AutoCloner

Multiple sequence alignment - TraesCS1A01G193800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1A01G193800	chr1A	100.000	2956	0	0	1	2956	351339564	351342519	0.000000e+00	5459
1	TraesCS1A01G193800	chr1A	91.767	583	43	3	24	601	351169983	351169401	0.000000e+00	806
2	TraesCS1A01G193800	chr1D	93.119	1831	49	18	888	2668	279092744	279094547	0.000000e+00	2612
3	TraesCS1A01G193800	chr1D	93.576	576	33	2	24	595	278942688	278942113	0.000000e+00	856
4	TraesCS1A01G193800	chr1D	94.884	430	17	5	24	450	279083375	279083802	0.000000e+00	667
5	TraesCS1A01G193800	chr1D	85.714	434	32	13	447	856	279085149	279085576	5.850000e-117	431
6	TraesCS1A01G193800	chr1D	83.333	132	7	4	2657	2778	279094606	279094732	1.120000e-19	108
7	TraesCS1A01G193800	chr1B	92.745	1213	39	15	855	2033	378828571	378829768	0.000000e+00	1707
8	TraesCS1A01G193800	chr1B	92.819	376	26	1	24	398	378827597	378827972	7.210000e-151	544
9	TraesCS1A01G193800	chr1B	89.632	299	14	7	2662	2956	378830737	378831022	6.020000e-97	364
10	TraesCS1A01G193800	chr1B	84.462	251	14	11	617	857	378828155	378828390	1.070000e-54	224
11	TraesCS1A01G193800	chr6B	90.664	482	37	6	119	595	261423312	261422834	4.160000e-178	634
12	TraesCS1A01G193800	chr6B	86.831	486	53	10	24	502	548834091	548834572	1.560000e-147	532
13	TraesCS1A01G193800	chr3B	85.619	598	63	13	24	601	128640869	128640275	9.060000e-170	606
14	TraesCS1A01G193800	chr4D	88.641	493	41	8	107	595	308675965	308675484	1.180000e-163	586
15	TraesCS1A01G193800	chr4B	87.627	493	45	8	107	595	385492872	385492392	2.570000e-155	558
16	TraesCS1A01G193800	chr3D	83.646	587	63	25	24	601	82088579	82088017	3.380000e-144	521
17	TraesCS1A01G193800	chr2B	83.669	496	57	14	24	502	314141610	314142098	2.090000e-121	446
18	TraesCS1A01G193800	chr2A	80.952	588	78	20	24	584	152258571	152259151	4.520000e-118	435
19	TraesCS1A01G193800	chr7B	84.668	437	48	11	24	443	645481274	645481708	4.560000e-113	418
20	TraesCS1A01G193800	chr7B	81.860	215	27	8	24	226	427201696	427201910	1.410000e-38	171
21	TraesCS1A01G193800	chr2D	85.666	293	23	7	24	298	484733976	484733685	1.040000e-74	291

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1A01G193800	chr1A	351339564	351342519	2955	False	5459.00	5459	100.0000	1	2956	1	chr1A.!!$F1	2955
1	TraesCS1A01G193800	chr1A	351169401	351169983	582	True	806.00	806	91.7670	24	601	1	chr1A.!!$R1	577
2	TraesCS1A01G193800	chr1D	279092744	279094732	1988	False	1360.00	2612	88.2260	888	2778	2	chr1D.!!$F2	1890
3	TraesCS1A01G193800	chr1D	278942113	278942688	575	True	856.00	856	93.5760	24	595	1	chr1D.!!$R1	571
4	TraesCS1A01G193800	chr1D	279083375	279085576	2201	False	549.00	667	90.2990	24	856	2	chr1D.!!$F1	832
5	TraesCS1A01G193800	chr1B	378827597	378831022	3425	False	709.75	1707	89.9145	24	2956	4	chr1B.!!$F1	2932
6	TraesCS1A01G193800	chr3B	128640275	128640869	594	True	606.00	606	85.6190	24	601	1	chr3B.!!$R1	577
7	TraesCS1A01G193800	chr3D	82088017	82088579	562	True	521.00	521	83.6460	24	601	1	chr3D.!!$R1	577
8	TraesCS1A01G193800	chr2A	152258571	152259151	580	False	435.00	435	80.9520	24	584	1	chr2A.!!$F1	560

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
865	2505	0.601057	CCGTGCTTTTACAAAGGGGG	59.399	55.0	0.0	0.0	0.0	5.4	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2130	3857	0.179225	CAACGTGAATGTACCAGCGC	60.179	55.0	0.0	0.0	0.0	5.92	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
202	216	7.539712	TGAAAACTTCTCAAGTGTCTAACTG	57.460	36.000	0.00	0.00	41.91	3.16
346	373	5.976458	ACAACAATCTCTTCATCTCCTCTC	58.024	41.667	0.00	0.00	0.00	3.20
350	377	5.129155	ACAATCTCTTCATCTCCTCTCAAGG	59.871	44.000	0.00	0.00	44.89	3.61
351	378	3.641046	TCTCTTCATCTCCTCTCAAGGG	58.359	50.000	0.00	0.00	43.56	3.95
427	455	7.337942	ACCATTGTGAATCTTTTAGAGATCACC	59.662	37.037	16.35	0.00	44.41	4.02
450	1828	9.745880	CACCATGGTACTTACTACTAATAGTTG	57.254	37.037	19.28	0.00	41.99	3.16
481	1859	8.755696	TTCAAAACATATGGCTTTGTACATTC	57.244	30.769	22.10	0.00	32.92	2.67
483	1861	9.237187	TCAAAACATATGGCTTTGTACATTCTA	57.763	29.630	22.10	7.06	32.92	2.10
597	2043	6.515272	ACTGTGTGACATTTTGAGAAAACT	57.485	33.333	0.00	0.00	32.37	2.66
625	2071	8.049655	TGATTTTGCATAGTGTTATACAAGCA	57.950	30.769	0.00	0.00	33.04	3.91
657	2103	5.816682	AGTACGGATGAAAAGGAGGAAAAT	58.183	37.500	0.00	0.00	0.00	1.82
658	2104	6.954232	AGTACGGATGAAAAGGAGGAAAATA	58.046	36.000	0.00	0.00	0.00	1.40
733	2190	3.750371	TCTCCGTGTGAAATCAAATGGT	58.250	40.909	10.87	0.00	40.43	3.55
738	2195	4.379394	CCGTGTGAAATCAAATGGTGGTAG	60.379	45.833	3.97	0.00	35.86	3.18
745	2202	7.339466	GTGAAATCAAATGGTGGTAGAGGTTAT	59.661	37.037	0.00	0.00	0.00	1.89
746	2203	8.553153	TGAAATCAAATGGTGGTAGAGGTTATA	58.447	33.333	0.00	0.00	0.00	0.98
747	2204	8.980481	AAATCAAATGGTGGTAGAGGTTATAG	57.020	34.615	0.00	0.00	0.00	1.31
748	2205	7.691993	ATCAAATGGTGGTAGAGGTTATAGT	57.308	36.000	0.00	0.00	0.00	2.12
787	2244	6.712241	TTCTACTCGAGAATCAGCAAAAAG	57.288	37.500	21.68	0.00	39.36	2.27
825	2282	4.079958	AGGACCAACTAATAAAAGCCGGAT	60.080	41.667	5.05	0.00	0.00	4.18
865	2505	0.601057	CCGTGCTTTTACAAAGGGGG	59.399	55.000	0.00	0.00	0.00	5.40
872	2512	3.572642	CTTTTACAAAGGGGGTGGACTT	58.427	45.455	0.00	0.00	0.00	3.01
873	2513	4.732065	CTTTTACAAAGGGGGTGGACTTA	58.268	43.478	0.00	0.00	0.00	2.24
874	2514	5.330233	CTTTTACAAAGGGGGTGGACTTAT	58.670	41.667	0.00	0.00	0.00	1.73
1043	2699	5.241662	ACAGAAAGAAAAAGATCTCCTCCG	58.758	41.667	0.00	0.00	0.00	4.63
1296	2958	1.460504	GGTAAGTAGCCAGCCAAACC	58.539	55.000	0.00	0.00	0.00	3.27
1313	2975	1.128188	ACCTTCGCTCCACTCCCTTT	61.128	55.000	0.00	0.00	0.00	3.11
1433	3095	0.110056	TAAGACTCGCGACGAACACC	60.110	55.000	3.71	0.00	34.74	4.16
1458	3131	1.224592	CCCGTTCCCCCATCTCTTG	59.775	63.158	0.00	0.00	0.00	3.02
1474	3147	4.389374	TCTCTTGCCTCGTTTGATTTTCT	58.611	39.130	0.00	0.00	0.00	2.52
1475	3148	4.452455	TCTCTTGCCTCGTTTGATTTTCTC	59.548	41.667	0.00	0.00	0.00	2.87
1476	3149	4.389374	TCTTGCCTCGTTTGATTTTCTCT	58.611	39.130	0.00	0.00	0.00	3.10
1477	3150	4.452455	TCTTGCCTCGTTTGATTTTCTCTC	59.548	41.667	0.00	0.00	0.00	3.20
1824	3501	0.034896	ATTAGATTACCAGCCGCCCG	59.965	55.000	0.00	0.00	0.00	6.13
1875	3552	2.024414	CCCATCGTCATTCTTTTCCCC	58.976	52.381	0.00	0.00	0.00	4.81
1876	3553	2.024414	CCATCGTCATTCTTTTCCCCC	58.976	52.381	0.00	0.00	0.00	5.40
1885	3562	0.538746	TCTTTTCCCCCTTCGGTTGC	60.539	55.000	0.00	0.00	0.00	4.17
1948	3628	7.861629	TGGTAGTACTGATGAGGAAATTGATT	58.138	34.615	5.39	0.00	0.00	2.57
2002	3682	3.813166	TCCATCGTCTTTGAACTGGTTTC	59.187	43.478	0.00	0.00	34.41	2.78
2008	3688	5.028375	CGTCTTTGAACTGGTTTCTGTTTC	58.972	41.667	0.00	0.00	35.61	2.78
2130	3857	0.038166	ACAGGCCACAACATACTGGG	59.962	55.000	5.01	0.00	33.63	4.45
2282	4493	7.821359	TCCATCTCTCACTTTTACAAGATTCAG	59.179	37.037	0.00	0.00	33.72	3.02
2289	4500	7.726216	TCACTTTTACAAGATTCAGAGAGACA	58.274	34.615	0.00	0.00	33.72	3.41
2364	4575	9.698309	TGTGCATCTTTCTATAAGTATAAGCTC	57.302	33.333	0.00	0.00	0.00	4.09
2432	4643	1.068083	CCATCACGGATCGAGGGTG	59.932	63.158	6.88	6.88	36.56	4.61
2445	4656	4.840005	GGGTGGTAGGCTCGCAGC	62.840	72.222	0.00	0.11	41.46	5.25
2497	4708	6.900299	GTGCAAATGTAGCGTTAATTCTAGAC	59.100	38.462	0.00	0.00	33.85	2.59
2534	4745	8.928733	CAAATTTTGGACTAATGGATGACTTTG	58.071	33.333	0.97	0.00	0.00	2.77
2601	4812	2.433604	ACTGCATCTCCATGGACACTAG	59.566	50.000	11.44	8.38	0.00	2.57
2602	4813	1.139654	TGCATCTCCATGGACACTAGC	59.860	52.381	11.44	11.23	0.00	3.42
2603	4814	1.139654	GCATCTCCATGGACACTAGCA	59.860	52.381	11.44	0.00	0.00	3.49
2647	4873	7.592051	ACAAAAGCAAGCAAGAAAATGAAAAA	58.408	26.923	0.00	0.00	0.00	1.94
2753	5061	3.311322	CGACAAGGAGCTTTAAACACACA	59.689	43.478	0.00	0.00	0.00	3.72
2754	5062	4.201871	CGACAAGGAGCTTTAAACACACAA	60.202	41.667	0.00	0.00	0.00	3.33
2755	5063	4.993905	ACAAGGAGCTTTAAACACACAAC	58.006	39.130	0.00	0.00	0.00	3.32
2756	5064	4.461081	ACAAGGAGCTTTAAACACACAACA	59.539	37.500	0.00	0.00	0.00	3.33
2757	5065	4.632538	AGGAGCTTTAAACACACAACAC	57.367	40.909	0.00	0.00	0.00	3.32
2758	5066	4.013728	AGGAGCTTTAAACACACAACACA	58.986	39.130	0.00	0.00	0.00	3.72
2780	5088	2.028778	CTGGCTGCCGCTAGCTAG	59.971	66.667	16.84	16.84	44.13	3.42
2781	5089	4.227134	TGGCTGCCGCTAGCTAGC	62.227	66.667	31.88	31.88	45.62	3.42
2782	5090	3.922640	GGCTGCCGCTAGCTAGCT	61.923	66.667	36.02	23.12	46.85	3.32
2783	5091	2.355718	GCTGCCGCTAGCTAGCTC	60.356	66.667	36.02	28.03	46.85	4.09
2784	5092	3.123768	CTGCCGCTAGCTAGCTCA	58.876	61.111	36.02	30.32	46.85	4.26
2785	5093	1.007502	CTGCCGCTAGCTAGCTCAG	60.008	63.158	36.02	33.63	46.85	3.35
2804	5112	6.094881	AGCTCAGCTAAACAACAACTTACAAA	59.905	34.615	0.00	0.00	36.99	2.83
2881	5189	1.806542	CAAACAGAGCACGCATAACCT	59.193	47.619	0.00	0.00	0.00	3.50
2896	5204	5.399013	GCATAACCTAACACAAATGACCAC	58.601	41.667	0.00	0.00	0.00	4.16
2940	5250	7.122799	GGAAGGCACCTAAGAATCTAAACAATT	59.877	37.037	0.00	0.00	0.00	2.32
2942	5252	6.603599	AGGCACCTAAGAATCTAAACAATTCC	59.396	38.462	0.00	0.00	34.34	3.01

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	7.721842	TGAAGAGTAACACAAATAACATTGGGA	59.278	33.333	0.00	0.00	37.16	4.37
1	2	7.881142	TGAAGAGTAACACAAATAACATTGGG	58.119	34.615	0.00	0.00	39.65	4.12
2	3	9.912634	AATGAAGAGTAACACAAATAACATTGG	57.087	29.630	0.00	0.00	34.56	3.16
19	20	9.295825	TCACCATTAATGTAACAAATGAAGAGT	57.704	29.630	14.25	0.00	33.38	3.24
20	21	9.559958	GTCACCATTAATGTAACAAATGAAGAG	57.440	33.333	14.25	0.00	33.38	2.85
21	22	9.072375	TGTCACCATTAATGTAACAAATGAAGA	57.928	29.630	14.25	0.00	33.38	2.87
22	23	9.128107	GTGTCACCATTAATGTAACAAATGAAG	57.872	33.333	14.25	0.00	33.38	3.02
235	254	8.294954	TCGGGCCATAATTTTGAAATAGTTTA	57.705	30.769	4.39	0.00	0.00	2.01
254	274	3.746045	TGACTGATAAACTATCGGGCC	57.254	47.619	0.00	0.00	46.92	5.80
346	373	4.044426	CGAAAACTTTGCTTCTTCCCTTG	58.956	43.478	0.00	0.00	0.00	3.61
350	377	3.066203	TGGACGAAAACTTTGCTTCTTCC	59.934	43.478	0.00	1.50	39.34	3.46
351	378	4.287238	TGGACGAAAACTTTGCTTCTTC	57.713	40.909	0.00	0.00	0.00	2.87
427	455	7.871463	GGCCAACTATTAGTAGTAAGTACCATG	59.129	40.741	0.00	0.00	40.24	3.66
450	1828	5.535753	AAGCCATATGTTTTGAATAGGCC	57.464	39.130	0.00	0.00	41.69	5.19
528	1906	5.530171	AGTTGATGAGCATGTATGGATGAAC	59.470	40.000	0.00	0.00	0.00	3.18
625	2071	3.610040	TTCATCCGTACTTGCATGTCT	57.390	42.857	8.74	0.00	0.00	3.41
636	2082	8.638629	TTTTATTTTCCTCCTTTTCATCCGTA	57.361	30.769	0.00	0.00	0.00	4.02
693	2150	3.690460	AGATTCATGCGGACCTTTTTCT	58.310	40.909	0.00	0.00	0.00	2.52
698	2155	0.179073	CGGAGATTCATGCGGACCTT	60.179	55.000	0.00	0.00	0.00	3.50
699	2156	1.330655	ACGGAGATTCATGCGGACCT	61.331	55.000	0.00	0.00	38.46	3.85
733	2190	7.944729	AAGTTTCGTACTATAACCTCTACCA	57.055	36.000	0.00	0.00	35.54	3.25
738	2195	8.524870	TCAACAAAGTTTCGTACTATAACCTC	57.475	34.615	0.00	0.00	35.54	3.85
745	2202	9.403110	GAGTAGAATCAACAAAGTTTCGTACTA	57.597	33.333	0.00	0.00	35.54	1.82
746	2203	7.114529	CGAGTAGAATCAACAAAGTTTCGTACT	59.885	37.037	0.00	0.00	39.32	2.73
747	2204	7.113965	TCGAGTAGAATCAACAAAGTTTCGTAC	59.886	37.037	0.00	0.00	0.00	3.67
748	2205	7.140705	TCGAGTAGAATCAACAAAGTTTCGTA	58.859	34.615	0.00	0.00	0.00	3.43
825	2282	4.153475	CGGCTAAAACTCTTCAAAATCCGA	59.847	41.667	0.00	0.00	34.50	4.55
865	2505	7.191551	GCTTTTCCCGTTTATTATAAGTCCAC	58.808	38.462	0.00	0.00	0.00	4.02
872	2512	4.035441	GCGTGGCTTTTCCCGTTTATTATA	59.965	41.667	0.00	0.00	33.09	0.98
873	2513	3.181494	GCGTGGCTTTTCCCGTTTATTAT	60.181	43.478	0.00	0.00	33.09	1.28
874	2514	2.162008	GCGTGGCTTTTCCCGTTTATTA	59.838	45.455	0.00	0.00	33.09	0.98
1129	2791	2.359602	TTCTCGTCCGCCTCGTCT	60.360	61.111	0.00	0.00	0.00	4.18
1296	2958	0.391793	GGAAAGGGAGTGGAGCGAAG	60.392	60.000	0.00	0.00	0.00	3.79
1325	2987	3.358076	GAGCGGCGTTAGGAGCAGT	62.358	63.158	9.37	0.00	36.08	4.40
1346	3008	3.554692	GCGAATCTGCACGGACGG	61.555	66.667	0.00	0.00	34.15	4.79
1458	3131	4.249661	AGAGAGAGAAAATCAAACGAGGC	58.750	43.478	0.00	0.00	0.00	4.70
1474	3147	4.536090	ACAAAGGAGAGAGAGAGAGAGAGA	59.464	45.833	0.00	0.00	0.00	3.10
1475	3148	4.848357	ACAAAGGAGAGAGAGAGAGAGAG	58.152	47.826	0.00	0.00	0.00	3.20
1476	3149	4.927267	ACAAAGGAGAGAGAGAGAGAGA	57.073	45.455	0.00	0.00	0.00	3.10
1477	3150	4.094887	CGAACAAAGGAGAGAGAGAGAGAG	59.905	50.000	0.00	0.00	0.00	3.20
1824	3501	1.075542	TGGTGATTGACGATTGCGAC	58.924	50.000	0.00	0.00	41.64	5.19
1885	3562	7.714377	AGAATTACAGAATCAATAGCAGGTGAG	59.286	37.037	0.00	0.00	0.00	3.51
1948	3628	4.517285	GCACCTGAACCAGAATTCTATCA	58.483	43.478	7.86	11.74	32.44	2.15
2002	3682	2.430332	TCAACCCAAAAGGCAGAAACAG	59.570	45.455	0.00	0.00	40.58	3.16
2008	3688	3.749665	TTCATTCAACCCAAAAGGCAG	57.250	42.857	0.00	0.00	40.58	4.85
2097	3817	1.610886	GGCCTGTCTGTCCACTTTACC	60.611	57.143	0.00	0.00	0.00	2.85
2130	3857	0.179225	CAACGTGAATGTACCAGCGC	60.179	55.000	0.00	0.00	0.00	5.92
2282	4493	6.734104	ACTTGCATTCTGTAAATGTCTCTC	57.266	37.500	0.00	0.00	0.00	3.20
2349	4560	5.047943	ACGGTGGCAGAGCTTATACTTATAG	60.048	44.000	0.00	0.00	0.00	1.31
2358	4569	2.662596	CCACGGTGGCAGAGCTTA	59.337	61.111	15.29	0.00	0.00	3.09
2359	4570	4.335647	CCCACGGTGGCAGAGCTT	62.336	66.667	21.88	0.00	35.79	3.74
2361	4572	3.031417	ATACCCACGGTGGCAGAGC	62.031	63.158	21.88	0.00	36.19	4.09
2362	4573	1.153369	CATACCCACGGTGGCAGAG	60.153	63.158	21.88	10.44	36.19	3.35
2363	4574	2.986290	CATACCCACGGTGGCAGA	59.014	61.111	21.88	8.86	36.19	4.26
2364	4575	2.824041	GCATACCCACGGTGGCAG	60.824	66.667	21.88	11.54	37.31	4.85
2445	4656	4.537433	GTCTGCTAGCCTGCCCCG	62.537	72.222	13.29	0.00	0.00	5.73
2447	4658	0.469917	TATTGTCTGCTAGCCTGCCC	59.530	55.000	13.29	0.00	0.00	5.36
2497	4708	4.083110	AGTCCAAAATTTGCTCATCACTCG	60.083	41.667	0.00	0.00	0.00	4.18
2534	4745	1.452108	CATCCCTCTTTGTCCCGCC	60.452	63.158	0.00	0.00	0.00	6.13
2601	4812	4.151798	GTTTCAGATACGAAGCTTTGTGC	58.848	43.478	26.64	18.42	43.29	4.57
2602	4813	5.342806	TGTTTCAGATACGAAGCTTTGTG	57.657	39.130	26.64	11.90	0.00	3.33
2603	4814	6.371809	TTTGTTTCAGATACGAAGCTTTGT	57.628	33.333	22.69	22.69	0.00	2.83
2647	4873	1.745087	CTGTTGCCATGCCGTATTCTT	59.255	47.619	0.00	0.00	0.00	2.52
2648	4874	1.382522	CTGTTGCCATGCCGTATTCT	58.617	50.000	0.00	0.00	0.00	2.40
2655	4881	2.677524	TCCTGCTGTTGCCATGCC	60.678	61.111	0.00	0.00	38.71	4.40
2663	4961	5.367937	ACTTGTATATGGATCTCCTGCTGTT	59.632	40.000	0.00	0.00	36.82	3.16
2670	4968	7.175347	TGATAGCACTTGTATATGGATCTCC	57.825	40.000	0.00	0.00	0.00	3.71
2779	5087	5.123227	TGTAAGTTGTTGTTTAGCTGAGCT	58.877	37.500	13.25	13.25	43.41	4.09
2780	5088	5.418310	TGTAAGTTGTTGTTTAGCTGAGC	57.582	39.130	0.00	0.00	0.00	4.26
2781	5089	7.379529	CCATTTGTAAGTTGTTGTTTAGCTGAG	59.620	37.037	0.00	0.00	0.00	3.35
2782	5090	7.147983	ACCATTTGTAAGTTGTTGTTTAGCTGA	60.148	33.333	0.00	0.00	0.00	4.26
2783	5091	6.978080	ACCATTTGTAAGTTGTTGTTTAGCTG	59.022	34.615	0.00	0.00	0.00	4.24
2784	5092	6.978080	CACCATTTGTAAGTTGTTGTTTAGCT	59.022	34.615	0.00	0.00	0.00	3.32
2785	5093	6.975772	TCACCATTTGTAAGTTGTTGTTTAGC	59.024	34.615	0.00	0.00	0.00	3.09
2786	5094	8.918961	TTCACCATTTGTAAGTTGTTGTTTAG	57.081	30.769	0.00	0.00	0.00	1.85
2862	5170	2.185004	AGGTTATGCGTGCTCTGTTT	57.815	45.000	0.00	0.00	0.00	2.83
2863	5171	3.000727	GTTAGGTTATGCGTGCTCTGTT	58.999	45.455	0.00	0.00	0.00	3.16
2881	5189	5.974158	CACATTTTCGTGGTCATTTGTGTTA	59.026	36.000	0.00	0.00	33.05	2.41
2896	5204	4.298332	CTTCCCCAGTTTTCACATTTTCG	58.702	43.478	0.00	0.00	0.00	3.46

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.