Multiple sequence alignment - TraesCS1A01G190100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G190100 chr1A 100.000 4480 0 0 1 4480 343672967 343677446 0.000000e+00 8274.0
1 TraesCS1A01G190100 chr1B 91.145 3117 132 55 313 3377 344000264 344003288 0.000000e+00 4095.0
2 TraesCS1A01G190100 chr1B 93.137 204 10 4 4277 4480 344006096 344006295 3.390000e-76 296.0
3 TraesCS1A01G190100 chr1B 95.556 45 2 0 3824 3868 523233933 523233977 6.220000e-09 73.1
4 TraesCS1A01G190100 chr1D 92.239 2474 76 34 1070 3490 270230055 270232465 0.000000e+00 3398.0
5 TraesCS1A01G190100 chr1D 81.930 570 45 34 504 1056 270229410 270229938 3.200000e-116 429.0
6 TraesCS1A01G190100 chr1D 83.541 401 19 11 3574 3957 270232513 270232883 9.290000e-87 331.0
7 TraesCS1A01G190100 chr1D 94.907 216 4 6 4268 4480 270277943 270278154 9.290000e-87 331.0
8 TraesCS1A01G190100 chr1D 95.556 45 2 0 3824 3868 396316788 396316744 6.220000e-09 73.1
9 TraesCS1A01G190100 chr1D 100.000 29 0 0 3824 3852 484102955 484102983 2.000000e-03 54.7
10 TraesCS1A01G190100 chr6D 100.000 316 0 0 1 316 312067542 312067857 6.460000e-163 584.0
11 TraesCS1A01G190100 chr3D 99.080 326 2 1 1 326 275856242 275855918 6.460000e-163 584.0
12 TraesCS1A01G190100 chr3D 89.130 46 5 0 3824 3869 509214396 509214441 1.740000e-04 58.4
13 TraesCS1A01G190100 chr5D 100.000 315 0 0 1 315 545945364 545945050 2.320000e-162 582.0
14 TraesCS1A01G190100 chr5D 84.615 78 8 4 2309 2384 440366103 440366178 1.730000e-09 75.0
15 TraesCS1A01G190100 chr7D 100.000 314 0 0 1 314 113423968 113424281 8.350000e-162 580.0
16 TraesCS1A01G190100 chr7D 100.000 314 0 0 1 314 230498791 230498478 8.350000e-162 580.0
17 TraesCS1A01G190100 chr7D 79.310 232 35 11 2161 2384 215096293 215096067 2.790000e-32 150.0
18 TraesCS1A01G190100 chr7D 77.232 224 40 9 2168 2384 438368655 438368874 2.190000e-23 121.0
19 TraesCS1A01G190100 chr7D 77.093 227 36 15 2168 2383 382256064 382256285 2.830000e-22 117.0
20 TraesCS1A01G190100 chr6B 100.000 314 0 0 1 314 135422926 135422613 8.350000e-162 580.0
21 TraesCS1A01G190100 chr5B 100.000 314 0 0 1 314 197193792 197193479 8.350000e-162 580.0
22 TraesCS1A01G190100 chr5B 100.000 314 0 0 1 314 241199300 241199613 8.350000e-162 580.0
23 TraesCS1A01G190100 chr4B 100.000 314 0 0 1 314 311275627 311275314 8.350000e-162 580.0
24 TraesCS1A01G190100 chr2A 81.250 224 29 11 2169 2384 625957808 625958026 7.710000e-38 169.0
25 TraesCS1A01G190100 chr7B 79.310 232 35 11 2161 2384 185061137 185060911 2.790000e-32 150.0
26 TraesCS1A01G190100 chr7A 79.221 231 37 10 2161 2384 228263013 228262787 2.790000e-32 150.0
27 TraesCS1A01G190100 chr7A 77.679 224 39 9 2168 2384 489163240 489163459 4.700000e-25 126.0
28 TraesCS1A01G190100 chr5A 91.525 59 3 2 1446 1503 645726284 645726341 3.710000e-11 80.5
29 TraesCS1A01G190100 chr4D 100.000 28 0 0 3824 3851 121808780 121808753 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G190100 chr1A 343672967 343677446 4479 False 8274.0 8274 100.000000 1 4480 1 chr1A.!!$F1 4479
1 TraesCS1A01G190100 chr1B 344000264 344006295 6031 False 2195.5 4095 92.141000 313 4480 2 chr1B.!!$F2 4167
2 TraesCS1A01G190100 chr1D 270229410 270232883 3473 False 1386.0 3398 85.903333 504 3957 3 chr1D.!!$F3 3453

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
272 273 0.037590 CCCATTTTCACCTGGTCGGA 59.962 55.0 0.0 0.0 36.31 4.55 F
1019 1062 0.185901 CTCCTCTCCCTCCTCCTCAG 59.814 65.0 0.0 0.0 0.00 3.35 F
1592 1747 0.327924 CATGGGAGTTGCCAGGTACA 59.672 55.0 0.0 0.0 38.95 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1366 1521 0.179073 ATCTTGGGCAGTTCGATCCG 60.179 55.000 0.0 0.0 0.00 4.18 R
2837 3060 1.228245 TGGAGAAGGTGCTGTTGGC 60.228 57.895 0.0 0.0 42.22 4.52 R
3560 4259 0.178068 CATGTCCCTCCGTTCCGAAT 59.822 55.000 0.0 0.0 0.00 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.341783 GGCAGCAGAGCACCACCT 62.342 66.667 0.00 0.00 35.83 4.00
24 25 3.054503 GCAGCAGAGCACCACCTG 61.055 66.667 0.00 0.00 0.00 4.00
25 26 2.359602 CAGCAGAGCACCACCTGG 60.360 66.667 0.00 0.00 42.17 4.45
26 27 3.644606 AGCAGAGCACCACCTGGG 61.645 66.667 0.00 0.00 44.81 4.45
66 67 3.465403 CCTGGCGTGGGAGAGGAG 61.465 72.222 0.00 0.00 0.00 3.69
67 68 4.154347 CTGGCGTGGGAGAGGAGC 62.154 72.222 0.00 0.00 0.00 4.70
115 116 3.775654 GGAGGCGGAGGTGGAGTG 61.776 72.222 0.00 0.00 0.00 3.51
116 117 4.459089 GAGGCGGAGGTGGAGTGC 62.459 72.222 0.00 0.00 0.00 4.40
168 169 3.775654 GGAGGCGGAGGTGGAGTG 61.776 72.222 0.00 0.00 0.00 3.51
169 170 4.459089 GAGGCGGAGGTGGAGTGC 62.459 72.222 0.00 0.00 0.00 4.40
192 193 4.148825 CGGAGGCGGAGGTGGAAG 62.149 72.222 0.00 0.00 0.00 3.46
193 194 2.683933 GGAGGCGGAGGTGGAAGA 60.684 66.667 0.00 0.00 0.00 2.87
194 195 2.579738 GAGGCGGAGGTGGAAGAC 59.420 66.667 0.00 0.00 0.00 3.01
195 196 3.358076 GAGGCGGAGGTGGAAGACG 62.358 68.421 0.00 0.00 0.00 4.18
197 198 4.070552 GCGGAGGTGGAAGACGCT 62.071 66.667 0.00 0.00 46.02 5.07
198 199 2.125912 CGGAGGTGGAAGACGCTG 60.126 66.667 0.00 0.00 0.00 5.18
199 200 2.636412 CGGAGGTGGAAGACGCTGA 61.636 63.158 0.00 0.00 0.00 4.26
200 201 1.216710 GGAGGTGGAAGACGCTGAG 59.783 63.158 0.00 0.00 0.00 3.35
201 202 1.216710 GAGGTGGAAGACGCTGAGG 59.783 63.158 0.00 0.00 0.00 3.86
202 203 1.228894 AGGTGGAAGACGCTGAGGA 60.229 57.895 0.00 0.00 0.00 3.71
203 204 0.832135 AGGTGGAAGACGCTGAGGAA 60.832 55.000 0.00 0.00 0.00 3.36
204 205 0.390472 GGTGGAAGACGCTGAGGAAG 60.390 60.000 0.00 0.00 0.00 3.46
205 206 0.603569 GTGGAAGACGCTGAGGAAGA 59.396 55.000 0.00 0.00 0.00 2.87
206 207 1.205893 GTGGAAGACGCTGAGGAAGAT 59.794 52.381 0.00 0.00 0.00 2.40
207 208 1.205655 TGGAAGACGCTGAGGAAGATG 59.794 52.381 0.00 0.00 0.00 2.90
208 209 1.478510 GGAAGACGCTGAGGAAGATGA 59.521 52.381 0.00 0.00 0.00 2.92
209 210 2.535331 GAAGACGCTGAGGAAGATGAC 58.465 52.381 0.00 0.00 0.00 3.06
210 211 0.453793 AGACGCTGAGGAAGATGACG 59.546 55.000 0.00 0.00 0.00 4.35
211 212 0.526524 GACGCTGAGGAAGATGACGG 60.527 60.000 0.00 0.00 0.00 4.79
212 213 0.965866 ACGCTGAGGAAGATGACGGA 60.966 55.000 0.00 0.00 0.00 4.69
213 214 0.526524 CGCTGAGGAAGATGACGGAC 60.527 60.000 0.00 0.00 0.00 4.79
214 215 0.532573 GCTGAGGAAGATGACGGACA 59.467 55.000 0.00 0.00 0.00 4.02
215 216 1.470632 GCTGAGGAAGATGACGGACAG 60.471 57.143 0.00 0.00 0.00 3.51
216 217 2.095461 CTGAGGAAGATGACGGACAGA 58.905 52.381 0.00 0.00 0.00 3.41
217 218 2.692557 CTGAGGAAGATGACGGACAGAT 59.307 50.000 0.00 0.00 0.00 2.90
218 219 3.099905 TGAGGAAGATGACGGACAGATT 58.900 45.455 0.00 0.00 0.00 2.40
219 220 3.131223 TGAGGAAGATGACGGACAGATTC 59.869 47.826 0.00 0.00 0.00 2.52
220 221 3.099905 AGGAAGATGACGGACAGATTCA 58.900 45.455 8.71 0.00 32.22 2.57
221 222 3.515502 AGGAAGATGACGGACAGATTCAA 59.484 43.478 8.71 0.00 32.22 2.69
222 223 4.020218 AGGAAGATGACGGACAGATTCAAA 60.020 41.667 8.71 0.00 32.22 2.69
223 224 4.331168 GGAAGATGACGGACAGATTCAAAG 59.669 45.833 8.71 0.00 32.22 2.77
224 225 4.543590 AGATGACGGACAGATTCAAAGT 57.456 40.909 0.00 0.00 0.00 2.66
225 226 4.899502 AGATGACGGACAGATTCAAAGTT 58.100 39.130 0.00 0.00 0.00 2.66
226 227 5.308825 AGATGACGGACAGATTCAAAGTTT 58.691 37.500 0.00 0.00 0.00 2.66
227 228 4.811555 TGACGGACAGATTCAAAGTTTG 57.188 40.909 9.44 9.44 0.00 2.93
228 229 4.447290 TGACGGACAGATTCAAAGTTTGA 58.553 39.130 14.35 14.35 38.04 2.69
237 238 1.408969 TCAAAGTTTGAACTGGGGGC 58.591 50.000 15.92 0.00 39.66 5.80
238 239 1.118838 CAAAGTTTGAACTGGGGGCA 58.881 50.000 10.19 0.00 39.66 5.36
239 240 1.693606 CAAAGTTTGAACTGGGGGCAT 59.306 47.619 10.19 0.00 39.66 4.40
240 241 2.896685 CAAAGTTTGAACTGGGGGCATA 59.103 45.455 10.19 0.00 39.66 3.14
241 242 2.990740 AGTTTGAACTGGGGGCATAA 57.009 45.000 0.00 0.00 37.98 1.90
242 243 3.252554 AGTTTGAACTGGGGGCATAAA 57.747 42.857 0.00 0.00 37.98 1.40
243 244 3.165071 AGTTTGAACTGGGGGCATAAAG 58.835 45.455 0.00 0.00 37.98 1.85
244 245 2.230130 TTGAACTGGGGGCATAAAGG 57.770 50.000 0.00 0.00 0.00 3.11
245 246 1.080638 TGAACTGGGGGCATAAAGGT 58.919 50.000 0.00 0.00 0.00 3.50
246 247 1.005450 TGAACTGGGGGCATAAAGGTC 59.995 52.381 0.00 0.00 0.00 3.85
247 248 0.335019 AACTGGGGGCATAAAGGTCC 59.665 55.000 0.00 0.00 0.00 4.46
248 249 0.849094 ACTGGGGGCATAAAGGTCCA 60.849 55.000 0.00 0.00 32.89 4.02
249 250 0.557729 CTGGGGGCATAAAGGTCCAT 59.442 55.000 0.00 0.00 32.89 3.41
250 251 1.014804 TGGGGGCATAAAGGTCCATT 58.985 50.000 0.00 0.00 32.89 3.16
251 252 1.364328 TGGGGGCATAAAGGTCCATTT 59.636 47.619 0.00 0.00 32.89 2.32
252 253 1.762370 GGGGGCATAAAGGTCCATTTG 59.238 52.381 0.00 0.00 32.89 2.32
253 254 1.138859 GGGGCATAAAGGTCCATTTGC 59.861 52.381 0.00 0.00 32.89 3.68
254 255 1.138859 GGGCATAAAGGTCCATTTGCC 59.861 52.381 17.61 17.61 40.18 4.52
255 256 1.138859 GGCATAAAGGTCCATTTGCCC 59.861 52.381 16.11 5.15 35.36 5.36
256 257 1.830477 GCATAAAGGTCCATTTGCCCA 59.170 47.619 0.00 0.00 0.00 5.36
257 258 2.435437 GCATAAAGGTCCATTTGCCCAT 59.565 45.455 0.00 0.00 0.00 4.00
258 259 3.118298 GCATAAAGGTCCATTTGCCCATT 60.118 43.478 0.00 0.00 0.00 3.16
259 260 4.626046 GCATAAAGGTCCATTTGCCCATTT 60.626 41.667 0.00 0.00 0.00 2.32
260 261 5.499313 CATAAAGGTCCATTTGCCCATTTT 58.501 37.500 0.00 0.00 0.00 1.82
261 262 3.701205 AAGGTCCATTTGCCCATTTTC 57.299 42.857 0.00 0.00 0.00 2.29
262 263 2.618794 AGGTCCATTTGCCCATTTTCA 58.381 42.857 0.00 0.00 0.00 2.69
263 264 2.302733 AGGTCCATTTGCCCATTTTCAC 59.697 45.455 0.00 0.00 0.00 3.18
264 265 2.615240 GGTCCATTTGCCCATTTTCACC 60.615 50.000 0.00 0.00 0.00 4.02
265 266 2.302733 GTCCATTTGCCCATTTTCACCT 59.697 45.455 0.00 0.00 0.00 4.00
266 267 2.302445 TCCATTTGCCCATTTTCACCTG 59.698 45.455 0.00 0.00 0.00 4.00
267 268 2.616001 CCATTTGCCCATTTTCACCTGG 60.616 50.000 0.00 0.00 0.00 4.45
268 269 1.799933 TTTGCCCATTTTCACCTGGT 58.200 45.000 0.00 0.00 0.00 4.00
269 270 1.337118 TTGCCCATTTTCACCTGGTC 58.663 50.000 0.00 0.00 0.00 4.02
270 271 0.893270 TGCCCATTTTCACCTGGTCG 60.893 55.000 0.00 0.00 0.00 4.79
271 272 1.595093 GCCCATTTTCACCTGGTCGG 61.595 60.000 0.00 0.00 39.35 4.79
272 273 0.037590 CCCATTTTCACCTGGTCGGA 59.962 55.000 0.00 0.00 36.31 4.55
273 274 1.546773 CCCATTTTCACCTGGTCGGAA 60.547 52.381 0.00 0.00 36.31 4.30
274 275 1.539827 CCATTTTCACCTGGTCGGAAC 59.460 52.381 0.00 0.00 36.31 3.62
275 276 2.226330 CATTTTCACCTGGTCGGAACA 58.774 47.619 0.00 0.00 36.31 3.18
276 277 2.649531 TTTTCACCTGGTCGGAACAT 57.350 45.000 0.00 0.00 36.31 2.71
277 278 3.773418 TTTTCACCTGGTCGGAACATA 57.227 42.857 0.00 0.00 36.31 2.29
278 279 3.992943 TTTCACCTGGTCGGAACATAT 57.007 42.857 0.00 0.00 36.31 1.78
279 280 3.992943 TTCACCTGGTCGGAACATATT 57.007 42.857 0.00 0.00 36.31 1.28
280 281 3.536956 TCACCTGGTCGGAACATATTC 57.463 47.619 0.00 0.00 36.31 1.75
290 291 2.325583 GAACATATTCCCCAGCGACA 57.674 50.000 0.00 0.00 0.00 4.35
291 292 2.851195 GAACATATTCCCCAGCGACAT 58.149 47.619 0.00 0.00 0.00 3.06
292 293 4.002906 GAACATATTCCCCAGCGACATA 57.997 45.455 0.00 0.00 0.00 2.29
293 294 3.402628 ACATATTCCCCAGCGACATAC 57.597 47.619 0.00 0.00 0.00 2.39
294 295 2.703536 ACATATTCCCCAGCGACATACA 59.296 45.455 0.00 0.00 0.00 2.29
295 296 3.327757 ACATATTCCCCAGCGACATACAT 59.672 43.478 0.00 0.00 0.00 2.29
296 297 4.202461 ACATATTCCCCAGCGACATACATT 60.202 41.667 0.00 0.00 0.00 2.71
297 298 2.799126 TTCCCCAGCGACATACATTT 57.201 45.000 0.00 0.00 0.00 2.32
298 299 2.325583 TCCCCAGCGACATACATTTC 57.674 50.000 0.00 0.00 0.00 2.17
299 300 0.937304 CCCCAGCGACATACATTTCG 59.063 55.000 0.00 0.00 38.31 3.46
300 301 0.937304 CCCAGCGACATACATTTCGG 59.063 55.000 0.50 0.00 35.73 4.30
301 302 1.472552 CCCAGCGACATACATTTCGGA 60.473 52.381 0.50 0.00 35.73 4.55
302 303 2.276201 CCAGCGACATACATTTCGGAA 58.724 47.619 0.50 0.00 35.73 4.30
303 304 2.030457 CCAGCGACATACATTTCGGAAC 59.970 50.000 0.00 0.00 35.73 3.62
304 305 2.670905 CAGCGACATACATTTCGGAACA 59.329 45.455 0.00 0.00 35.73 3.18
305 306 2.930040 AGCGACATACATTTCGGAACAG 59.070 45.455 0.00 0.00 35.73 3.16
306 307 2.927477 GCGACATACATTTCGGAACAGA 59.073 45.455 0.00 0.00 35.73 3.41
307 308 3.000322 GCGACATACATTTCGGAACAGAG 60.000 47.826 0.00 0.00 35.73 3.35
308 309 3.551890 CGACATACATTTCGGAACAGAGG 59.448 47.826 0.00 0.00 0.00 3.69
309 310 3.871594 GACATACATTTCGGAACAGAGGG 59.128 47.826 0.00 0.00 0.00 4.30
310 311 3.517901 ACATACATTTCGGAACAGAGGGA 59.482 43.478 0.00 0.00 0.00 4.20
311 312 2.770164 ACATTTCGGAACAGAGGGAG 57.230 50.000 0.00 0.00 0.00 4.30
317 318 2.376109 TCGGAACAGAGGGAGTATGTC 58.624 52.381 0.00 0.00 27.48 3.06
364 367 6.382859 TCCTGCATCACCACTAATTAACTCTA 59.617 38.462 0.00 0.00 0.00 2.43
377 380 6.712179 AATTAACTCTAGGACCGGAAGTAG 57.288 41.667 9.46 5.37 0.00 2.57
380 383 3.888583 ACTCTAGGACCGGAAGTAGAAG 58.111 50.000 9.46 7.37 0.00 2.85
382 385 4.018597 ACTCTAGGACCGGAAGTAGAAGAA 60.019 45.833 9.46 0.00 0.00 2.52
386 389 2.159212 GGACCGGAAGTAGAAGAAGCTC 60.159 54.545 9.46 0.00 0.00 4.09
388 391 1.473278 CCGGAAGTAGAAGAAGCTCGT 59.527 52.381 0.00 0.00 0.00 4.18
389 392 2.520979 CGGAAGTAGAAGAAGCTCGTG 58.479 52.381 0.00 0.00 0.00 4.35
390 393 2.095161 CGGAAGTAGAAGAAGCTCGTGT 60.095 50.000 0.00 0.00 0.00 4.49
391 394 3.126514 CGGAAGTAGAAGAAGCTCGTGTA 59.873 47.826 0.00 0.00 0.00 2.90
392 395 4.379186 CGGAAGTAGAAGAAGCTCGTGTAA 60.379 45.833 0.00 0.00 0.00 2.41
393 396 5.652518 GGAAGTAGAAGAAGCTCGTGTAAT 58.347 41.667 0.00 0.00 0.00 1.89
394 397 5.517054 GGAAGTAGAAGAAGCTCGTGTAATG 59.483 44.000 0.00 0.00 0.00 1.90
395 398 5.646577 AGTAGAAGAAGCTCGTGTAATGT 57.353 39.130 0.00 0.00 0.00 2.71
396 399 6.026947 AGTAGAAGAAGCTCGTGTAATGTT 57.973 37.500 0.00 0.00 0.00 2.71
397 400 6.094061 AGTAGAAGAAGCTCGTGTAATGTTC 58.906 40.000 0.00 0.00 0.00 3.18
398 401 4.246458 AGAAGAAGCTCGTGTAATGTTCC 58.754 43.478 0.00 0.00 0.00 3.62
402 405 0.370273 GCTCGTGTAATGTTCCTGCG 59.630 55.000 0.00 0.00 0.00 5.18
409 412 2.213499 GTAATGTTCCTGCGGAGATGG 58.787 52.381 5.10 0.00 31.21 3.51
424 427 4.258543 GGAGATGGGATTCGTGTAAAACA 58.741 43.478 0.00 0.00 0.00 2.83
435 438 3.234596 GTGTAAAACAGACACGCTCAC 57.765 47.619 0.00 0.00 38.01 3.51
464 467 3.254060 ACACGAGTATGAACACATGAGC 58.746 45.455 0.00 0.00 0.00 4.26
488 491 2.165319 AAACAGAGTGGCGGTAAGTC 57.835 50.000 0.00 0.00 0.00 3.01
509 512 1.141858 CTGGGAGCCTACCTGAATTCC 59.858 57.143 2.27 0.00 0.00 3.01
656 666 2.677979 GCACTTTCGAACCTCCGCC 61.678 63.158 0.00 0.00 0.00 6.13
658 668 2.813908 CTTTCGAACCTCCGCCCG 60.814 66.667 0.00 0.00 0.00 6.13
692 702 1.301677 GCGCCTCAGGGTTCAGAAAG 61.302 60.000 0.00 0.00 34.45 2.62
696 706 3.425659 GCCTCAGGGTTCAGAAAGAAAT 58.574 45.455 0.00 0.00 38.13 2.17
697 707 3.192212 GCCTCAGGGTTCAGAAAGAAATG 59.808 47.826 0.00 0.00 38.13 2.32
709 738 6.785191 TCAGAAAGAAATGAATAACGCATCC 58.215 36.000 0.00 0.00 0.00 3.51
716 745 6.713903 AGAAATGAATAACGCATCCTGATCAT 59.286 34.615 0.00 0.00 0.00 2.45
717 746 6.492007 AATGAATAACGCATCCTGATCATC 57.508 37.500 0.00 0.00 0.00 2.92
718 747 3.989817 TGAATAACGCATCCTGATCATCG 59.010 43.478 0.00 0.00 0.00 3.84
719 748 1.783284 TAACGCATCCTGATCATCGC 58.217 50.000 0.00 0.00 0.00 4.58
720 749 3.153609 CGCATCCTGATCATCGCG 58.846 61.111 0.00 0.00 36.47 5.87
787 817 1.145945 TGGTTAGTGGTGAATTGCCCA 59.854 47.619 0.00 0.00 0.00 5.36
898 928 2.049618 TTTTGGAATGGCGTGCGC 60.050 55.556 8.17 8.17 41.06 6.09
923 953 1.985116 ACCTTCTCACCGCCTCTCC 60.985 63.158 0.00 0.00 0.00 3.71
941 971 1.530655 CACCCTTTTCCCGTTGGCT 60.531 57.895 0.00 0.00 0.00 4.75
942 972 1.112916 CACCCTTTTCCCGTTGGCTT 61.113 55.000 0.00 0.00 0.00 4.35
943 973 0.826256 ACCCTTTTCCCGTTGGCTTC 60.826 55.000 0.00 0.00 0.00 3.86
952 982 1.153745 CGTTGGCTTCTCCTCCTCG 60.154 63.158 0.00 0.00 35.26 4.63
1019 1062 0.185901 CTCCTCTCCCTCCTCCTCAG 59.814 65.000 0.00 0.00 0.00 3.35
1203 1352 1.000771 TCCTCTCCACCTGACTCCG 60.001 63.158 0.00 0.00 0.00 4.63
1208 1357 2.214181 CTCCACCTGACTCCGTTCCG 62.214 65.000 0.00 0.00 0.00 4.30
1209 1358 2.432628 CACCTGACTCCGTTCCGC 60.433 66.667 0.00 0.00 0.00 5.54
1211 1360 3.382832 CCTGACTCCGTTCCGCCT 61.383 66.667 0.00 0.00 0.00 5.52
1241 1390 2.270352 AGATCTCTAGTCCTGCCTCG 57.730 55.000 0.00 0.00 0.00 4.63
1349 1504 2.936032 GCTCCTCCTGGGTTGGGT 60.936 66.667 0.00 0.00 36.25 4.51
1350 1505 2.539081 GCTCCTCCTGGGTTGGGTT 61.539 63.158 0.00 0.00 36.25 4.11
1351 1506 1.380302 CTCCTCCTGGGTTGGGTTG 59.620 63.158 0.00 0.00 36.25 3.77
1352 1507 2.142292 CTCCTCCTGGGTTGGGTTGG 62.142 65.000 0.00 0.00 36.25 3.77
1353 1508 2.440599 CTCCTGGGTTGGGTTGGG 59.559 66.667 0.00 0.00 0.00 4.12
1366 1521 0.608308 GGTTGGGCTGGGTTACTGTC 60.608 60.000 0.00 0.00 0.00 3.51
1422 1577 3.155093 AGTTTCACACAAGCAAGCAAG 57.845 42.857 0.00 0.00 0.00 4.01
1423 1578 1.589779 GTTTCACACAAGCAAGCAAGC 59.410 47.619 0.00 0.00 0.00 4.01
1424 1579 0.816373 TTCACACAAGCAAGCAAGCA 59.184 45.000 3.19 0.00 36.85 3.91
1425 1580 0.816373 TCACACAAGCAAGCAAGCAA 59.184 45.000 3.19 0.00 36.85 3.91
1589 1744 2.765969 CCATGGGAGTTGCCAGGT 59.234 61.111 2.85 0.00 38.95 4.00
1590 1745 1.998530 CCATGGGAGTTGCCAGGTA 59.001 57.895 2.85 0.00 38.95 3.08
1591 1746 0.394352 CCATGGGAGTTGCCAGGTAC 60.394 60.000 2.85 0.00 38.95 3.34
1592 1747 0.327924 CATGGGAGTTGCCAGGTACA 59.672 55.000 0.00 0.00 38.95 2.90
1612 1770 6.147821 GGTACATACATACACATGCATCTTCC 59.852 42.308 0.00 0.00 35.39 3.46
1698 1871 7.409465 AGTGTTCGAGAGAGTTGAATTTTAC 57.591 36.000 0.00 0.00 43.69 2.01
1731 1904 2.350772 CGCATGGTGTTCACCTTTCTTC 60.351 50.000 20.48 5.68 0.00 2.87
1757 1931 8.519799 TCCCCTGAATAGACAATTTATTTGAC 57.480 34.615 0.00 0.00 38.76 3.18
1786 1960 4.843220 AATTTGCCATCATCCTCGAATC 57.157 40.909 0.00 0.00 0.00 2.52
1936 2110 2.962421 TGAGTCATTTTCCCGCCTTTTT 59.038 40.909 0.00 0.00 0.00 1.94
1969 2164 2.229792 TGTTCTCCAAATCACCACAGC 58.770 47.619 0.00 0.00 0.00 4.40
1998 2193 7.014038 CCCCTCTCAATTTTGGAATATTCTCAG 59.986 40.741 14.95 1.01 0.00 3.35
2007 2202 4.139786 TGGAATATTCTCAGCAGCCAATC 58.860 43.478 14.95 0.00 0.00 2.67
2019 2214 2.223433 GCAGCCAATCACAGTAATCAGC 60.223 50.000 0.00 0.00 0.00 4.26
2024 2219 4.005650 CCAATCACAGTAATCAGCACACT 58.994 43.478 0.00 0.00 0.00 3.55
2082 2305 6.627243 TGTACATAGCTAGTTTGTACAGTGG 58.373 40.000 24.85 0.00 46.41 4.00
2103 2326 3.444916 GCCAATGTGAATGAGAATGCTG 58.555 45.455 0.00 0.00 0.00 4.41
2129 2352 1.069703 CAGAGGTGTGTGCGTTTGATG 60.070 52.381 0.00 0.00 0.00 3.07
2536 2759 3.764466 AAGGTCGGGAGCAGCTCG 61.764 66.667 16.47 6.75 43.51 5.03
2539 2762 4.838486 GTCGGGAGCAGCTCGTCG 62.838 72.222 23.05 23.05 42.47 5.12
2620 2843 3.435186 GGCAACGCCTTCCAGCTC 61.435 66.667 0.00 0.00 46.69 4.09
2645 2868 2.444140 CCCCCTCTCCCCTGTACG 60.444 72.222 0.00 0.00 0.00 3.67
2646 2869 2.444140 CCCCTCTCCCCTGTACGG 60.444 72.222 0.00 0.00 0.00 4.02
2647 2870 2.687902 CCCTCTCCCCTGTACGGA 59.312 66.667 2.31 0.00 33.16 4.69
2649 2872 1.455959 CCTCTCCCCTGTACGGAGG 60.456 68.421 13.44 5.72 46.01 4.30
2650 2873 1.613610 CTCTCCCCTGTACGGAGGA 59.386 63.158 13.44 9.73 46.01 3.71
2781 3004 2.753966 CGCACATGCCCTTCTTCGG 61.754 63.158 0.00 0.00 37.91 4.30
3200 3428 4.208460 CGGTATATTTTCAGCCAGTGTACG 59.792 45.833 0.00 0.00 0.00 3.67
3250 3478 1.481683 GTAGTATTGCTACGCGCGC 59.518 57.895 32.58 23.91 40.43 6.86
3268 3496 0.247655 GCGTGTGTGTGTGTGTCTTG 60.248 55.000 0.00 0.00 0.00 3.02
3269 3497 1.075542 CGTGTGTGTGTGTGTCTTGT 58.924 50.000 0.00 0.00 0.00 3.16
3270 3498 2.263945 CGTGTGTGTGTGTGTCTTGTA 58.736 47.619 0.00 0.00 0.00 2.41
3271 3499 2.028763 CGTGTGTGTGTGTGTCTTGTAC 59.971 50.000 0.00 0.00 0.00 2.90
3272 3500 2.997303 GTGTGTGTGTGTGTCTTGTACA 59.003 45.455 0.00 0.00 35.06 2.90
3273 3501 3.062099 GTGTGTGTGTGTGTCTTGTACAG 59.938 47.826 0.00 0.00 39.29 2.74
3274 3502 3.259064 GTGTGTGTGTGTCTTGTACAGT 58.741 45.455 0.00 0.00 39.29 3.55
3275 3503 3.682858 GTGTGTGTGTGTCTTGTACAGTT 59.317 43.478 0.00 0.00 39.29 3.16
3342 3570 1.996191 GCACGACACTTCCATCTCTTC 59.004 52.381 0.00 0.00 0.00 2.87
3445 3677 4.610945 CGATGTAAAATTCCCCATTGCTC 58.389 43.478 0.00 0.00 0.00 4.26
3490 3735 8.937835 TCTTTAGAAATGGAGGATACATCATCA 58.062 33.333 6.25 0.00 39.21 3.07
3491 3736 9.736414 CTTTAGAAATGGAGGATACATCATCAT 57.264 33.333 6.25 0.00 39.21 2.45
3492 3737 9.730705 TTTAGAAATGGAGGATACATCATCATC 57.269 33.333 6.25 0.00 42.52 2.92
3493 3738 7.325725 AGAAATGGAGGATACATCATCATCA 57.674 36.000 6.25 0.00 44.56 3.07
3494 3739 7.929959 AGAAATGGAGGATACATCATCATCAT 58.070 34.615 6.25 0.00 44.56 2.45
3495 3740 8.047911 AGAAATGGAGGATACATCATCATCATC 58.952 37.037 6.25 0.00 44.56 2.92
3496 3741 6.886178 ATGGAGGATACATCATCATCATCA 57.114 37.500 6.25 0.00 44.56 3.07
3498 3743 6.885922 TGGAGGATACATCATCATCATCATC 58.114 40.000 6.25 0.00 44.56 2.92
3501 3746 7.658167 GGAGGATACATCATCATCATCATCATC 59.342 40.741 6.25 0.00 44.56 2.92
3502 3747 8.325477 AGGATACATCATCATCATCATCATCT 57.675 34.615 0.00 0.00 41.41 2.90
3522 4221 8.908786 TCATCTATTCTAACAATTCATGACCC 57.091 34.615 0.00 0.00 0.00 4.46
3535 4234 4.694760 TCATGACCCTGTGATTCCTATG 57.305 45.455 0.00 0.00 0.00 2.23
3536 4235 4.040047 TCATGACCCTGTGATTCCTATGT 58.960 43.478 0.00 0.00 0.00 2.29
3537 4236 5.215845 TCATGACCCTGTGATTCCTATGTA 58.784 41.667 0.00 0.00 0.00 2.29
3538 4237 5.070446 TCATGACCCTGTGATTCCTATGTAC 59.930 44.000 0.00 0.00 0.00 2.90
3539 4238 4.620723 TGACCCTGTGATTCCTATGTACT 58.379 43.478 0.00 0.00 0.00 2.73
3540 4239 4.649674 TGACCCTGTGATTCCTATGTACTC 59.350 45.833 0.00 0.00 0.00 2.59
3541 4240 3.967987 ACCCTGTGATTCCTATGTACTCC 59.032 47.826 0.00 0.00 0.00 3.85
3542 4241 3.325135 CCCTGTGATTCCTATGTACTCCC 59.675 52.174 0.00 0.00 0.00 4.30
3543 4242 4.227197 CCTGTGATTCCTATGTACTCCCT 58.773 47.826 0.00 0.00 0.00 4.20
3544 4243 4.282195 CCTGTGATTCCTATGTACTCCCTC 59.718 50.000 0.00 0.00 0.00 4.30
3545 4244 4.223953 TGTGATTCCTATGTACTCCCTCC 58.776 47.826 0.00 0.00 0.00 4.30
3546 4245 3.256136 GTGATTCCTATGTACTCCCTCCG 59.744 52.174 0.00 0.00 0.00 4.63
3547 4246 3.117246 TGATTCCTATGTACTCCCTCCGT 60.117 47.826 0.00 0.00 0.00 4.69
3548 4247 3.393426 TTCCTATGTACTCCCTCCGTT 57.607 47.619 0.00 0.00 0.00 4.44
3549 4248 2.941480 TCCTATGTACTCCCTCCGTTC 58.059 52.381 0.00 0.00 0.00 3.95
3550 4249 1.962100 CCTATGTACTCCCTCCGTTCC 59.038 57.143 0.00 0.00 0.00 3.62
3551 4250 1.607628 CTATGTACTCCCTCCGTTCCG 59.392 57.143 0.00 0.00 0.00 4.30
3552 4251 0.033796 ATGTACTCCCTCCGTTCCGA 60.034 55.000 0.00 0.00 0.00 4.55
3553 4252 0.251297 TGTACTCCCTCCGTTCCGAA 60.251 55.000 0.00 0.00 0.00 4.30
3554 4253 0.172127 GTACTCCCTCCGTTCCGAAC 59.828 60.000 0.76 0.76 0.00 3.95
3555 4254 0.038744 TACTCCCTCCGTTCCGAACT 59.961 55.000 9.55 0.00 0.00 3.01
3556 4255 0.038744 ACTCCCTCCGTTCCGAACTA 59.961 55.000 9.55 0.00 0.00 2.24
3557 4256 0.739561 CTCCCTCCGTTCCGAACTAG 59.260 60.000 9.55 6.61 0.00 2.57
3558 4257 0.038744 TCCCTCCGTTCCGAACTAGT 59.961 55.000 9.55 0.00 0.00 2.57
3559 4258 1.281867 TCCCTCCGTTCCGAACTAGTA 59.718 52.381 9.55 0.00 0.00 1.82
3560 4259 2.094675 CCCTCCGTTCCGAACTAGTAA 58.905 52.381 9.55 0.00 0.00 2.24
3561 4260 2.692041 CCCTCCGTTCCGAACTAGTAAT 59.308 50.000 9.55 0.00 0.00 1.89
3562 4261 3.131755 CCCTCCGTTCCGAACTAGTAATT 59.868 47.826 9.55 0.00 0.00 1.40
3563 4262 4.357996 CCTCCGTTCCGAACTAGTAATTC 58.642 47.826 9.55 0.00 0.00 2.17
3564 4263 4.019919 TCCGTTCCGAACTAGTAATTCG 57.980 45.455 6.77 6.77 46.67 3.34
3598 4297 4.276431 ACATGTTTGGTTAGGGTTACGTTG 59.724 41.667 0.00 0.00 0.00 4.10
3601 4300 4.946157 TGTTTGGTTAGGGTTACGTTGAAA 59.054 37.500 0.00 0.00 0.00 2.69
3639 4338 4.280436 TGAGGTTACACTACATTGTGGG 57.720 45.455 5.10 0.00 41.84 4.61
3649 4353 0.250989 ACATTGTGGGTGTAACGGGG 60.251 55.000 0.00 0.00 38.12 5.73
3659 4363 1.198408 GTGTAACGGGGCTTTTGCTAC 59.802 52.381 0.00 0.00 46.54 3.58
3666 4370 2.607038 CGGGGCTTTTGCTACTTTTGTC 60.607 50.000 0.00 0.00 46.54 3.18
3678 4382 4.024809 GCTACTTTTGTCTGGTTGACTCAC 60.025 45.833 0.00 0.00 45.54 3.51
3709 4413 3.435275 ACAGAGAGAAGGACTACATGCA 58.565 45.455 0.00 0.00 0.00 3.96
3775 4774 6.264067 AGGTGGATGAAAGAGAAACTTGAAAG 59.736 38.462 0.00 0.00 38.98 2.62
3779 4778 8.748412 TGGATGAAAGAGAAACTTGAAAGAAAA 58.252 29.630 0.00 0.00 38.98 2.29
3780 4779 9.586435 GGATGAAAGAGAAACTTGAAAGAAAAA 57.414 29.630 0.00 0.00 38.98 1.94
3804 4803 9.830294 AAAAACTTTGCATTCTCTTTTTCTTTG 57.170 25.926 0.00 0.00 0.00 2.77
3805 4804 7.543947 AACTTTGCATTCTCTTTTTCTTTGG 57.456 32.000 0.00 0.00 0.00 3.28
3806 4805 6.643388 ACTTTGCATTCTCTTTTTCTTTGGT 58.357 32.000 0.00 0.00 0.00 3.67
3807 4806 6.536224 ACTTTGCATTCTCTTTTTCTTTGGTG 59.464 34.615 0.00 0.00 0.00 4.17
3808 4807 5.850557 TGCATTCTCTTTTTCTTTGGTGA 57.149 34.783 0.00 0.00 0.00 4.02
3809 4808 6.219417 TGCATTCTCTTTTTCTTTGGTGAA 57.781 33.333 0.00 0.00 0.00 3.18
3810 4809 6.638610 TGCATTCTCTTTTTCTTTGGTGAAA 58.361 32.000 0.00 0.00 34.55 2.69
3811 4810 7.102346 TGCATTCTCTTTTTCTTTGGTGAAAA 58.898 30.769 0.00 0.00 42.12 2.29
3812 4811 7.769970 TGCATTCTCTTTTTCTTTGGTGAAAAT 59.230 29.630 3.73 0.00 42.94 1.82
3813 4812 9.260002 GCATTCTCTTTTTCTTTGGTGAAAATA 57.740 29.630 3.73 0.00 42.94 1.40
3858 4857 5.967088 TCTCTTAGCAACAATACCTCTCAC 58.033 41.667 0.00 0.00 0.00 3.51
3869 4868 9.173021 CAACAATACCTCTCACCATACATTTAA 57.827 33.333 0.00 0.00 0.00 1.52
3962 4966 9.692749 TTATATTTAGAAGCAGAACTATCGTGG 57.307 33.333 0.00 0.00 0.00 4.94
3963 4967 5.654603 TTTAGAAGCAGAACTATCGTGGA 57.345 39.130 0.00 0.00 0.00 4.02
3964 4968 5.654603 TTAGAAGCAGAACTATCGTGGAA 57.345 39.130 0.00 0.00 0.00 3.53
3965 4969 4.537135 AGAAGCAGAACTATCGTGGAAA 57.463 40.909 0.00 0.00 0.00 3.13
3966 4970 4.894784 AGAAGCAGAACTATCGTGGAAAA 58.105 39.130 0.00 0.00 0.00 2.29
3967 4971 5.491982 AGAAGCAGAACTATCGTGGAAAAT 58.508 37.500 0.00 0.00 0.00 1.82
3968 4972 6.640518 AGAAGCAGAACTATCGTGGAAAATA 58.359 36.000 0.00 0.00 0.00 1.40
3969 4973 7.275920 AGAAGCAGAACTATCGTGGAAAATAT 58.724 34.615 0.00 0.00 0.00 1.28
3970 4974 8.421784 AGAAGCAGAACTATCGTGGAAAATATA 58.578 33.333 0.00 0.00 0.00 0.86
3971 4975 9.209175 GAAGCAGAACTATCGTGGAAAATATAT 57.791 33.333 0.00 0.00 0.00 0.86
3972 4976 9.561069 AAGCAGAACTATCGTGGAAAATATATT 57.439 29.630 0.00 0.00 0.00 1.28
3982 4986 9.778741 ATCGTGGAAAATATATTAGAAGCAGAA 57.221 29.630 0.00 0.00 0.00 3.02
3983 4987 9.042008 TCGTGGAAAATATATTAGAAGCAGAAC 57.958 33.333 0.00 0.00 0.00 3.01
3984 4988 9.046296 CGTGGAAAATATATTAGAAGCAGAACT 57.954 33.333 0.00 0.00 0.00 3.01
3994 4998 9.817809 ATATTAGAAGCAGAACTATCGTGAAAA 57.182 29.630 0.00 0.00 0.00 2.29
3995 4999 7.956420 TTAGAAGCAGAACTATCGTGAAAAA 57.044 32.000 0.00 0.00 0.00 1.94
3996 5000 8.547967 TTAGAAGCAGAACTATCGTGAAAAAT 57.452 30.769 0.00 0.00 0.00 1.82
3997 5001 7.440523 AGAAGCAGAACTATCGTGAAAAATT 57.559 32.000 0.00 0.00 0.00 1.82
3998 5002 7.875971 AGAAGCAGAACTATCGTGAAAAATTT 58.124 30.769 0.00 0.00 0.00 1.82
3999 5003 8.999431 AGAAGCAGAACTATCGTGAAAAATTTA 58.001 29.630 0.00 0.00 0.00 1.40
4000 5004 8.950403 AAGCAGAACTATCGTGAAAAATTTAC 57.050 30.769 0.00 0.00 0.00 2.01
4001 5005 7.527457 AGCAGAACTATCGTGAAAAATTTACC 58.473 34.615 0.00 0.00 0.00 2.85
4002 5006 7.174253 AGCAGAACTATCGTGAAAAATTTACCA 59.826 33.333 0.00 0.00 0.00 3.25
4003 5007 7.968405 GCAGAACTATCGTGAAAAATTTACCAT 59.032 33.333 0.00 0.00 0.00 3.55
4004 5008 9.490663 CAGAACTATCGTGAAAAATTTACCATC 57.509 33.333 0.00 0.00 0.00 3.51
4005 5009 9.449719 AGAACTATCGTGAAAAATTTACCATCT 57.550 29.630 0.00 0.00 0.00 2.90
4006 5010 9.704098 GAACTATCGTGAAAAATTTACCATCTC 57.296 33.333 0.00 0.00 0.00 2.75
4020 5024 9.976511 AATTTACCATCTCTAAATTATCGTCGA 57.023 29.630 0.00 0.00 33.79 4.20
4024 5028 8.888579 ACCATCTCTAAATTATCGTCGAAAAT 57.111 30.769 0.00 0.00 0.00 1.82
4026 5030 9.586150 CCATCTCTAAATTATCGTCGAAAATTG 57.414 33.333 0.00 0.00 0.00 2.32
4049 5053 9.823647 ATTGATACGACTTTCTTATCAATCACT 57.176 29.630 16.44 2.98 46.40 3.41
4051 5055 5.786401 ACGACTTTCTTATCAATCACTGC 57.214 39.130 0.00 0.00 0.00 4.40
4059 5063 1.108776 ATCAATCACTGCACATGCCC 58.891 50.000 0.49 0.00 41.18 5.36
4064 5068 0.399833 TCACTGCACATGCCCTAACA 59.600 50.000 0.49 0.00 41.18 2.41
4065 5069 1.202867 TCACTGCACATGCCCTAACAA 60.203 47.619 0.49 0.00 41.18 2.83
4071 5075 1.072266 ACATGCCCTAACAACCAGGA 58.928 50.000 0.00 0.00 34.91 3.86
4076 5080 1.078426 CCTAACAACCAGGAGCGGG 60.078 63.158 0.00 0.00 34.91 6.13
4088 5092 0.876342 GGAGCGGGTGTGATCGATTC 60.876 60.000 0.00 0.00 0.00 2.52
4091 5095 0.460284 GCGGGTGTGATCGATTCTGT 60.460 55.000 0.00 0.00 0.00 3.41
4132 5139 0.034670 ACAGCTTCTGATTCCAGCCC 60.035 55.000 0.29 0.00 40.20 5.19
4135 5142 1.092345 GCTTCTGATTCCAGCCCGAC 61.092 60.000 0.00 0.00 40.20 4.79
4138 5145 0.614697 TCTGATTCCAGCCCGACTCA 60.615 55.000 0.00 0.00 40.20 3.41
4139 5146 0.250234 CTGATTCCAGCCCGACTCAA 59.750 55.000 0.00 0.00 33.07 3.02
4140 5147 0.911769 TGATTCCAGCCCGACTCAAT 59.088 50.000 0.00 0.00 0.00 2.57
4141 5148 1.134401 TGATTCCAGCCCGACTCAATC 60.134 52.381 0.00 0.00 0.00 2.67
4142 5149 0.911769 ATTCCAGCCCGACTCAATCA 59.088 50.000 0.00 0.00 0.00 2.57
4143 5150 0.690192 TTCCAGCCCGACTCAATCAA 59.310 50.000 0.00 0.00 0.00 2.57
4144 5151 0.036388 TCCAGCCCGACTCAATCAAC 60.036 55.000 0.00 0.00 0.00 3.18
4145 5152 1.026718 CCAGCCCGACTCAATCAACC 61.027 60.000 0.00 0.00 0.00 3.77
4146 5153 0.321564 CAGCCCGACTCAATCAACCA 60.322 55.000 0.00 0.00 0.00 3.67
4154 5161 4.041723 CGACTCAATCAACCAAACCAAAC 58.958 43.478 0.00 0.00 0.00 2.93
4157 5164 2.166459 TCAATCAACCAAACCAAACGCA 59.834 40.909 0.00 0.00 0.00 5.24
4162 5169 1.765230 ACCAAACCAAACGCAGGTAA 58.235 45.000 0.00 0.00 38.76 2.85
4178 5185 0.455464 GTAACGGTTTTGGATGGCGC 60.455 55.000 0.00 0.00 0.00 6.53
4194 5202 1.883084 CGCTGTAATCAGGTCCGGC 60.883 63.158 0.00 0.00 41.57 6.13
4195 5203 1.220749 GCTGTAATCAGGTCCGGCA 59.779 57.895 0.00 0.00 41.57 5.69
4206 5214 0.965363 GGTCCGGCAAACACATCCAT 60.965 55.000 0.00 0.00 0.00 3.41
4207 5215 0.171007 GTCCGGCAAACACATCCATG 59.829 55.000 0.00 0.00 0.00 3.66
4211 5219 1.132262 CGGCAAACACATCCATGGTAC 59.868 52.381 12.58 0.00 0.00 3.34
4212 5220 2.446435 GGCAAACACATCCATGGTACT 58.554 47.619 12.58 0.00 0.00 2.73
4213 5221 2.164219 GGCAAACACATCCATGGTACTG 59.836 50.000 12.58 10.56 0.00 2.74
4226 5234 6.888105 TCCATGGTACTGTATATATGCATGG 58.112 40.000 12.58 10.83 37.70 3.66
4258 5289 6.758416 TGCACAAAATTGTTACAATAACTGCA 59.242 30.769 19.47 19.47 39.91 4.41
4274 5305 2.290577 ACTGCAAAGGAATCCTGACTCC 60.291 50.000 0.90 0.00 32.13 3.85
4275 5306 1.988107 TGCAAAGGAATCCTGACTCCT 59.012 47.619 0.90 0.00 44.26 3.69
4289 6687 1.828768 CTCCTGACAGGGAGGATGC 59.171 63.158 21.56 0.00 46.63 3.91
4292 6690 1.617018 CCTGACAGGGAGGATGCGAA 61.617 60.000 14.26 0.00 31.48 4.70
4301 6699 3.392616 AGGGAGGATGCGAATATCAGTTT 59.607 43.478 0.00 0.00 0.00 2.66
4304 6702 4.503991 GGAGGATGCGAATATCAGTTTCCT 60.504 45.833 0.00 0.00 35.12 3.36
4321 6719 4.431416 TTCCTGTAGAAGGCAAAACAGA 57.569 40.909 9.85 0.00 46.92 3.41
4339 6737 0.250338 GAAACGGCTTGGACCAGAGT 60.250 55.000 0.00 0.00 0.00 3.24
4399 6797 4.214119 GCATGAAGTCTGACTAAAGTGCAA 59.786 41.667 21.76 3.30 0.00 4.08
4430 6828 3.498661 GGGAGAAAAGAAAAGAGCCAGGA 60.499 47.826 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 4.341783 AGGTGGTGCTCTGCTGCC 62.342 66.667 0.00 0.00 0.00 4.85
7 8 3.054503 CAGGTGGTGCTCTGCTGC 61.055 66.667 0.00 0.00 0.00 5.25
8 9 2.359602 CCAGGTGGTGCTCTGCTG 60.360 66.667 0.00 0.00 0.00 4.41
9 10 3.644606 CCCAGGTGGTGCTCTGCT 61.645 66.667 0.00 0.00 0.00 4.24
49 50 3.465403 CTCCTCTCCCACGCCAGG 61.465 72.222 0.00 0.00 0.00 4.45
50 51 4.154347 GCTCCTCTCCCACGCCAG 62.154 72.222 0.00 0.00 0.00 4.85
98 99 3.775654 CACTCCACCTCCGCCTCC 61.776 72.222 0.00 0.00 0.00 4.30
99 100 4.459089 GCACTCCACCTCCGCCTC 62.459 72.222 0.00 0.00 0.00 4.70
151 152 3.775654 CACTCCACCTCCGCCTCC 61.776 72.222 0.00 0.00 0.00 4.30
152 153 4.459089 GCACTCCACCTCCGCCTC 62.459 72.222 0.00 0.00 0.00 4.70
175 176 4.148825 CTTCCACCTCCGCCTCCG 62.149 72.222 0.00 0.00 0.00 4.63
176 177 2.683933 TCTTCCACCTCCGCCTCC 60.684 66.667 0.00 0.00 0.00 4.30
177 178 2.579738 GTCTTCCACCTCCGCCTC 59.420 66.667 0.00 0.00 0.00 4.70
178 179 3.382832 CGTCTTCCACCTCCGCCT 61.383 66.667 0.00 0.00 0.00 5.52
180 181 4.070552 AGCGTCTTCCACCTCCGC 62.071 66.667 0.00 0.00 44.35 5.54
181 182 2.125912 CAGCGTCTTCCACCTCCG 60.126 66.667 0.00 0.00 0.00 4.63
182 183 1.216710 CTCAGCGTCTTCCACCTCC 59.783 63.158 0.00 0.00 0.00 4.30
183 184 1.216710 CCTCAGCGTCTTCCACCTC 59.783 63.158 0.00 0.00 0.00 3.85
184 185 0.832135 TTCCTCAGCGTCTTCCACCT 60.832 55.000 0.00 0.00 0.00 4.00
185 186 0.390472 CTTCCTCAGCGTCTTCCACC 60.390 60.000 0.00 0.00 0.00 4.61
186 187 0.603569 TCTTCCTCAGCGTCTTCCAC 59.396 55.000 0.00 0.00 0.00 4.02
187 188 1.205655 CATCTTCCTCAGCGTCTTCCA 59.794 52.381 0.00 0.00 0.00 3.53
188 189 1.478510 TCATCTTCCTCAGCGTCTTCC 59.521 52.381 0.00 0.00 0.00 3.46
189 190 2.535331 GTCATCTTCCTCAGCGTCTTC 58.465 52.381 0.00 0.00 0.00 2.87
190 191 1.135257 CGTCATCTTCCTCAGCGTCTT 60.135 52.381 0.00 0.00 0.00 3.01
191 192 0.453793 CGTCATCTTCCTCAGCGTCT 59.546 55.000 0.00 0.00 0.00 4.18
192 193 0.526524 CCGTCATCTTCCTCAGCGTC 60.527 60.000 0.00 0.00 0.00 5.19
193 194 0.965866 TCCGTCATCTTCCTCAGCGT 60.966 55.000 0.00 0.00 0.00 5.07
194 195 0.526524 GTCCGTCATCTTCCTCAGCG 60.527 60.000 0.00 0.00 0.00 5.18
195 196 0.532573 TGTCCGTCATCTTCCTCAGC 59.467 55.000 0.00 0.00 0.00 4.26
196 197 2.095461 TCTGTCCGTCATCTTCCTCAG 58.905 52.381 0.00 0.00 0.00 3.35
197 198 2.215942 TCTGTCCGTCATCTTCCTCA 57.784 50.000 0.00 0.00 0.00 3.86
198 199 3.131223 TGAATCTGTCCGTCATCTTCCTC 59.869 47.826 0.00 0.00 0.00 3.71
199 200 3.099905 TGAATCTGTCCGTCATCTTCCT 58.900 45.455 0.00 0.00 0.00 3.36
200 201 3.526931 TGAATCTGTCCGTCATCTTCC 57.473 47.619 0.00 0.00 0.00 3.46
201 202 4.932200 ACTTTGAATCTGTCCGTCATCTTC 59.068 41.667 0.00 0.00 0.00 2.87
202 203 4.899502 ACTTTGAATCTGTCCGTCATCTT 58.100 39.130 0.00 0.00 0.00 2.40
203 204 4.543590 ACTTTGAATCTGTCCGTCATCT 57.456 40.909 0.00 0.00 0.00 2.90
204 205 5.179368 TCAAACTTTGAATCTGTCCGTCATC 59.821 40.000 1.47 0.00 36.59 2.92
205 206 5.063204 TCAAACTTTGAATCTGTCCGTCAT 58.937 37.500 1.47 0.00 36.59 3.06
206 207 4.447290 TCAAACTTTGAATCTGTCCGTCA 58.553 39.130 1.47 0.00 36.59 4.35
207 208 5.418310 TTCAAACTTTGAATCTGTCCGTC 57.582 39.130 12.12 0.00 44.21 4.79
217 218 1.760029 GCCCCCAGTTCAAACTTTGAA 59.240 47.619 12.12 12.12 46.68 2.69
218 219 1.342474 TGCCCCCAGTTCAAACTTTGA 60.342 47.619 0.00 0.00 37.08 2.69
219 220 1.118838 TGCCCCCAGTTCAAACTTTG 58.881 50.000 0.00 0.00 37.08 2.77
220 221 2.101640 ATGCCCCCAGTTCAAACTTT 57.898 45.000 0.00 0.00 37.08 2.66
221 222 2.990740 TATGCCCCCAGTTCAAACTT 57.009 45.000 0.00 0.00 37.08 2.66
222 223 2.990740 TTATGCCCCCAGTTCAAACT 57.009 45.000 0.00 0.00 40.60 2.66
223 224 2.233676 CCTTTATGCCCCCAGTTCAAAC 59.766 50.000 0.00 0.00 0.00 2.93
224 225 2.158234 ACCTTTATGCCCCCAGTTCAAA 60.158 45.455 0.00 0.00 0.00 2.69
225 226 1.431243 ACCTTTATGCCCCCAGTTCAA 59.569 47.619 0.00 0.00 0.00 2.69
226 227 1.005450 GACCTTTATGCCCCCAGTTCA 59.995 52.381 0.00 0.00 0.00 3.18
227 228 1.685180 GGACCTTTATGCCCCCAGTTC 60.685 57.143 0.00 0.00 0.00 3.01
228 229 0.335019 GGACCTTTATGCCCCCAGTT 59.665 55.000 0.00 0.00 0.00 3.16
229 230 0.849094 TGGACCTTTATGCCCCCAGT 60.849 55.000 0.00 0.00 0.00 4.00
230 231 0.557729 ATGGACCTTTATGCCCCCAG 59.442 55.000 0.00 0.00 0.00 4.45
231 232 1.014804 AATGGACCTTTATGCCCCCA 58.985 50.000 0.00 0.00 0.00 4.96
232 233 1.762370 CAAATGGACCTTTATGCCCCC 59.238 52.381 0.00 0.00 0.00 5.40
233 234 1.138859 GCAAATGGACCTTTATGCCCC 59.861 52.381 12.35 0.00 0.00 5.80
234 235 1.138859 GGCAAATGGACCTTTATGCCC 59.861 52.381 22.30 12.55 45.84 5.36
235 236 2.602257 GGCAAATGGACCTTTATGCC 57.398 50.000 20.29 20.29 45.54 4.40
236 237 2.602257 GGGCAAATGGACCTTTATGC 57.398 50.000 13.87 13.87 43.78 3.14
244 245 2.302733 AGGTGAAAATGGGCAAATGGAC 59.697 45.455 0.00 0.00 0.00 4.02
245 246 2.302445 CAGGTGAAAATGGGCAAATGGA 59.698 45.455 0.00 0.00 0.00 3.41
246 247 2.616001 CCAGGTGAAAATGGGCAAATGG 60.616 50.000 0.00 0.00 32.63 3.16
247 248 2.038820 ACCAGGTGAAAATGGGCAAATG 59.961 45.455 0.00 0.00 41.13 2.32
248 249 2.302733 GACCAGGTGAAAATGGGCAAAT 59.697 45.455 0.00 0.00 44.69 2.32
249 250 1.691434 GACCAGGTGAAAATGGGCAAA 59.309 47.619 0.00 0.00 44.69 3.68
250 251 1.337118 GACCAGGTGAAAATGGGCAA 58.663 50.000 0.00 0.00 44.69 4.52
251 252 0.893270 CGACCAGGTGAAAATGGGCA 60.893 55.000 0.00 0.00 45.70 5.36
252 253 1.595093 CCGACCAGGTGAAAATGGGC 61.595 60.000 0.00 0.00 41.60 5.36
253 254 0.037590 TCCGACCAGGTGAAAATGGG 59.962 55.000 0.00 0.00 41.13 4.00
254 255 1.539827 GTTCCGACCAGGTGAAAATGG 59.460 52.381 0.00 0.00 42.60 3.16
255 256 2.226330 TGTTCCGACCAGGTGAAAATG 58.774 47.619 0.00 0.00 41.99 2.32
256 257 2.649531 TGTTCCGACCAGGTGAAAAT 57.350 45.000 0.00 0.00 41.99 1.82
257 258 2.649531 ATGTTCCGACCAGGTGAAAA 57.350 45.000 0.00 0.00 41.99 2.29
258 259 3.992943 ATATGTTCCGACCAGGTGAAA 57.007 42.857 0.00 0.00 41.99 2.69
259 260 3.370103 GGAATATGTTCCGACCAGGTGAA 60.370 47.826 5.38 0.00 44.18 3.18
260 261 2.169769 GGAATATGTTCCGACCAGGTGA 59.830 50.000 5.38 0.00 44.18 4.02
261 262 2.561569 GGAATATGTTCCGACCAGGTG 58.438 52.381 5.38 0.00 44.18 4.00
271 272 2.325583 TGTCGCTGGGGAATATGTTC 57.674 50.000 0.00 0.00 0.00 3.18
272 273 3.135712 TGTATGTCGCTGGGGAATATGTT 59.864 43.478 0.00 0.00 0.00 2.71
273 274 2.703536 TGTATGTCGCTGGGGAATATGT 59.296 45.455 0.00 0.00 0.00 2.29
274 275 3.401033 TGTATGTCGCTGGGGAATATG 57.599 47.619 0.00 0.00 0.00 1.78
275 276 4.640771 AATGTATGTCGCTGGGGAATAT 57.359 40.909 0.00 0.00 0.00 1.28
276 277 4.385825 GAAATGTATGTCGCTGGGGAATA 58.614 43.478 0.00 0.00 0.00 1.75
277 278 3.214328 GAAATGTATGTCGCTGGGGAAT 58.786 45.455 0.00 0.00 0.00 3.01
278 279 2.639065 GAAATGTATGTCGCTGGGGAA 58.361 47.619 0.00 0.00 0.00 3.97
279 280 1.472552 CGAAATGTATGTCGCTGGGGA 60.473 52.381 0.00 0.00 0.00 4.81
280 281 0.937304 CGAAATGTATGTCGCTGGGG 59.063 55.000 0.00 0.00 0.00 4.96
281 282 0.937304 CCGAAATGTATGTCGCTGGG 59.063 55.000 0.00 0.00 35.93 4.45
282 283 1.934589 TCCGAAATGTATGTCGCTGG 58.065 50.000 0.00 0.00 35.93 4.85
283 284 2.670905 TGTTCCGAAATGTATGTCGCTG 59.329 45.455 0.00 0.00 35.93 5.18
284 285 2.930040 CTGTTCCGAAATGTATGTCGCT 59.070 45.455 0.00 0.00 35.93 4.93
285 286 2.927477 TCTGTTCCGAAATGTATGTCGC 59.073 45.455 0.00 0.00 35.93 5.19
286 287 3.551890 CCTCTGTTCCGAAATGTATGTCG 59.448 47.826 0.00 0.00 37.01 4.35
287 288 3.871594 CCCTCTGTTCCGAAATGTATGTC 59.128 47.826 0.00 0.00 0.00 3.06
288 289 3.517901 TCCCTCTGTTCCGAAATGTATGT 59.482 43.478 0.00 0.00 0.00 2.29
289 290 4.122776 CTCCCTCTGTTCCGAAATGTATG 58.877 47.826 0.00 0.00 0.00 2.39
290 291 3.775316 ACTCCCTCTGTTCCGAAATGTAT 59.225 43.478 0.00 0.00 0.00 2.29
291 292 3.170717 ACTCCCTCTGTTCCGAAATGTA 58.829 45.455 0.00 0.00 0.00 2.29
292 293 1.978580 ACTCCCTCTGTTCCGAAATGT 59.021 47.619 0.00 0.00 0.00 2.71
293 294 2.770164 ACTCCCTCTGTTCCGAAATG 57.230 50.000 0.00 0.00 0.00 2.32
294 295 3.775316 ACATACTCCCTCTGTTCCGAAAT 59.225 43.478 0.00 0.00 0.00 2.17
295 296 3.170717 ACATACTCCCTCTGTTCCGAAA 58.829 45.455 0.00 0.00 0.00 3.46
296 297 2.758979 GACATACTCCCTCTGTTCCGAA 59.241 50.000 0.00 0.00 0.00 4.30
297 298 2.376109 GACATACTCCCTCTGTTCCGA 58.624 52.381 0.00 0.00 0.00 4.55
298 299 1.065701 CGACATACTCCCTCTGTTCCG 59.934 57.143 0.00 0.00 0.00 4.30
299 300 1.202428 GCGACATACTCCCTCTGTTCC 60.202 57.143 0.00 0.00 0.00 3.62
300 301 1.476891 TGCGACATACTCCCTCTGTTC 59.523 52.381 0.00 0.00 0.00 3.18
301 302 1.557099 TGCGACATACTCCCTCTGTT 58.443 50.000 0.00 0.00 0.00 3.16
302 303 1.410517 CATGCGACATACTCCCTCTGT 59.589 52.381 0.00 0.00 0.00 3.41
303 304 1.410517 ACATGCGACATACTCCCTCTG 59.589 52.381 0.00 0.00 0.00 3.35
304 305 1.683917 GACATGCGACATACTCCCTCT 59.316 52.381 0.00 0.00 0.00 3.69
305 306 1.409064 TGACATGCGACATACTCCCTC 59.591 52.381 0.00 0.00 0.00 4.30
306 307 1.137086 GTGACATGCGACATACTCCCT 59.863 52.381 0.00 0.00 0.00 4.20
307 308 1.137086 AGTGACATGCGACATACTCCC 59.863 52.381 0.00 0.00 0.00 4.30
308 309 2.196749 CAGTGACATGCGACATACTCC 58.803 52.381 0.00 0.00 0.00 3.85
309 310 2.196749 CCAGTGACATGCGACATACTC 58.803 52.381 0.00 0.00 0.00 2.59
310 311 1.134699 CCCAGTGACATGCGACATACT 60.135 52.381 0.00 0.00 0.00 2.12
311 312 1.290203 CCCAGTGACATGCGACATAC 58.710 55.000 0.00 0.00 0.00 2.39
317 318 1.642037 CTCTTGCCCAGTGACATGCG 61.642 60.000 0.00 0.00 0.00 4.73
364 367 1.826096 GCTTCTTCTACTTCCGGTCCT 59.174 52.381 0.00 0.00 0.00 3.85
377 380 4.092091 CAGGAACATTACACGAGCTTCTTC 59.908 45.833 0.00 0.00 0.00 2.87
380 383 2.094417 GCAGGAACATTACACGAGCTTC 59.906 50.000 0.00 0.00 0.00 3.86
382 385 1.726853 GCAGGAACATTACACGAGCT 58.273 50.000 0.00 0.00 0.00 4.09
398 401 0.877649 CACGAATCCCATCTCCGCAG 60.878 60.000 0.00 0.00 0.00 5.18
402 405 4.258543 TGTTTTACACGAATCCCATCTCC 58.741 43.478 0.00 0.00 0.00 3.71
424 427 2.251667 GTCGTCGTGAGCGTGTCT 59.748 61.111 0.00 0.00 39.49 3.41
434 437 0.094216 CATACTCGTGTCGTCGTCGT 59.906 55.000 1.33 0.00 38.33 4.34
435 438 0.367887 TCATACTCGTGTCGTCGTCG 59.632 55.000 0.00 0.00 38.55 5.12
436 439 2.164427 GTTCATACTCGTGTCGTCGTC 58.836 52.381 0.00 0.00 0.00 4.20
464 467 0.535102 ACCGCCACTCTGTTTTCCAG 60.535 55.000 0.00 0.00 42.97 3.86
488 491 1.141858 GAATTCAGGTAGGCTCCCAGG 59.858 57.143 0.00 0.00 0.00 4.45
560 566 2.270874 ATCCGTGCTTAGCCCCCTTG 62.271 60.000 0.29 0.00 0.00 3.61
692 702 6.304356 TGATCAGGATGCGTTATTCATTTC 57.696 37.500 0.00 0.00 34.76 2.17
696 706 3.989817 CGATGATCAGGATGCGTTATTCA 59.010 43.478 0.09 0.00 34.76 2.57
697 707 3.181526 GCGATGATCAGGATGCGTTATTC 60.182 47.826 0.09 0.00 34.76 1.75
709 738 2.278792 TGGCGACGCGATGATCAG 60.279 61.111 15.93 0.00 0.00 2.90
720 749 4.203076 AGGGCGTATCGTGGCGAC 62.203 66.667 0.00 0.00 39.18 5.19
760 789 1.301423 TCACCACTAACCAAACGTGC 58.699 50.000 0.00 0.00 0.00 5.34
787 817 0.383949 TTTTCTTTCGCGGCTTGCTT 59.616 45.000 6.13 0.00 43.27 3.91
898 928 2.663196 GGTGAGAAGGTGGTCGGG 59.337 66.667 0.00 0.00 0.00 5.14
900 930 2.432628 GCGGTGAGAAGGTGGTCG 60.433 66.667 0.00 0.00 0.00 4.79
923 953 1.112916 AAGCCAACGGGAAAAGGGTG 61.113 55.000 0.00 0.00 35.59 4.61
941 971 6.699242 TTATATAGAGGACGAGGAGGAGAA 57.301 41.667 0.00 0.00 0.00 2.87
942 972 6.474630 GTTTATATAGAGGACGAGGAGGAGA 58.525 44.000 0.00 0.00 0.00 3.71
943 973 5.352016 CGTTTATATAGAGGACGAGGAGGAG 59.648 48.000 0.00 0.00 35.90 3.69
952 982 4.595762 TGGTGCCGTTTATATAGAGGAC 57.404 45.455 4.89 0.00 0.00 3.85
1019 1062 1.513622 GAAGACGGCTGGAGAGGAC 59.486 63.158 0.00 0.00 0.00 3.85
1203 1352 1.069358 CTAGAATCCAGGAGGCGGAAC 59.931 57.143 0.00 0.00 35.77 3.62
1208 1357 3.778265 AGAGATCTAGAATCCAGGAGGC 58.222 50.000 0.00 0.00 33.74 4.70
1209 1358 6.139679 ACTAGAGATCTAGAATCCAGGAGG 57.860 45.833 20.95 0.00 46.80 4.30
1211 1360 5.855040 AGGACTAGAGATCTAGAATCCAGGA 59.145 44.000 20.95 0.00 46.80 3.86
1241 1390 3.932710 TCAACTGCCGATCACAAATACTC 59.067 43.478 0.00 0.00 0.00 2.59
1349 1504 1.373435 CGACAGTAACCCAGCCCAA 59.627 57.895 0.00 0.00 0.00 4.12
1350 1505 2.589157 CCGACAGTAACCCAGCCCA 61.589 63.158 0.00 0.00 0.00 5.36
1351 1506 1.623542 ATCCGACAGTAACCCAGCCC 61.624 60.000 0.00 0.00 0.00 5.19
1352 1507 0.179081 GATCCGACAGTAACCCAGCC 60.179 60.000 0.00 0.00 0.00 4.85
1353 1508 0.527817 CGATCCGACAGTAACCCAGC 60.528 60.000 0.00 0.00 0.00 4.85
1366 1521 0.179073 ATCTTGGGCAGTTCGATCCG 60.179 55.000 0.00 0.00 0.00 4.18
1422 1577 4.120331 GGTGCCCATGCTCGTTGC 62.120 66.667 0.00 0.00 43.25 4.17
1423 1578 2.048023 ATGGTGCCCATGCTCGTTG 61.048 57.895 5.97 0.00 43.39 4.10
1424 1579 2.356278 ATGGTGCCCATGCTCGTT 59.644 55.556 5.97 0.00 43.39 3.85
1589 1744 6.825610 TGGAAGATGCATGTGTATGTATGTA 58.174 36.000 2.46 0.00 39.34 2.29
1590 1745 5.683681 TGGAAGATGCATGTGTATGTATGT 58.316 37.500 2.46 0.00 39.34 2.29
1591 1746 6.128090 GGATGGAAGATGCATGTGTATGTATG 60.128 42.308 2.46 0.00 39.34 2.39
1592 1747 5.942236 GGATGGAAGATGCATGTGTATGTAT 59.058 40.000 2.46 0.00 41.51 2.29
1612 1770 7.696755 TGTTGAAATACAGAATGAATCGGATG 58.303 34.615 0.00 0.00 39.69 3.51
1679 1843 7.837863 ACATAGGTAAAATTCAACTCTCTCGA 58.162 34.615 0.00 0.00 0.00 4.04
1698 1871 1.401552 CACCATGCGGTTTGACATAGG 59.598 52.381 0.00 0.00 46.31 2.57
1731 1904 8.624776 GTCAAATAAATTGTCTATTCAGGGGAG 58.375 37.037 0.00 0.00 40.11 4.30
1757 1931 7.041167 TCGAGGATGATGGCAAATTATTACTTG 60.041 37.037 0.00 0.00 0.00 3.16
1772 1946 5.579904 AGAATTATGCGATTCGAGGATGATG 59.420 40.000 10.88 0.00 40.22 3.07
1936 2110 4.243793 TGGAGAACAAGTTTCTTTGGGA 57.756 40.909 0.00 0.00 32.32 4.37
1969 2164 2.603075 TCCAAAATTGAGAGGGGTGG 57.397 50.000 0.00 0.00 0.00 4.61
1998 2193 2.223433 GCTGATTACTGTGATTGGCTGC 60.223 50.000 0.00 0.00 0.00 5.25
2019 2214 4.154195 GGTTATGCCAGAGTTAACAGTGTG 59.846 45.833 8.61 0.00 37.17 3.82
2024 2219 5.248477 AGAGAAGGTTATGCCAGAGTTAACA 59.752 40.000 8.61 0.00 40.61 2.41
2082 2305 3.129813 TCAGCATTCTCATTCACATTGGC 59.870 43.478 0.00 0.00 0.00 4.52
2103 2326 1.337260 ACGCACACACCTCTGAATCTC 60.337 52.381 0.00 0.00 0.00 2.75
2114 2337 3.542712 AGAATCATCAAACGCACACAC 57.457 42.857 0.00 0.00 0.00 3.82
2129 2352 4.862018 CAGGAACGACTTCTCTGAAGAATC 59.138 45.833 13.42 2.02 40.68 2.52
2242 2465 2.584608 CCGGTGGCCTTCCAGTAG 59.415 66.667 3.32 0.00 44.48 2.57
2365 2588 1.589196 GAGGCGGTACTCGTGCATC 60.589 63.158 0.00 3.11 41.72 3.91
2508 2731 1.817099 CCGACCTTGCTCATCTGCC 60.817 63.158 0.00 0.00 0.00 4.85
2536 2759 3.986006 TCCGTGGTGACCAGCGAC 61.986 66.667 22.03 4.32 32.34 5.19
2620 2843 3.086600 GGAGAGGGGGAGCTGTGG 61.087 72.222 0.00 0.00 0.00 4.17
2645 2868 2.041405 CACCTCCCCTCCTCCTCC 60.041 72.222 0.00 0.00 0.00 4.30
2646 2869 2.041405 CCACCTCCCCTCCTCCTC 60.041 72.222 0.00 0.00 0.00 3.71
2647 2870 2.876858 ACCACCTCCCCTCCTCCT 60.877 66.667 0.00 0.00 0.00 3.69
2648 2871 2.689034 CACCACCTCCCCTCCTCC 60.689 72.222 0.00 0.00 0.00 4.30
2649 2872 1.990614 GACACCACCTCCCCTCCTC 60.991 68.421 0.00 0.00 0.00 3.71
2650 2873 2.122954 GACACCACCTCCCCTCCT 59.877 66.667 0.00 0.00 0.00 3.69
2762 2985 1.741401 CGAAGAAGGGCATGTGCGA 60.741 57.895 0.00 0.00 43.26 5.10
2773 2996 2.464459 GCCCATGTCGCCGAAGAAG 61.464 63.158 0.00 0.00 0.00 2.85
2781 3004 4.760047 AGACCACGCCCATGTCGC 62.760 66.667 4.76 0.00 34.24 5.19
2837 3060 1.228245 TGGAGAAGGTGCTGTTGGC 60.228 57.895 0.00 0.00 42.22 4.52
2844 3067 2.358737 CGGTGGTGGAGAAGGTGC 60.359 66.667 0.00 0.00 0.00 5.01
2886 3109 3.077229 AGAATTGATCGAGCTCGTGAG 57.923 47.619 33.33 8.05 40.80 3.51
3068 3296 4.002906 TCAGTAGACCACCATGTTGTTC 57.997 45.455 0.00 0.00 0.00 3.18
3200 3428 4.641989 ACATATCATACGGTATACGACCCC 59.358 45.833 0.00 0.00 46.81 4.95
3216 3444 9.281371 AGCAATACTACGTACTCTTACATATCA 57.719 33.333 0.00 0.00 0.00 2.15
3247 3475 3.767066 GACACACACACACACGCGC 62.767 63.158 5.73 0.00 0.00 6.86
3248 3476 1.692148 AAGACACACACACACACGCG 61.692 55.000 3.53 3.53 0.00 6.01
3250 3478 1.075542 ACAAGACACACACACACACG 58.924 50.000 0.00 0.00 0.00 4.49
3269 3497 2.481568 CGTCACTCCGAGTACAACTGTA 59.518 50.000 0.00 0.00 0.00 2.74
3270 3498 1.266175 CGTCACTCCGAGTACAACTGT 59.734 52.381 0.00 0.00 0.00 3.55
3271 3499 1.401148 CCGTCACTCCGAGTACAACTG 60.401 57.143 0.00 0.00 0.00 3.16
3272 3500 0.879765 CCGTCACTCCGAGTACAACT 59.120 55.000 0.00 0.00 0.00 3.16
3273 3501 0.731855 GCCGTCACTCCGAGTACAAC 60.732 60.000 0.00 0.00 0.00 3.32
3274 3502 1.582968 GCCGTCACTCCGAGTACAA 59.417 57.895 0.00 0.00 0.00 2.41
3275 3503 2.338015 GGCCGTCACTCCGAGTACA 61.338 63.158 0.00 0.00 0.00 2.90
3496 3741 9.512588 GGGTCATGAATTGTTAGAATAGATGAT 57.487 33.333 0.00 0.00 0.00 2.45
3498 3743 8.781196 CAGGGTCATGAATTGTTAGAATAGATG 58.219 37.037 0.00 0.00 0.00 2.90
3501 3746 7.770433 TCACAGGGTCATGAATTGTTAGAATAG 59.230 37.037 0.00 0.00 0.00 1.73
3502 3747 7.629157 TCACAGGGTCATGAATTGTTAGAATA 58.371 34.615 0.00 0.00 0.00 1.75
3505 3750 5.497464 TCACAGGGTCATGAATTGTTAGA 57.503 39.130 0.00 0.00 0.00 2.10
3507 3752 5.652014 GGAATCACAGGGTCATGAATTGTTA 59.348 40.000 0.00 0.00 0.00 2.41
3508 3753 4.463891 GGAATCACAGGGTCATGAATTGTT 59.536 41.667 0.00 0.00 0.00 2.83
3510 3755 4.275810 AGGAATCACAGGGTCATGAATTG 58.724 43.478 0.00 0.00 0.00 2.32
3511 3756 4.598036 AGGAATCACAGGGTCATGAATT 57.402 40.909 0.00 0.00 0.00 2.17
3522 4221 4.282195 GGAGGGAGTACATAGGAATCACAG 59.718 50.000 0.00 0.00 0.00 3.66
3550 4249 4.019919 TCCGTTCCGAATTACTAGTTCG 57.980 45.455 0.00 4.40 45.83 3.95
3551 4250 4.357996 CCTCCGTTCCGAATTACTAGTTC 58.642 47.826 0.00 0.00 0.00 3.01
3552 4251 3.131755 CCCTCCGTTCCGAATTACTAGTT 59.868 47.826 0.00 0.00 0.00 2.24
3553 4252 2.692041 CCCTCCGTTCCGAATTACTAGT 59.308 50.000 0.00 0.00 0.00 2.57
3554 4253 2.954318 TCCCTCCGTTCCGAATTACTAG 59.046 50.000 0.00 0.00 0.00 2.57
3555 4254 2.689983 GTCCCTCCGTTCCGAATTACTA 59.310 50.000 0.00 0.00 0.00 1.82
3556 4255 1.479730 GTCCCTCCGTTCCGAATTACT 59.520 52.381 0.00 0.00 0.00 2.24
3557 4256 1.205417 TGTCCCTCCGTTCCGAATTAC 59.795 52.381 0.00 0.00 0.00 1.89
3558 4257 1.559368 TGTCCCTCCGTTCCGAATTA 58.441 50.000 0.00 0.00 0.00 1.40
3559 4258 0.909623 ATGTCCCTCCGTTCCGAATT 59.090 50.000 0.00 0.00 0.00 2.17
3560 4259 0.178068 CATGTCCCTCCGTTCCGAAT 59.822 55.000 0.00 0.00 0.00 3.34
3561 4260 1.189524 ACATGTCCCTCCGTTCCGAA 61.190 55.000 0.00 0.00 0.00 4.30
3562 4261 1.189524 AACATGTCCCTCCGTTCCGA 61.190 55.000 0.00 0.00 0.00 4.55
3563 4262 0.321298 AAACATGTCCCTCCGTTCCG 60.321 55.000 0.00 0.00 0.00 4.30
3564 4263 1.165270 CAAACATGTCCCTCCGTTCC 58.835 55.000 0.00 0.00 0.00 3.62
3565 4264 1.165270 CCAAACATGTCCCTCCGTTC 58.835 55.000 0.00 0.00 0.00 3.95
3566 4265 0.476771 ACCAAACATGTCCCTCCGTT 59.523 50.000 0.00 0.00 0.00 4.44
3567 4266 0.476771 AACCAAACATGTCCCTCCGT 59.523 50.000 0.00 0.00 0.00 4.69
3568 4267 2.356135 CTAACCAAACATGTCCCTCCG 58.644 52.381 0.00 0.00 0.00 4.63
3569 4268 2.620627 CCCTAACCAAACATGTCCCTCC 60.621 54.545 0.00 0.00 0.00 4.30
3570 4269 2.041216 ACCCTAACCAAACATGTCCCTC 59.959 50.000 0.00 0.00 0.00 4.30
3571 4270 2.070573 ACCCTAACCAAACATGTCCCT 58.929 47.619 0.00 0.00 0.00 4.20
3572 4271 2.597578 ACCCTAACCAAACATGTCCC 57.402 50.000 0.00 0.00 0.00 4.46
3598 4297 6.027749 CCTCATTACGTTACCATTTGCTTTC 58.972 40.000 0.00 0.00 0.00 2.62
3601 4300 4.585879 ACCTCATTACGTTACCATTTGCT 58.414 39.130 0.00 0.00 0.00 3.91
3639 4338 1.198408 GTAGCAAAAGCCCCGTTACAC 59.802 52.381 0.00 0.00 0.00 2.90
3649 4353 4.307443 ACCAGACAAAAGTAGCAAAAGC 57.693 40.909 0.00 0.00 0.00 3.51
3666 4370 0.583438 CTGTTGCGTGAGTCAACCAG 59.417 55.000 0.00 0.00 42.97 4.00
3678 4382 2.064762 CTTCTCTCTGTTCCTGTTGCG 58.935 52.381 0.00 0.00 0.00 4.85
3779 4778 8.453320 CCAAAGAAAAAGAGAATGCAAAGTTTT 58.547 29.630 0.00 0.00 0.00 2.43
3780 4779 7.607607 ACCAAAGAAAAAGAGAATGCAAAGTTT 59.392 29.630 0.00 0.00 0.00 2.66
3781 4780 7.064966 CACCAAAGAAAAAGAGAATGCAAAGTT 59.935 33.333 0.00 0.00 0.00 2.66
3782 4781 6.536224 CACCAAAGAAAAAGAGAATGCAAAGT 59.464 34.615 0.00 0.00 0.00 2.66
3957 4961 9.042008 GTTCTGCTTCTAATATATTTTCCACGA 57.958 33.333 2.68 0.00 0.00 4.35
3958 4962 9.046296 AGTTCTGCTTCTAATATATTTTCCACG 57.954 33.333 2.68 0.00 0.00 4.94
3994 4998 9.976511 TCGACGATAATTTAGAGATGGTAAATT 57.023 29.630 0.00 6.19 41.09 1.82
3995 4999 9.976511 TTCGACGATAATTTAGAGATGGTAAAT 57.023 29.630 0.00 0.00 32.55 1.40
3996 5000 9.806203 TTTCGACGATAATTTAGAGATGGTAAA 57.194 29.630 0.00 0.00 0.00 2.01
3997 5001 9.806203 TTTTCGACGATAATTTAGAGATGGTAA 57.194 29.630 0.00 0.00 0.00 2.85
3998 5002 9.976511 ATTTTCGACGATAATTTAGAGATGGTA 57.023 29.630 7.60 0.00 0.00 3.25
3999 5003 8.888579 ATTTTCGACGATAATTTAGAGATGGT 57.111 30.769 7.60 0.00 0.00 3.55
4000 5004 9.586150 CAATTTTCGACGATAATTTAGAGATGG 57.414 33.333 19.42 6.39 0.00 3.51
4018 5022 9.967245 TTGATAAGAAAGTCGTATCAATTTTCG 57.033 29.630 17.22 0.00 45.74 3.46
4026 5030 7.222805 TGCAGTGATTGATAAGAAAGTCGTATC 59.777 37.037 0.00 4.77 38.02 2.24
4035 5039 4.096833 GGCATGTGCAGTGATTGATAAGAA 59.903 41.667 7.36 0.00 44.36 2.52
4039 5043 2.092267 AGGGCATGTGCAGTGATTGATA 60.092 45.455 7.36 0.00 44.36 2.15
4045 5049 0.399833 TGTTAGGGCATGTGCAGTGA 59.600 50.000 7.36 0.00 44.36 3.41
4049 5053 0.178978 TGGTTGTTAGGGCATGTGCA 60.179 50.000 7.36 0.00 44.36 4.57
4051 5055 1.176527 CCTGGTTGTTAGGGCATGTG 58.823 55.000 0.00 0.00 0.00 3.21
4059 5063 0.673644 CACCCGCTCCTGGTTGTTAG 60.674 60.000 0.00 0.00 32.46 2.34
4064 5068 2.185310 GATCACACCCGCTCCTGGTT 62.185 60.000 0.00 0.00 32.46 3.67
4065 5069 2.607750 ATCACACCCGCTCCTGGT 60.608 61.111 0.00 0.00 36.21 4.00
4071 5075 0.179100 CAGAATCGATCACACCCGCT 60.179 55.000 0.00 0.00 0.00 5.52
4076 5080 5.400782 CAGTGCTATACAGAATCGATCACAC 59.599 44.000 0.00 0.00 0.00 3.82
4078 5082 5.524284 ACAGTGCTATACAGAATCGATCAC 58.476 41.667 0.00 0.00 0.00 3.06
4115 5122 1.222936 CGGGCTGGAATCAGAAGCT 59.777 57.895 0.00 0.00 43.49 3.74
4117 5124 0.539051 AGTCGGGCTGGAATCAGAAG 59.461 55.000 0.00 0.00 43.49 2.85
4121 5128 0.911769 ATTGAGTCGGGCTGGAATCA 59.088 50.000 5.42 5.42 39.05 2.57
4132 5139 3.980646 TTGGTTTGGTTGATTGAGTCG 57.019 42.857 0.00 0.00 0.00 4.18
4135 5142 2.794350 GCGTTTGGTTTGGTTGATTGAG 59.206 45.455 0.00 0.00 0.00 3.02
4138 5145 2.482839 CCTGCGTTTGGTTTGGTTGATT 60.483 45.455 0.00 0.00 0.00 2.57
4139 5146 1.068434 CCTGCGTTTGGTTTGGTTGAT 59.932 47.619 0.00 0.00 0.00 2.57
4140 5147 0.457851 CCTGCGTTTGGTTTGGTTGA 59.542 50.000 0.00 0.00 0.00 3.18
4141 5148 0.174617 ACCTGCGTTTGGTTTGGTTG 59.825 50.000 0.00 0.00 33.34 3.77
4142 5149 1.765230 TACCTGCGTTTGGTTTGGTT 58.235 45.000 1.87 0.00 38.88 3.67
4143 5150 1.406180 GTTACCTGCGTTTGGTTTGGT 59.594 47.619 1.87 0.00 38.88 3.67
4144 5151 1.598430 CGTTACCTGCGTTTGGTTTGG 60.598 52.381 1.87 0.00 38.88 3.28
4145 5152 1.598430 CCGTTACCTGCGTTTGGTTTG 60.598 52.381 1.87 0.00 38.88 2.93
4146 5153 0.664224 CCGTTACCTGCGTTTGGTTT 59.336 50.000 1.87 0.00 38.88 3.27
4154 5161 1.135803 CATCCAAAACCGTTACCTGCG 60.136 52.381 0.00 0.00 0.00 5.18
4157 5164 1.541379 GCCATCCAAAACCGTTACCT 58.459 50.000 0.00 0.00 0.00 3.08
4162 5169 2.282180 AGCGCCATCCAAAACCGT 60.282 55.556 2.29 0.00 0.00 4.83
4178 5185 1.737793 GTTTGCCGGACCTGATTACAG 59.262 52.381 5.05 0.00 43.12 2.74
4194 5202 9.725019 ATATATACAGTACCATGGATGTGTTTG 57.275 33.333 21.47 8.90 0.00 2.93
4195 5203 9.725019 CATATATACAGTACCATGGATGTGTTT 57.275 33.333 21.47 14.44 0.00 2.83
4206 5214 9.448438 GAAATTCCATGCATATATACAGTACCA 57.552 33.333 0.00 0.00 0.00 3.25
4207 5215 9.672673 AGAAATTCCATGCATATATACAGTACC 57.327 33.333 0.00 0.00 0.00 3.34
4211 5219 8.047413 TGCAGAAATTCCATGCATATATACAG 57.953 34.615 0.00 0.00 44.56 2.74
4212 5220 7.999450 TGCAGAAATTCCATGCATATATACA 57.001 32.000 0.00 0.00 44.56 2.29
4239 5270 9.777297 ATTCCTTTGCAGTTATTGTAACAATTT 57.223 25.926 0.00 0.00 30.70 1.82
4258 5289 3.251484 TGTCAGGAGTCAGGATTCCTTT 58.749 45.455 10.33 0.00 44.00 3.11
4274 5305 0.467384 ATTCGCATCCTCCCTGTCAG 59.533 55.000 0.00 0.00 0.00 3.51
4275 5306 1.788229 TATTCGCATCCTCCCTGTCA 58.212 50.000 0.00 0.00 0.00 3.58
4304 6702 3.314080 CCGTTTCTGTTTTGCCTTCTACA 59.686 43.478 0.00 0.00 0.00 2.74
4321 6719 0.535102 CACTCTGGTCCAAGCCGTTT 60.535 55.000 0.00 0.00 0.00 3.60
4339 6737 1.746239 CGCCATCAGATGCACACCA 60.746 57.895 4.68 0.00 0.00 4.17
4342 6740 1.746239 CCACGCCATCAGATGCACA 60.746 57.895 4.68 0.00 0.00 4.57
4343 6741 3.104766 CCACGCCATCAGATGCAC 58.895 61.111 4.68 0.00 0.00 4.57
4344 6742 2.825387 GCCACGCCATCAGATGCA 60.825 61.111 4.68 0.00 0.00 3.96
4407 6805 2.822561 CTGGCTCTTTTCTTTTCTCCCC 59.177 50.000 0.00 0.00 0.00 4.81
4410 6808 5.474876 TCATTCCTGGCTCTTTTCTTTTCTC 59.525 40.000 0.00 0.00 0.00 2.87
4430 6828 6.387041 CATATGTGCTTCCTGTCAATCATT 57.613 37.500 0.00 0.00 0.00 2.57
4454 6852 2.111999 TTTCCTCGTCCAGCACAGGG 62.112 60.000 0.00 0.00 0.00 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.