>input_sequence_84581
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------ATGAGGCTGTTCTTCAAGCTCTTCGCCGTC
TTGGCCATCATGGCTGCTCTGTCGGCCACAAATGTGCCGTCGCCAGTTGGTGTGTGGGCGAGGACGCCGGGGAGAGCGCC
ACCTTCGCCAACGCCGTCCGCGCTCAGGGGTCGCGTGAAGCCGATTAATCCCGCGCCACAGCCTCCGCCACCAGCGGAAA
TGGGTAGAGTGCGGCCATTGTGTTCACCGCCTCCGCGACCATCACCAAATCACCAGCGAAGCGTCGGCTCTACGCACTTT
CCTCCACCACCATTACGGTGCCACTAG-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------
>chr1A_1_TraesCS1A01G179300
TCCTACTAGCAACGTCGGTCACTTCAAAGGCCATAGAGGAAGGCCGAGCTCACTCCTGCTACACGCCACCGGCGCCAGCT
CCGGCGTCTTCTGGCCAACGTGGCCAAAGCCGCCAAACCCCAACAGCGCCACTGGGACCTCTTGGTCTGAGATCACCGCT
CGGAGCTCCGCCCCCGCCAGAATCAGCGCCGCACCGTCACTACCGGAGGGCGGCGCCACTCGAACCACCACCTCCGCCTC
CGCCACCACCACTCTCCCCGTCGCCAGCCCACCACCGCAACGATCTTAATTAGCAGTAGTATCACATGGGTGCAGCACTC
CCACTTCCCCGCATTACCAGGATCACCACAGATCTGCAG-------TTTGGAGTTTACTTTCAGTCTTAGCCAATCTTCA
ATCAGCAATGTGACGATATGAATTTTTCAGTTCCCTTTGATTCGTGAGAAATTTTCCCAGCACGTGTTGATATATATCGA
ACTGTTCCATGTGAATTCTTTGACACTTATCTCTCTCCAAGTGTTGTCAGGAAGAAATCTTTGGATGTCTACAGAGCTCA
GTCGCTGGTTGCATTGACAAACAAGCCATGTGCGCCATCTAATAAGACTGATCGTAACGAGAGTATCATAAACGGTATCA
TGCATCCTAACTAGATTTTTTAGATAATGTGACATACAATTAAATGAGGAAAGAAAGAGTGTAGTATCATATCATGATAC
CGTATCATATTAAATATTGTATTACTTTGTGTCATGCATAACAATTAATAAGACAACCTAAGATACAACTTATGATACTA
TACATTACGAATGTAGTATCATATACTAATATCATATGCATGATACTAGTATATAATATTCCCCATTACAACCAGCTTAA
CAAAGCCACGCGCCCCAAGATTTCCCAAATAAATGCAAATTCGTCAACCACCCTAGGTTTTCAG---TATAAGTTCAGAT
CATCTCTGTAAGAGTAGCAATGTTCATTTCCTTTTTCTCTTGCGTCCAAGATGAGGCTGTTCTTCAAGCTCTTCGCCGTC
TTGGCCATCATGGCTGCTCTGTCGGCCACAAATGTGCCGTCGCCAGTTGGTGTGTGGGCGAGGACGCCGGGGAGAGCGCC
ACCTTCGCCAACGCCGTCCGCGCTCAGGGGTCGCGTGAAGCCGATTAATCCCGCGCCACAGCCTCCGCCACCAGCGGAAA
TGGGTAGAGTGCGGCCATTGTGTTCACCGCCTCCGCGACCATCACCAAATCACCAGCGAAGCGTCGGCTCTACGCACTTT
CCTCCACCACCATTACGGTGCCACTAGATCTATGTTTCGACTTAATCTTGATCTGTAAAGATCATGTTATTGGTTCTCTT
TACCAAGAACACTTCTGTGTAACGCTTGTGTAAACATCGTGTTGTGAAACATGCTGAGATTCATGTTTTACCTTTCCTAT
TATCTTCACAAATACTCCCTCCATTCATTGTTATAAGATATTCTAGTTTTCTTAAATGACGTGTATATAGACATGTTTTA
GTGTATTAGTTTACTCATTTATGTCTGTATCTAGTCTATAATAAAATATTCAAAAGGTGTTATAATAGTGATAAGAATGA
ACGGAAATAGTACATTGTAATCGTATGTTTATGTTTAGAAAAAT---------------GTCTACGTCTGGTATGCTTAC
GACAGTAGACACCTGTGTTTCTGAAATTTGACTTAACACATGACGTGCATTGTTTTTACGACAGTAGACGGTACGCACAG
TAGACACCCGTGTGTCCGAAATTTGACTTAACACATGATGTGCATTGTTTCTACGATAGTAGACACTCGTATATCCGAAA
TTTGACTTAACACATGACTTAACACATGATAGATTGTAATTGAATGTTTTTCACGTGCAAGGACTAAATTTAAGATAAAA
ACTCATTTGCAGATCTAATCTATGTAGTACTACCTTCGTCTGGGTTTAAAAAGCCCAAGAGCGAAGACTCTAATACCAAG
ATAGTTTATTAACTAGATCATGGATGACGCGCGTTGCTGCGTTCATCCATTTCTTCAATATAATGATAGGAATTATGTAA
ACATGTGGACACATAAAAGATGGATCTATACTACTATTAAACAAGCAAATATATTCATTGCTAAGTA-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------CACACAGCCTTACGTACACACAACAACA
CGAACCAATTACAGCCGCATGATCAGCGACACTTAATTTAATCTAACCATTAAAATTATATTAACCCACGTCACAAGTGC
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------GTT
TAGCCATTTGTCTAGGCGGACGAAAACTCTGTCGAGAAAGTTCCCCGCCCCGCATCCCGTTCGT
>chr1B_1
TCCTACTAGCAACGTCGGTCACTACGAAGGCCATAGAGGAAGGCCGAGCTCACTCCTCCTACACGCCACCGGCGCCAGCT
CCGCCGTCTTCTGGCCAACGTGGCCAAAGCCGCCAAACCCCAACAGCGCCACTGGGACCTCTTGGTCTGAGATCACCGCT
CGGAGCTCCGCCCCCACCAGAATCAGCGCCGCACCGTCGGTACCGGAGGGCGGCGCCACTCGAACCGCCACCTCCT----
--CCACCACCACTCTCGCCATCGTCAGCCCACCAC--------TCTTAATTAGCAGTAGA--CACGTGGTTGTAGCCCTC
CCACTTCCCCGCATTATCAAGATCGCCACAGATCTGCACTTTGGACTTTGGAGTTTACTGTCAGTCTTAGCCAATCTTCA
ATCAGCAATGTGACAATATGAATTTTTTAGTTCCCTTTGATCCGTGAGAATTTTTGCCAGCACGTGTTGATAT----CGA
ACTGTTCCATGTGAATTCTTTGACACTTATCTTTCTCGAAGTGTTGTCAGCAAGAAATCTTTGGATGTCTACAGAGCTCA
GTCGCTGGTTGCATTGACAAACAAGCCATGTGCGCCCTCTAATAGCAG--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----GCCATGCGCCCCAAGATTTCCCAAATAAATGCAAACCTGTCAACCACCCCAGATTTTTACTACTATATGTTCAGAT
CATCACTGTGAGAGCAGCAGTGTTCATTTCCTTTTTCTCTTGCGTCCAAGATGAGGCTGTTCTTCAGGCTCTTCGCCGTC
TTAGCCATCATGGCTGCTCTGTCGGCTACAAATGTGCCGTCGCCAGTTGGTGTGTGGGCGAGGACGCCGGGGAGAGCGCC
ACCTTCGCCGACGCCGTCCGCGCTCAGGGGCCGTGTGAAGCCGATTAATCCCGCGCCACAGCCTCCGCCACCAGCGGAGA
TGGGTAGAGTGCGACCATTGCGTTCACCGCCTCCGCGACCATCACCAAATCACCAGGGAAGCGTCGGCTCTACAAACTTT
CCTCCACCACCATTACGGTGCCACTAGATCTATGTTTCGACTTAATCTTGATCTGTAAAGATCATGTTATTGGTTCTCTT
TACCAAGAACGCTTCCGTGTAACGCTTGTGTAAACACCGTGTTGTGAAACATGCTGAGATTCATGCTTTACCTTTTCTAC
TATCTTCACAAGTACTCCCTCCGTTCATTACTATTAGATGTTCTATTTTTTTTAAATGGGATATATGTAGACGCGTTTTA
TTGTGTTTGTTCACTCATTTCTGTCCATATCTAGTCTATATTGAACGATCCAAAACGTCTTATAACAGTGATAAGAGTGA
AAGGA---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------
>chr1D_287
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------TAGTTACCAGTAGTATCACGTGGTTGTAGCCCTC
CCACTTCCCCGCATTACCAGGATCACCACAGATCTGCAG-------TTTGGAGTTTACTTTCAGTCTTAGCCAATCTTCA
ATCAGCAATGTGACGATATGAATTTTTTAGTTCCCTTTGATCCGTGAGAATTTTACCCAGCACGTGTTGATATATATCGA
ACTGTTCCATGTGAATTCTTTGACACTTATCTTTCTCGAAGTGTTGTCAGGAAGAAATCTTTGGATGTCTACAGAGCTCA
GTCGCTGGTTGCATTGACAAACAAGCCATGTGCGCCATCTAATAA-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
CAAAGCCACGCGCCCCAAGATTTCCCAAATAAATGCAAATCCGTCAACCACCCCAGGTTTTCAG---TATAAGTTCAGAT
CATCTCTGTAAGAGCAGCAATGTTCATTTCCTTTTTCTCTTGCGTCCAAGATGAGGCTGTTCTTCAAGCTCTTCGCCGTC
TTGGCCATCATGGCTGCTCTGTCGGCTACAAATGTGCTGTCGCCAGTTGGTGTGTGGGCGAGGACGCCAGGGAGAGCGCC
ACCTTCGCCGACGCCGTCCGCGCTCAGGGGCCGCGTGAAGCCGATTAATCCCGCGCCACAGCCTCCGCCACCAGCGGAGA
TGGGTAGAGTGCGGCCATTGCGTTCACCGCCTCCGCGACCATCACCAAATCACCAGCGAAGCGTCGGCTCTACGCACTTT
CCTCCACCACCATTAAGGTGCTACTAGATCTATGTTTCGACTTAATCTTGATCTGTAAAGATCATGTTATTGGTTCTCTT
TACCAAGAACGCTTCTGTGTAACGCTTGTGTAAACACCGTGTTGTGAAACATGCTGAGATTCTTGCTTTACCTTTTCTAT
TATCTTCACAAATACTCCCTCCATTCATTGTTATAAGATGTTCTAGTTTTCTTGAATGACAGACGTA--------TTTTA
GTGTGTTTGTTTACTCATTTCTATCTATATCTAGTCTATATTAAAATATTCAAAACGTCTTACAATAGTGGTAAGGCTGA
ACGAAGAGAGTACATTGTAATCGTATGTTTATGTTTAGAAAAATAAACTGAACATGTTAGTCTACGTCCGGTACGCCTAC
GACAGTAGACA---------------------------------------------------------------------
-------CCGTGTGTCTGAAATTTGACTTCACACATGA------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------
>chr5A_2079
ATT-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------TATACTATCATTAAACAAGCAAATATATTCATTACTAAGTGCACACATCCTTAT
GTACACACAACAACACGAATCAATTACAGCCTCACGATCAGCGACACTTAATTTAATCTAACCGTTAAAATTATATTAAC
CCACGTCAAAAGTGTGTTTAGCCATTATCTAGGCGGACGAGAACTCTGTCGAGAAAGTTCCCCGCCCCGCATCCGTTCGT
GTATCTATATCTATACTACTATTAAACAAGTAAACATATTCATCGCTAAATGCACACAGCCTTACGTACACACAACAATA
CGAATCAATTACAGCCTCACGATCAGCGACACTTAATTTAATCTAACCGTTAAAATTATATTAACCCACGTCAAAAGTGC
ATTTAACCATTTGTCTAGGCGGACGAAAACTCTGCCGAGAAAGTTCCCCGCCCCACATCCCGTTCATGTATCCTATAAAC
TAGGAAACAAACACCGCGAGAATAAATAAGACGTTTGAAAAAGAGAAAGAAAATAACTACCATGCATGCGGAGGAGCAAT
CGGTGGAAACTTACCACGCGGGAGAACAGGGTCGCATGCATCAGGTAATTATTGTGCTCCCGCTAATCAAGGTAGAAAAC
AAAGAATCTATACTACTATTAAACAAGCAAACATATTCATCACTAAGTGCACACAGCCTTATGTACACACAACAACACGA
ATCAATTACAGCCTCACGATCAGCAACACTTAATTTAATTTAATCGTTAAAATTATATTAACTCACGTCAAAAGTGTGTT
TAACCATTTGTCTAGGCGGACGAAAACTCTGCCGAGAAAGTTCCCCGCCCCACATCCCGTTC--
>SNPs
-----------------------S-S-------------------------------S----------------------
---S----------------------------------------------------------------------------
---------------S----------------------SS--------------------------S--------SSSSS
SS--------------S--S---S-----------SSSSSSSS----------------------S---S--S---S---
--------------------------------------------------------------------------------
---------------------------S-------------S--------S-----------------------------
--------------------------------S----S------------------------------------------
---------------------------------------------S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
----------------------------------------S------------S--------------------------
--------------S-----------------------------------------------------------------
--------------------------S-----------------------------------------------------
---------S--------------------S-----------------------------------------------S-
--------------------S-----------------------------------------------------------
--------------------------------------------------------------------------------
----------S-------------------------S----------------------------S---------S----
---------------------------------------S--------------------S-S---------SS------
----S--S------------S-----S-------------S--------------S--S-----------------S---
-----S-S------------------------------------------------------------S----S--S---
-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS---------S------------S--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSS-------SS------------------------S------S-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------S-
----S-----------S--S----------------------------S------------------------S------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--S----------------------------S-------------------S----------SS
>forward_317
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------AGTATCACATGGGTGCAGCA---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------
>reverse_1971
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------AAGCCCAAGAGCGAAGACTC----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------
