G197800 chr5A 96.947 131 4 0 485 615 145678471 145678341 1.850000e-53 220.0
23 TraesCS1A01G197800 chr5A 96.899 129 4 0 489 617 18943756 18943628 2.400000e-52 217.0
24 TraesCS1A01G197800 chr5A 80.460 87 9 5 234 312 681080497 681080411 4.270000e-05 60.2
25 TraesCS1A01G197800 chr5A 79.310 87 10 5 234 312 681151984 681151898 2.000000e-03 54.7
26 TraesCS1A01G197800 chr4A 96.923 130 4 0 489 618 216442824 216442695 6.660000e-53 219.0
27 TraesCS1A01G197800 chr4B 96.183 131 5 0 486 616 387507509 387507639 8.620000e-52 215.0
28 TraesCS1A01G197800 chr4B 100.000 28 0 0 3393 3420 413832143 413832116 7.000000e-03 52.8
29 TraesCS1A01G197800 chr3A 93.706 143 7 2 489 630 584748652 584748793 3.100000e-51 213.0
30 TraesCS1A01G197800 chr2A 91.837 147 12 0 478 624 700970222 700970076 5.190000e-49 206.0
31 TraesCS1A01G197800 chr2B 79.048 105 13 7 234 331 234630083 234629981 3.300000e-06 63.9
32 TraesCS1A01G197800 chr7D 81.333 75 12 2 303 376 184095101 184095174 4.270000e-05 60.2
33 TraesCS1A01G197800 chr3B 78.070 114 12 10 234 337 819377839 819377729 4.270000e-05 60.2
34 TraesCS1A01G197800 chr3B 96.970 33 0 1 231 263 773564999 773565030 2.000000e-03 54.7
35 TraesCS1A01G197800 chr7B 100.000 29 0 0 3393 3421 145682386 145682414 2.000000e-03 54.7
36 TraesCS1A01G197800 chr2D 96.875 32 1 0 3381 3412 181601882 181601913 2.000000e-03 54.7
37 TraesCS1A01G197800 chr2D 100.000 29 0 0 235 263 546930475 546930503 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G197800 chr1A 355713594 355717553 3959 False 7313.000000 7313 100.000000 1 3960 1 chr1A.!!$F2 3959
1 TraesCS1A01G197800 chr1B 386158720 386162104 3384 False 1664.333333 3884 93.008667 3 3781 3 chr1B.!!$F1 3778
2 TraesCS1A01G197800 chr1D 284239221 284242341 3120 False 1489.666667 2804 92.758667 665 3671 3 chr1D.!!$F1 3006

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
317 318 0.240145 TACGAGCACCAGTGTCGAAG 59.760 55.0 21.22 5.15 37.46 3.79 F
1122 1124 0.102481 AATGGATCGGTCGACCTTCG 59.898 55.0 30.92 18.56 42.10 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1593 1614 0.677842 AGGGCTTCGTGTTTAGTCGT 59.322 50.0 0.00 0.0 0.00 4.34 R
3029 3254 0.605319 GTCGACCACATCAAAGGGCA 60.605 55.0 3.51 0.0 29.93 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.931005 GCTGTATGGCTTCGTAGTGC 59.069 55.000 0.00 0.00 0.00 4.40
52 53 1.726853 GACATCCTTTGTCGACAGGG 58.273 55.000 24.62 24.62 45.00 4.45
54 55 0.321564 CATCCTTTGTCGACAGGGCA 60.322 55.000 25.32 17.78 0.00 5.36
63 64 1.204941 GTCGACAGGGCAGTAATGACT 59.795 52.381 11.55 0.00 35.80 3.41
64 65 1.476891 TCGACAGGGCAGTAATGACTC 59.523 52.381 0.00 0.00 31.73 3.36
142 143 7.755582 AAAGTTACACAAAGCTCATTTTGTC 57.244 32.000 0.00 0.00 45.49 3.18
143 144 5.831997 AGTTACACAAAGCTCATTTTGTCC 58.168 37.500 0.00 0.00 45.49 4.02
144 145 5.594317 AGTTACACAAAGCTCATTTTGTCCT 59.406 36.000 0.00 0.00 45.49 3.85
145 146 4.311816 ACACAAAGCTCATTTTGTCCTG 57.688 40.909 0.00 0.00 45.49 3.86
146 147 3.054878 CACAAAGCTCATTTTGTCCTGC 58.945 45.455 0.00 0.00 45.49 4.85
147 148 2.287788 ACAAAGCTCATTTTGTCCTGCG 60.288 45.455 0.00 0.00 45.49 5.18
148 149 1.609208 AAGCTCATTTTGTCCTGCGT 58.391 45.000 0.00 0.00 0.00 5.24
149 150 0.877071 AGCTCATTTTGTCCTGCGTG 59.123 50.000 0.00 0.00 0.00 5.34
150 151 0.730494 GCTCATTTTGTCCTGCGTGC 60.730 55.000 0.00 0.00 0.00 5.34
151 152 0.592637 CTCATTTTGTCCTGCGTGCA 59.407 50.000 0.00 0.00 0.00 4.57
152 153 1.001487 CTCATTTTGTCCTGCGTGCAA 60.001 47.619 0.00 0.00 0.00 4.08
153 154 1.612950 TCATTTTGTCCTGCGTGCAAT 59.387 42.857 0.00 0.00 0.00 3.56
154 155 2.035704 TCATTTTGTCCTGCGTGCAATT 59.964 40.909 0.00 0.00 0.00 2.32
155 156 2.593346 TTTTGTCCTGCGTGCAATTT 57.407 40.000 0.00 0.00 0.00 1.82
156 157 2.593346 TTTGTCCTGCGTGCAATTTT 57.407 40.000 0.00 0.00 0.00 1.82
157 158 2.593346 TTGTCCTGCGTGCAATTTTT 57.407 40.000 0.00 0.00 0.00 1.94
180 181 6.470557 TTAACACGGTACAAATGTAGAAGC 57.529 37.500 0.00 0.00 0.00 3.86
181 182 3.332034 ACACGGTACAAATGTAGAAGCC 58.668 45.455 0.00 0.00 0.00 4.35
182 183 2.676342 CACGGTACAAATGTAGAAGCCC 59.324 50.000 0.00 0.00 0.00 5.19
183 184 2.303600 ACGGTACAAATGTAGAAGCCCA 59.696 45.455 0.00 0.00 0.00 5.36
184 185 2.676342 CGGTACAAATGTAGAAGCCCAC 59.324 50.000 0.00 0.00 0.00 4.61
185 186 3.681593 GGTACAAATGTAGAAGCCCACA 58.318 45.455 0.00 0.00 0.00 4.17
186 187 4.270008 GGTACAAATGTAGAAGCCCACAT 58.730 43.478 0.00 0.00 36.96 3.21
187 188 5.433526 GGTACAAATGTAGAAGCCCACATA 58.566 41.667 0.00 0.00 34.32 2.29
188 189 5.296035 GGTACAAATGTAGAAGCCCACATAC 59.704 44.000 0.00 0.00 34.32 2.39
189 190 4.917385 ACAAATGTAGAAGCCCACATACA 58.083 39.130 0.00 0.00 34.32 2.29
190 191 4.700213 ACAAATGTAGAAGCCCACATACAC 59.300 41.667 0.00 0.00 34.32 2.90
191 192 4.568072 AATGTAGAAGCCCACATACACA 57.432 40.909 0.00 0.00 34.32 3.72
192 193 4.778213 ATGTAGAAGCCCACATACACAT 57.222 40.909 0.00 0.00 33.66 3.21
193 194 5.887214 ATGTAGAAGCCCACATACACATA 57.113 39.130 0.00 0.00 33.66 2.29
194 195 5.276461 TGTAGAAGCCCACATACACATAG 57.724 43.478 0.00 0.00 0.00 2.23
195 196 4.959839 TGTAGAAGCCCACATACACATAGA 59.040 41.667 0.00 0.00 0.00 1.98
196 197 5.602561 TGTAGAAGCCCACATACACATAGAT 59.397 40.000 0.00 0.00 0.00 1.98
197 198 6.780522 TGTAGAAGCCCACATACACATAGATA 59.219 38.462 0.00 0.00 0.00 1.98
198 199 6.102897 AGAAGCCCACATACACATAGATAC 57.897 41.667 0.00 0.00 0.00 2.24
199 200 5.602561 AGAAGCCCACATACACATAGATACA 59.397 40.000 0.00 0.00 0.00 2.29
200 201 5.215252 AGCCCACATACACATAGATACAC 57.785 43.478 0.00 0.00 0.00 2.90
201 202 4.901849 AGCCCACATACACATAGATACACT 59.098 41.667 0.00 0.00 0.00 3.55
202 203 5.366768 AGCCCACATACACATAGATACACTT 59.633 40.000 0.00 0.00 0.00 3.16
203 204 6.553476 AGCCCACATACACATAGATACACTTA 59.447 38.462 0.00 0.00 0.00 2.24
204 205 6.645415 GCCCACATACACATAGATACACTTAC 59.355 42.308 0.00 0.00 0.00 2.34
205 206 7.471539 GCCCACATACACATAGATACACTTACT 60.472 40.741 0.00 0.00 0.00 2.24
206 207 8.082852 CCCACATACACATAGATACACTTACTC 58.917 40.741 0.00 0.00 0.00 2.59
207 208 8.851145 CCACATACACATAGATACACTTACTCT 58.149 37.037 0.00 0.00 0.00 3.24
219 220 8.857098 AGATACACTTACTCTTAAGAACACACA 58.143 33.333 6.63 0.00 37.49 3.72
220 221 8.813643 ATACACTTACTCTTAAGAACACACAC 57.186 34.615 6.63 0.00 37.49 3.82
221 222 5.747197 ACACTTACTCTTAAGAACACACACG 59.253 40.000 6.63 0.00 37.49 4.49
222 223 5.747197 CACTTACTCTTAAGAACACACACGT 59.253 40.000 6.63 1.09 37.49 4.49
223 224 5.747197 ACTTACTCTTAAGAACACACACGTG 59.253 40.000 15.48 15.48 41.92 4.49
224 225 5.332355 CTTACTCTTAAGAACACACACGTGC 60.332 44.000 17.22 0.00 40.90 5.34
225 226 7.656837 CTTACTCTTAAGAACACACACGTGCA 61.657 42.308 17.22 0.00 40.90 4.57
226 227 9.542173 CTTACTCTTAAGAACACACACGTGCAC 62.542 44.444 17.22 6.82 40.90 4.57
231 232 2.708865 CACACACGTGCACACCTG 59.291 61.111 17.22 10.89 36.06 4.00
232 233 2.106074 CACACACGTGCACACCTGT 61.106 57.895 17.22 11.56 36.06 4.00
233 234 1.813753 ACACACGTGCACACCTGTC 60.814 57.895 17.22 0.00 30.16 3.51
234 235 1.521457 CACACGTGCACACCTGTCT 60.521 57.895 17.22 0.00 30.16 3.41
235 236 1.089481 CACACGTGCACACCTGTCTT 61.089 55.000 17.22 0.00 30.16 3.01
236 237 0.810031 ACACGTGCACACCTGTCTTC 60.810 55.000 17.22 0.00 0.00 2.87
237 238 1.591594 ACGTGCACACCTGTCTTCG 60.592 57.895 18.64 0.60 0.00 3.79
238 239 1.591594 CGTGCACACCTGTCTTCGT 60.592 57.895 18.64 0.00 0.00 3.85
239 240 0.318360 CGTGCACACCTGTCTTCGTA 60.318 55.000 18.64 0.00 0.00 3.43
240 241 1.419374 GTGCACACCTGTCTTCGTAG 58.581 55.000 13.17 0.00 0.00 3.51
241 242 1.037493 TGCACACCTGTCTTCGTAGT 58.963 50.000 0.00 0.00 0.00 2.73
242 243 1.000607 TGCACACCTGTCTTCGTAGTC 60.001 52.381 0.00 0.00 0.00 2.59
243 244 1.965083 CACACCTGTCTTCGTAGTCG 58.035 55.000 0.00 0.00 38.55 4.18
244 245 1.534163 CACACCTGTCTTCGTAGTCGA 59.466 52.381 0.00 0.00 44.66 4.20
245 246 1.534595 ACACCTGTCTTCGTAGTCGAC 59.465 52.381 7.70 7.70 46.03 4.20
265 266 1.553706 GGGAACGTCTCCTCCTAACA 58.446 55.000 13.94 0.00 44.68 2.41
266 267 2.108970 GGGAACGTCTCCTCCTAACAT 58.891 52.381 13.94 0.00 44.68 2.71
267 268 2.101082 GGGAACGTCTCCTCCTAACATC 59.899 54.545 13.94 0.00 44.68 3.06
268 269 2.758979 GGAACGTCTCCTCCTAACATCA 59.241 50.000 8.87 0.00 41.61 3.07
269 270 3.429135 GGAACGTCTCCTCCTAACATCAC 60.429 52.174 8.87 0.00 41.61 3.06
270 271 1.743958 ACGTCTCCTCCTAACATCACG 59.256 52.381 0.00 0.00 0.00 4.35
271 272 2.014857 CGTCTCCTCCTAACATCACGA 58.985 52.381 0.00 0.00 0.00 4.35
272 273 2.032302 CGTCTCCTCCTAACATCACGAG 59.968 54.545 0.00 0.00 0.00 4.18
273 274 3.280295 GTCTCCTCCTAACATCACGAGA 58.720 50.000 0.00 0.00 0.00 4.04
274 275 3.695060 GTCTCCTCCTAACATCACGAGAA 59.305 47.826 0.00 0.00 0.00 2.87
275 276 4.158025 GTCTCCTCCTAACATCACGAGAAA 59.842 45.833 0.00 0.00 0.00 2.52
276 277 4.399618 TCTCCTCCTAACATCACGAGAAAG 59.600 45.833 0.00 0.00 0.00 2.62
277 278 4.087182 TCCTCCTAACATCACGAGAAAGT 58.913 43.478 0.00 0.00 0.00 2.66
278 279 4.158025 TCCTCCTAACATCACGAGAAAGTC 59.842 45.833 0.00 0.00 0.00 3.01
279 280 4.158764 CCTCCTAACATCACGAGAAAGTCT 59.841 45.833 0.00 0.00 0.00 3.24
280 281 5.312120 TCCTAACATCACGAGAAAGTCTC 57.688 43.478 0.00 0.00 40.06 3.36
281 282 5.010933 TCCTAACATCACGAGAAAGTCTCT 58.989 41.667 3.90 0.00 41.26 3.10
282 283 6.178324 TCCTAACATCACGAGAAAGTCTCTA 58.822 40.000 3.90 0.00 41.26 2.43
283 284 6.657966 TCCTAACATCACGAGAAAGTCTCTAA 59.342 38.462 3.90 0.00 41.26 2.10
284 285 7.339721 TCCTAACATCACGAGAAAGTCTCTAAT 59.660 37.037 3.90 0.00 41.26 1.73
285 286 8.622157 CCTAACATCACGAGAAAGTCTCTAATA 58.378 37.037 3.90 0.00 41.26 0.98
288 289 9.877178 AACATCACGAGAAAGTCTCTAATAAAT 57.123 29.630 3.90 0.00 41.26 1.40
314 315 1.710013 AAATACGAGCACCAGTGTCG 58.290 50.000 16.02 16.02 38.81 4.35
315 316 0.885879 AATACGAGCACCAGTGTCGA 59.114 50.000 21.22 10.83 37.46 4.20
316 317 0.885879 ATACGAGCACCAGTGTCGAA 59.114 50.000 21.22 0.00 37.46 3.71
317 318 0.240145 TACGAGCACCAGTGTCGAAG 59.760 55.000 21.22 5.15 37.46 3.79
318 319 1.007271 CGAGCACCAGTGTCGAAGT 60.007 57.895 13.77 0.00 36.76 3.01
319 320 0.597637 CGAGCACCAGTGTCGAAGTT 60.598 55.000 13.77 0.00 36.76 2.66
320 321 1.583054 GAGCACCAGTGTCGAAGTTT 58.417 50.000 0.00 0.00 0.00 2.66
321 322 2.750948 GAGCACCAGTGTCGAAGTTTA 58.249 47.619 0.00 0.00 0.00 2.01
322 323 2.731976 GAGCACCAGTGTCGAAGTTTAG 59.268 50.000 0.00 0.00 0.00 1.85
323 324 1.798813 GCACCAGTGTCGAAGTTTAGG 59.201 52.381 0.00 0.00 0.00 2.69
350 351 2.052782 ACTTGGTGGACTGGTTTCAC 57.947 50.000 0.00 0.00 0.00 3.18
354 355 0.393820 GGTGGACTGGTTTCACCGTA 59.606 55.000 9.90 0.00 42.58 4.02
395 396 4.577283 AGCTACTCTCAATTCTCGTCCTAC 59.423 45.833 0.00 0.00 0.00 3.18
397 398 3.970842 ACTCTCAATTCTCGTCCTACCT 58.029 45.455 0.00 0.00 0.00 3.08
398 399 3.697045 ACTCTCAATTCTCGTCCTACCTG 59.303 47.826 0.00 0.00 0.00 4.00
399 400 2.427453 TCTCAATTCTCGTCCTACCTGC 59.573 50.000 0.00 0.00 0.00 4.85
400 401 1.134367 TCAATTCTCGTCCTACCTGCG 59.866 52.381 0.00 0.00 0.00 5.18
414 416 1.102154 CCTGCGGAATTGGTTATGCA 58.898 50.000 0.00 0.00 0.00 3.96
415 417 1.682854 CCTGCGGAATTGGTTATGCAT 59.317 47.619 3.79 3.79 30.24 3.96
418 420 4.022068 CCTGCGGAATTGGTTATGCATAAT 60.022 41.667 21.52 5.83 30.24 1.28
420 422 6.294453 CCTGCGGAATTGGTTATGCATAATTA 60.294 38.462 21.52 11.24 30.24 1.40
423 425 8.240682 TGCGGAATTGGTTATGCATAATTATAC 58.759 33.333 21.52 9.44 0.00 1.47
476 478 4.929819 TGGCCTTTTCTTTTAGGTTGTC 57.070 40.909 3.32 0.00 33.91 3.18
480 482 6.110033 GGCCTTTTCTTTTAGGTTGTCAAAA 58.890 36.000 0.00 0.00 33.91 2.44
481 483 6.765989 GGCCTTTTCTTTTAGGTTGTCAAAAT 59.234 34.615 0.00 0.00 33.91 1.82
499 501 9.096823 TGTCAAAATAATATATACTCCCTCCGT 57.903 33.333 0.00 0.00 0.00 4.69
500 502 9.939802 GTCAAAATAATATATACTCCCTCCGTT 57.060 33.333 0.00 0.00 0.00 4.44
502 504 9.379791 CAAAATAATATATACTCCCTCCGTTCC 57.620 37.037 0.00 0.00 0.00 3.62
503 505 6.956202 ATAATATATACTCCCTCCGTTCCG 57.044 41.667 0.00 0.00 0.00 4.30
504 506 2.965671 ATATACTCCCTCCGTTCCGA 57.034 50.000 0.00 0.00 0.00 4.55
505 507 2.734755 TATACTCCCTCCGTTCCGAA 57.265 50.000 0.00 0.00 0.00 4.30
506 508 2.083628 ATACTCCCTCCGTTCCGAAT 57.916 50.000 0.00 0.00 0.00 3.34
507 509 1.856629 TACTCCCTCCGTTCCGAATT 58.143 50.000 0.00 0.00 0.00 2.17
508 510 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
509 511 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
510 512 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
511 513 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
512 514 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
513 515 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
514 516 3.332034 CCTCCGTTCCGAATTACTTGTT 58.668 45.455 0.00 0.00 0.00 2.83
515 517 3.749609 CCTCCGTTCCGAATTACTTGTTT 59.250 43.478 0.00 0.00 0.00 2.83
516 518 4.214758 CCTCCGTTCCGAATTACTTGTTTT 59.785 41.667 0.00 0.00 0.00 2.43
517 519 5.098218 TCCGTTCCGAATTACTTGTTTTG 57.902 39.130 0.00 0.00 0.00 2.44
518 520 4.023878 TCCGTTCCGAATTACTTGTTTTGG 60.024 41.667 0.00 0.00 0.00 3.28
519 521 4.023878 CCGTTCCGAATTACTTGTTTTGGA 60.024 41.667 0.00 0.00 34.28 3.53
520 522 5.335348 CCGTTCCGAATTACTTGTTTTGGAT 60.335 40.000 0.00 0.00 35.73 3.41
521 523 6.146898 CGTTCCGAATTACTTGTTTTGGATT 58.853 36.000 0.00 0.00 35.73 3.01
522 524 6.639279 CGTTCCGAATTACTTGTTTTGGATTT 59.361 34.615 0.00 0.00 35.73 2.17
523 525 7.358023 CGTTCCGAATTACTTGTTTTGGATTTG 60.358 37.037 0.00 0.00 35.73 2.32
524 526 7.045126 TCCGAATTACTTGTTTTGGATTTGT 57.955 32.000 0.00 0.00 31.71 2.83
525 527 7.142680 TCCGAATTACTTGTTTTGGATTTGTC 58.857 34.615 0.00 0.00 31.71 3.18
526 528 7.013846 TCCGAATTACTTGTTTTGGATTTGTCT 59.986 33.333 0.00 0.00 31.71 3.41
527 529 8.293867 CCGAATTACTTGTTTTGGATTTGTCTA 58.706 33.333 0.00 0.00 0.00 2.59
528 530 9.329913 CGAATTACTTGTTTTGGATTTGTCTAG 57.670 33.333 0.00 0.00 0.00 2.43
533 535 8.029642 ACTTGTTTTGGATTTGTCTAGATACG 57.970 34.615 0.00 0.00 0.00 3.06
534 536 6.978343 TGTTTTGGATTTGTCTAGATACGG 57.022 37.500 0.00 0.00 0.00 4.02
535 537 6.703319 TGTTTTGGATTTGTCTAGATACGGA 58.297 36.000 0.00 0.00 0.00 4.69
536 538 7.335627 TGTTTTGGATTTGTCTAGATACGGAT 58.664 34.615 0.00 0.00 0.00 4.18
537 539 7.279981 TGTTTTGGATTTGTCTAGATACGGATG 59.720 37.037 0.00 0.00 0.00 3.51
538 540 6.479972 TTGGATTTGTCTAGATACGGATGT 57.520 37.500 0.00 0.00 0.00 3.06
539 541 7.591421 TTGGATTTGTCTAGATACGGATGTA 57.409 36.000 0.00 0.00 34.45 2.29
540 542 7.776618 TGGATTTGTCTAGATACGGATGTAT 57.223 36.000 0.00 0.00 43.97 2.29
556 558 8.466617 ACGGATGTATCTAGACTCATTTTAGT 57.533 34.615 11.25 7.70 0.00 2.24
557 559 8.353684 ACGGATGTATCTAGACTCATTTTAGTG 58.646 37.037 11.25 3.85 0.00 2.74
558 560 7.327275 CGGATGTATCTAGACTCATTTTAGTGC 59.673 40.741 11.25 0.00 0.00 4.40
559 561 8.364142 GGATGTATCTAGACTCATTTTAGTGCT 58.636 37.037 11.25 0.00 0.00 4.40
562 564 9.628500 TGTATCTAGACTCATTTTAGTGCTAGA 57.372 33.333 0.00 0.00 38.76 2.43
566 568 9.069082 TCTAGACTCATTTTAGTGCTAGATACC 57.931 37.037 0.00 0.00 34.69 2.73
567 569 7.906199 AGACTCATTTTAGTGCTAGATACCT 57.094 36.000 0.00 0.00 0.00 3.08
568 570 8.312669 AGACTCATTTTAGTGCTAGATACCTT 57.687 34.615 0.00 0.00 0.00 3.50
569 571 8.417884 AGACTCATTTTAGTGCTAGATACCTTC 58.582 37.037 0.00 0.00 0.00 3.46
570 572 8.079211 ACTCATTTTAGTGCTAGATACCTTCA 57.921 34.615 0.00 0.00 0.00 3.02
571 573 8.709308 ACTCATTTTAGTGCTAGATACCTTCAT 58.291 33.333 0.00 0.00 0.00 2.57
590 592 9.606631 ACCTTCATATCTAGACAAATTCAAGAC 57.393 33.333 0.00 0.00 0.00 3.01
591 593 9.605275 CCTTCATATCTAGACAAATTCAAGACA 57.395 33.333 0.00 0.00 0.00 3.41
600 602 9.746711 CTAGACAAATTCAAGACAAGTAATTCG 57.253 33.333 0.00 0.00 0.00 3.34
601 603 7.584987 AGACAAATTCAAGACAAGTAATTCGG 58.415 34.615 0.00 0.00 0.00 4.30
602 604 7.444183 AGACAAATTCAAGACAAGTAATTCGGA 59.556 33.333 0.00 0.00 0.00 4.55
603 605 7.936584 ACAAATTCAAGACAAGTAATTCGGAA 58.063 30.769 0.00 0.00 0.00 4.30
604 606 7.860872 ACAAATTCAAGACAAGTAATTCGGAAC 59.139 33.333 0.00 0.00 0.00 3.62
622 624 5.349061 GGAACGGAGGGAGTATTTTTAGA 57.651 43.478 0.00 0.00 0.00 2.10
623 625 5.737860 GGAACGGAGGGAGTATTTTTAGAA 58.262 41.667 0.00 0.00 0.00 2.10
624 626 6.354938 GGAACGGAGGGAGTATTTTTAGAAT 58.645 40.000 0.00 0.00 0.00 2.40
625 627 6.482641 GGAACGGAGGGAGTATTTTTAGAATC 59.517 42.308 0.00 0.00 0.00 2.52
626 628 6.555463 ACGGAGGGAGTATTTTTAGAATCA 57.445 37.500 0.00 0.00 0.00 2.57
627 629 6.583562 ACGGAGGGAGTATTTTTAGAATCAG 58.416 40.000 0.00 0.00 0.00 2.90
628 630 6.156429 ACGGAGGGAGTATTTTTAGAATCAGT 59.844 38.462 0.00 0.00 0.00 3.41
629 631 7.048512 CGGAGGGAGTATTTTTAGAATCAGTT 58.951 38.462 0.00 0.00 0.00 3.16
630 632 8.202137 CGGAGGGAGTATTTTTAGAATCAGTTA 58.798 37.037 0.00 0.00 0.00 2.24
631 633 9.901172 GGAGGGAGTATTTTTAGAATCAGTTAA 57.099 33.333 0.00 0.00 0.00 2.01
650 652 9.847224 TCAGTTAAAGAAAAAGGTGATACTTCT 57.153 29.630 0.00 0.00 0.00 2.85
652 654 9.286170 AGTTAAAGAAAAAGGTGATACTTCTCC 57.714 33.333 0.00 0.00 36.04 3.71
653 655 9.063615 GTTAAAGAAAAAGGTGATACTTCTCCA 57.936 33.333 0.00 0.00 37.87 3.86
654 656 9.635404 TTAAAGAAAAAGGTGATACTTCTCCAA 57.365 29.630 0.00 0.00 37.87 3.53
655 657 7.511959 AAGAAAAAGGTGATACTTCTCCAAC 57.488 36.000 0.00 0.00 37.87 3.77
656 658 6.004574 AGAAAAAGGTGATACTTCTCCAACC 58.995 40.000 0.00 0.00 37.87 3.77
657 659 4.302559 AAAGGTGATACTTCTCCAACCC 57.697 45.455 0.00 0.00 37.87 4.11
658 660 2.915869 AGGTGATACTTCTCCAACCCA 58.084 47.619 0.00 0.00 37.87 4.51
659 661 2.840651 AGGTGATACTTCTCCAACCCAG 59.159 50.000 0.00 0.00 37.87 4.45
660 662 2.572104 GGTGATACTTCTCCAACCCAGT 59.428 50.000 0.00 0.00 35.89 4.00
661 663 3.009143 GGTGATACTTCTCCAACCCAGTT 59.991 47.826 0.00 0.00 35.89 3.16
662 664 4.003648 GTGATACTTCTCCAACCCAGTTG 58.996 47.826 0.40 0.40 42.49 3.16
663 665 2.561478 TACTTCTCCAACCCAGTTGC 57.439 50.000 1.88 0.00 41.62 4.17
772 774 1.819632 CTTGGGCATCCGCTACCAC 60.820 63.158 0.00 0.00 38.60 4.16
810 812 0.689080 TCAGCATCTCCACCTCCTCC 60.689 60.000 0.00 0.00 0.00 4.30
856 858 0.456995 CGACTTCGACCAGAGGAAGC 60.457 60.000 0.00 0.00 42.62 3.86
892 894 2.675423 CGGGGCCGATCGATCCTA 60.675 66.667 18.66 0.00 42.83 2.94
912 914 2.279851 CCGAACCTCACACACGCA 60.280 61.111 0.00 0.00 0.00 5.24
1038 1040 2.746362 CAAGCTCTTCGATGCCTTCTTT 59.254 45.455 0.00 0.00 0.00 2.52
1122 1124 0.102481 AATGGATCGGTCGACCTTCG 59.898 55.000 30.92 18.56 42.10 3.79
1205 1217 7.954835 TGTCTGATTTGATTTGTTTTCATCCT 58.045 30.769 0.00 0.00 0.00 3.24
1206 1218 7.868922 TGTCTGATTTGATTTGTTTTCATCCTG 59.131 33.333 0.00 0.00 0.00 3.86
1207 1219 8.084073 GTCTGATTTGATTTGTTTTCATCCTGA 58.916 33.333 0.00 0.00 0.00 3.86
1245 1257 5.605534 TGAGGAGCTAGCAGATTTTACATC 58.394 41.667 18.83 0.85 0.00 3.06
1259 1271 8.127327 CAGATTTTACATCTCAACCATGTGATC 58.873 37.037 0.00 0.00 37.61 2.92
1322 1335 5.411361 TGTTAGTTGCTATTTTCATCGCACT 59.589 36.000 0.00 0.00 31.04 4.40
1331 1344 6.347644 GCTATTTTCATCGCACTATGTATGCA 60.348 38.462 0.00 0.00 43.57 3.96
1332 1345 6.564709 ATTTTCATCGCACTATGTATGCAT 57.435 33.333 3.79 3.79 43.57 3.96
1333 1346 7.671495 ATTTTCATCGCACTATGTATGCATA 57.329 32.000 1.16 1.16 43.57 3.14
1334 1347 6.466308 TTTCATCGCACTATGTATGCATAC 57.534 37.500 26.72 26.72 43.57 2.39
1335 1348 4.494484 TCATCGCACTATGTATGCATACC 58.506 43.478 29.36 14.58 43.57 2.73
1336 1349 4.021544 TCATCGCACTATGTATGCATACCA 60.022 41.667 29.36 19.28 43.57 3.25
1337 1350 4.535526 TCGCACTATGTATGCATACCAT 57.464 40.909 29.36 23.47 43.57 3.55
1338 1351 4.494484 TCGCACTATGTATGCATACCATC 58.506 43.478 29.36 13.89 43.57 3.51
1339 1352 3.618594 CGCACTATGTATGCATACCATCC 59.381 47.826 29.36 14.24 43.57 3.51
1340 1353 4.578871 GCACTATGTATGCATACCATCCA 58.421 43.478 29.36 14.23 42.88 3.41
1341 1354 5.188434 GCACTATGTATGCATACCATCCAT 58.812 41.667 29.36 19.41 42.88 3.41
1342 1355 5.065602 GCACTATGTATGCATACCATCCATG 59.934 44.000 29.36 20.63 42.88 3.66
1343 1356 6.175471 CACTATGTATGCATACCATCCATGT 58.825 40.000 29.36 16.70 32.34 3.21
1344 1357 7.330262 CACTATGTATGCATACCATCCATGTA 58.670 38.462 29.36 11.49 32.34 2.29
1345 1358 7.278646 CACTATGTATGCATACCATCCATGTAC 59.721 40.741 29.36 7.54 32.34 2.90
1346 1359 4.905429 TGTATGCATACCATCCATGTACC 58.095 43.478 29.36 4.99 35.34 3.34
1347 1360 4.349342 TGTATGCATACCATCCATGTACCA 59.651 41.667 29.36 7.44 35.34 3.25
1380 1401 1.078143 AGGGCACGAAGATCCAAGC 60.078 57.895 0.00 0.00 0.00 4.01
1552 1573 1.589414 ACCTGCCTGCCTATCTCTTT 58.411 50.000 0.00 0.00 0.00 2.52
1581 1602 1.812571 ACTAATTTTGGGCTCGTGCAG 59.187 47.619 12.07 0.00 41.91 4.41
1593 1614 2.068519 CTCGTGCAGTGTGCTTTCATA 58.931 47.619 0.00 0.00 45.31 2.15
1628 1649 3.944087 AGCCCTTGAACTACTTTGCTAG 58.056 45.455 0.00 0.00 0.00 3.42
1636 1657 7.606456 CCTTGAACTACTTTGCTAGTTAATCCA 59.394 37.037 0.00 0.00 37.13 3.41
1818 1839 7.583401 TGTTGTTTCGTTGTATTTTAAGTAGCG 59.417 33.333 0.00 0.00 0.00 4.26
1847 1872 9.078990 TCAACATAGGAACATATAGGACTACTG 57.921 37.037 0.00 0.00 0.00 2.74
1974 2006 9.553064 AAAGATGGTCAATTAGCTTATCTACTG 57.447 33.333 0.00 0.00 0.00 2.74
2012 2044 0.536260 AGTGCTCTTAGCTGCTGAGG 59.464 55.000 19.69 12.17 42.97 3.86
2092 2124 1.576272 ACACATCTCCCTACCTAGCCT 59.424 52.381 0.00 0.00 0.00 4.58
2107 2139 1.939980 AGCCTAGGACCTTCGTCTTT 58.060 50.000 14.75 0.00 39.15 2.52
2203 2235 3.681897 AGATGTAAGCTTTCTCTGTTGCG 59.318 43.478 3.20 0.00 0.00 4.85
2541 2765 9.995003 AGATTATAATTCTCTGCCTTAAGACTG 57.005 33.333 3.36 0.00 0.00 3.51
2542 2766 9.213799 GATTATAATTCTCTGCCTTAAGACTGG 57.786 37.037 3.36 0.00 0.00 4.00
2752 2976 6.483307 TCCTTGTATGCTTAATCATGTAGTGC 59.517 38.462 2.03 0.00 0.00 4.40
2767 2991 0.541392 AGTGCCTGTGTGTCTTGTGA 59.459 50.000 0.00 0.00 0.00 3.58
2803 3027 1.874129 TGACCCCGATGGAAGTATGT 58.126 50.000 0.00 0.00 38.00 2.29
2976 3200 3.195661 CGTAAAGAGTAACAGGGATGGC 58.804 50.000 0.00 0.00 0.00 4.40
3006 3230 4.507756 GTGTTTCTTGGCACCTCATTTTTC 59.492 41.667 0.00 0.00 0.00 2.29
3088 3313 0.105593 GATCCGCAAGAGGAGATGCA 59.894 55.000 0.00 0.00 44.55 3.96
3180 3406 7.990886 TGGGATGTAAATACTGATGTTTCTACC 59.009 37.037 0.00 0.00 0.00 3.18
3279 3506 4.513318 GGAATGACTAGCTAGAATGCCAAC 59.487 45.833 27.45 9.77 0.00 3.77
3410 3637 1.379044 GTACTCCCTCCGTCCCGAA 60.379 63.158 0.00 0.00 0.00 4.30
3417 3644 2.034124 CCCTCCGTCCCGAAATAAGTA 58.966 52.381 0.00 0.00 0.00 2.24
3436 3663 2.859165 ATCTCAAGCTTTTGGGACGA 57.141 45.000 0.00 0.00 33.69 4.20
3490 3718 3.409804 TTCCTCGGACCCCTACTATTT 57.590 47.619 0.00 0.00 0.00 1.40
3512 3741 2.625790 TGGAGTTGGGTAATGTTGTTGC 59.374 45.455 0.00 0.00 0.00 4.17
3513 3742 2.890945 GGAGTTGGGTAATGTTGTTGCT 59.109 45.455 0.00 0.00 0.00 3.91
3514 3743 3.305335 GGAGTTGGGTAATGTTGTTGCTG 60.305 47.826 0.00 0.00 0.00 4.41
3544 3773 3.953612 TGTTGGAGTCAGCAGAAACAAAT 59.046 39.130 0.00 0.00 30.61 2.32
3641 3871 9.684448 TTATCAGAAATATAAGAAGAGAGTGCG 57.316 33.333 0.00 0.00 0.00 5.34
3648 3878 2.861462 AGAAGAGAGTGCGATACTGC 57.139 50.000 0.00 0.00 40.53 4.40
3706 3936 0.468226 GTCCTGCATTATGGGACGGA 59.532 55.000 6.34 0.00 39.80 4.69
3735 3965 9.593134 GAGTAGAAATCAGAGTGTGAATATTGT 57.407 33.333 0.00 0.00 39.19 2.71
3737 3967 9.593134 GTAGAAATCAGAGTGTGAATATTGTCT 57.407 33.333 0.00 0.00 39.19 3.41
3741 3971 6.114187 TCAGAGTGTGAATATTGTCTGGTT 57.886 37.500 0.00 0.00 33.66 3.67
3742 3972 6.166279 TCAGAGTGTGAATATTGTCTGGTTC 58.834 40.000 0.00 0.00 33.66 3.62
3746 3976 4.092968 GTGTGAATATTGTCTGGTTCGGAC 59.907 45.833 0.00 0.27 39.93 4.79
3766 3996 0.036164 TTGTGCCTGAACCTATGCGT 59.964 50.000 0.00 0.00 0.00 5.24
3767 3997 0.673333 TGTGCCTGAACCTATGCGTG 60.673 55.000 0.00 0.00 0.00 5.34
3785 4015 4.506838 CGTGAGCTTTTGTATCACTAGC 57.493 45.455 0.00 0.00 40.92 3.42
3786 4016 3.307242 CGTGAGCTTTTGTATCACTAGCC 59.693 47.826 0.00 0.00 40.92 3.93
3787 4017 3.307242 GTGAGCTTTTGTATCACTAGCCG 59.693 47.826 0.00 0.00 40.14 5.52
3788 4018 2.280628 AGCTTTTGTATCACTAGCCGC 58.719 47.619 0.00 0.00 32.36 6.53
3789 4019 1.330829 GCTTTTGTATCACTAGCCGCC 59.669 52.381 0.00 0.00 0.00 6.13
3790 4020 1.593006 CTTTTGTATCACTAGCCGCCG 59.407 52.381 0.00 0.00 0.00 6.46
3791 4021 0.808453 TTTGTATCACTAGCCGCCGC 60.808 55.000 0.00 0.00 0.00 6.53
3792 4022 2.355956 GTATCACTAGCCGCCGCC 60.356 66.667 0.00 0.00 34.57 6.13
3793 4023 2.520982 TATCACTAGCCGCCGCCT 60.521 61.111 0.00 0.00 34.57 5.52
3794 4024 2.561956 TATCACTAGCCGCCGCCTC 61.562 63.158 0.00 0.00 34.57 4.70
3798 4028 4.467084 CTAGCCGCCGCCTCCAAA 62.467 66.667 0.00 0.00 34.57 3.28
3799 4029 3.969250 CTAGCCGCCGCCTCCAAAA 62.969 63.158 0.00 0.00 34.57 2.44
3800 4030 3.554696 TAGCCGCCGCCTCCAAAAA 62.555 57.895 0.00 0.00 34.57 1.94
3818 4048 2.498644 AAACCTAGCTTTCTGCCTCC 57.501 50.000 0.00 0.00 44.23 4.30
3819 4049 0.621082 AACCTAGCTTTCTGCCTCCC 59.379 55.000 0.00 0.00 44.23 4.30
3820 4050 0.547712 ACCTAGCTTTCTGCCTCCCA 60.548 55.000 0.00 0.00 44.23 4.37
3821 4051 0.107459 CCTAGCTTTCTGCCTCCCAC 60.107 60.000 0.00 0.00 44.23 4.61
3822 4052 0.107459 CTAGCTTTCTGCCTCCCACC 60.107 60.000 0.00 0.00 44.23 4.61
3823 4053 1.899437 TAGCTTTCTGCCTCCCACCG 61.899 60.000 0.00 0.00 44.23 4.94
3824 4054 2.045926 CTTTCTGCCTCCCACCGG 60.046 66.667 0.00 0.00 0.00 5.28
3861 4091 2.838225 CGTCTCCGGTGGCCCTAT 60.838 66.667 0.00 0.00 0.00 2.57
3862 4092 1.529948 CGTCTCCGGTGGCCCTATA 60.530 63.158 0.00 0.00 0.00 1.31
3863 4093 1.524863 CGTCTCCGGTGGCCCTATAG 61.525 65.000 0.00 0.00 0.00 1.31
3864 4094 1.533273 TCTCCGGTGGCCCTATAGC 60.533 63.158 0.00 0.00 0.00 2.97
3881 4111 3.083349 CCATGGAGGCGGAGTGGA 61.083 66.667 5.56 0.00 31.59 4.02
3882 4112 2.446848 CCATGGAGGCGGAGTGGAT 61.447 63.158 5.56 0.00 31.59 3.41
3883 4113 1.070445 CATGGAGGCGGAGTGGATC 59.930 63.158 0.00 0.00 0.00 3.36
3884 4114 1.074926 ATGGAGGCGGAGTGGATCT 60.075 57.895 0.00 0.00 0.00 2.75
3885 4115 1.118356 ATGGAGGCGGAGTGGATCTC 61.118 60.000 0.00 0.00 42.07 2.75
3886 4116 2.725008 GAGGCGGAGTGGATCTCG 59.275 66.667 0.00 0.00 43.60 4.04
3887 4117 2.835431 AGGCGGAGTGGATCTCGG 60.835 66.667 0.00 0.00 43.60 4.63
3890 4120 3.917760 CGGAGTGGATCTCGGCCC 61.918 72.222 0.00 0.00 43.60 5.80
3891 4121 2.444895 GGAGTGGATCTCGGCCCT 60.445 66.667 0.00 0.00 43.60 5.19
3892 4122 2.066999 GGAGTGGATCTCGGCCCTT 61.067 63.158 0.00 0.00 43.60 3.95
3893 4123 1.144936 GAGTGGATCTCGGCCCTTG 59.855 63.158 0.00 0.00 33.25 3.61
3894 4124 2.514824 GTGGATCTCGGCCCTTGC 60.515 66.667 0.00 0.00 0.00 4.01
3924 4154 6.782082 GAGGGCTCCATTTTTAGATCTTTT 57.218 37.500 0.00 0.00 0.00 2.27
3925 4155 7.175347 GAGGGCTCCATTTTTAGATCTTTTT 57.825 36.000 0.00 0.00 0.00 1.94
3946 4176 6.887626 TTTTCGAGCTTTATTAGGGTTTGT 57.112 33.333 0.00 0.00 0.00 2.83
3947 4177 5.873179 TTCGAGCTTTATTAGGGTTTGTG 57.127 39.130 0.00 0.00 0.00 3.33
3948 4178 4.901868 TCGAGCTTTATTAGGGTTTGTGT 58.098 39.130 0.00 0.00 0.00 3.72
3949 4179 4.933400 TCGAGCTTTATTAGGGTTTGTGTC 59.067 41.667 0.00 0.00 0.00 3.67
3950 4180 4.094442 CGAGCTTTATTAGGGTTTGTGTCC 59.906 45.833 0.00 0.00 0.00 4.02
3951 4181 5.254115 GAGCTTTATTAGGGTTTGTGTCCT 58.746 41.667 0.00 0.00 37.18 3.85
3952 4182 5.010282 AGCTTTATTAGGGTTTGTGTCCTG 58.990 41.667 0.00 0.00 34.75 3.86
3953 4183 4.380550 GCTTTATTAGGGTTTGTGTCCTGC 60.381 45.833 0.00 0.00 34.75 4.85
3954 4184 4.650972 TTATTAGGGTTTGTGTCCTGCT 57.349 40.909 0.00 0.00 34.75 4.24
3955 4185 2.561478 TTAGGGTTTGTGTCCTGCTC 57.439 50.000 0.00 0.00 34.75 4.26
3956 4186 1.429930 TAGGGTTTGTGTCCTGCTCA 58.570 50.000 0.00 0.00 34.75 4.26
3957 4187 0.109342 AGGGTTTGTGTCCTGCTCAG 59.891 55.000 0.00 0.00 31.11 3.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.931005 GCACTACGAAGCCATACAGC 59.069 55.000 0.00 0.00 0.00 4.40
1 2 2.464865 GAGCACTACGAAGCCATACAG 58.535 52.381 0.00 0.00 0.00 2.74
119 120 6.096846 AGGACAAAATGAGCTTTGTGTAACTT 59.903 34.615 6.24 0.00 46.84 2.66
120 121 5.594317 AGGACAAAATGAGCTTTGTGTAACT 59.406 36.000 6.24 0.41 46.84 2.24
121 122 5.687285 CAGGACAAAATGAGCTTTGTGTAAC 59.313 40.000 6.24 0.00 46.84 2.50
122 123 5.735922 GCAGGACAAAATGAGCTTTGTGTAA 60.736 40.000 6.24 0.00 46.84 2.41
123 124 4.261572 GCAGGACAAAATGAGCTTTGTGTA 60.262 41.667 6.24 0.00 46.84 2.90
124 125 3.491447 GCAGGACAAAATGAGCTTTGTGT 60.491 43.478 6.24 0.00 46.84 3.72
125 126 3.054878 GCAGGACAAAATGAGCTTTGTG 58.945 45.455 6.24 0.00 46.84 3.33
127 128 2.287788 ACGCAGGACAAAATGAGCTTTG 60.288 45.455 0.00 0.00 41.24 2.77
128 129 1.956477 ACGCAGGACAAAATGAGCTTT 59.044 42.857 0.00 0.00 0.00 3.51
129 130 1.267806 CACGCAGGACAAAATGAGCTT 59.732 47.619 0.00 0.00 0.00 3.74
130 131 0.877071 CACGCAGGACAAAATGAGCT 59.123 50.000 0.00 0.00 0.00 4.09
131 132 0.730494 GCACGCAGGACAAAATGAGC 60.730 55.000 0.00 0.00 0.00 4.26
132 133 0.592637 TGCACGCAGGACAAAATGAG 59.407 50.000 0.00 0.00 0.00 2.90
133 134 1.028130 TTGCACGCAGGACAAAATGA 58.972 45.000 0.00 0.00 0.00 2.57
134 135 2.068837 ATTGCACGCAGGACAAAATG 57.931 45.000 0.00 0.00 0.00 2.32
135 136 2.818130 AATTGCACGCAGGACAAAAT 57.182 40.000 0.00 0.00 0.00 1.82
136 137 2.593346 AAATTGCACGCAGGACAAAA 57.407 40.000 0.00 0.00 0.00 2.44
137 138 2.593346 AAAATTGCACGCAGGACAAA 57.407 40.000 0.00 0.00 0.00 2.83
138 139 2.593346 AAAAATTGCACGCAGGACAA 57.407 40.000 0.00 0.00 0.00 3.18
154 155 7.856894 GCTTCTACATTTGTACCGTGTTAAAAA 59.143 33.333 0.00 0.00 0.00 1.94
155 156 7.354257 GCTTCTACATTTGTACCGTGTTAAAA 58.646 34.615 0.00 0.00 0.00 1.52
156 157 6.073112 GGCTTCTACATTTGTACCGTGTTAAA 60.073 38.462 0.00 0.00 0.00 1.52
157 158 5.409214 GGCTTCTACATTTGTACCGTGTTAA 59.591 40.000 0.00 0.00 0.00 2.01
158 159 4.931002 GGCTTCTACATTTGTACCGTGTTA 59.069 41.667 0.00 0.00 0.00 2.41
159 160 3.749609 GGCTTCTACATTTGTACCGTGTT 59.250 43.478 0.00 0.00 0.00 3.32
160 161 3.332034 GGCTTCTACATTTGTACCGTGT 58.668 45.455 0.00 0.00 0.00 4.49
161 162 2.676342 GGGCTTCTACATTTGTACCGTG 59.324 50.000 0.00 0.00 0.00 4.94
162 163 2.303600 TGGGCTTCTACATTTGTACCGT 59.696 45.455 0.00 0.00 0.00 4.83
163 164 2.676342 GTGGGCTTCTACATTTGTACCG 59.324 50.000 0.00 0.00 0.00 4.02
164 165 3.681593 TGTGGGCTTCTACATTTGTACC 58.318 45.455 0.00 0.00 0.00 3.34
165 166 5.878116 TGTATGTGGGCTTCTACATTTGTAC 59.122 40.000 1.04 0.00 38.41 2.90
166 167 5.878116 GTGTATGTGGGCTTCTACATTTGTA 59.122 40.000 1.04 0.00 38.41 2.41
167 168 4.700213 GTGTATGTGGGCTTCTACATTTGT 59.300 41.667 1.04 0.00 38.41 2.83
168 169 4.699735 TGTGTATGTGGGCTTCTACATTTG 59.300 41.667 1.04 0.00 38.41 2.32
169 170 4.917385 TGTGTATGTGGGCTTCTACATTT 58.083 39.130 1.04 0.00 38.41 2.32
170 171 4.568072 TGTGTATGTGGGCTTCTACATT 57.432 40.909 1.04 0.00 38.41 2.71
171 172 4.778213 ATGTGTATGTGGGCTTCTACAT 57.222 40.909 0.00 0.00 40.39 2.29
172 173 4.959839 TCTATGTGTATGTGGGCTTCTACA 59.040 41.667 0.00 0.00 0.00 2.74
173 174 5.531122 TCTATGTGTATGTGGGCTTCTAC 57.469 43.478 0.00 0.00 0.00 2.59
174 175 6.780522 TGTATCTATGTGTATGTGGGCTTCTA 59.219 38.462 0.00 0.00 0.00 2.10
175 176 5.602561 TGTATCTATGTGTATGTGGGCTTCT 59.397 40.000 0.00 0.00 0.00 2.85
176 177 5.696724 GTGTATCTATGTGTATGTGGGCTTC 59.303 44.000 0.00 0.00 0.00 3.86
177 178 5.366768 AGTGTATCTATGTGTATGTGGGCTT 59.633 40.000 0.00 0.00 0.00 4.35
178 179 4.901849 AGTGTATCTATGTGTATGTGGGCT 59.098 41.667 0.00 0.00 0.00 5.19
179 180 5.215252 AGTGTATCTATGTGTATGTGGGC 57.785 43.478 0.00 0.00 0.00 5.36
180 181 7.952671 AGTAAGTGTATCTATGTGTATGTGGG 58.047 38.462 0.00 0.00 0.00 4.61
181 182 8.851145 AGAGTAAGTGTATCTATGTGTATGTGG 58.149 37.037 0.00 0.00 0.00 4.17
193 194 8.857098 TGTGTGTTCTTAAGAGTAAGTGTATCT 58.143 33.333 5.12 0.00 38.33 1.98
194 195 8.913656 GTGTGTGTTCTTAAGAGTAAGTGTATC 58.086 37.037 5.12 0.00 38.33 2.24
195 196 7.594015 CGTGTGTGTTCTTAAGAGTAAGTGTAT 59.406 37.037 5.12 0.00 38.33 2.29
196 197 6.914215 CGTGTGTGTTCTTAAGAGTAAGTGTA 59.086 38.462 5.12 0.00 38.33 2.90
197 198 5.747197 CGTGTGTGTTCTTAAGAGTAAGTGT 59.253 40.000 5.12 0.00 38.33 3.55
198 199 5.747197 ACGTGTGTGTTCTTAAGAGTAAGTG 59.253 40.000 5.12 0.00 38.33 3.16
199 200 5.747197 CACGTGTGTGTTCTTAAGAGTAAGT 59.253 40.000 7.58 0.00 41.34 2.24
200 201 6.199043 CACGTGTGTGTTCTTAAGAGTAAG 57.801 41.667 7.58 0.00 41.34 2.34
219 220 1.591594 CGAAGACAGGTGTGCACGT 60.592 57.895 13.13 3.25 0.00 4.49
220 221 0.318360 TACGAAGACAGGTGTGCACG 60.318 55.000 13.13 0.00 0.00 5.34
221 222 1.269621 ACTACGAAGACAGGTGTGCAC 60.270 52.381 10.75 10.75 0.00 4.57
222 223 1.000607 GACTACGAAGACAGGTGTGCA 60.001 52.381 0.00 0.00 0.00 4.57
223 224 1.699343 GACTACGAAGACAGGTGTGC 58.301 55.000 0.00 0.00 0.00 4.57
224 225 1.534163 TCGACTACGAAGACAGGTGTG 59.466 52.381 0.00 0.00 45.74 3.82
225 226 1.888215 TCGACTACGAAGACAGGTGT 58.112 50.000 0.00 0.00 45.74 4.16
236 237 2.863153 ACGTTCCCGTCGACTACG 59.137 61.111 14.70 18.15 46.28 3.51
248 249 3.731264 CGTGATGTTAGGAGGAGACGTTC 60.731 52.174 0.00 0.00 0.00 3.95
249 250 2.163815 CGTGATGTTAGGAGGAGACGTT 59.836 50.000 0.00 0.00 0.00 3.99
250 251 1.743958 CGTGATGTTAGGAGGAGACGT 59.256 52.381 0.00 0.00 0.00 4.34
251 252 2.014857 TCGTGATGTTAGGAGGAGACG 58.985 52.381 0.00 0.00 0.00 4.18
252 253 3.280295 TCTCGTGATGTTAGGAGGAGAC 58.720 50.000 0.00 0.00 34.30 3.36
253 254 3.646736 TCTCGTGATGTTAGGAGGAGA 57.353 47.619 0.00 0.00 34.30 3.71
254 255 4.158764 ACTTTCTCGTGATGTTAGGAGGAG 59.841 45.833 0.00 0.00 34.30 3.69
255 256 4.087182 ACTTTCTCGTGATGTTAGGAGGA 58.913 43.478 0.00 0.00 34.30 3.71
256 257 4.158764 AGACTTTCTCGTGATGTTAGGAGG 59.841 45.833 0.00 0.00 34.30 4.30
257 258 5.317733 AGACTTTCTCGTGATGTTAGGAG 57.682 43.478 0.00 0.00 34.70 3.69
258 259 5.312120 GAGACTTTCTCGTGATGTTAGGA 57.688 43.478 0.00 0.00 33.35 2.94
282 283 8.898761 TGGTGCTCGTATTTTCATGTATTTATT 58.101 29.630 0.00 0.00 0.00 1.40
283 284 8.445275 TGGTGCTCGTATTTTCATGTATTTAT 57.555 30.769 0.00 0.00 0.00 1.40
284 285 7.551262 ACTGGTGCTCGTATTTTCATGTATTTA 59.449 33.333 0.00 0.00 0.00 1.40
285 286 6.374333 ACTGGTGCTCGTATTTTCATGTATTT 59.626 34.615 0.00 0.00 0.00 1.40
286 287 5.880332 ACTGGTGCTCGTATTTTCATGTATT 59.120 36.000 0.00 0.00 0.00 1.89
287 288 5.294306 CACTGGTGCTCGTATTTTCATGTAT 59.706 40.000 0.00 0.00 0.00 2.29
288 289 4.629634 CACTGGTGCTCGTATTTTCATGTA 59.370 41.667 0.00 0.00 0.00 2.29
289 290 3.436704 CACTGGTGCTCGTATTTTCATGT 59.563 43.478 0.00 0.00 0.00 3.21
290 291 3.436704 ACACTGGTGCTCGTATTTTCATG 59.563 43.478 0.17 0.00 0.00 3.07
291 292 3.674997 ACACTGGTGCTCGTATTTTCAT 58.325 40.909 0.17 0.00 0.00 2.57
292 293 3.064207 GACACTGGTGCTCGTATTTTCA 58.936 45.455 0.17 0.00 0.00 2.69
297 298 0.885879 TTCGACACTGGTGCTCGTAT 59.114 50.000 17.66 0.00 36.37 3.06
299 300 1.007271 CTTCGACACTGGTGCTCGT 60.007 57.895 17.66 0.00 36.37 4.18
300 301 0.597637 AACTTCGACACTGGTGCTCG 60.598 55.000 14.55 14.55 36.33 5.03
303 304 1.798813 CCTAAACTTCGACACTGGTGC 59.201 52.381 0.17 0.00 0.00 5.01
317 318 6.544931 AGTCCACCAAGTTTAAAGTCCTAAAC 59.455 38.462 0.00 0.00 40.56 2.01
318 319 6.544564 CAGTCCACCAAGTTTAAAGTCCTAAA 59.455 38.462 0.00 0.00 0.00 1.85
319 320 6.059484 CAGTCCACCAAGTTTAAAGTCCTAA 58.941 40.000 0.00 0.00 0.00 2.69
320 321 5.455612 CCAGTCCACCAAGTTTAAAGTCCTA 60.456 44.000 0.00 0.00 0.00 2.94
321 322 4.461198 CAGTCCACCAAGTTTAAAGTCCT 58.539 43.478 0.00 0.00 0.00 3.85
322 323 3.568430 CCAGTCCACCAAGTTTAAAGTCC 59.432 47.826 0.00 0.00 0.00 3.85
323 324 4.204799 ACCAGTCCACCAAGTTTAAAGTC 58.795 43.478 0.00 0.00 0.00 3.01
328 329 3.949113 GTGAAACCAGTCCACCAAGTTTA 59.051 43.478 0.00 0.00 31.14 2.01
350 351 1.904537 AGGTGGTTAGGTTCCTTACGG 59.095 52.381 0.00 0.00 0.00 4.02
351 352 2.564062 TCAGGTGGTTAGGTTCCTTACG 59.436 50.000 0.00 0.00 0.00 3.18
354 355 1.351350 GCTCAGGTGGTTAGGTTCCTT 59.649 52.381 0.00 0.00 0.00 3.36
397 398 5.528043 AATTATGCATAACCAATTCCGCA 57.472 34.783 21.10 0.00 31.69 5.69
398 399 8.240682 TGTATAATTATGCATAACCAATTCCGC 58.759 33.333 21.10 7.13 0.00 5.54
451 453 6.288294 ACAACCTAAAAGAAAAGGCCAATTC 58.712 36.000 5.01 9.13 36.24 2.17
454 456 4.712337 TGACAACCTAAAAGAAAAGGCCAA 59.288 37.500 5.01 0.00 36.24 4.52
456 458 4.929819 TGACAACCTAAAAGAAAAGGCC 57.070 40.909 0.00 0.00 36.24 5.19
476 478 9.379791 GGAACGGAGGGAGTATATATTATTTTG 57.620 37.037 0.00 0.00 0.00 2.44
499 501 7.493367 ACAAATCCAAAACAAGTAATTCGGAA 58.507 30.769 0.00 0.00 0.00 4.30
500 502 7.013846 AGACAAATCCAAAACAAGTAATTCGGA 59.986 33.333 0.00 0.00 0.00 4.55
501 503 7.145323 AGACAAATCCAAAACAAGTAATTCGG 58.855 34.615 0.00 0.00 0.00 4.30
502 504 9.329913 CTAGACAAATCCAAAACAAGTAATTCG 57.670 33.333 0.00 0.00 0.00 3.34
507 509 9.146984 CGTATCTAGACAAATCCAAAACAAGTA 57.853 33.333 0.00 0.00 0.00 2.24
508 510 7.119262 CCGTATCTAGACAAATCCAAAACAAGT 59.881 37.037 0.00 0.00 0.00 3.16
509 511 7.333423 TCCGTATCTAGACAAATCCAAAACAAG 59.667 37.037 0.00 0.00 0.00 3.16
510 512 7.162761 TCCGTATCTAGACAAATCCAAAACAA 58.837 34.615 0.00 0.00 0.00 2.83
511 513 6.703319 TCCGTATCTAGACAAATCCAAAACA 58.297 36.000 0.00 0.00 0.00 2.83
512 514 7.280205 ACATCCGTATCTAGACAAATCCAAAAC 59.720 37.037 0.00 0.00 0.00 2.43
513 515 7.335627 ACATCCGTATCTAGACAAATCCAAAA 58.664 34.615 0.00 0.00 0.00 2.44
514 516 6.884832 ACATCCGTATCTAGACAAATCCAAA 58.115 36.000 0.00 0.00 0.00 3.28
515 517 6.479972 ACATCCGTATCTAGACAAATCCAA 57.520 37.500 0.00 0.00 0.00 3.53
516 518 7.776618 ATACATCCGTATCTAGACAAATCCA 57.223 36.000 0.00 0.00 32.66 3.41
530 532 9.570468 ACTAAAATGAGTCTAGATACATCCGTA 57.430 33.333 12.66 6.93 0.00 4.02
531 533 8.353684 CACTAAAATGAGTCTAGATACATCCGT 58.646 37.037 12.66 7.10 0.00 4.69
532 534 7.327275 GCACTAAAATGAGTCTAGATACATCCG 59.673 40.741 12.66 6.68 0.00 4.18
533 535 8.364142 AGCACTAAAATGAGTCTAGATACATCC 58.636 37.037 12.66 0.00 0.00 3.51
536 538 9.628500 TCTAGCACTAAAATGAGTCTAGATACA 57.372 33.333 0.00 0.00 34.65 2.29
540 542 9.069082 GGTATCTAGCACTAAAATGAGTCTAGA 57.931 37.037 11.59 11.59 38.76 2.43
541 543 9.073475 AGGTATCTAGCACTAAAATGAGTCTAG 57.927 37.037 0.00 0.00 33.29 2.43
542 544 8.998277 AGGTATCTAGCACTAAAATGAGTCTA 57.002 34.615 0.00 0.00 0.00 2.59
543 545 7.906199 AGGTATCTAGCACTAAAATGAGTCT 57.094 36.000 0.00 0.00 0.00 3.24
544 546 8.198109 TGAAGGTATCTAGCACTAAAATGAGTC 58.802 37.037 0.00 0.00 0.00 3.36
545 547 8.079211 TGAAGGTATCTAGCACTAAAATGAGT 57.921 34.615 0.00 0.00 0.00 3.41
564 566 9.606631 GTCTTGAATTTGTCTAGATATGAAGGT 57.393 33.333 0.00 0.00 39.77 3.50
565 567 9.605275 TGTCTTGAATTTGTCTAGATATGAAGG 57.395 33.333 0.00 0.00 39.77 3.46
574 576 9.746711 CGAATTACTTGTCTTGAATTTGTCTAG 57.253 33.333 0.00 0.00 0.00 2.43
575 577 8.717821 CCGAATTACTTGTCTTGAATTTGTCTA 58.282 33.333 0.00 0.00 0.00 2.59
576 578 7.444183 TCCGAATTACTTGTCTTGAATTTGTCT 59.556 33.333 0.00 0.00 0.00 3.41
577 579 7.581476 TCCGAATTACTTGTCTTGAATTTGTC 58.419 34.615 0.00 0.00 0.00 3.18
578 580 7.504924 TCCGAATTACTTGTCTTGAATTTGT 57.495 32.000 0.00 0.00 0.00 2.83
579 581 7.059488 CGTTCCGAATTACTTGTCTTGAATTTG 59.941 37.037 0.00 0.00 0.00 2.32
580 582 7.075741 CGTTCCGAATTACTTGTCTTGAATTT 58.924 34.615 0.00 0.00 0.00 1.82
581 583 6.348213 CCGTTCCGAATTACTTGTCTTGAATT 60.348 38.462 0.00 0.00 0.00 2.17
582 584 5.121768 CCGTTCCGAATTACTTGTCTTGAAT 59.878 40.000 0.00 0.00 0.00 2.57
583 585 4.449743 CCGTTCCGAATTACTTGTCTTGAA 59.550 41.667 0.00 0.00 0.00 2.69
584 586 3.991773 CCGTTCCGAATTACTTGTCTTGA 59.008 43.478 0.00 0.00 0.00 3.02
585 587 3.991773 TCCGTTCCGAATTACTTGTCTTG 59.008 43.478 0.00 0.00 0.00 3.02
586 588 4.243270 CTCCGTTCCGAATTACTTGTCTT 58.757 43.478 0.00 0.00 0.00 3.01
587 589 3.368116 CCTCCGTTCCGAATTACTTGTCT 60.368 47.826 0.00 0.00 0.00 3.41
588 590 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
589 591 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
590 592 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
591 593 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
592 594 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
593 595 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
594 596 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
595 597 1.856629 TACTCCCTCCGTTCCGAATT 58.143 50.000 0.00 0.00 0.00 2.17
596 598 2.083628 ATACTCCCTCCGTTCCGAAT 57.916 50.000 0.00 0.00 0.00 3.34
597 599 1.856629 AATACTCCCTCCGTTCCGAA 58.143 50.000 0.00 0.00 0.00 4.30
598 600 1.856629 AAATACTCCCTCCGTTCCGA 58.143 50.000 0.00 0.00 0.00 4.55
599 601 2.685850 AAAATACTCCCTCCGTTCCG 57.314 50.000 0.00 0.00 0.00 4.30
600 602 5.349061 TCTAAAAATACTCCCTCCGTTCC 57.651 43.478 0.00 0.00 0.00 3.62
601 603 7.046033 TGATTCTAAAAATACTCCCTCCGTTC 58.954 38.462 0.00 0.00 0.00 3.95
602 604 6.954232 TGATTCTAAAAATACTCCCTCCGTT 58.046 36.000 0.00 0.00 0.00 4.44
603 605 6.156429 ACTGATTCTAAAAATACTCCCTCCGT 59.844 38.462 0.00 0.00 0.00 4.69
604 606 6.583562 ACTGATTCTAAAAATACTCCCTCCG 58.416 40.000 0.00 0.00 0.00 4.63
605 607 9.901172 TTAACTGATTCTAAAAATACTCCCTCC 57.099 33.333 0.00 0.00 0.00 4.30
624 626 9.847224 AGAAGTATCACCTTTTTCTTTAACTGA 57.153 29.630 0.00 0.00 0.00 3.41
626 628 9.286170 GGAGAAGTATCACCTTTTTCTTTAACT 57.714 33.333 0.00 0.00 33.87 2.24
627 629 9.063615 TGGAGAAGTATCACCTTTTTCTTTAAC 57.936 33.333 0.00 0.00 37.23 2.01
628 630 9.635404 TTGGAGAAGTATCACCTTTTTCTTTAA 57.365 29.630 0.00 0.00 37.23 1.52
629 631 9.063615 GTTGGAGAAGTATCACCTTTTTCTTTA 57.936 33.333 0.00 0.00 37.23 1.85
630 632 7.014326 GGTTGGAGAAGTATCACCTTTTTCTTT 59.986 37.037 0.00 0.00 37.23 2.52
631 633 6.490381 GGTTGGAGAAGTATCACCTTTTTCTT 59.510 38.462 0.00 0.00 37.23 2.52
632 634 6.004574 GGTTGGAGAAGTATCACCTTTTTCT 58.995 40.000 0.00 0.00 37.23 2.52
633 635 5.183331 GGGTTGGAGAAGTATCACCTTTTTC 59.817 44.000 0.00 0.00 37.23 2.29
634 636 5.077564 GGGTTGGAGAAGTATCACCTTTTT 58.922 41.667 0.00 0.00 37.23 1.94
635 637 4.105697 TGGGTTGGAGAAGTATCACCTTTT 59.894 41.667 0.00 0.00 37.23 2.27
636 638 3.655777 TGGGTTGGAGAAGTATCACCTTT 59.344 43.478 0.00 0.00 37.23 3.11
637 639 3.256704 TGGGTTGGAGAAGTATCACCTT 58.743 45.455 0.00 0.00 37.23 3.50
638 640 2.840651 CTGGGTTGGAGAAGTATCACCT 59.159 50.000 0.00 0.00 37.23 4.00
639 641 2.572104 ACTGGGTTGGAGAAGTATCACC 59.428 50.000 0.00 0.00 36.89 4.02
640 642 3.983044 ACTGGGTTGGAGAAGTATCAC 57.017 47.619 0.00 0.00 0.00 3.06
641 643 3.559171 GCAACTGGGTTGGAGAAGTATCA 60.559 47.826 11.55 0.00 42.99 2.15
642 644 3.010420 GCAACTGGGTTGGAGAAGTATC 58.990 50.000 11.55 0.00 42.99 2.24
643 645 2.375174 TGCAACTGGGTTGGAGAAGTAT 59.625 45.455 11.55 0.00 42.99 2.12
644 646 1.771854 TGCAACTGGGTTGGAGAAGTA 59.228 47.619 11.55 0.00 42.99 2.24
645 647 0.550914 TGCAACTGGGTTGGAGAAGT 59.449 50.000 11.55 0.00 42.99 3.01
646 648 1.691196 TTGCAACTGGGTTGGAGAAG 58.309 50.000 11.55 0.00 43.93 2.85
647 649 2.151502 TTTGCAACTGGGTTGGAGAA 57.848 45.000 0.00 4.69 43.93 2.87
648 650 2.151502 TTTTGCAACTGGGTTGGAGA 57.848 45.000 0.00 2.38 43.93 3.71
649 651 2.977772 TTTTTGCAACTGGGTTGGAG 57.022 45.000 0.00 0.00 43.93 3.86
810 812 4.444081 ACGACGGGGGAGGAGGAG 62.444 72.222 0.00 0.00 0.00 3.69
892 894 2.826702 GTGTGTGAGGTTCGGGGT 59.173 61.111 0.00 0.00 0.00 4.95
912 914 1.879796 CGGCTTCTGGAAGTTTCTGCT 60.880 52.381 11.32 0.00 40.45 4.24
1038 1040 1.675310 CCGCATCTCCTTGTTGCCA 60.675 57.895 0.00 0.00 37.94 4.92
1069 1071 8.413229 CAAACTAATTAGGAGAAGAGAGGAGAG 58.587 40.741 16.73 0.00 0.00 3.20
1122 1124 3.433709 CGGATCGATATGTGCTCTGATC 58.566 50.000 0.00 0.00 33.26 2.92
1205 1217 6.098838 AGCTCCTCAGTTGTATGTATTCATCA 59.901 38.462 0.00 0.00 35.70 3.07
1206 1218 6.520272 AGCTCCTCAGTTGTATGTATTCATC 58.480 40.000 0.00 0.00 35.70 2.92
1207 1219 6.491714 AGCTCCTCAGTTGTATGTATTCAT 57.508 37.500 0.00 0.00 38.00 2.57
1221 1233 5.016051 TGTAAAATCTGCTAGCTCCTCAG 57.984 43.478 17.23 4.35 0.00 3.35
1245 1257 4.023963 GCATCATCAGATCACATGGTTGAG 60.024 45.833 0.00 0.00 30.20 3.02
1259 1271 4.118410 AGTAAGAAAGCGAGCATCATCAG 58.882 43.478 0.00 0.00 33.17 2.90
1322 1335 6.214412 TGGTACATGGATGGTATGCATACATA 59.786 38.462 32.19 22.61 39.45 2.29
1334 1347 8.669095 TGAGTATCTCTGATGGTACATGGATGG 61.669 44.444 0.00 0.00 39.07 3.51
1335 1348 6.210185 TGAGTATCTCTGATGGTACATGGATG 59.790 42.308 0.00 0.00 39.07 3.51
1336 1349 6.318112 TGAGTATCTCTGATGGTACATGGAT 58.682 40.000 0.00 0.00 39.07 3.41
1337 1350 5.705400 TGAGTATCTCTGATGGTACATGGA 58.295 41.667 0.00 0.00 39.07 3.41
1338 1351 5.772169 TCTGAGTATCTCTGATGGTACATGG 59.228 44.000 0.00 0.00 39.07 3.66
1339 1352 6.072008 CCTCTGAGTATCTCTGATGGTACATG 60.072 46.154 3.66 0.00 39.07 3.21
1340 1353 6.009589 CCTCTGAGTATCTCTGATGGTACAT 58.990 44.000 3.66 0.00 39.07 2.29
1341 1354 5.380900 CCTCTGAGTATCTCTGATGGTACA 58.619 45.833 3.66 0.00 37.70 2.90
1342 1355 4.764823 CCCTCTGAGTATCTCTGATGGTAC 59.235 50.000 14.63 0.00 38.44 3.34
1343 1356 4.751340 GCCCTCTGAGTATCTCTGATGGTA 60.751 50.000 19.77 0.00 42.00 3.25
1344 1357 3.843422 CCCTCTGAGTATCTCTGATGGT 58.157 50.000 14.63 0.00 38.44 3.55
1345 1358 2.562298 GCCCTCTGAGTATCTCTGATGG 59.438 54.545 16.89 16.89 42.45 3.51
1346 1359 3.005684 GTGCCCTCTGAGTATCTCTGATG 59.994 52.174 3.66 4.97 37.70 3.07
1347 1360 3.230134 GTGCCCTCTGAGTATCTCTGAT 58.770 50.000 3.66 0.00 37.70 2.90
1380 1401 2.876091 TCGAGGAGCACAACGAATTAG 58.124 47.619 0.00 0.00 0.00 1.73
1552 1573 8.885722 CACGAGCCCAAAATTAGTTAATAAGTA 58.114 33.333 0.00 0.00 0.00 2.24
1581 1602 5.371629 GTGTTTAGTCGTATGAAAGCACAC 58.628 41.667 10.00 7.04 0.00 3.82
1593 1614 0.677842 AGGGCTTCGTGTTTAGTCGT 59.322 50.000 0.00 0.00 0.00 4.34
1636 1657 1.545582 CATTGAAACCTGCCCACGAAT 59.454 47.619 0.00 0.00 0.00 3.34
1857 1882 4.715713 ACAACTAACTGGAGGAAAGGAAC 58.284 43.478 0.00 0.00 0.00 3.62
1974 2006 5.236478 AGCACTAACGTATGCAAATATCCAC 59.764 40.000 18.27 0.00 44.59 4.02
2012 2044 2.888834 ACCATGTCTGTTTTTGGTGC 57.111 45.000 0.00 0.00 40.87 5.01
2092 2124 2.600790 TCCACAAAGACGAAGGTCCTA 58.399 47.619 0.00 0.00 44.54 2.94
2102 2134 5.181748 AGTTCTAGCATGATCCACAAAGAC 58.818 41.667 0.00 0.00 0.00 3.01
2107 2139 2.481969 GCGAGTTCTAGCATGATCCACA 60.482 50.000 0.00 0.00 0.00 4.17
2203 2235 7.023575 CCACATAGATCTGCAAGTTAACAAAC 58.976 38.462 5.18 0.00 33.76 2.93
2541 2765 3.801114 AGAAGCAAGTCCAAAACAACC 57.199 42.857 0.00 0.00 0.00 3.77
2542 2766 3.306973 GCAAGAAGCAAGTCCAAAACAAC 59.693 43.478 0.00 0.00 44.79 3.32
2752 2976 1.948834 TGCATTCACAAGACACACAGG 59.051 47.619 0.00 0.00 0.00 4.00
2767 2991 0.627451 TCATTGCTCCCCTCTGCATT 59.373 50.000 0.00 0.00 39.07 3.56
2803 3027 2.832129 GTCATACAGACCAAGACCCTCA 59.168 50.000 0.00 0.00 41.56 3.86
2976 3200 1.261619 GTGCCAAGAAACACAGACGAG 59.738 52.381 0.00 0.00 36.77 4.18
3006 3230 1.067516 CACAGGGCAGACACAAAAAGG 59.932 52.381 0.00 0.00 0.00 3.11
3029 3254 0.605319 GTCGACCACATCAAAGGGCA 60.605 55.000 3.51 0.00 29.93 5.36
3033 3258 4.214119 ACAAATCTGTCGACCACATCAAAG 59.786 41.667 14.12 0.65 33.23 2.77
3072 3297 1.332997 GAAATGCATCTCCTCTTGCGG 59.667 52.381 0.00 0.00 41.80 5.69
3088 3313 1.283321 GAGCACCCCCTCTTCAGAAAT 59.717 52.381 0.00 0.00 0.00 2.17
3180 3406 1.156034 ATGAGCGTGTCATGCCATCG 61.156 55.000 13.52 0.00 44.82 3.84
3279 3506 7.307337 GCATCCCATAATTTTCCATTTTTAGCG 60.307 37.037 0.00 0.00 0.00 4.26
3410 3637 6.316390 CGTCCCAAAAGCTTGAGATACTTATT 59.684 38.462 0.00 0.00 34.14 1.40
3417 3644 2.859165 TCGTCCCAAAAGCTTGAGAT 57.141 45.000 0.00 0.00 34.14 2.75
3436 3663 8.047310 CACAATTTTCATACCTAGTACTCCCTT 58.953 37.037 0.00 0.00 0.00 3.95
3472 3700 2.104281 CCAAAATAGTAGGGGTCCGAGG 59.896 54.545 0.00 0.00 0.00 4.63
3490 3718 3.068873 GCAACAACATTACCCAACTCCAA 59.931 43.478 0.00 0.00 0.00 3.53
3512 3741 3.731867 GCTGACTCCAACAACAACAACAG 60.732 47.826 0.00 0.00 0.00 3.16
3513 3742 2.163412 GCTGACTCCAACAACAACAACA 59.837 45.455 0.00 0.00 0.00 3.33
3514 3743 2.163412 TGCTGACTCCAACAACAACAAC 59.837 45.455 0.00 0.00 0.00 3.32
3544 3773 8.780846 TCCGCAACTTTTCTTAAATACATCTA 57.219 30.769 0.00 0.00 0.00 1.98
3555 3784 6.173339 TCAGATATTCTCCGCAACTTTTCTT 58.827 36.000 0.00 0.00 0.00 2.52
3625 3855 5.531287 TGCAGTATCGCACTCTCTTCTTATA 59.469 40.000 0.00 0.00 36.86 0.98
3629 3859 2.095461 TGCAGTATCGCACTCTCTTCT 58.905 47.619 0.00 0.00 36.86 2.85
3641 3871 4.175516 GCTAGATGATGAGCTGCAGTATC 58.824 47.826 16.64 16.28 35.73 2.24
3686 3916 0.469917 CCGTCCCATAATGCAGGACT 59.530 55.000 17.22 0.00 46.53 3.85
3692 3922 0.035458 CTCCCTCCGTCCCATAATGC 59.965 60.000 0.00 0.00 0.00 3.56
3706 3936 4.678256 TCACACTCTGATTTCTACTCCCT 58.322 43.478 0.00 0.00 0.00 4.20
3735 3965 1.070786 GGCACAAGTCCGAACCAGA 59.929 57.895 0.00 0.00 0.00 3.86
3737 3967 1.227823 CAGGCACAAGTCCGAACCA 60.228 57.895 0.00 0.00 0.00 3.67
3741 3971 1.070786 GGTTCAGGCACAAGTCCGA 59.929 57.895 0.00 0.00 0.00 4.55
3742 3972 0.320374 TAGGTTCAGGCACAAGTCCG 59.680 55.000 0.00 0.00 0.00 4.79
3746 3976 0.729116 CGCATAGGTTCAGGCACAAG 59.271 55.000 0.00 0.00 0.00 3.16
3766 3996 3.521560 CGGCTAGTGATACAAAAGCTCA 58.478 45.455 0.00 0.00 33.67 4.26
3767 3997 2.285488 GCGGCTAGTGATACAAAAGCTC 59.715 50.000 0.00 0.00 33.67 4.09
3781 4011 3.969250 TTTTGGAGGCGGCGGCTAG 62.969 63.158 36.29 0.00 38.98 3.42
3782 4012 3.554696 TTTTTGGAGGCGGCGGCTA 62.555 57.895 36.29 19.51 38.98 3.93
3783 4013 4.966787 TTTTTGGAGGCGGCGGCT 62.967 61.111 36.82 36.82 42.48 5.52
3797 4027 3.157881 GGAGGCAGAAAGCTAGGTTTTT 58.842 45.455 20.20 12.60 44.79 1.94
3798 4028 2.555448 GGGAGGCAGAAAGCTAGGTTTT 60.555 50.000 20.20 4.88 44.79 2.43
3799 4029 1.004862 GGGAGGCAGAAAGCTAGGTTT 59.995 52.381 19.41 19.41 44.79 3.27
3800 4030 0.621082 GGGAGGCAGAAAGCTAGGTT 59.379 55.000 0.12 0.12 44.79 3.50
3801 4031 0.547712 TGGGAGGCAGAAAGCTAGGT 60.548 55.000 0.00 0.00 44.79 3.08
3802 4032 0.107459 GTGGGAGGCAGAAAGCTAGG 60.107 60.000 0.00 0.00 44.79 3.02
3803 4033 0.107459 GGTGGGAGGCAGAAAGCTAG 60.107 60.000 0.00 0.00 44.79 3.42
3804 4034 1.899437 CGGTGGGAGGCAGAAAGCTA 61.899 60.000 0.00 0.00 44.79 3.32
3805 4035 2.759795 GGTGGGAGGCAGAAAGCT 59.240 61.111 0.00 0.00 44.79 3.74
3806 4036 2.747855 CGGTGGGAGGCAGAAAGC 60.748 66.667 0.00 0.00 44.65 3.51
3807 4037 2.045926 CCGGTGGGAGGCAGAAAG 60.046 66.667 0.00 0.00 34.06 2.62
3845 4075 1.817911 GCTATAGGGCCACCGGAGAC 61.818 65.000 9.46 0.00 43.47 3.36
3846 4076 1.533273 GCTATAGGGCCACCGGAGA 60.533 63.158 9.46 0.00 43.47 3.71
3847 4077 3.060866 GCTATAGGGCCACCGGAG 58.939 66.667 9.46 0.00 43.47 4.63
3864 4094 2.388890 GATCCACTCCGCCTCCATGG 62.389 65.000 4.97 4.97 39.35 3.66
3865 4095 1.070445 GATCCACTCCGCCTCCATG 59.930 63.158 0.00 0.00 0.00 3.66
3866 4096 1.074926 AGATCCACTCCGCCTCCAT 60.075 57.895 0.00 0.00 0.00 3.41
3867 4097 1.758514 GAGATCCACTCCGCCTCCA 60.759 63.158 0.00 0.00 39.53 3.86
3868 4098 2.851071 CGAGATCCACTCCGCCTCC 61.851 68.421 0.00 0.00 42.18 4.30
3869 4099 2.725008 CGAGATCCACTCCGCCTC 59.275 66.667 0.00 0.00 42.18 4.70
3870 4100 2.835431 CCGAGATCCACTCCGCCT 60.835 66.667 0.00 0.00 42.18 5.52
3871 4101 4.593864 GCCGAGATCCACTCCGCC 62.594 72.222 0.00 0.00 41.54 6.13
3872 4102 4.593864 GGCCGAGATCCACTCCGC 62.594 72.222 0.00 0.00 44.73 5.54
3873 4103 3.917760 GGGCCGAGATCCACTCCG 61.918 72.222 0.00 0.00 42.18 4.63
3874 4104 2.066999 AAGGGCCGAGATCCACTCC 61.067 63.158 0.00 0.00 42.18 3.85
3875 4105 1.144936 CAAGGGCCGAGATCCACTC 59.855 63.158 0.00 0.00 41.79 3.51
3876 4106 3.036429 GCAAGGGCCGAGATCCACT 62.036 63.158 0.00 0.00 0.00 4.00
3877 4107 2.514824 GCAAGGGCCGAGATCCAC 60.515 66.667 0.00 0.00 0.00 4.02
3901 4131 6.782082 AAAAGATCTAAAAATGGAGCCCTC 57.218 37.500 0.00 0.00 0.00 4.30
3922 4152 7.142680 CACAAACCCTAATAAAGCTCGAAAAA 58.857 34.615 0.00 0.00 0.00 1.94
3923 4153 6.263617 ACACAAACCCTAATAAAGCTCGAAAA 59.736 34.615 0.00 0.00 0.00 2.29
3924 4154 5.766174 ACACAAACCCTAATAAAGCTCGAAA 59.234 36.000 0.00 0.00 0.00 3.46
3925 4155 5.310451 ACACAAACCCTAATAAAGCTCGAA 58.690 37.500 0.00 0.00 0.00 3.71
3926 4156 4.901868 ACACAAACCCTAATAAAGCTCGA 58.098 39.130 0.00 0.00 0.00 4.04
3927 4157 4.094442 GGACACAAACCCTAATAAAGCTCG 59.906 45.833 0.00 0.00 0.00 5.03
3928 4158 5.123979 CAGGACACAAACCCTAATAAAGCTC 59.876 44.000 0.00 0.00 0.00 4.09
3929 4159 5.010282 CAGGACACAAACCCTAATAAAGCT 58.990 41.667 0.00 0.00 0.00 3.74
3930 4160 4.380550 GCAGGACACAAACCCTAATAAAGC 60.381 45.833 0.00 0.00 0.00 3.51
3931 4161 5.010282 AGCAGGACACAAACCCTAATAAAG 58.990 41.667 0.00 0.00 0.00 1.85
3932 4162 4.993028 AGCAGGACACAAACCCTAATAAA 58.007 39.130 0.00 0.00 0.00 1.40
3933 4163 4.042311 TGAGCAGGACACAAACCCTAATAA 59.958 41.667 0.00 0.00 0.00 1.40
3934 4164 3.585289 TGAGCAGGACACAAACCCTAATA 59.415 43.478 0.00 0.00 0.00 0.98
3935 4165 2.375174 TGAGCAGGACACAAACCCTAAT 59.625 45.455 0.00 0.00 0.00 1.73
3936 4166 1.771854 TGAGCAGGACACAAACCCTAA 59.228 47.619 0.00 0.00 0.00 2.69
3937 4167 1.347707 CTGAGCAGGACACAAACCCTA 59.652 52.381 0.00 0.00 0.00 3.53
3938 4168 0.109342 CTGAGCAGGACACAAACCCT 59.891 55.000 0.00 0.00 0.00 4.34
3939 4169 2.633860 CTGAGCAGGACACAAACCC 58.366 57.895 0.00 0.00 0.00 4.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.