Multiple sequence alignment - TraesCS1A01G179300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G179300 chr1A 100.000 2297 0 0 1 2297 323960240 323962536 0.000000e+00 4242.0
1 TraesCS1A01G179300 chr1A 89.338 272 28 1 598 868 505093948 505094219 7.860000e-90 340.0
2 TraesCS1A01G179300 chr1A 88.346 266 30 1 605 869 449662062 449661797 3.680000e-83 318.0
3 TraesCS1A01G179300 chr1A 85.294 238 35 0 1000 1237 323895148 323895385 1.760000e-61 246.0
4 TraesCS1A01G179300 chr1D 92.289 843 41 3 871 1698 252595982 252596815 0.000000e+00 1175.0
5 TraesCS1A01G179300 chr1D 96.154 312 12 0 287 598 252595673 252595984 5.660000e-141 510.0
6 TraesCS1A01G179300 chr1D 92.647 272 13 3 1 272 252572526 252572790 3.580000e-103 385.0
7 TraesCS1A01G179300 chr1D 81.768 362 55 7 961 1315 252567116 252567473 2.230000e-75 292.0
8 TraesCS1A01G179300 chr1D 80.105 191 34 4 2079 2267 25449640 25449828 3.080000e-29 139.0
9 TraesCS1A01G179300 chr1B 90.985 721 62 3 878 1595 360364648 360363928 0.000000e+00 968.0
10 TraesCS1A01G179300 chr1B 90.894 604 28 8 1 597 360365236 360364653 0.000000e+00 785.0
11 TraesCS1A01G179300 chr1B 88.652 282 27 5 598 875 470484049 470484329 2.830000e-89 339.0
12 TraesCS1A01G179300 chr1B 94.064 219 12 1 2079 2297 342122241 342122024 4.730000e-87 331.0
13 TraesCS1A01G179300 chr1B 83.106 367 54 7 961 1323 360512263 360511901 6.120000e-86 327.0
14 TraesCS1A01G179300 chr1B 87.636 275 33 1 595 868 22207005 22206731 3.680000e-83 318.0
15 TraesCS1A01G179300 chr1B 81.818 187 32 2 2079 2264 505653540 505653355 3.060000e-34 156.0
16 TraesCS1A01G179300 chr3D 88.889 279 30 1 596 873 193949496 193949218 2.190000e-90 342.0
17 TraesCS1A01G179300 chr4A 94.595 222 9 1 2079 2297 6019855 6020076 7.860000e-90 340.0
18 TraesCS1A01G179300 chr4A 94.624 93 5 0 1987 2079 605067249 605067157 6.610000e-31 145.0
19 TraesCS1A01G179300 chr7D 89.051 274 28 2 601 872 403145035 403144762 2.830000e-89 339.0
20 TraesCS1A01G179300 chr7B 89.051 274 28 2 601 872 139049742 139049469 2.830000e-89 339.0
21 TraesCS1A01G179300 chr7B 88.256 281 30 3 595 873 563728419 563728140 1.320000e-87 333.0
22 TraesCS1A01G179300 chr7B 83.500 200 21 7 2080 2268 19118238 19118436 2.350000e-40 176.0
23 TraesCS1A01G179300 chr5B 94.064 219 12 1 2080 2297 692367630 692367412 4.730000e-87 331.0
24 TraesCS1A01G179300 chr2B 88.889 270 29 1 601 869 406719348 406719617 4.730000e-87 331.0
25 TraesCS1A01G179300 chr5A 93.088 217 15 0 2079 2295 612160013 612160229 3.680000e-83 318.0
26 TraesCS1A01G179300 chr5A 92.237 219 15 2 2079 2297 612159788 612160004 2.220000e-80 309.0
27 TraesCS1A01G179300 chr5A 91.705 217 18 0 2079 2295 612160410 612160626 3.710000e-78 302.0
28 TraesCS1A01G179300 chr3A 92.473 93 7 0 1987 2079 733318337 733318429 1.430000e-27 134.0
29 TraesCS1A01G179300 chr7A 100.000 30 0 0 1987 2016 638843545 638843574 3.190000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G179300 chr1A 323960240 323962536 2296 False 4242.000000 4242 100.000000 1 2297 1 chr1A.!!$F2 2296
1 TraesCS1A01G179300 chr1D 252595673 252596815 1142 False 842.500000 1175 94.221500 287 1698 2 chr1D.!!$F4 1411
2 TraesCS1A01G179300 chr1B 360363928 360365236 1308 True 876.500000 968 90.939500 1 1595 2 chr1B.!!$R5 1594
3 TraesCS1A01G179300 chr5A 612159788 612160626 838 False 309.666667 318 92.343333 2079 2297 3 chr5A.!!$F1 218

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
316 317 0.62003 AGTATCACATGGGTGCAGCA 59.38 50.0 19.06 4.31 44.87 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1945 1971 0.036858 GAGTCTTCGCTCTTGGGCTT 60.037 55.0 0.0 0.0 32.99 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 0.672342 ACTAGCAACGTCGGTCACTT 59.328 50.000 0.00 0.00 0.00 3.16
25 26 0.669619 TAGCAACGTCGGTCACTTCA 59.330 50.000 0.00 0.00 0.00 3.02
57 58 2.570582 GAAGGCCGAGCTCACTCCTG 62.571 65.000 15.40 0.00 40.03 3.86
235 236 2.261671 CTCGAACCACCACCTCCG 59.738 66.667 0.00 0.00 0.00 4.63
236 237 3.934391 CTCGAACCACCACCTCCGC 62.934 68.421 0.00 0.00 0.00 5.54
238 239 3.637273 GAACCACCACCTCCGCCT 61.637 66.667 0.00 0.00 0.00 5.52
239 240 3.607370 GAACCACCACCTCCGCCTC 62.607 68.421 0.00 0.00 0.00 4.70
256 257 4.394712 CCGCCACCACCACTCTCC 62.395 72.222 0.00 0.00 0.00 3.71
259 260 3.706373 CCACCACCACTCTCCCCG 61.706 72.222 0.00 0.00 0.00 5.73
263 264 4.436998 CACCACTCTCCCCGTCGC 62.437 72.222 0.00 0.00 0.00 5.19
305 306 8.847196 ACGATCTTAATTAGCAGTAGTATCACA 58.153 33.333 0.00 0.00 0.00 3.58
309 310 8.367911 TCTTAATTAGCAGTAGTATCACATGGG 58.632 37.037 0.00 0.00 0.00 4.00
312 313 2.158900 AGCAGTAGTATCACATGGGTGC 60.159 50.000 0.00 0.00 44.87 5.01
316 317 0.620030 AGTATCACATGGGTGCAGCA 59.380 50.000 19.06 4.31 44.87 4.41
420 428 7.697710 TCAGCAATGTGACGATATGAATTTTTC 59.302 33.333 0.00 0.00 0.00 2.29
505 513 8.180267 CCATGTGAATTCTTTGACACTTATCTC 58.820 37.037 7.05 0.00 31.59 2.75
510 518 8.037758 TGAATTCTTTGACACTTATCTCTCTCC 58.962 37.037 7.05 0.00 0.00 3.71
598 606 2.095567 GCCATGTGCGCCATCTAATAAG 60.096 50.000 4.18 0.00 0.00 1.73
600 608 3.187227 CCATGTGCGCCATCTAATAAGAC 59.813 47.826 4.18 0.00 33.57 3.01
601 609 3.819564 TGTGCGCCATCTAATAAGACT 57.180 42.857 4.18 0.00 33.57 3.24
602 610 3.457234 TGTGCGCCATCTAATAAGACTG 58.543 45.455 4.18 0.00 33.57 3.51
603 611 3.132111 TGTGCGCCATCTAATAAGACTGA 59.868 43.478 4.18 0.00 33.57 3.41
604 612 4.202253 TGTGCGCCATCTAATAAGACTGAT 60.202 41.667 4.18 0.00 33.57 2.90
605 613 4.387256 GTGCGCCATCTAATAAGACTGATC 59.613 45.833 4.18 0.00 33.57 2.92
606 614 3.610242 GCGCCATCTAATAAGACTGATCG 59.390 47.826 0.00 0.00 33.57 3.69
607 615 4.799678 CGCCATCTAATAAGACTGATCGT 58.200 43.478 0.00 0.00 33.57 3.73
608 616 5.619309 GCGCCATCTAATAAGACTGATCGTA 60.619 44.000 0.00 0.00 33.57 3.43
609 617 6.379386 CGCCATCTAATAAGACTGATCGTAA 58.621 40.000 0.00 0.00 33.57 3.18
610 618 6.305877 CGCCATCTAATAAGACTGATCGTAAC 59.694 42.308 0.00 0.00 33.57 2.50
611 619 6.305877 GCCATCTAATAAGACTGATCGTAACG 59.694 42.308 0.00 0.00 33.57 3.18
612 620 7.582352 CCATCTAATAAGACTGATCGTAACGA 58.418 38.462 0.00 0.00 35.75 3.85
613 621 7.746916 CCATCTAATAAGACTGATCGTAACGAG 59.253 40.741 0.00 0.00 35.08 4.18
614 622 8.496751 CATCTAATAAGACTGATCGTAACGAGA 58.503 37.037 0.00 0.00 35.08 4.04
615 623 8.074474 TCTAATAAGACTGATCGTAACGAGAG 57.926 38.462 0.00 0.00 39.91 3.20
632 640 6.872628 ACGAGAGTATCATAAACGGTATCA 57.127 37.500 0.00 0.00 46.88 2.15
633 641 7.450124 ACGAGAGTATCATAAACGGTATCAT 57.550 36.000 0.00 0.00 46.88 2.45
634 642 7.306213 ACGAGAGTATCATAAACGGTATCATG 58.694 38.462 0.00 0.00 46.88 3.07
635 643 6.251589 CGAGAGTATCATAAACGGTATCATGC 59.748 42.308 0.00 0.00 37.82 4.06
636 644 6.993079 AGAGTATCATAAACGGTATCATGCA 58.007 36.000 0.00 0.00 37.82 3.96
637 645 7.615403 AGAGTATCATAAACGGTATCATGCAT 58.385 34.615 0.00 0.00 37.82 3.96
638 646 7.761704 AGAGTATCATAAACGGTATCATGCATC 59.238 37.037 0.00 0.00 37.82 3.91
639 647 6.818644 AGTATCATAAACGGTATCATGCATCC 59.181 38.462 0.00 0.00 0.00 3.51
640 648 5.227569 TCATAAACGGTATCATGCATCCT 57.772 39.130 0.00 0.00 0.00 3.24
641 649 6.353404 TCATAAACGGTATCATGCATCCTA 57.647 37.500 0.00 0.00 0.00 2.94
642 650 6.764379 TCATAAACGGTATCATGCATCCTAA 58.236 36.000 0.00 0.00 0.00 2.69
643 651 6.649141 TCATAAACGGTATCATGCATCCTAAC 59.351 38.462 0.00 0.00 0.00 2.34
644 652 4.689612 AACGGTATCATGCATCCTAACT 57.310 40.909 0.00 0.00 0.00 2.24
645 653 5.801531 AACGGTATCATGCATCCTAACTA 57.198 39.130 0.00 0.00 0.00 2.24
646 654 5.392767 ACGGTATCATGCATCCTAACTAG 57.607 43.478 0.00 0.00 0.00 2.57
647 655 5.077564 ACGGTATCATGCATCCTAACTAGA 58.922 41.667 0.00 0.00 0.00 2.43
648 656 5.717178 ACGGTATCATGCATCCTAACTAGAT 59.283 40.000 0.00 0.00 0.00 1.98
649 657 6.211584 ACGGTATCATGCATCCTAACTAGATT 59.788 38.462 0.00 0.00 0.00 2.40
650 658 7.099764 CGGTATCATGCATCCTAACTAGATTT 58.900 38.462 0.00 0.00 0.00 2.17
651 659 7.604164 CGGTATCATGCATCCTAACTAGATTTT 59.396 37.037 0.00 0.00 0.00 1.82
652 660 9.289782 GGTATCATGCATCCTAACTAGATTTTT 57.710 33.333 0.00 0.00 0.00 1.94
686 694 9.513906 TGTGACATACAATTAAATGAGGAAAGA 57.486 29.630 0.00 0.00 36.06 2.52
694 702 9.136323 ACAATTAAATGAGGAAAGAAAGAGTGT 57.864 29.630 0.00 0.00 0.00 3.55
700 708 9.660180 AAATGAGGAAAGAAAGAGTGTAGTATC 57.340 33.333 0.00 0.00 0.00 2.24
701 709 7.776618 TGAGGAAAGAAAGAGTGTAGTATCA 57.223 36.000 0.00 0.00 0.00 2.15
702 710 8.367660 TGAGGAAAGAAAGAGTGTAGTATCAT 57.632 34.615 0.00 0.00 0.00 2.45
703 711 9.475620 TGAGGAAAGAAAGAGTGTAGTATCATA 57.524 33.333 0.00 0.00 0.00 2.15
754 762 9.787532 ATTGTATTACTTTGTGTCATGCATAAC 57.212 29.630 0.00 0.00 28.04 1.89
755 763 8.329203 TGTATTACTTTGTGTCATGCATAACA 57.671 30.769 0.00 0.00 0.00 2.41
756 764 8.787852 TGTATTACTTTGTGTCATGCATAACAA 58.212 29.630 3.65 10.55 0.00 2.83
757 765 9.787532 GTATTACTTTGTGTCATGCATAACAAT 57.212 29.630 3.65 2.96 32.90 2.71
868 876 8.823220 ATATAATATTCCCCATTACAACCAGC 57.177 34.615 0.00 0.00 0.00 4.85
869 877 4.814224 ATATTCCCCATTACAACCAGCT 57.186 40.909 0.00 0.00 0.00 4.24
870 878 2.990740 TTCCCCATTACAACCAGCTT 57.009 45.000 0.00 0.00 0.00 3.74
871 879 4.601406 ATTCCCCATTACAACCAGCTTA 57.399 40.909 0.00 0.00 0.00 3.09
872 880 4.390129 TTCCCCATTACAACCAGCTTAA 57.610 40.909 0.00 0.00 0.00 1.85
913 921 8.741841 CCAAGATTTCCCAAATAAATGCAAATT 58.258 29.630 0.00 0.00 0.00 1.82
926 934 0.958822 GCAAATTCGTCAACCACCCT 59.041 50.000 0.00 0.00 0.00 4.34
1210 1221 1.078426 GGTAGAGTGCGGCCATTGT 60.078 57.895 2.24 0.00 0.00 2.71
1386 1397 4.812091 TCTGTGTAACGCTTGTGTAAACAT 59.188 37.500 0.00 0.00 42.39 2.71
1425 1436 6.913170 TGCTGAGATTCATGTTTTACCTTTC 58.087 36.000 0.00 0.00 0.00 2.62
1469 1480 9.170890 ACTCCCTCCATTCATTGTTATAAGATA 57.829 33.333 0.00 0.00 0.00 1.98
1648 1674 9.148104 GTTTAGAAAAATGTCTACGTCTGGTAT 57.852 33.333 0.00 0.00 29.70 2.73
1651 1677 4.737855 AAATGTCTACGTCTGGTATGCT 57.262 40.909 0.00 0.00 0.00 3.79
1666 1692 4.142534 TGGTATGCTTACGACAGTAGACAC 60.143 45.833 3.88 0.00 33.87 3.67
1667 1693 3.505464 ATGCTTACGACAGTAGACACC 57.495 47.619 0.00 0.00 33.87 4.16
1668 1694 2.511659 TGCTTACGACAGTAGACACCT 58.488 47.619 0.00 0.00 33.87 4.00
1669 1695 2.228103 TGCTTACGACAGTAGACACCTG 59.772 50.000 0.00 0.00 33.87 4.00
1670 1696 2.228343 GCTTACGACAGTAGACACCTGT 59.772 50.000 0.00 0.00 45.52 4.00
1671 1697 3.822996 CTTACGACAGTAGACACCTGTG 58.177 50.000 0.00 0.00 43.00 3.66
1673 1699 2.029623 ACGACAGTAGACACCTGTGTT 58.970 47.619 4.16 0.00 45.05 3.32
1674 1700 2.429610 ACGACAGTAGACACCTGTGTTT 59.570 45.455 4.16 1.41 45.05 2.83
1675 1701 3.050619 CGACAGTAGACACCTGTGTTTC 58.949 50.000 4.16 0.00 45.05 2.78
1676 1702 3.243434 CGACAGTAGACACCTGTGTTTCT 60.243 47.826 4.16 0.96 45.05 2.52
1677 1703 4.051922 GACAGTAGACACCTGTGTTTCTG 58.948 47.826 19.01 19.01 45.05 3.02
1678 1704 3.704566 ACAGTAGACACCTGTGTTTCTGA 59.295 43.478 23.45 0.00 45.05 3.27
1679 1705 4.161565 ACAGTAGACACCTGTGTTTCTGAA 59.838 41.667 23.45 0.00 45.05 3.02
1680 1706 5.116180 CAGTAGACACCTGTGTTTCTGAAA 58.884 41.667 17.28 0.00 45.05 2.69
1681 1707 5.760253 CAGTAGACACCTGTGTTTCTGAAAT 59.240 40.000 17.28 0.00 45.05 2.17
1682 1708 6.260936 CAGTAGACACCTGTGTTTCTGAAATT 59.739 38.462 17.28 0.00 45.05 1.82
1683 1709 6.828785 AGTAGACACCTGTGTTTCTGAAATTT 59.171 34.615 6.06 0.00 45.05 1.82
1684 1710 5.894807 AGACACCTGTGTTTCTGAAATTTG 58.105 37.500 6.06 1.21 45.05 2.32
1685 1711 5.652014 AGACACCTGTGTTTCTGAAATTTGA 59.348 36.000 6.06 0.00 45.05 2.69
1686 1712 5.650543 ACACCTGTGTTTCTGAAATTTGAC 58.349 37.500 6.06 2.59 41.83 3.18
1687 1713 5.418840 ACACCTGTGTTTCTGAAATTTGACT 59.581 36.000 6.06 0.00 41.83 3.41
1688 1714 6.071391 ACACCTGTGTTTCTGAAATTTGACTT 60.071 34.615 6.06 0.00 41.83 3.01
1689 1715 7.122055 ACACCTGTGTTTCTGAAATTTGACTTA 59.878 33.333 6.06 0.00 41.83 2.24
1690 1716 7.973388 CACCTGTGTTTCTGAAATTTGACTTAA 59.027 33.333 6.06 0.00 0.00 1.85
1691 1717 7.973944 ACCTGTGTTTCTGAAATTTGACTTAAC 59.026 33.333 6.06 0.00 0.00 2.01
1692 1718 7.973388 CCTGTGTTTCTGAAATTTGACTTAACA 59.027 33.333 6.06 0.00 0.00 2.41
1693 1719 8.682128 TGTGTTTCTGAAATTTGACTTAACAC 57.318 30.769 17.37 17.37 41.72 3.32
1694 1720 8.300286 TGTGTTTCTGAAATTTGACTTAACACA 58.700 29.630 20.27 20.27 45.91 3.72
1695 1721 9.301153 GTGTTTCTGAAATTTGACTTAACACAT 57.699 29.630 18.37 0.00 41.27 3.21
1696 1722 9.299963 TGTTTCTGAAATTTGACTTAACACATG 57.700 29.630 6.06 0.00 0.00 3.21
1697 1723 9.515020 GTTTCTGAAATTTGACTTAACACATGA 57.485 29.630 6.06 0.00 0.00 3.07
1698 1724 9.515020 TTTCTGAAATTTGACTTAACACATGAC 57.485 29.630 0.00 0.00 0.00 3.06
1699 1725 7.351981 TCTGAAATTTGACTTAACACATGACG 58.648 34.615 0.00 0.00 0.00 4.35
1700 1726 7.011950 TCTGAAATTTGACTTAACACATGACGT 59.988 33.333 0.00 0.00 0.00 4.34
1713 1739 5.236103 CACATGACGTGCATTGTTTTTAC 57.764 39.130 0.00 0.00 39.19 2.01
1714 1740 3.971871 ACATGACGTGCATTGTTTTTACG 59.028 39.130 0.00 0.00 40.30 3.18
1715 1741 3.946308 TGACGTGCATTGTTTTTACGA 57.054 38.095 0.00 0.00 38.08 3.43
1716 1742 3.609475 TGACGTGCATTGTTTTTACGAC 58.391 40.909 0.00 0.00 38.08 4.34
1717 1743 3.063588 TGACGTGCATTGTTTTTACGACA 59.936 39.130 0.00 0.00 37.17 4.35
1718 1744 3.613563 ACGTGCATTGTTTTTACGACAG 58.386 40.909 0.00 0.00 38.08 3.51
1719 1745 3.064271 ACGTGCATTGTTTTTACGACAGT 59.936 39.130 0.00 0.00 38.08 3.55
1720 1746 4.270566 ACGTGCATTGTTTTTACGACAGTA 59.729 37.500 0.00 0.00 38.08 2.74
1721 1747 4.838642 CGTGCATTGTTTTTACGACAGTAG 59.161 41.667 0.00 0.00 36.94 2.57
1722 1748 5.332732 CGTGCATTGTTTTTACGACAGTAGA 60.333 40.000 0.00 0.00 36.94 2.59
1723 1749 5.844396 GTGCATTGTTTTTACGACAGTAGAC 59.156 40.000 0.00 0.00 33.87 2.59
1724 1750 5.070862 GCATTGTTTTTACGACAGTAGACG 58.929 41.667 0.00 0.00 38.82 4.18
1725 1751 5.605327 CATTGTTTTTACGACAGTAGACGG 58.395 41.667 0.00 0.00 37.24 4.79
1726 1752 4.305989 TGTTTTTACGACAGTAGACGGT 57.694 40.909 0.00 0.00 37.24 4.83
1727 1753 5.431420 TGTTTTTACGACAGTAGACGGTA 57.569 39.130 0.00 0.00 37.24 4.02
1728 1754 5.212194 TGTTTTTACGACAGTAGACGGTAC 58.788 41.667 0.00 0.00 37.24 3.34
1729 1755 3.722555 TTTACGACAGTAGACGGTACG 57.277 47.619 0.00 0.00 46.43 3.67
1730 1756 1.393539 TTACGACAGTAGACGGTACGC 59.606 52.381 0.00 0.00 45.46 4.42
1731 1757 3.184786 TTACGACAGTAGACGGTACGCA 61.185 50.000 0.00 0.00 45.46 5.24
1732 1758 5.241749 TTACGACAGTAGACGGTACGCAC 62.242 52.174 0.00 0.00 45.46 5.34
1764 1790 3.495377 CCGTGTGTCCGAAATTTGACTTA 59.505 43.478 0.00 0.00 32.67 2.24
1773 1799 7.040755 TGTCCGAAATTTGACTTAACACATGAT 60.041 33.333 0.00 0.00 32.67 2.45
1774 1800 7.271223 GTCCGAAATTTGACTTAACACATGATG 59.729 37.037 0.00 0.00 0.00 3.07
1775 1801 7.040755 TCCGAAATTTGACTTAACACATGATGT 60.041 33.333 0.00 0.00 46.42 3.06
1789 1815 4.789629 CACATGATGTGCATTGTTTCTACG 59.210 41.667 13.15 0.00 41.89 3.51
1790 1816 4.694982 ACATGATGTGCATTGTTTCTACGA 59.305 37.500 0.00 0.00 34.15 3.43
1791 1817 5.355071 ACATGATGTGCATTGTTTCTACGAT 59.645 36.000 0.00 0.00 34.15 3.73
1792 1818 6.538381 ACATGATGTGCATTGTTTCTACGATA 59.462 34.615 0.00 0.00 34.15 2.92
1793 1819 6.588348 TGATGTGCATTGTTTCTACGATAG 57.412 37.500 0.00 0.00 46.19 2.08
1794 1820 6.763135 ATGATGTGCATTGTTTCTACGATAGT 59.237 34.615 0.00 0.00 44.33 2.12
1795 1821 7.926018 ATGATGTGCATTGTTTCTACGATAGTA 59.074 33.333 0.00 0.00 40.95 1.82
1811 1837 6.258455 CGATAGTAGACACTCGTATATCCG 57.742 45.833 0.00 0.00 36.14 4.18
1812 1838 6.032717 CGATAGTAGACACTCGTATATCCGA 58.967 44.000 0.00 0.00 36.14 4.55
1813 1839 6.529477 CGATAGTAGACACTCGTATATCCGAA 59.471 42.308 0.00 0.00 36.24 4.30
1814 1840 7.062722 CGATAGTAGACACTCGTATATCCGAAA 59.937 40.741 0.00 0.00 36.24 3.46
1815 1841 8.789825 ATAGTAGACACTCGTATATCCGAAAT 57.210 34.615 0.00 0.00 36.24 2.17
1816 1842 7.507733 AGTAGACACTCGTATATCCGAAATT 57.492 36.000 0.00 0.00 36.24 1.82
1817 1843 7.938715 AGTAGACACTCGTATATCCGAAATTT 58.061 34.615 0.00 0.00 36.24 1.82
1818 1844 7.861372 AGTAGACACTCGTATATCCGAAATTTG 59.139 37.037 0.00 0.00 36.24 2.32
1819 1845 6.802608 AGACACTCGTATATCCGAAATTTGA 58.197 36.000 0.00 0.00 36.24 2.69
1820 1846 6.696148 AGACACTCGTATATCCGAAATTTGAC 59.304 38.462 0.00 0.00 36.24 3.18
1821 1847 6.570692 ACACTCGTATATCCGAAATTTGACT 58.429 36.000 0.00 0.00 36.24 3.41
1822 1848 7.039882 ACACTCGTATATCCGAAATTTGACTT 58.960 34.615 0.00 0.00 36.24 3.01
1823 1849 8.192774 ACACTCGTATATCCGAAATTTGACTTA 58.807 33.333 0.00 0.00 36.24 2.24
1824 1850 9.027129 CACTCGTATATCCGAAATTTGACTTAA 57.973 33.333 0.00 0.00 36.24 1.85
1825 1851 9.028185 ACTCGTATATCCGAAATTTGACTTAAC 57.972 33.333 0.00 0.00 36.24 2.01
1826 1852 8.929827 TCGTATATCCGAAATTTGACTTAACA 57.070 30.769 0.00 0.00 33.15 2.41
1827 1853 8.810427 TCGTATATCCGAAATTTGACTTAACAC 58.190 33.333 0.00 0.00 33.15 3.32
1828 1854 8.597227 CGTATATCCGAAATTTGACTTAACACA 58.403 33.333 0.00 0.00 0.00 3.72
1831 1857 6.869315 TCCGAAATTTGACTTAACACATGA 57.131 33.333 0.00 0.00 0.00 3.07
1832 1858 6.664515 TCCGAAATTTGACTTAACACATGAC 58.335 36.000 0.00 0.00 0.00 3.06
1833 1859 6.485313 TCCGAAATTTGACTTAACACATGACT 59.515 34.615 0.00 0.00 0.00 3.41
1834 1860 7.012894 TCCGAAATTTGACTTAACACATGACTT 59.987 33.333 0.00 0.00 0.00 3.01
1835 1861 8.286800 CCGAAATTTGACTTAACACATGACTTA 58.713 33.333 0.00 0.00 0.00 2.24
1836 1862 9.658475 CGAAATTTGACTTAACACATGACTTAA 57.342 29.630 0.00 0.00 0.00 1.85
1839 1865 9.730420 AATTTGACTTAACACATGACTTAACAC 57.270 29.630 0.00 0.00 0.00 3.32
1840 1866 7.851387 TTGACTTAACACATGACTTAACACA 57.149 32.000 0.00 0.00 0.00 3.72
1841 1867 8.445275 TTGACTTAACACATGACTTAACACAT 57.555 30.769 0.00 0.00 0.00 3.21
1842 1868 7.860613 TGACTTAACACATGACTTAACACATG 58.139 34.615 0.00 12.66 46.11 3.21
1843 1869 7.713073 TGACTTAACACATGACTTAACACATGA 59.287 33.333 18.17 0.62 44.28 3.07
1844 1870 8.621532 ACTTAACACATGACTTAACACATGAT 57.378 30.769 18.17 9.89 44.28 2.45
1845 1871 9.719355 ACTTAACACATGACTTAACACATGATA 57.281 29.630 18.17 9.25 44.28 2.15
1847 1873 9.936759 TTAACACATGACTTAACACATGATAGA 57.063 29.630 18.17 4.51 44.28 1.98
1849 1875 9.453572 AACACATGACTTAACACATGATAGATT 57.546 29.630 18.17 6.96 44.28 2.40
1850 1876 8.886719 ACACATGACTTAACACATGATAGATTG 58.113 33.333 18.17 10.47 44.28 2.67
1851 1877 8.886719 CACATGACTTAACACATGATAGATTGT 58.113 33.333 18.17 0.00 44.28 2.71
1871 1897 8.967218 AGATTGTAATTGAATGTTTTTCACGTG 58.033 29.630 9.94 9.94 0.00 4.49
1872 1898 6.503616 TGTAATTGAATGTTTTTCACGTGC 57.496 33.333 11.67 0.00 0.00 5.34
1873 1899 6.036470 TGTAATTGAATGTTTTTCACGTGCA 58.964 32.000 11.67 2.55 0.00 4.57
1874 1900 6.531594 TGTAATTGAATGTTTTTCACGTGCAA 59.468 30.769 11.67 2.81 43.18 4.08
1875 1901 5.640218 ATTGAATGTTTTTCACGTGCAAG 57.360 34.783 11.67 0.00 42.41 4.01
1876 1902 3.443037 TGAATGTTTTTCACGTGCAAGG 58.557 40.909 11.67 0.00 25.06 3.61
1877 1903 3.129462 TGAATGTTTTTCACGTGCAAGGA 59.871 39.130 11.67 0.00 25.06 3.36
1878 1904 2.553079 TGTTTTTCACGTGCAAGGAC 57.447 45.000 11.67 9.79 0.00 3.85
1879 1905 2.088423 TGTTTTTCACGTGCAAGGACT 58.912 42.857 11.67 0.00 0.00 3.85
1880 1906 3.271729 TGTTTTTCACGTGCAAGGACTA 58.728 40.909 11.67 0.00 0.00 2.59
1881 1907 3.690139 TGTTTTTCACGTGCAAGGACTAA 59.310 39.130 11.67 0.00 0.00 2.24
1882 1908 4.156190 TGTTTTTCACGTGCAAGGACTAAA 59.844 37.500 11.67 0.29 0.00 1.85
1883 1909 5.163602 TGTTTTTCACGTGCAAGGACTAAAT 60.164 36.000 11.67 0.00 0.00 1.40
1884 1910 5.508200 TTTTCACGTGCAAGGACTAAATT 57.492 34.783 11.67 0.00 0.00 1.82
1885 1911 5.508200 TTTCACGTGCAAGGACTAAATTT 57.492 34.783 11.67 0.00 0.00 1.82
1886 1912 6.621316 TTTCACGTGCAAGGACTAAATTTA 57.379 33.333 11.67 0.00 0.00 1.40
1887 1913 6.621316 TTCACGTGCAAGGACTAAATTTAA 57.379 33.333 11.67 0.00 0.00 1.52
1888 1914 6.236017 TCACGTGCAAGGACTAAATTTAAG 57.764 37.500 11.67 0.00 0.00 1.85
1889 1915 5.992829 TCACGTGCAAGGACTAAATTTAAGA 59.007 36.000 11.67 0.00 0.00 2.10
1890 1916 6.653320 TCACGTGCAAGGACTAAATTTAAGAT 59.347 34.615 11.67 0.00 0.00 2.40
1891 1917 7.820386 TCACGTGCAAGGACTAAATTTAAGATA 59.180 33.333 11.67 0.00 0.00 1.98
1892 1918 8.447833 CACGTGCAAGGACTAAATTTAAGATAA 58.552 33.333 0.82 0.00 0.00 1.75
1893 1919 9.005777 ACGTGCAAGGACTAAATTTAAGATAAA 57.994 29.630 4.26 0.00 0.00 1.40
1894 1920 9.834628 CGTGCAAGGACTAAATTTAAGATAAAA 57.165 29.630 0.00 0.00 0.00 1.52
1919 1945 9.624373 AAACTCATTTGCAGATCTAATCTATGT 57.376 29.630 0.00 0.00 37.58 2.29
1921 1947 9.926158 ACTCATTTGCAGATCTAATCTATGTAG 57.074 33.333 0.00 0.21 37.58 2.74
1922 1948 9.926158 CTCATTTGCAGATCTAATCTATGTAGT 57.074 33.333 0.00 0.00 37.58 2.73
1928 1954 9.451002 TGCAGATCTAATCTATGTAGTACTACC 57.549 37.037 26.41 11.84 37.58 3.18
1929 1955 9.675464 GCAGATCTAATCTATGTAGTACTACCT 57.325 37.037 26.41 20.26 37.58 3.08
1934 1960 9.703892 TCTAATCTATGTAGTACTACCTTCGTC 57.296 37.037 26.41 4.27 35.26 4.20
1935 1961 9.709495 CTAATCTATGTAGTACTACCTTCGTCT 57.291 37.037 26.41 10.86 35.26 4.18
1936 1962 7.966246 ATCTATGTAGTACTACCTTCGTCTG 57.034 40.000 26.41 10.60 35.26 3.51
1937 1963 6.286758 TCTATGTAGTACTACCTTCGTCTGG 58.713 44.000 26.41 9.29 35.26 3.86
1938 1964 3.614092 TGTAGTACTACCTTCGTCTGGG 58.386 50.000 26.41 0.00 35.26 4.45
1939 1965 2.895242 AGTACTACCTTCGTCTGGGT 57.105 50.000 0.00 0.00 39.40 4.51
1940 1966 3.166560 AGTACTACCTTCGTCTGGGTT 57.833 47.619 0.00 0.00 37.07 4.11
1941 1967 3.504375 AGTACTACCTTCGTCTGGGTTT 58.496 45.455 0.00 0.00 37.07 3.27
1942 1968 4.666512 AGTACTACCTTCGTCTGGGTTTA 58.333 43.478 0.00 0.00 37.07 2.01
1943 1969 5.079643 AGTACTACCTTCGTCTGGGTTTAA 58.920 41.667 0.00 0.00 37.07 1.52
1944 1970 4.961438 ACTACCTTCGTCTGGGTTTAAA 57.039 40.909 0.00 0.00 37.07 1.52
1945 1971 5.294734 ACTACCTTCGTCTGGGTTTAAAA 57.705 39.130 0.00 0.00 37.07 1.52
1946 1972 5.683681 ACTACCTTCGTCTGGGTTTAAAAA 58.316 37.500 0.00 0.00 37.07 1.94
1947 1973 5.761726 ACTACCTTCGTCTGGGTTTAAAAAG 59.238 40.000 0.00 0.00 37.07 2.27
1948 1974 3.317149 ACCTTCGTCTGGGTTTAAAAAGC 59.683 43.478 0.00 0.00 35.75 3.51
1957 1983 2.672714 GGTTTAAAAAGCCCAAGAGCG 58.327 47.619 0.00 0.00 38.01 5.03
1958 1984 2.295070 GGTTTAAAAAGCCCAAGAGCGA 59.705 45.455 0.00 0.00 38.01 4.93
1959 1985 3.243602 GGTTTAAAAAGCCCAAGAGCGAA 60.244 43.478 0.00 0.00 38.01 4.70
1960 1986 3.915437 TTAAAAAGCCCAAGAGCGAAG 57.085 42.857 0.00 0.00 38.01 3.79
1961 1987 1.981256 AAAAAGCCCAAGAGCGAAGA 58.019 45.000 0.00 0.00 38.01 2.87
1962 1988 1.239347 AAAAGCCCAAGAGCGAAGAC 58.761 50.000 0.00 0.00 38.01 3.01
1963 1989 0.398318 AAAGCCCAAGAGCGAAGACT 59.602 50.000 0.00 0.00 38.01 3.24
1964 1990 0.036858 AAGCCCAAGAGCGAAGACTC 60.037 55.000 0.00 0.00 38.01 3.36
1966 1992 0.818296 GCCCAAGAGCGAAGACTCTA 59.182 55.000 0.00 0.00 46.38 2.43
1967 1993 1.204941 GCCCAAGAGCGAAGACTCTAA 59.795 52.381 0.00 0.00 46.38 2.10
1968 1994 2.159028 GCCCAAGAGCGAAGACTCTAAT 60.159 50.000 0.00 0.00 46.38 1.73
1969 1995 3.068307 GCCCAAGAGCGAAGACTCTAATA 59.932 47.826 0.00 0.00 46.38 0.98
1970 1996 4.612943 CCCAAGAGCGAAGACTCTAATAC 58.387 47.826 0.00 0.00 46.38 1.89
1971 1997 4.500035 CCCAAGAGCGAAGACTCTAATACC 60.500 50.000 0.00 0.00 46.38 2.73
1972 1998 4.098044 CCAAGAGCGAAGACTCTAATACCA 59.902 45.833 0.00 0.00 46.38 3.25
1973 1999 5.394224 CCAAGAGCGAAGACTCTAATACCAA 60.394 44.000 0.00 0.00 46.38 3.67
1974 2000 5.508200 AGAGCGAAGACTCTAATACCAAG 57.492 43.478 0.00 0.00 45.25 3.61
1975 2001 5.194432 AGAGCGAAGACTCTAATACCAAGA 58.806 41.667 0.00 0.00 45.25 3.02
1976 2002 5.830991 AGAGCGAAGACTCTAATACCAAGAT 59.169 40.000 0.00 0.00 45.25 2.40
1977 2003 6.999272 AGAGCGAAGACTCTAATACCAAGATA 59.001 38.462 0.00 0.00 45.25 1.98
1978 2004 7.174253 AGAGCGAAGACTCTAATACCAAGATAG 59.826 40.741 0.00 0.00 45.25 2.08
1979 2005 6.773685 AGCGAAGACTCTAATACCAAGATAGT 59.226 38.462 0.00 0.00 0.00 2.12
1980 2006 7.285858 AGCGAAGACTCTAATACCAAGATAGTT 59.714 37.037 0.00 0.00 0.00 2.24
1981 2007 7.921745 GCGAAGACTCTAATACCAAGATAGTTT 59.078 37.037 0.00 0.00 0.00 2.66
2003 2029 9.698309 AGTTTATTAACTAGATCATGGATGACG 57.302 33.333 0.00 0.00 42.73 4.35
2004 2030 8.436200 GTTTATTAACTAGATCATGGATGACGC 58.564 37.037 0.00 0.00 40.03 5.19
2005 2031 2.713895 ACTAGATCATGGATGACGCG 57.286 50.000 3.53 3.53 40.03 6.01
2006 2032 1.336332 ACTAGATCATGGATGACGCGC 60.336 52.381 5.73 0.00 40.03 6.86
2007 2033 0.387239 TAGATCATGGATGACGCGCG 60.387 55.000 30.96 30.96 40.03 6.86
2008 2034 1.951130 GATCATGGATGACGCGCGT 60.951 57.895 38.52 38.52 40.03 6.01
2009 2035 1.490693 GATCATGGATGACGCGCGTT 61.491 55.000 38.03 23.32 40.03 4.84
2010 2036 1.765161 ATCATGGATGACGCGCGTTG 61.765 55.000 38.03 28.37 40.03 4.10
2011 2037 3.864686 ATGGATGACGCGCGTTGC 61.865 61.111 38.03 27.05 41.47 4.17
2013 2039 4.505217 GGATGACGCGCGTTGCTG 62.505 66.667 38.03 6.52 43.27 4.41
2022 2048 2.202349 GCGTTGCTGCGTTCATCC 60.202 61.111 0.00 0.00 0.00 3.51
2023 2049 2.965147 GCGTTGCTGCGTTCATCCA 61.965 57.895 0.00 0.00 0.00 3.41
2024 2050 1.796151 CGTTGCTGCGTTCATCCAT 59.204 52.632 0.00 0.00 0.00 3.41
2025 2051 0.168788 CGTTGCTGCGTTCATCCATT 59.831 50.000 0.00 0.00 0.00 3.16
2026 2052 1.401409 CGTTGCTGCGTTCATCCATTT 60.401 47.619 0.00 0.00 0.00 2.32
2027 2053 2.253603 GTTGCTGCGTTCATCCATTTC 58.746 47.619 0.00 0.00 0.00 2.17
2028 2054 1.825090 TGCTGCGTTCATCCATTTCT 58.175 45.000 0.00 0.00 0.00 2.52
2029 2055 2.161855 TGCTGCGTTCATCCATTTCTT 58.838 42.857 0.00 0.00 0.00 2.52
2030 2056 2.162208 TGCTGCGTTCATCCATTTCTTC 59.838 45.455 0.00 0.00 0.00 2.87
2031 2057 2.162208 GCTGCGTTCATCCATTTCTTCA 59.838 45.455 0.00 0.00 0.00 3.02
2032 2058 3.366273 GCTGCGTTCATCCATTTCTTCAA 60.366 43.478 0.00 0.00 0.00 2.69
2033 2059 4.676196 GCTGCGTTCATCCATTTCTTCAAT 60.676 41.667 0.00 0.00 0.00 2.57
2034 2060 5.449041 GCTGCGTTCATCCATTTCTTCAATA 60.449 40.000 0.00 0.00 0.00 1.90
2035 2061 6.698008 TGCGTTCATCCATTTCTTCAATAT 57.302 33.333 0.00 0.00 0.00 1.28
2036 2062 7.520453 GCTGCGTTCATCCATTTCTTCAATATA 60.520 37.037 0.00 0.00 0.00 0.86
2037 2063 8.219546 TGCGTTCATCCATTTCTTCAATATAA 57.780 30.769 0.00 0.00 0.00 0.98
2038 2064 8.849168 TGCGTTCATCCATTTCTTCAATATAAT 58.151 29.630 0.00 0.00 0.00 1.28
2039 2065 9.121517 GCGTTCATCCATTTCTTCAATATAATG 57.878 33.333 0.00 0.00 0.00 1.90
2064 2090 9.337396 TGATAGGAATTATGTAAACATGTGGAC 57.663 33.333 0.00 0.74 37.15 4.02
2065 2091 9.337396 GATAGGAATTATGTAAACATGTGGACA 57.663 33.333 13.74 13.74 37.15 4.02
2066 2092 7.391148 AGGAATTATGTAAACATGTGGACAC 57.609 36.000 13.67 4.32 37.15 3.67
2067 2093 6.945435 AGGAATTATGTAAACATGTGGACACA 59.055 34.615 13.67 7.68 46.44 3.72
2148 2399 2.867975 AGCCTTACGTACACACAACAAC 59.132 45.455 0.00 0.00 0.00 3.32
2154 2405 2.092524 ACGTACACACAACAACACGAAC 59.907 45.455 0.00 0.00 33.81 3.95
2166 2417 1.153353 ACACGAACCAATTACAGCCG 58.847 50.000 0.00 0.00 0.00 5.52
2169 2420 0.732571 CGAACCAATTACAGCCGCAT 59.267 50.000 0.00 0.00 0.00 4.73
2198 2449 7.820386 TCAGCGACACTTAATTTAATCTAACCA 59.180 33.333 0.00 0.00 0.00 3.67
2235 2883 1.070843 CCACGTCACAAGTGCGTTTAG 60.071 52.381 16.01 8.50 39.75 1.85
2264 2912 0.963962 TAGGCGGACGAAAACTCTGT 59.036 50.000 0.00 0.00 0.00 3.41
2284 2932 3.971109 GAGAAAGTTCCCCGCCCCG 62.971 68.421 0.00 0.00 0.00 5.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 1.212935 GCCTTCCTCTATGGCCTTTGA 59.787 52.381 3.32 3.08 41.55 2.69
83 84 2.665185 ACGTTGGCCAGAAGACGC 60.665 61.111 23.97 2.38 38.97 5.19
236 237 4.394712 GAGTGGTGGTGGCGGAGG 62.395 72.222 0.00 0.00 0.00 4.30
237 238 3.302347 GAGAGTGGTGGTGGCGGAG 62.302 68.421 0.00 0.00 0.00 4.63
238 239 3.311110 GAGAGTGGTGGTGGCGGA 61.311 66.667 0.00 0.00 0.00 5.54
239 240 4.394712 GGAGAGTGGTGGTGGCGG 62.395 72.222 0.00 0.00 0.00 6.13
240 241 4.394712 GGGAGAGTGGTGGTGGCG 62.395 72.222 0.00 0.00 0.00 5.69
241 242 4.035102 GGGGAGAGTGGTGGTGGC 62.035 72.222 0.00 0.00 0.00 5.01
275 276 4.778842 ACTGCTAATTAAGATCGTTGCG 57.221 40.909 0.00 0.00 0.00 4.85
276 277 6.830114 ACTACTGCTAATTAAGATCGTTGC 57.170 37.500 0.00 0.00 0.00 4.17
277 278 9.678941 TGATACTACTGCTAATTAAGATCGTTG 57.321 33.333 0.00 0.00 0.00 4.10
278 279 9.680315 GTGATACTACTGCTAATTAAGATCGTT 57.320 33.333 0.00 0.00 0.00 3.85
279 280 8.847196 TGTGATACTACTGCTAATTAAGATCGT 58.153 33.333 0.00 0.00 0.00 3.73
280 281 9.847706 ATGTGATACTACTGCTAATTAAGATCG 57.152 33.333 0.00 0.00 0.00 3.69
282 283 9.935241 CCATGTGATACTACTGCTAATTAAGAT 57.065 33.333 0.00 0.00 0.00 2.40
309 310 1.968540 GGAAGTGGGAGTGCTGCAC 60.969 63.158 24.59 24.59 34.10 4.57
312 313 2.352805 GGGGAAGTGGGAGTGCTG 59.647 66.667 0.00 0.00 0.00 4.41
316 317 0.912487 TAATGCGGGGAAGTGGGAGT 60.912 55.000 0.00 0.00 0.00 3.85
420 428 3.664107 TCTCACGAATCAAAGGGAACTG 58.336 45.455 0.00 0.00 42.68 3.16
434 442 2.552315 GTGCTGGGAAAATTTCTCACGA 59.448 45.455 3.84 0.00 34.61 4.35
443 451 1.686355 TCAACACGTGCTGGGAAAAT 58.314 45.000 17.22 0.00 0.00 1.82
505 513 3.070159 TCTTCCTGACAACACTTGGAGAG 59.930 47.826 0.00 0.00 34.12 3.20
510 518 6.382869 AAGATTTCTTCCTGACAACACTTG 57.617 37.500 0.00 0.00 0.00 3.16
598 606 5.654317 TGATACTCTCGTTACGATCAGTC 57.346 43.478 18.61 10.21 34.61 3.51
600 608 7.266545 CGTTTATGATACTCTCGTTACGATCAG 59.733 40.741 8.21 9.91 34.34 2.90
601 609 7.067728 CGTTTATGATACTCTCGTTACGATCA 58.932 38.462 8.21 9.18 34.34 2.92
602 610 6.519078 CCGTTTATGATACTCTCGTTACGATC 59.481 42.308 8.21 2.99 34.34 3.69
603 611 6.017605 ACCGTTTATGATACTCTCGTTACGAT 60.018 38.462 8.21 0.00 34.34 3.73
604 612 5.294306 ACCGTTTATGATACTCTCGTTACGA 59.706 40.000 7.39 7.39 34.34 3.43
605 613 5.505286 ACCGTTTATGATACTCTCGTTACG 58.495 41.667 0.00 0.00 33.23 3.18
606 614 8.285394 TGATACCGTTTATGATACTCTCGTTAC 58.715 37.037 0.00 0.00 0.00 2.50
607 615 8.382030 TGATACCGTTTATGATACTCTCGTTA 57.618 34.615 0.00 0.00 0.00 3.18
608 616 7.268199 TGATACCGTTTATGATACTCTCGTT 57.732 36.000 0.00 0.00 0.00 3.85
609 617 6.872628 TGATACCGTTTATGATACTCTCGT 57.127 37.500 0.00 0.00 0.00 4.18
610 618 6.251589 GCATGATACCGTTTATGATACTCTCG 59.748 42.308 0.00 0.00 0.00 4.04
611 619 7.090808 TGCATGATACCGTTTATGATACTCTC 58.909 38.462 0.00 0.00 0.00 3.20
612 620 6.993079 TGCATGATACCGTTTATGATACTCT 58.007 36.000 0.00 0.00 0.00 3.24
613 621 7.010552 GGATGCATGATACCGTTTATGATACTC 59.989 40.741 2.46 0.00 0.00 2.59
614 622 6.818644 GGATGCATGATACCGTTTATGATACT 59.181 38.462 2.46 0.00 0.00 2.12
615 623 6.818644 AGGATGCATGATACCGTTTATGATAC 59.181 38.462 2.46 0.00 0.00 2.24
616 624 6.946340 AGGATGCATGATACCGTTTATGATA 58.054 36.000 2.46 0.00 0.00 2.15
617 625 5.809001 AGGATGCATGATACCGTTTATGAT 58.191 37.500 2.46 0.00 0.00 2.45
618 626 5.227569 AGGATGCATGATACCGTTTATGA 57.772 39.130 2.46 0.00 0.00 2.15
619 627 6.650807 AGTTAGGATGCATGATACCGTTTATG 59.349 38.462 2.46 0.00 0.00 1.90
620 628 6.769512 AGTTAGGATGCATGATACCGTTTAT 58.230 36.000 2.46 0.00 0.00 1.40
621 629 6.169557 AGTTAGGATGCATGATACCGTTTA 57.830 37.500 2.46 0.00 0.00 2.01
622 630 5.036117 AGTTAGGATGCATGATACCGTTT 57.964 39.130 2.46 0.00 0.00 3.60
623 631 4.689612 AGTTAGGATGCATGATACCGTT 57.310 40.909 2.46 0.00 0.00 4.44
624 632 5.077564 TCTAGTTAGGATGCATGATACCGT 58.922 41.667 2.46 0.00 0.00 4.83
625 633 5.644977 TCTAGTTAGGATGCATGATACCG 57.355 43.478 2.46 0.00 0.00 4.02
626 634 8.854614 AAAATCTAGTTAGGATGCATGATACC 57.145 34.615 2.46 0.00 0.00 2.73
660 668 9.513906 TCTTTCCTCATTTAATTGTATGTCACA 57.486 29.630 0.00 0.00 34.51 3.58
668 676 9.136323 ACACTCTTTCTTTCCTCATTTAATTGT 57.864 29.630 0.00 0.00 0.00 2.71
674 682 9.660180 GATACTACACTCTTTCTTTCCTCATTT 57.340 33.333 0.00 0.00 0.00 2.32
675 683 8.816894 TGATACTACACTCTTTCTTTCCTCATT 58.183 33.333 0.00 0.00 0.00 2.57
676 684 8.367660 TGATACTACACTCTTTCTTTCCTCAT 57.632 34.615 0.00 0.00 0.00 2.90
677 685 7.776618 TGATACTACACTCTTTCTTTCCTCA 57.223 36.000 0.00 0.00 0.00 3.86
728 736 9.787532 GTTATGCATGACACAAAGTAATACAAT 57.212 29.630 16.16 0.00 0.00 2.71
729 737 8.787852 TGTTATGCATGACACAAAGTAATACAA 58.212 29.630 19.43 0.00 0.00 2.41
730 738 8.329203 TGTTATGCATGACACAAAGTAATACA 57.671 30.769 19.43 0.00 0.00 2.29
731 739 9.787532 ATTGTTATGCATGACACAAAGTAATAC 57.212 29.630 22.61 0.00 33.02 1.89
842 850 9.914834 GCTGGTTGTAATGGGGAATATTATATA 57.085 33.333 0.00 0.00 0.00 0.86
843 851 8.623769 AGCTGGTTGTAATGGGGAATATTATAT 58.376 33.333 0.00 0.00 0.00 0.86
844 852 7.995663 AGCTGGTTGTAATGGGGAATATTATA 58.004 34.615 0.00 0.00 0.00 0.98
845 853 6.863322 AGCTGGTTGTAATGGGGAATATTAT 58.137 36.000 0.00 0.00 0.00 1.28
846 854 6.274322 AGCTGGTTGTAATGGGGAATATTA 57.726 37.500 0.00 0.00 0.00 0.98
847 855 5.142806 AGCTGGTTGTAATGGGGAATATT 57.857 39.130 0.00 0.00 0.00 1.28
848 856 4.814224 AGCTGGTTGTAATGGGGAATAT 57.186 40.909 0.00 0.00 0.00 1.28
849 857 4.601406 AAGCTGGTTGTAATGGGGAATA 57.399 40.909 0.00 0.00 0.00 1.75
850 858 3.473113 AAGCTGGTTGTAATGGGGAAT 57.527 42.857 0.00 0.00 0.00 3.01
851 859 2.990740 AAGCTGGTTGTAATGGGGAA 57.009 45.000 0.00 0.00 0.00 3.97
852 860 3.074687 TGTTAAGCTGGTTGTAATGGGGA 59.925 43.478 1.72 0.00 0.00 4.81
853 861 3.426615 TGTTAAGCTGGTTGTAATGGGG 58.573 45.455 1.72 0.00 0.00 4.96
854 862 5.461032 TTTGTTAAGCTGGTTGTAATGGG 57.539 39.130 1.72 0.00 0.00 4.00
868 876 1.442017 GGCGCGTGGCTTTGTTAAG 60.442 57.895 16.19 0.00 42.94 1.85
869 877 2.640421 GGCGCGTGGCTTTGTTAA 59.360 55.556 16.19 0.00 42.94 2.01
870 878 3.358707 GGGCGCGTGGCTTTGTTA 61.359 61.111 22.53 0.00 42.94 2.41
913 921 4.959349 ACCTAGGGTGGTTGACGA 57.041 55.556 14.81 0.00 36.89 4.20
964 975 8.181904 AGAGAAAAAGGAAATGAACATTGCTA 57.818 30.769 5.63 0.00 0.00 3.49
1140 1151 1.205657 GATTAATCGGCTTCACGCGA 58.794 50.000 15.93 0.00 40.44 5.87
1188 1199 1.635817 ATGGCCGCACTCTACCCATT 61.636 55.000 0.00 0.00 32.61 3.16
1360 1371 2.901249 ACACAAGCGTTACACAGAAGT 58.099 42.857 0.00 0.00 0.00 3.01
1386 1397 2.284190 TCAGCATGTTTCACAACACGA 58.716 42.857 0.00 0.00 45.88 4.35
1425 1436 8.097662 GGAGGGAGTATTTGTGAAGATAATAGG 58.902 40.741 0.00 0.00 0.00 2.57
1586 1597 8.761497 CGATTACAATGTACTATTTCCGTTCAT 58.239 33.333 0.00 0.00 0.00 2.57
1643 1669 4.011698 TGTCTACTGTCGTAAGCATACCA 58.988 43.478 0.00 0.00 37.18 3.25
1648 1674 2.228103 CAGGTGTCTACTGTCGTAAGCA 59.772 50.000 0.00 0.00 37.18 3.91
1651 1677 3.216800 ACACAGGTGTCTACTGTCGTAA 58.783 45.455 0.00 0.00 45.50 3.18
1666 1692 7.973388 TGTTAAGTCAAATTTCAGAAACACAGG 59.027 33.333 0.00 0.00 0.00 4.00
1667 1693 8.798153 GTGTTAAGTCAAATTTCAGAAACACAG 58.202 33.333 18.68 0.00 42.16 3.66
1668 1694 8.300286 TGTGTTAAGTCAAATTTCAGAAACACA 58.700 29.630 20.62 20.62 46.89 3.72
1669 1695 8.682128 TGTGTTAAGTCAAATTTCAGAAACAC 57.318 30.769 17.66 17.66 42.64 3.32
1670 1696 9.299963 CATGTGTTAAGTCAAATTTCAGAAACA 57.700 29.630 0.00 0.00 0.00 2.83
1671 1697 9.515020 TCATGTGTTAAGTCAAATTTCAGAAAC 57.485 29.630 0.00 0.00 0.00 2.78
1672 1698 9.515020 GTCATGTGTTAAGTCAAATTTCAGAAA 57.485 29.630 0.00 0.00 0.00 2.52
1673 1699 7.855409 CGTCATGTGTTAAGTCAAATTTCAGAA 59.145 33.333 0.00 0.00 0.00 3.02
1674 1700 7.011950 ACGTCATGTGTTAAGTCAAATTTCAGA 59.988 33.333 0.00 0.00 0.00 3.27
1675 1701 7.112009 CACGTCATGTGTTAAGTCAAATTTCAG 59.888 37.037 0.00 0.00 43.88 3.02
1676 1702 6.909895 CACGTCATGTGTTAAGTCAAATTTCA 59.090 34.615 0.00 0.00 43.88 2.69
1677 1703 7.307839 CACGTCATGTGTTAAGTCAAATTTC 57.692 36.000 0.00 0.00 43.88 2.17
1692 1718 3.971871 CGTAAAAACAATGCACGTCATGT 59.028 39.130 0.00 0.00 35.13 3.21
1693 1719 4.086524 GTCGTAAAAACAATGCACGTCATG 59.913 41.667 0.00 0.00 35.13 3.07
1694 1720 4.215965 GTCGTAAAAACAATGCACGTCAT 58.784 39.130 0.00 0.00 36.87 3.06
1695 1721 3.063588 TGTCGTAAAAACAATGCACGTCA 59.936 39.130 0.00 0.00 34.39 4.35
1696 1722 3.609475 TGTCGTAAAAACAATGCACGTC 58.391 40.909 0.00 0.00 34.39 4.34
1697 1723 3.064271 ACTGTCGTAAAAACAATGCACGT 59.936 39.130 0.00 0.00 34.39 4.49
1698 1724 3.613563 ACTGTCGTAAAAACAATGCACG 58.386 40.909 0.00 0.00 0.00 5.34
1699 1725 5.844396 GTCTACTGTCGTAAAAACAATGCAC 59.156 40.000 0.00 0.00 0.00 4.57
1700 1726 5.332732 CGTCTACTGTCGTAAAAACAATGCA 60.333 40.000 0.00 0.00 0.00 3.96
1701 1727 5.070862 CGTCTACTGTCGTAAAAACAATGC 58.929 41.667 0.00 0.00 0.00 3.56
1702 1728 5.176223 ACCGTCTACTGTCGTAAAAACAATG 59.824 40.000 0.00 0.00 0.00 2.82
1703 1729 5.291971 ACCGTCTACTGTCGTAAAAACAAT 58.708 37.500 0.00 0.00 0.00 2.71
1704 1730 4.681744 ACCGTCTACTGTCGTAAAAACAA 58.318 39.130 0.00 0.00 0.00 2.83
1705 1731 4.305989 ACCGTCTACTGTCGTAAAAACA 57.694 40.909 0.00 0.00 0.00 2.83
1706 1732 4.318332 CGTACCGTCTACTGTCGTAAAAAC 59.682 45.833 0.00 0.00 0.00 2.43
1707 1733 4.463209 CGTACCGTCTACTGTCGTAAAAA 58.537 43.478 0.00 0.00 0.00 1.94
1708 1734 3.666902 GCGTACCGTCTACTGTCGTAAAA 60.667 47.826 0.00 0.00 0.00 1.52
1709 1735 2.159707 GCGTACCGTCTACTGTCGTAAA 60.160 50.000 0.00 0.00 0.00 2.01
1710 1736 1.393539 GCGTACCGTCTACTGTCGTAA 59.606 52.381 0.00 0.00 0.00 3.18
1711 1737 0.999406 GCGTACCGTCTACTGTCGTA 59.001 55.000 0.00 0.00 0.00 3.43
1712 1738 0.950555 TGCGTACCGTCTACTGTCGT 60.951 55.000 0.00 0.00 0.00 4.34
1713 1739 0.519999 GTGCGTACCGTCTACTGTCG 60.520 60.000 0.00 0.00 0.00 4.35
1714 1740 0.518636 TGTGCGTACCGTCTACTGTC 59.481 55.000 0.00 0.00 0.00 3.51
1715 1741 0.520404 CTGTGCGTACCGTCTACTGT 59.480 55.000 0.00 0.00 0.00 3.55
1716 1742 0.520404 ACTGTGCGTACCGTCTACTG 59.480 55.000 0.00 0.00 0.00 2.74
1717 1743 2.005451 CTACTGTGCGTACCGTCTACT 58.995 52.381 3.66 0.00 0.00 2.57
1718 1744 2.002586 TCTACTGTGCGTACCGTCTAC 58.997 52.381 3.66 0.00 0.00 2.59
1719 1745 2.002586 GTCTACTGTGCGTACCGTCTA 58.997 52.381 3.66 0.00 0.00 2.59
1720 1746 0.801251 GTCTACTGTGCGTACCGTCT 59.199 55.000 3.66 0.00 0.00 4.18
1721 1747 0.518636 TGTCTACTGTGCGTACCGTC 59.481 55.000 3.66 0.00 0.00 4.79
1722 1748 0.239347 GTGTCTACTGTGCGTACCGT 59.761 55.000 5.95 5.95 0.00 4.83
1723 1749 0.455633 GGTGTCTACTGTGCGTACCG 60.456 60.000 0.00 0.00 0.00 4.02
1724 1750 0.108945 GGGTGTCTACTGTGCGTACC 60.109 60.000 0.00 0.00 0.00 3.34
1725 1751 0.455633 CGGGTGTCTACTGTGCGTAC 60.456 60.000 0.00 0.00 0.00 3.67
1726 1752 0.890542 ACGGGTGTCTACTGTGCGTA 60.891 55.000 0.00 0.00 0.00 4.42
1727 1753 2.198287 ACGGGTGTCTACTGTGCGT 61.198 57.895 0.00 0.00 0.00 5.24
1728 1754 1.733041 CACGGGTGTCTACTGTGCG 60.733 63.158 0.00 0.00 0.00 5.34
1729 1755 0.944311 CACACGGGTGTCTACTGTGC 60.944 60.000 10.41 0.00 42.83 4.57
1730 1756 3.195041 CACACGGGTGTCTACTGTG 57.805 57.895 10.41 3.06 42.83 3.66
1740 1766 0.948678 CAAATTTCGGACACACGGGT 59.051 50.000 0.00 0.00 0.00 5.28
1741 1767 1.069500 GTCAAATTTCGGACACACGGG 60.069 52.381 4.27 0.00 34.22 5.28
1751 1777 7.931493 CACATCATGTGTTAAGTCAAATTTCG 58.069 34.615 9.87 0.00 43.08 3.46
1773 1799 6.859017 TCTACTATCGTAGAAACAATGCACA 58.141 36.000 4.69 0.00 46.80 4.57
1785 1811 7.165647 CGGATATACGAGTGTCTACTATCGTAG 59.834 44.444 0.00 0.00 40.58 3.51
1786 1812 6.969473 CGGATATACGAGTGTCTACTATCGTA 59.031 42.308 0.00 16.81 41.11 3.43
1787 1813 5.804473 CGGATATACGAGTGTCTACTATCGT 59.196 44.000 0.00 14.42 39.65 3.73
1788 1814 6.032717 TCGGATATACGAGTGTCTACTATCG 58.967 44.000 5.77 6.15 38.06 2.92
1789 1815 7.824704 TTCGGATATACGAGTGTCTACTATC 57.175 40.000 10.49 0.00 44.47 2.08
1790 1816 8.789825 ATTTCGGATATACGAGTGTCTACTAT 57.210 34.615 10.49 0.00 44.47 2.12
1791 1817 8.613060 AATTTCGGATATACGAGTGTCTACTA 57.387 34.615 10.49 0.00 44.47 1.82
1792 1818 7.507733 AATTTCGGATATACGAGTGTCTACT 57.492 36.000 10.49 0.00 44.47 2.57
1793 1819 7.859377 TCAAATTTCGGATATACGAGTGTCTAC 59.141 37.037 10.49 0.00 44.47 2.59
1794 1820 7.859377 GTCAAATTTCGGATATACGAGTGTCTA 59.141 37.037 10.49 0.00 44.47 2.59
1795 1821 6.696148 GTCAAATTTCGGATATACGAGTGTCT 59.304 38.462 10.49 0.00 44.47 3.41
1796 1822 6.696148 AGTCAAATTTCGGATATACGAGTGTC 59.304 38.462 10.49 5.98 44.47 3.67
1797 1823 6.570692 AGTCAAATTTCGGATATACGAGTGT 58.429 36.000 10.49 0.00 44.47 3.55
1798 1824 7.464830 AAGTCAAATTTCGGATATACGAGTG 57.535 36.000 10.49 7.91 44.47 3.51
1799 1825 9.028185 GTTAAGTCAAATTTCGGATATACGAGT 57.972 33.333 10.49 0.68 44.47 4.18
1800 1826 9.027129 TGTTAAGTCAAATTTCGGATATACGAG 57.973 33.333 10.49 0.00 44.47 4.18
1801 1827 8.810427 GTGTTAAGTCAAATTTCGGATATACGA 58.190 33.333 5.77 5.77 41.76 3.43
1802 1828 8.597227 TGTGTTAAGTCAAATTTCGGATATACG 58.403 33.333 0.00 0.00 0.00 3.06
1805 1831 9.173021 TCATGTGTTAAGTCAAATTTCGGATAT 57.827 29.630 0.00 0.00 0.00 1.63
1806 1832 8.447833 GTCATGTGTTAAGTCAAATTTCGGATA 58.552 33.333 0.00 0.00 0.00 2.59
1807 1833 7.174946 AGTCATGTGTTAAGTCAAATTTCGGAT 59.825 33.333 0.00 0.00 0.00 4.18
1808 1834 6.485313 AGTCATGTGTTAAGTCAAATTTCGGA 59.515 34.615 0.00 0.00 0.00 4.55
1809 1835 6.668323 AGTCATGTGTTAAGTCAAATTTCGG 58.332 36.000 0.00 0.00 0.00 4.30
1810 1836 9.658475 TTAAGTCATGTGTTAAGTCAAATTTCG 57.342 29.630 0.00 0.00 0.00 3.46
1813 1839 9.730420 GTGTTAAGTCATGTGTTAAGTCAAATT 57.270 29.630 0.00 0.00 0.00 1.82
1814 1840 8.898761 TGTGTTAAGTCATGTGTTAAGTCAAAT 58.101 29.630 0.00 0.00 0.00 2.32
1815 1841 8.270080 TGTGTTAAGTCATGTGTTAAGTCAAA 57.730 30.769 0.00 0.00 0.00 2.69
1816 1842 7.851387 TGTGTTAAGTCATGTGTTAAGTCAA 57.149 32.000 0.00 0.00 0.00 3.18
1817 1843 7.713073 TCATGTGTTAAGTCATGTGTTAAGTCA 59.287 33.333 15.09 2.01 41.22 3.41
1818 1844 8.083462 TCATGTGTTAAGTCATGTGTTAAGTC 57.917 34.615 15.09 0.00 41.22 3.01
1819 1845 8.621532 ATCATGTGTTAAGTCATGTGTTAAGT 57.378 30.769 15.09 0.00 41.22 2.24
1821 1847 9.936759 TCTATCATGTGTTAAGTCATGTGTTAA 57.063 29.630 15.09 0.00 41.22 2.01
1823 1849 9.453572 AATCTATCATGTGTTAAGTCATGTGTT 57.546 29.630 15.09 7.91 41.22 3.32
1824 1850 8.886719 CAATCTATCATGTGTTAAGTCATGTGT 58.113 33.333 15.09 10.24 41.22 3.72
1825 1851 8.886719 ACAATCTATCATGTGTTAAGTCATGTG 58.113 33.333 15.09 9.90 41.22 3.21
1845 1871 8.967218 CACGTGAAAAACATTCAATTACAATCT 58.033 29.630 10.90 0.00 0.00 2.40
1846 1872 7.735586 GCACGTGAAAAACATTCAATTACAATC 59.264 33.333 22.23 0.00 0.00 2.67
1847 1873 7.223582 TGCACGTGAAAAACATTCAATTACAAT 59.776 29.630 22.23 0.00 0.00 2.71
1848 1874 6.531594 TGCACGTGAAAAACATTCAATTACAA 59.468 30.769 22.23 0.00 0.00 2.41
1849 1875 6.036470 TGCACGTGAAAAACATTCAATTACA 58.964 32.000 22.23 0.00 0.00 2.41
1850 1876 6.503616 TGCACGTGAAAAACATTCAATTAC 57.496 33.333 22.23 0.00 0.00 1.89
1851 1877 6.199908 CCTTGCACGTGAAAAACATTCAATTA 59.800 34.615 22.23 0.00 0.00 1.40
1852 1878 5.006552 CCTTGCACGTGAAAAACATTCAATT 59.993 36.000 22.23 0.00 0.00 2.32
1853 1879 4.507388 CCTTGCACGTGAAAAACATTCAAT 59.493 37.500 22.23 0.00 0.00 2.57
1854 1880 3.862267 CCTTGCACGTGAAAAACATTCAA 59.138 39.130 22.23 9.38 0.00 2.69
1855 1881 3.129462 TCCTTGCACGTGAAAAACATTCA 59.871 39.130 22.23 0.53 0.00 2.57
1856 1882 3.485743 GTCCTTGCACGTGAAAAACATTC 59.514 43.478 22.23 0.00 0.00 2.67
1857 1883 3.130340 AGTCCTTGCACGTGAAAAACATT 59.870 39.130 22.23 0.00 0.00 2.71
1858 1884 2.687935 AGTCCTTGCACGTGAAAAACAT 59.312 40.909 22.23 0.00 0.00 2.71
1859 1885 2.088423 AGTCCTTGCACGTGAAAAACA 58.912 42.857 22.23 3.91 0.00 2.83
1860 1886 2.844122 AGTCCTTGCACGTGAAAAAC 57.156 45.000 22.23 15.85 0.00 2.43
1861 1887 4.966965 TTTAGTCCTTGCACGTGAAAAA 57.033 36.364 22.23 9.11 0.00 1.94
1862 1888 5.508200 AATTTAGTCCTTGCACGTGAAAA 57.492 34.783 22.23 11.79 0.00 2.29
1863 1889 5.508200 AAATTTAGTCCTTGCACGTGAAA 57.492 34.783 22.23 15.48 0.00 2.69
1864 1890 6.483974 TCTTAAATTTAGTCCTTGCACGTGAA 59.516 34.615 22.23 5.66 0.00 3.18
1865 1891 5.992829 TCTTAAATTTAGTCCTTGCACGTGA 59.007 36.000 22.23 1.04 0.00 4.35
1866 1892 6.236017 TCTTAAATTTAGTCCTTGCACGTG 57.764 37.500 12.28 12.28 0.00 4.49
1867 1893 8.556213 TTATCTTAAATTTAGTCCTTGCACGT 57.444 30.769 0.00 0.00 0.00 4.49
1868 1894 9.834628 TTTTATCTTAAATTTAGTCCTTGCACG 57.165 29.630 0.00 0.00 0.00 5.34
1893 1919 9.624373 ACATAGATTAGATCTGCAAATGAGTTT 57.376 29.630 5.18 0.00 40.51 2.66
1895 1921 9.926158 CTACATAGATTAGATCTGCAAATGAGT 57.074 33.333 5.18 0.00 40.51 3.41
1896 1922 9.926158 ACTACATAGATTAGATCTGCAAATGAG 57.074 33.333 5.18 5.54 40.51 2.90
1902 1928 9.451002 GGTAGTACTACATAGATTAGATCTGCA 57.549 37.037 29.38 0.00 37.72 4.41
1903 1929 9.675464 AGGTAGTACTACATAGATTAGATCTGC 57.325 37.037 29.38 10.12 37.72 4.26
1908 1934 9.703892 GACGAAGGTAGTACTACATAGATTAGA 57.296 37.037 29.38 0.00 37.78 2.10
1909 1935 9.709495 AGACGAAGGTAGTACTACATAGATTAG 57.291 37.037 29.38 18.11 37.78 1.73
1910 1936 9.486497 CAGACGAAGGTAGTACTACATAGATTA 57.514 37.037 29.38 0.00 37.78 1.75
1911 1937 7.444792 CCAGACGAAGGTAGTACTACATAGATT 59.555 40.741 29.38 17.05 37.78 2.40
1912 1938 6.935771 CCAGACGAAGGTAGTACTACATAGAT 59.064 42.308 29.38 12.00 37.78 1.98
1913 1939 6.286758 CCAGACGAAGGTAGTACTACATAGA 58.713 44.000 29.38 0.00 37.78 1.98
1914 1940 5.469421 CCCAGACGAAGGTAGTACTACATAG 59.531 48.000 29.38 22.39 37.78 2.23
1915 1941 5.104360 ACCCAGACGAAGGTAGTACTACATA 60.104 44.000 29.38 0.00 37.78 2.29
1916 1942 4.205587 CCCAGACGAAGGTAGTACTACAT 58.794 47.826 29.38 22.63 37.78 2.29
1917 1943 3.009473 ACCCAGACGAAGGTAGTACTACA 59.991 47.826 29.38 0.00 37.78 2.74
1918 1944 3.615155 ACCCAGACGAAGGTAGTACTAC 58.385 50.000 22.53 22.53 33.52 2.73
1919 1945 4.307032 AACCCAGACGAAGGTAGTACTA 57.693 45.455 0.00 0.00 34.45 1.82
1920 1946 2.895242 ACCCAGACGAAGGTAGTACT 57.105 50.000 0.00 0.00 33.52 2.73
1921 1947 3.949842 AAACCCAGACGAAGGTAGTAC 57.050 47.619 0.00 0.00 34.45 2.73
1922 1948 6.418057 TTTTAAACCCAGACGAAGGTAGTA 57.582 37.500 0.00 0.00 34.45 1.82
1923 1949 4.961438 TTTAAACCCAGACGAAGGTAGT 57.039 40.909 0.00 0.00 34.45 2.73
1924 1950 5.334646 GCTTTTTAAACCCAGACGAAGGTAG 60.335 44.000 0.00 0.00 34.45 3.18
1925 1951 4.516321 GCTTTTTAAACCCAGACGAAGGTA 59.484 41.667 0.00 0.00 34.45 3.08
1926 1952 3.317149 GCTTTTTAAACCCAGACGAAGGT 59.683 43.478 0.00 0.00 38.27 3.50
1927 1953 3.305131 GGCTTTTTAAACCCAGACGAAGG 60.305 47.826 0.00 0.00 0.00 3.46
1928 1954 3.305131 GGGCTTTTTAAACCCAGACGAAG 60.305 47.826 7.36 0.00 43.64 3.79
1929 1955 2.624364 GGGCTTTTTAAACCCAGACGAA 59.376 45.455 7.36 0.00 43.64 3.85
1930 1956 2.232399 GGGCTTTTTAAACCCAGACGA 58.768 47.619 7.36 0.00 43.64 4.20
1931 1957 2.717580 GGGCTTTTTAAACCCAGACG 57.282 50.000 7.36 0.00 43.64 4.18
1936 1962 2.609491 CGCTCTTGGGCTTTTTAAACCC 60.609 50.000 5.58 5.58 44.52 4.11
1937 1963 2.295070 TCGCTCTTGGGCTTTTTAAACC 59.705 45.455 0.00 0.00 0.00 3.27
1938 1964 3.636282 TCGCTCTTGGGCTTTTTAAAC 57.364 42.857 0.00 0.00 0.00 2.01
1939 1965 3.886505 TCTTCGCTCTTGGGCTTTTTAAA 59.113 39.130 0.00 0.00 0.00 1.52
1940 1966 3.252458 GTCTTCGCTCTTGGGCTTTTTAA 59.748 43.478 0.00 0.00 0.00 1.52
1941 1967 2.812011 GTCTTCGCTCTTGGGCTTTTTA 59.188 45.455 0.00 0.00 0.00 1.52
1942 1968 1.609072 GTCTTCGCTCTTGGGCTTTTT 59.391 47.619 0.00 0.00 0.00 1.94
1943 1969 1.202818 AGTCTTCGCTCTTGGGCTTTT 60.203 47.619 0.00 0.00 0.00 2.27
1944 1970 0.398318 AGTCTTCGCTCTTGGGCTTT 59.602 50.000 0.00 0.00 0.00 3.51
1945 1971 0.036858 GAGTCTTCGCTCTTGGGCTT 60.037 55.000 0.00 0.00 32.99 4.35
1946 1972 0.902516 AGAGTCTTCGCTCTTGGGCT 60.903 55.000 0.00 0.00 42.69 5.19
1947 1973 0.818296 TAGAGTCTTCGCTCTTGGGC 59.182 55.000 0.00 0.00 42.69 5.36
1948 1974 3.810310 ATTAGAGTCTTCGCTCTTGGG 57.190 47.619 0.00 0.00 42.69 4.12
1949 1975 4.098044 TGGTATTAGAGTCTTCGCTCTTGG 59.902 45.833 0.00 0.00 42.69 3.61
1950 1976 5.250235 TGGTATTAGAGTCTTCGCTCTTG 57.750 43.478 0.00 0.00 42.69 3.02
1951 1977 5.652891 TCTTGGTATTAGAGTCTTCGCTCTT 59.347 40.000 0.00 0.00 42.69 2.85
1952 1978 5.194432 TCTTGGTATTAGAGTCTTCGCTCT 58.806 41.667 0.00 1.16 46.49 4.09
1953 1979 5.502153 TCTTGGTATTAGAGTCTTCGCTC 57.498 43.478 0.00 0.00 35.82 5.03
1954 1980 6.773685 ACTATCTTGGTATTAGAGTCTTCGCT 59.226 38.462 0.00 0.00 0.00 4.93
1955 1981 6.972722 ACTATCTTGGTATTAGAGTCTTCGC 58.027 40.000 0.00 0.00 0.00 4.70
1977 2003 9.698309 CGTCATCCATGATCTAGTTAATAAACT 57.302 33.333 0.00 0.00 42.75 2.66
1978 2004 8.436200 GCGTCATCCATGATCTAGTTAATAAAC 58.564 37.037 0.00 0.00 39.30 2.01
1979 2005 7.328493 CGCGTCATCCATGATCTAGTTAATAAA 59.672 37.037 0.00 0.00 39.30 1.40
1980 2006 6.806739 CGCGTCATCCATGATCTAGTTAATAA 59.193 38.462 0.00 0.00 39.30 1.40
1981 2007 6.322491 CGCGTCATCCATGATCTAGTTAATA 58.678 40.000 0.00 0.00 39.30 0.98
1982 2008 5.164233 CGCGTCATCCATGATCTAGTTAAT 58.836 41.667 0.00 0.00 39.30 1.40
1983 2009 4.546570 CGCGTCATCCATGATCTAGTTAA 58.453 43.478 0.00 0.00 39.30 2.01
1984 2010 3.611766 GCGCGTCATCCATGATCTAGTTA 60.612 47.826 8.43 0.00 39.30 2.24
1985 2011 2.864097 GCGCGTCATCCATGATCTAGTT 60.864 50.000 8.43 0.00 39.30 2.24
1986 2012 1.336332 GCGCGTCATCCATGATCTAGT 60.336 52.381 8.43 0.00 39.30 2.57
1987 2013 1.344458 GCGCGTCATCCATGATCTAG 58.656 55.000 8.43 0.00 39.30 2.43
1988 2014 0.387239 CGCGCGTCATCCATGATCTA 60.387 55.000 24.19 0.00 39.30 1.98
1989 2015 1.662760 CGCGCGTCATCCATGATCT 60.663 57.895 24.19 0.00 39.30 2.75
1990 2016 1.490693 AACGCGCGTCATCCATGATC 61.491 55.000 37.77 0.00 39.30 2.92
1991 2017 1.521457 AACGCGCGTCATCCATGAT 60.521 52.632 37.77 14.76 39.30 2.45
1992 2018 2.125713 AACGCGCGTCATCCATGA 60.126 55.556 37.77 0.00 0.00 3.07
1993 2019 2.021793 CAACGCGCGTCATCCATG 59.978 61.111 37.77 25.21 0.00 3.66
1994 2020 3.864686 GCAACGCGCGTCATCCAT 61.865 61.111 37.77 17.37 0.00 3.41
2005 2031 2.202349 GGATGAACGCAGCAACGC 60.202 61.111 0.00 0.00 36.19 4.84
2006 2032 0.168788 AATGGATGAACGCAGCAACG 59.831 50.000 0.00 0.00 39.50 4.10
2007 2033 2.095059 AGAAATGGATGAACGCAGCAAC 60.095 45.455 0.00 0.00 30.33 4.17
2008 2034 2.161855 AGAAATGGATGAACGCAGCAA 58.838 42.857 0.00 0.00 30.33 3.91
2009 2035 1.825090 AGAAATGGATGAACGCAGCA 58.175 45.000 0.00 0.00 30.33 4.41
2010 2036 2.162208 TGAAGAAATGGATGAACGCAGC 59.838 45.455 0.00 0.00 0.00 5.25
2011 2037 4.424061 TTGAAGAAATGGATGAACGCAG 57.576 40.909 0.00 0.00 0.00 5.18
2012 2038 6.698008 ATATTGAAGAAATGGATGAACGCA 57.302 33.333 0.00 0.00 0.00 5.24
2013 2039 9.121517 CATTATATTGAAGAAATGGATGAACGC 57.878 33.333 0.00 0.00 0.00 4.84
2038 2064 9.337396 GTCCACATGTTTACATAATTCCTATCA 57.663 33.333 0.00 0.00 34.26 2.15
2039 2065 9.337396 TGTCCACATGTTTACATAATTCCTATC 57.663 33.333 0.00 0.00 34.26 2.08
2040 2066 9.120538 GTGTCCACATGTTTACATAATTCCTAT 57.879 33.333 11.99 0.00 34.26 2.57
2041 2067 8.103935 TGTGTCCACATGTTTACATAATTCCTA 58.896 33.333 11.99 0.00 36.21 2.94
2042 2068 6.945435 TGTGTCCACATGTTTACATAATTCCT 59.055 34.615 11.99 0.00 36.21 3.36
2043 2069 7.151999 TGTGTCCACATGTTTACATAATTCC 57.848 36.000 11.99 1.46 36.21 3.01
2055 2081 7.802037 AGATCCATCTTTTATGTGTCCACATGT 60.802 37.037 20.33 0.00 42.21 3.21
2056 2082 6.544931 AGATCCATCTTTTATGTGTCCACATG 59.455 38.462 20.33 6.23 42.21 3.21
2057 2083 6.666678 AGATCCATCTTTTATGTGTCCACAT 58.333 36.000 16.42 16.42 43.55 3.21
2058 2084 6.065976 AGATCCATCTTTTATGTGTCCACA 57.934 37.500 2.09 2.09 38.80 4.17
2059 2085 9.209175 GTATAGATCCATCTTTTATGTGTCCAC 57.791 37.037 0.00 0.00 38.32 4.02
2060 2086 9.159254 AGTATAGATCCATCTTTTATGTGTCCA 57.841 33.333 0.00 0.00 38.32 4.02
2114 2140 2.921754 CGTAAGGCTGTGTGTACTTAGC 59.078 50.000 0.00 0.00 35.49 3.09
2121 2147 1.409790 TGTGTACGTAAGGCTGTGTGT 59.590 47.619 0.00 0.00 46.39 3.72
2148 2399 0.179200 GCGGCTGTAATTGGTTCGTG 60.179 55.000 0.00 0.00 0.00 4.35
2154 2405 1.948834 TGATCATGCGGCTGTAATTGG 59.051 47.619 0.00 0.00 0.00 3.16
2166 2417 4.542662 AATTAAGTGTCGCTGATCATGC 57.457 40.909 0.00 1.25 0.00 4.06
2169 2420 9.594478 TTAGATTAAATTAAGTGTCGCTGATCA 57.406 29.630 0.00 0.00 0.00 2.92
2223 2474 2.979813 GACAAATGGCTAAACGCACTTG 59.020 45.455 0.00 0.00 41.67 3.16
2235 2883 1.429148 CGTCCGCCTAGACAAATGGC 61.429 60.000 0.00 0.00 42.94 4.40
2264 2912 2.660802 GGCGGGGAACTTTCTCGA 59.339 61.111 0.00 0.00 0.00 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.