>input_sequence_40304
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------ATGGGCCAGGCCTTTCGCAAGCTCTTCGATGCCTTCTTT
GGCAACAAGGAGATGCGGGTGCGCCCTCTTCTCTCCTCTCTTCTCCTAATTAGTTTGTTGGGCGAATGGATCGGTCGACC
TTCG----------ATCAGAGCACATATCGATCCGCTCCTCCTTTGATTTACTATTAGTTTCATATGATTCTGTCTGATT
TGATTTGTTTTCATCCTGATGAATACATACAACTGAGGAGCTAGCAGATTTTACATCTCAACCATGTGATCTGATGATGC
TCGCTTTCTTACTAGCTGCTTTTCTGTCATGTTAGTT-GCTATTTTCATCGCACTATGTATGCATACCATCCATGTACCA
TCAGAGATACT--------CAGAGGGCACGAAGATCCAAGCTAATTCGTTGTGCTCCTCGATTCTAATGGAACGGCCTGT
TGCCTTATGCTAGGTGGTGATGCTTGGGTTGGATGCAGCCGGTAAAACCACCATACTCTACAAGCTACACATTGGCGAAG
TACTCTCCACCGTCCCCACCATTGGTACAACATACCTGCCTGCCTATCTCTTTACTTATTAACTAATTTTGGGCTCGTGC
AGTGTGCTTTCATACGACTAAACACGAAGCCCTTGAACTACTTTGCTAGTTAATCCATTCGTGGGCAGGTTTCAATGTTG
AGAAGGTTCAGTACAAGAATGTAGTGTTCACTGTGTGGGATGTGGGCGGCCAGGAGAAATTGAGGCCCTTGTGGAGGCAC
TACTTCAACAACACGGATGCTCTGGTCATTACTCTCATTCCATATGCTTGCTTGTTGTTTCGTTGTATTTTAAGTAGCGA
TTCAACATA----GGAACATATAGGACTACTGAAGCTATAAGTTCCTTTCCTCCAGTTAGTTGTTTCATTCTTTACTTGC
TTCTCTTTTGTGCCCATCTGATTTATGAACAAGTTCAGTAGCAGTCACCAGGAAAGATGGTCAATTAGCTT-------AT
CTACTGTGGATATTTGCATACGTTAGTGCTCTTAGCTGCTGAGGCACCAAAAACAGACATGGTAGAATTGTTAGCCAAAC
AGGATAAGTGTCTGGATGTTACTACACATCTCCCTACCTAGCCTAGGACCTTCGTCTTTGTGGATCATGCTAGAACTCGC
CTTTGATTTATTGATGGGGCATAGTGATTTGTGATATGACACTGCTTTCTTGAGATGTAAGCTTTCTCTGTTGCGTTTGT
TAACTTGCAGATCTATGTGGTCGATTCCCTCGACAGGGATAGAATTGGAAGAGCCAGGGCTGAATTTCAGGTTTATGGCA
TTTCTTATCGAGAACCTGTTCCTGTTTCTGTGGTAATATCTGTTGTGATATGTGCTCTAACTTACTGTAATCTATTATCT
CTTGCAGGCCATAATCAATGACCCATTTATGCTCAACAGTGTATTATTGGTGTTTGCTAACAAGCAAGACATGGTATGCT
TGTCATGGTTTCTTTTGGTATCACGTGCACTTGTTCAAGATGGTGTGGTTTGTGTAGAATACTAGTAGATTATAATT---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------CTCTGCCTTAAGACTGGTTGTTTTGGACTTGCTTCTTGCGTGCATATATAA
AGAGTTTGCAGATTGTAGGGGATTTACATTGTTTACATATATGGACATGCTGCATTTATGTAGGGCTGAAGTAGCCTTTT
GTTGATATTTTCAGTTTCACTTGTGAAAAGGAAGAGTTTATTCTGCCTTAGAAAACAGGTTTATTTTCACTCCTTGTATG
CTTAATCATGTAGTGCCTGTGTGTCTTGTGAATGCAGAGGGGAGCAATGACCCCGATGGAAGTATGTGAGGGTCTTGGTC
TGTATGACCTGAACAACCGCATCTGGCACATCCAAGGCACATGTGCTCTTAAAGGCGATGGCCTGTACGAAGGCTTGGAC
TGGCTAGCGACGACTCTGGATGAAATGCGAGCTACAGGGCGGTTAGCTTCGACATCGGCGTAA-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------
>chr1A_1_TraesCS1A01G197800
GCTGTATGGCTTCGTAGTGCTCCTGAGGAGGTTGACATCCTTTGTCGACAGGGCAGTAATGACTCTGTTTAATTAATGAA
AACCTTTTATGAGCAAAAAAGCTAATTTGGTGTAAATTAAAGTTACACAAAGCTCATTTTGTCCTGCGTGCAATTTTTTA
ACACGGTACAAATGTAGAAGCCCACATACACATAGATACACTTACTCTTAAGAACACACACGTGCACACCTGTCTTCGTA
GTCGACGGGAACGTCTCCTCCTAACATCACGAGAAAGTCTCTAATAAATACATGAAAATACGAGCACCAGTGTCGAAGTT
TAGGACTTTAAACTTGGTGGACTGGTTTCACCGTAAGGAACCTAACCACCTGAGCTACTCTCAATTCTCGTCCTACCTGC
GG-AATTGGTTATGCATAATTATACATAAAGCTCTTTCTATTTCAGAATAAAGAATTGGCCTTTTCTTTTAGGTTGTCAA
AATAATATATACTCCCTCCGTTCCGAATTACTTGTTTTGGATTTGTCTAGATACGGATGTATCTAGACTCATTTTAGTGC
TAGATACCTTCATATCTAGACAAATTCAAGACAAGTAATTCGGAACGGAGGGAGTATTTTTAGAATCAGTTAAAGAAAAA
GGTGATACTTCTCCAACCCAGTTGCAAAAAAAACAGCTTAACCCGACCTAACCTAACTGCAACCCGCTCACATGGTCGTT
GGGGCCCACGTAAAAGTAGACGGCCCAGATTATTCCTTGGGCATCCGCTACCACCCCCCAACGCCAGTGAGCTCAGCATC
TCCACCTCCTCCTCCTCCTCCCCCGTCGTCTCCGGCTCCGACTTCGACCAGAGGAAGCAAGGCAGGCAGGCAGGGGCGGG
GCCGATCGATCCTACCCCGAACCTCACACACGCAGCAGAAACTTCCAGAAGCCGGTCCATTCCCATCCTCTTCGGCGGCC
GACCAGCCGGCCAGATTCTCCTGATCCAAGGAGGGAGGGAGATGGGCCAGGCCTTTCGCAAGCTCTTCGATGCCTTCTTT
GGCAACAAGGAGATGCGGGTGCGCCCTCTTCTCTCCTCTCTTCTCCTAATTAGTTTGTTGGGCGAATGGATCGGTCGACC
TTCG----------ATCAGAGCACATATCGATCCGCTCCTCCTTTGATTTACTATTAGTTTCATATGATTCTGTCTGATT
TGATTTGTTTTCATCCTGATGAATACATACAACTGAGGAGCTAGCAGATTTTACATCTCAACCATGTGATCTGATGATGC
TCGCTTTCTTACTAGCTGCTTTTCTGTCATGTTAGTT-GCTATTTTCATCGCACTATGTATGCATACCATCCATGTACCA
TCAGAGATACT--------CAGAGGGCACGAAGATCCAAGCTAATTCGTTGTGCTCCTCGATTCTAATGGAACGGCCTGT
TGCCTTATGCTAGGTGGTGATGCTTGGGTTGGATGCAGCCGGTAAAACCACCATACTCTACAAGCTACACATTGGCGAAG
TACTCTCCACCGTCCCCACCATTGGTACAACATACCTGCCTGCCTATCTCTTTACTTATTAACTAATTTTGGGCTCGTGC
AGTGTGCTTTCATACGACTAAACACGAAGCCCTTGAACTACTTTGCTAGTTAATCCATTCGTGGGCAGGTTTCAATGTTG
AGAAGGTTCAGTACAAGAATGTAGTGTTCACTGTGTGGGATGTGGGCGGCCAGGAGAAATTGAGGCCCTTGTGGAGGCAC
TACTTCAACAACACGGATGCTCTGGTCATTACTCTCATTCCATATGCTTGCTTGTTGTTTCGTTGTATTTTAAGTAGCGA
TTCAACATA----GGAACATATAGGACTACTGAAGCTATAAGTTCCTTTCCTCCAGTTAGTTGTTTCATTCTTTACTTGC
TTCTCTTTTGTGCCCATCTGATTTATGAACAAGTTCAGTAGCAGTCACCAGGAAAGATGGTCAATTAGCTT-------AT
CTACTGTGGATATTTGCATACGTTAGTGCTCTTAGCTGCTGAGGCACCAAAAACAGACATGGTAGAATTGTTAGCCAAAC
AGGATAAGTGTCTGGATGTTACTACACATCTCCCTACCTAGCCTAGGACCTTCGTCTTTGTGGATCATGCTAGAACTCGC
CTTTGATTTATTGATGGGGCATAGTGATTTGTGATATGACACTGCTTTCTTGAGATGTAAGCTTTCTCTGTTGCGTTTGT
TAACTTGCAGATCTATGTGGTCGATTCCCTCGACAGGGATAGAATTGGAAGAGCCAGGGCTGAATTTCAGGTTTATGGCA
TTTCTTATCGAGAACCTGTTCCTGTTTCTGTGGTAATATCTGTTGTGATATGTGCTCTAACTTACTGTAATCTATTATCT
CTTGCAGGCCATAATCAATGACCCATTTATGCTCAACAGTGTATTATTGGTGTTTGCTAACAAGCAAGACATGGTATGCT
TGTCATGGTTTCTTTTGGTATCACGTGCACTTGTTCAAGATGGTGTGGTTTGTGTAGAATACTAGTAGATTATAATT---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------CTCTGCCTTAAGACTGGTTGTTTTGGACTTGCTTCTTGCGTGCATATATAA
AGAGTTTGCAGATTGTAGGGGATTTACATTGTTTACATATATGGACATGCTGCATTTATGTAGGGCTGAAGTAGCCTTTT
GTTGATATTTTCAGTTTCACTTGTGAAAAGGAAGAGTTTATTCTGCCTTAGAAAACAGGTTTATTTTCACTCCTTGTATG
CTTAATCATGTAGTGCCTGTGTGTCTTGTGAATGCAGAGGGGAGCAATGACCCCGATGGAAGTATGTGAGGGTCTTGGTC
TGTATGACCTGAACAACCGCATCTGGCACATCCAAGGCACATGTGCTCTTAAAGGCGATGGCCTGTACGAAGGCTTGGAC
TGGCTAGCGACGACTCTGGATGAAATGCGAGCTACAGGGCGGTTAGCTTCGACATCGGCGTAAAGAGTAACAGGGATGGC
TCGTCTGTGTTTCTTGGCACCTCATTTTTC-CTTTTTGTGTCTGCCCTGTGGCTGCCCTTTGATGTGGTCGACAGATTTG
TTGTAGTATGAATGATCCGCAAGAGGAGATGCATTTCTGAAGAGGGGGTGCTCCTCCTAGTTAGAAGCGCATATCTATTC
TGTTCTACTCTAGGATTGTGGGATGTAAATACTGATG-TTTCTACCGATGGCATGACACGCTCA-TATTTGTGGTTTAGT
CTGAAGAAATCACAGTATTTACTCTACTTTGTTCGTTTGTTGGGAATGACTAGCTAGAATGCCAACGCTAAAAATGGAAA
ATTATGGGATGCTTTTCTTGGATTGGTGGTGTTGTGGACGTGGTGGCGTTAGCTGCTTCAAATCCATGTCGAAGAAGCTG
AAGCAAAGGGTCTGTGTTGTACTCCCTCCGTCCCGAAATAAGTATCTCAAGCTTTTGGGACGAAGGGAGTACTAGGTATG
AAAATTGTGAATG-ATATTCCTCGGACCCCTACTATTTTGGAGTTGGGT-AATGTTGTTGCTGTTGTTGTTGTTGGAGTC
AGCAGAAACAAATAGATGTATTTAAGAAAAGTTGCGGAGAATATCTGAAGAAATCAAGCCCTTG-AAGAACCAAGATGAT
TTTCTTATCAGAAATATAAGAAGAGAGTGCGATACTGCAGCTCATCATCTAGCTTTGCTAGTAGTTTCAAAAAAAAGTCC
TGCATTATGGGACGGAGGGAGTAGAAATCAGAGTGTGAATATTGTCTGGTTCGGACTTGTGCCTGAACCTATGCGTGAGC
TTTTGTATCACTAGCCGCCGCCTCCAAAAAACCTAGCTTTCTGCCTCCCACCGGCGCCGGCGCCGGGCCATCCCGTCTCC
GGTGGCCCTATAGCCATGGAGGCGGAGTGGATCTCGGCCCTTGCCGGTGGGAGGGCTCCATTTTTAGATCTTTTTTCGAG
CTTTATTAGGGTTTGTGTCCTGCTCAGGA
>chr1B_3
--TGTATGGCTTCTTAGTGTTCCTGAGGAGGTTGACATCCTTTGTCGACAGGACTGTAATGACATTGTTTAATTAATGGA
AACATTTTATGAGCAAAAAAGGTAGTTTGCTGTAAATTAG----------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------GAAACTGTGAACACAAGTGTCT-----
----ACTTGAAACTTGGTGGACTGGTTTCATTGTGAGGAACCTAACCATCTGAGCTACTCTCGGTTCACGTCCTAACGTG
CGAAATTGGTTATGCGCAACTGTAAATAAAGCTCGTTCTATTTCAG----AAAAAATAGCCTTTTCTTTTAGGTTGTTAA
AGAAATGTTTATTTATTTAGAATTAG------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------AAAAAACAGCTTAACCCGACCTAACCTAACTGTAACCCGCTCACATGGTTGTT
GGGGCCCACGTAAAAGTAGACGGCCCAGATTATTCCTTGGGAATCCGCTACCA-CCCCCAACGCCAGTGAGCTCAGCATC
TCCACCTCCTTGTCCTCCTCCCCCGTCGTCTCCGGCTCCGACTTCGACCAGAGGAAGGAAGGCAGGCAGGGGC-GGCGGG
GCCGATCGATCCTTCCCCGAACCTCACACGCGCCGCAGAAACTTCCAGAAGCCGGTCCAATCCCATCCTCTTCGGCGGCC
GACCAGCCAGCCAGATTCTCCTGATCCAAGGAGGGAGGGAGATGGGCCAGGCCTTTCGCAAGCTCTTCGATGCCTTCTTC
GGCAACAAGGAGATGCGGGTGCGCCCTCTTTTCTCCTCTCTTCTCCTAATCAGTTTGTTGGGCGAATGGATCGATCGACC
GACTTTAAGAATGAATCAGAGCACACATCGATCCGCTCCTCCTTTGATTTAGTTTCAT----ATATGATTCTGTCTGATT
TGATTTTTC-TCATCC---TGAATACATACTATTGAGGAGCTAGCAGATTTCACATATCAACCATGTGATGTGATGATGC
TCGCTTTCTTACTAGCTGCTTTTCTGTCATGTTAGTTTGCTATTTTCATCGCACCATGTATGC-----------------
------------------------------AAGATCCAAGTTAATTCGCTGTGCTCCTCGATTCTAATGGAGCGGCCTGT
TGCCTTATGCTAGGTGGTGATGCTTGGGTTGGATGCAGCCGGTAAAACCACCATACTCTACAAGCTACACATTGGCGAAG
TACTCTCCACCGTCCCCACCATTGGTACAACATACCTGCCTGCCTATCTCTTAACTCAGTAACTAATTTTGGGCTCATGC
ACTGTGCTTCCATCCGACTAAACACCAAGCCCTTGAACTACTTTGCTAATTAATCCGTTCGTGGGCAGGTTTCAATGTTG
AGAAGGTTCAGTACAAGAATGTAGTGTTCACTGTGTGGGATGTGGGCGGCCAGGAGAAATTGAGGCCCTTGTGGAGGCAC
TACTTCAACAACACGGATGCTCTGGTCATTACTCTCATTCCATATGCTTGCATGTTGTTTCGTTGTATTTTAAGTAGCAA
TTCAACATA----GGAACATATAGGACTACTAAAGCTATAAATTCCTTTCCTCCAGTTAGTTGTTCCATT-TTTACTTGC
TTCTCTTTTGTGCCTATCTGATTTATAAACAAGTTCAGTAGCAGTCACCAGGAAAGATGGTCAATTAGCTT-------AT
CTACCATGGATATTTGCATAGGTTAGTGCCCTTAGCTGCTGAGCCACCAAAAACAGACATGGTAGAATTGTTAGCCAAAC
AGGATAAGTGTCTGGATGTTACTACACATCTCCCTACCTAGCCCAGGACCTTCATCTTAGTGGATCATGCTAGAACTCGC
CTTTGATTTATTTATGGGGCACAGTGATTTGTGATATGACACTGCTTTCTTGAGATGTAAGCTTTCTCTGTTTCTTTTGT
TAACTTGCAGATCTATGTGGTTGATTCCCTCGACAGGGATAGAATTGGAAGAGCCAGGGCTGAATTTCAGGTTTTTGGCA
TTTCTTATCGAGAACCTGTTCCTGTTTCTGTGGTAATATCTGTTGTGATATGTGCTCTAACTTACTGTAATCTATTATCT
CTTGCAGGCCATAATCAATGACCCATTTATGCTCAACAGTGTATTATTGGTGTTTGCTAACAAGCAAGACATGGTATGCC
TGTCATGGTTTCTTTTGGTATCACGTGCACTTGTTCAAGATGGTGTGGTTTGTGTAGAATACTAGTAGATTATAATT---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------CTCTGCCTTAAGAC----TGTTTTGGACTTGCTTCTTGCGTGCATATATAA
AGAGTTTGCAGATTGTAGGGGATTTACATTGTTTACATATATGGACATGCTGCATTTATGTAGGGCTGAAGTAGCTTTTT
GTTGATATTTTCAGTTTCACTTATGAAAAGGAAGAGTTTATTCTGGCTTAGAAAACAGGTTTATTTTCACTGCTCGTATG
CTTAATCATGTAGTGTCTGTGTCC--TGTGGATGCAGAGGGGAGCAATGACCCCGATGGAAGTATGCGAGGGTCTTGGTC
TGTATGACCTGAACAACCGCATCTGGCACATCCAAGGCACATGTGCTCTTAAAGGCGATGGCCTGTACGAAGGCTTGGAC
TGGCTAGCGACGACTCTGGATGAAATGCGAGCTACAGGGCGGTTAGCTTCGACATCGGCGTAAAGAGTAACAGTGATGGA
TCGTCTGTGTTTCTTGGAACCTCATTTTTA-CTTTTTGTGTCTGCCCTGTGGCCGCCTTTTGATGTGGTCGACAGATTTG
TTGTAGTATGAATGATTCACAAGAGGGGATGCGTTTCTGAAGAGGGGGTGCTCCTCCTAGTTGGAAGCGCATATCTATTC
TGTTCTACTCTAGGATTGTGGGATGTAAATACTGATG-TTTCTACTGATGGCATGACACGCTCAATATTTGTGGTTTAGT
CTGAAGAAATCACAGTATTTACTCTACTTTGTTCATTTGTTGGGAATGACTAGCTAGAATGCCAAGGCTAAAAATGGAAA
ATATTGGGATGCTTTTCTTGGATTGGTGGTGTTGTGGACGTGGTGGCGTTAGCTGCTTCAAATCCATGTCGAAGAAGCTG
AAGCAAAGTGTCTGTGTTGTACTCCCTCCGTCCCGACATAAGTGTCTCAAGCTTTTGGGACGGAGGGAGTACTAGGTATG
AAAATTGTGGATG-ATATTTCTGGGACCCCTACTATTCTGGAGTTTGGGCAATGTTGTTG---TTGTTGTTGTCGGAGTC
AGCAGAAACAAAGAGATGTATTT-AGAAAAGTTGCGGAGAATATCTGAAGAAATCAAGCCCTTG-AAGAATCAAGATGAT
TTTCTTATCAGAAAGATAGGAAGAGAGTGCAATACTGTAGCTCATCATCTAGCTTTGCTAGTAGTGT-AAAAAAACGTCC
TACATTATGGGACGGGGGGAGTAGAAATCAGAGTGTGAATATTGACCGGTAAGGAATTGTGCCTGAACCTATGCGCAAGC
TTTTGTATCA----------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------
>chr1D_665
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------AAAAAAAACAGCTTAACCCGACCTAACCTAACTGCAACCCGCTCACATGGTCGTC
GGGGCCCACGTAAAAGTAGACGGCCCAGATTATTCCTTGGGAATCCGCTACCA-CCCCCAACGCCAGTGAGCTCAGCATC
TCCACCTCCTCGTCCTCCTCCCCCGTCGTCTCCGGCTCCGACTTCGACGAGAGGAAGGCAGGCAGGCAGGCAGGGGCGGG
CCCGATCGATCCTTCCCCGAACCTCACACACGCCGCAGAAACTTCCAGAAGCCGGTCCGTTCCCATCCTCTTCGGCGGCC
GACCAGCCGGCCAGATTCCCCTGATCCAGGGAGGGAGGGAGATGGGCCAGGCCTTTCGCAAGCTCTTCGATGCCTTCTTC
GGCAACAAGGAGATGCGGGTGCGCCCTCTTTTCTCCTCTCTTCTCCTAATTAGTTTGTTGGGCGAATGGATCGGTCGACA
GACTTTAAGAATGAATCAGAGCACATATCGATCCGCTCCTCCTTTGATTTACTATTAGTTTCATATGTTTCTGTCTGATT
CGATTTTTTTTCATCC---TGGATACATACAAGTGAGTTGCTAGCAGATTTTACATATCAACCATGTGATGTGATGGTGC
TCGCTTTCTTACTAGCTGCTTCTCTGTCATGTTAGTT-GCTATTTTCG--------------------------------
TCAGAGATACTCAGAGAGTCAGAGGGCACGAAGATCCAAGTTAATTCGTTGTGCTCCTCGATTCTAATGGAATGGCCTGT
TGCCTTATGCTAGGTGGTGATGCTTGGGTTGGATGCAGCCGGTAAAACCACCATACTCTACAAGCTACACATTGGCGAAG
TACTCTCCACCGTCCCCACTATTGGTACAACATACCCGCCTGCCTATCTCTTAACTTATTAACTAATTTTGGGCTCATGC
ACTGTGCTTTCATCCGACTAAACATGAAGCCCTTGAACTACTTTGCTAATTAATCCGTTCGTGGGCAGGTTTCAATGTTG
AGAAGGTTCAGTACAAGAATGTAGTGTTCACTGTGTGGGATGTGGGCGGCCAGGAGAAATTGAGGCCCTTGTGGAGGCAC
TACTTCAACAACACGGATGCTCTGGTCATTAC--TCATTCCATATGCTTGCTTGCTGTTTCGTTGTATTTTAAGCAACAA
TTCAACATATATGGGAACATACAGGACTACTAAAGCTATAAATTCCTTTCCTCCGGTTAGTTGTTTCATTCTTTACTTGC
TTCTCTTTTGTGCCCATCTGATTTATGAACAAGTTCAGTAGCAGTCAGCAGGAAAGATGGTCAATTAGCTTATCTAGTAT
CTACTATGGATATTTGCATACGTTACTGCTCTTAGCTTCTGAGCCACCAAAAACAGACATGGTAGAATTGTTAGCCAAAC
AGGGTAAGTATCTGGATGTTACTACACATCTCCCTACCTAGCCCAGGACCTTCATCTTAGTGGACCATGCTAG-ACTCGC
CTTGGATTTGTTGATGGGGCATAGTGATTTGTGATATGACACTGCTTTCTTGAGATGTAAGCTTTCTCTGTTGCTTTTGT
TAACTTGCAGATCTATGTGGTCGATTCCCTGGACAGGGATAGAATTGGAAGAGCCAGGGCTGAATTTCAGGTTTATAGCA
TTTCTTATCGAGAACCTGTTCCTGTTTCTGTGGTAATATCTGTTGTGATATGTGCTCTAACTTACTGTAATCTATTATCT
CTTGCAGGCCATAATCAATGACCCATTTATGCTCAACAGTGTATTATTGGTGTTTGCTAACAAGCAAGACATGGTATGCT
TGTCATGGTTTCTTTTGGTATCACGTGCACTTGTTCAAGATGGTGTGGTTTGTGTAGAATACTAGTAGATTATAATTGGA
TCTGTCTAGGACACATCTAGATGTGACATAGTTATCTCACATCTAAGCTGATGTTCACTCTATTTTGTGGTCTATTTTTT
TATCCTAGTTTTTTTTTGTTTCTTGTTGCTGCATTATATATTTGTGGGAGCTTAGATGCGACATCCTTAAAAAACATCTA
GATGTGAATTAGATAAACTGATTATAATTCTCTGCCTTAAGACTCTTTGTTTTGGACTTGCTTCTTGCGTGCA-------
AGAGTTTGCAGATTGTAGGGGATTTACATTGTTTGCATATATGGACATGCTGCATTTATGTAGGGCTGAAGTAGCCTTTT
GTTGATATTTTCAGTTTCACTTGTGAAAAGGAAGAGTTTATTCTGCCTTAGGAAACAGGTTTATTTTCACTCCTTGTATG
CTTAATCATGTAGTGTCTTTGTGTCTTGTGGATGCAGAGGGGAGCAATGACCCCGATGGAAGTATGCGAGGGTCTTGGTC
TGTATGACCTGAACAACCGCATCTGGCACATCCAAGGCACATGTGCTCTTAAAGGCGATGGCCTGTACGAAGGCTTGGAC
TGGCTAGCGACGACTCTGGATGAAATGCGAGCTACAGGGCGGTTAGCTTCGACATCGGCGTAACGAGTAACAGGGATGGA
TCGTCTGTGTTTCTTGGCACCTCATTTTTTTCTTTTTGTGTCTGCCCTGTGGCCGCCTTTTGATGTGGTCAACAGATTTG
TTGTAGTATGAATGATTCGCAAGAGGAGATGCGTTTCTGAAGAGGGGGTGCTCCTCCTAGTTAGAAGCGCATATCTATTC
TGTTCTACTCTAGGACTGTGGAATGTAAATACTGATGTTTTCTACTGATGGCATGACACGCTCAATATTTGTGGTTTAGT
CTGAAGAAATCACAGTATTTACTCTACTTTGTTGGTTTGTTGGGAATGACTAGCTAGAATGCCAAGGCTAAAGATGGAAA
ATTATGTGATGCTTTTCCTGGATTGGTGGTGTTGTGGACATGGTGGTGTTAGCTGCTTCAGATCCATGTCGAAGAAGCTG
AAGCAAAGGGTCTGTGCTGC-----------------------------------------------------AGGTATG
AAAATTGTGAATGGATATTTCTCGGACCCCTACTAGTCTGTAGTTGGGT-AA------------TGTTGTTGTTGGAGTC
AGCAGAAACAAAGAGATGTATTT-AGAAAAGTTGCGGAGAATATCTGAAGAAATCAAGCCCTTAAAAGAACCAAGATTAT
TTTCTTATCAGAAAGATAGGAAGAGAGTGCAATACTGTAGCTCATCATCTAGCTTTGCTA--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------
>SNPs
SS-----------S-----S--------------------------------S-S--------SS-------------S-
---S-----------------S--S----S---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S-SS--S---S------SSSSSS
SSSS----S---------------------SS--S-------------S-------------SS---S-------S-SSS
S--------------SS--S-S--S---------S-----------SSSS--S--S-S-------------------S--
-SS---S-S--S-SSS-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------------------------------
-----------------------------------------S-----------S--------------------------
-----------S---------------------------------------------S----------------------
-------------S-------------------S----------------------------------------------
-------------------------------------------------------------------------------S
------------------------------S-------------------------------------------------
SS-S----------------------------------------------------------------------------
------S---------SSS-------------S-----------------------S-------------S---------
------------------------------------------------------S--------SSSSSSSSSSSSSSSSS
----------------------------------------S---------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------S-----------------------S---
-S-----------S----------------------------------S-------S-----------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------S-
-------------------------------S---------S--------------------------------------
--------------------------------------------------------------------------------
-----S-------------------------------------S------------------------------------
-------------------------------------------S---------S----S---------------------
--------------------------------------------------------------------------S-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------SS----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------S--------------S-----------------------------------S-------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------S
-----------------------------S-----------------------S---S----------------------
----------------S---------------S-----------------------------------------------
---------------------------------------------S----------------------------------
-----------------------------------------------------------------S--------------
--------------------------------------------------------------------------------
------------------------------------S------S------------------S-----------------
-------------------S-----------------S----------------------SSS-----------------
------------S----------S--------------------------------------------------------
--------------S---S-----------S------S---------------------------S-S-------S----
-S-------------S----------------------------S-S---SS---S-------------------SS---
----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_318
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------TACGAGCACCAGTGTCGAAG--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------
>reverse_1614
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------ACGACTAAACACGAAGCCCT-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------
>forward_1124
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------AATGGATCGGTCGACC
TTCG----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------
>reverse_3254
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------TGCCCTTTGATGTGGTCGAC-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------
