Multiple sequence alignment - TraesCS1A01G176800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G176800 chr1A 100.000 2804 0 0 1 2804 319076926 319079729 0.000000e+00 5179.0
1 TraesCS1A01G176800 chr1D 94.322 1673 67 20 457 2118 230676123 230674468 0.000000e+00 2538.0
2 TraesCS1A01G176800 chr1D 83.421 573 52 27 2223 2770 230674288 230673734 2.510000e-135 492.0
3 TraesCS1A01G176800 chr1D 97.059 34 1 0 2216 2249 230674333 230674300 1.080000e-04 58.4
4 TraesCS1A01G176800 chr1B 94.408 1520 36 19 620 2114 365689085 365690580 0.000000e+00 2290.0
5 TraesCS1A01G176800 chr1B 82.586 580 56 28 2216 2775 365690756 365691310 1.180000e-128 470.0
6 TraesCS1A01G176800 chr1B 82.812 256 23 7 33 288 365675367 365675601 2.830000e-50 209.0
7 TraesCS1A01G176800 chr1B 97.059 34 1 0 2216 2249 365690718 365690751 1.080000e-04 58.4
8 TraesCS1A01G176800 chr7B 77.814 622 112 21 1097 1714 56924264 56924863 7.380000e-96 361.0
9 TraesCS1A01G176800 chr5B 81.395 258 41 7 72 327 241402190 241402442 1.320000e-48 204.0
10 TraesCS1A01G176800 chr3D 79.134 254 47 6 68 319 33382429 33382678 1.340000e-38 171.0
11 TraesCS1A01G176800 chr7A 78.486 251 39 7 78 327 569396091 569396327 1.740000e-32 150.0
12 TraesCS1A01G176800 chr6D 79.710 138 24 3 127 264 464117265 464117398 2.300000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G176800 chr1A 319076926 319079729 2803 False 5179.000000 5179 100.000000 1 2804 1 chr1A.!!$F1 2803
1 TraesCS1A01G176800 chr1D 230673734 230676123 2389 True 1029.466667 2538 91.600667 457 2770 3 chr1D.!!$R1 2313
2 TraesCS1A01G176800 chr1B 365689085 365691310 2225 False 939.466667 2290 91.351000 620 2775 3 chr1B.!!$F2 2155
3 TraesCS1A01G176800 chr7B 56924264 56924863 599 False 361.000000 361 77.814000 1097 1714 1 chr7B.!!$F1 617

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
190 191 0.171903 AGCGAGCATGGCAAATTCAC 59.828 50.0 0.0 0.0 44.88 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2174 2237 0.03759 CAACCCTGAATTCGGGACCA 59.962 55.0 31.4 0.0 45.36 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.392228 TGAGCAGGTTCCAGCGAT 58.608 55.556 0.84 0.00 35.48 4.58
18 19 1.219124 TGAGCAGGTTCCAGCGATC 59.781 57.895 0.84 0.00 35.48 3.69
19 20 1.880340 GAGCAGGTTCCAGCGATCG 60.880 63.158 11.69 11.69 35.48 3.69
20 21 2.125512 GCAGGTTCCAGCGATCGT 60.126 61.111 17.81 0.26 0.00 3.73
21 22 1.741770 GCAGGTTCCAGCGATCGTT 60.742 57.895 17.81 8.05 0.00 3.85
22 23 1.696832 GCAGGTTCCAGCGATCGTTC 61.697 60.000 17.81 0.13 0.00 3.95
32 33 1.840061 CGATCGTTCGCTCATTCGG 59.160 57.895 7.03 0.00 38.75 4.30
33 34 0.591488 CGATCGTTCGCTCATTCGGA 60.591 55.000 7.03 0.00 38.75 4.55
34 35 0.847035 GATCGTTCGCTCATTCGGAC 59.153 55.000 0.00 0.00 34.74 4.79
36 37 4.470876 GTTCGCTCATTCGGACGA 57.529 55.556 0.00 0.00 0.00 4.20
37 38 1.989163 GTTCGCTCATTCGGACGAC 59.011 57.895 0.00 0.00 33.69 4.34
38 39 1.153901 TTCGCTCATTCGGACGACC 60.154 57.895 0.00 0.00 33.69 4.79
39 40 2.552585 TTCGCTCATTCGGACGACCC 62.553 60.000 0.00 0.00 33.69 4.46
40 41 2.202892 GCTCATTCGGACGACCCC 60.203 66.667 0.00 0.00 0.00 4.95
41 42 2.722201 GCTCATTCGGACGACCCCT 61.722 63.158 0.00 0.00 0.00 4.79
42 43 1.437986 CTCATTCGGACGACCCCTC 59.562 63.158 0.00 0.00 0.00 4.30
43 44 2.017559 CTCATTCGGACGACCCCTCC 62.018 65.000 0.00 0.00 0.00 4.30
44 45 2.058595 CATTCGGACGACCCCTCCT 61.059 63.158 0.00 0.00 0.00 3.69
45 46 2.058595 ATTCGGACGACCCCTCCTG 61.059 63.158 0.00 0.00 0.00 3.86
46 47 2.509931 ATTCGGACGACCCCTCCTGA 62.510 60.000 0.00 0.00 0.00 3.86
47 48 3.141488 CGGACGACCCCTCCTGAG 61.141 72.222 0.00 0.00 0.00 3.35
48 49 2.037527 GGACGACCCCTCCTGAGT 59.962 66.667 0.00 0.00 0.00 3.41
49 50 2.352032 GGACGACCCCTCCTGAGTG 61.352 68.421 0.00 0.00 0.00 3.51
50 51 1.606889 GACGACCCCTCCTGAGTGT 60.607 63.158 0.00 0.00 0.00 3.55
51 52 1.878656 GACGACCCCTCCTGAGTGTG 61.879 65.000 0.00 0.00 0.00 3.82
52 53 2.665603 GACCCCTCCTGAGTGTGC 59.334 66.667 0.00 0.00 0.00 4.57
53 54 3.302347 GACCCCTCCTGAGTGTGCG 62.302 68.421 0.00 0.00 0.00 5.34
54 55 4.087892 CCCCTCCTGAGTGTGCGG 62.088 72.222 0.00 0.00 0.00 5.69
55 56 3.314331 CCCTCCTGAGTGTGCGGT 61.314 66.667 0.00 0.00 0.00 5.68
56 57 2.743718 CCTCCTGAGTGTGCGGTT 59.256 61.111 0.00 0.00 0.00 4.44
57 58 1.541310 CCCTCCTGAGTGTGCGGTTA 61.541 60.000 0.00 0.00 0.00 2.85
58 59 0.537188 CCTCCTGAGTGTGCGGTTAT 59.463 55.000 0.00 0.00 0.00 1.89
59 60 1.645034 CTCCTGAGTGTGCGGTTATG 58.355 55.000 0.00 0.00 0.00 1.90
60 61 0.391130 TCCTGAGTGTGCGGTTATGC 60.391 55.000 0.00 0.00 0.00 3.14
61 62 1.695893 CCTGAGTGTGCGGTTATGCG 61.696 60.000 0.00 0.00 37.81 4.73
62 63 0.735978 CTGAGTGTGCGGTTATGCGA 60.736 55.000 0.00 0.00 37.81 5.10
63 64 0.735978 TGAGTGTGCGGTTATGCGAG 60.736 55.000 0.00 0.00 37.81 5.03
64 65 0.736325 GAGTGTGCGGTTATGCGAGT 60.736 55.000 0.00 0.00 37.81 4.18
65 66 0.736325 AGTGTGCGGTTATGCGAGTC 60.736 55.000 0.00 0.00 37.81 3.36
66 67 0.736325 GTGTGCGGTTATGCGAGTCT 60.736 55.000 0.00 0.00 37.81 3.24
67 68 0.812549 TGTGCGGTTATGCGAGTCTA 59.187 50.000 0.00 0.00 37.81 2.59
68 69 1.407618 TGTGCGGTTATGCGAGTCTAT 59.592 47.619 0.00 0.00 37.81 1.98
69 70 1.787155 GTGCGGTTATGCGAGTCTATG 59.213 52.381 0.00 0.00 37.81 2.23
70 71 1.679153 TGCGGTTATGCGAGTCTATGA 59.321 47.619 0.00 0.00 37.81 2.15
71 72 2.100087 TGCGGTTATGCGAGTCTATGAA 59.900 45.455 0.00 0.00 37.81 2.57
72 73 3.120792 GCGGTTATGCGAGTCTATGAAA 58.879 45.455 0.00 0.00 0.00 2.69
73 74 3.741344 GCGGTTATGCGAGTCTATGAAAT 59.259 43.478 0.00 0.00 0.00 2.17
74 75 4.921515 GCGGTTATGCGAGTCTATGAAATA 59.078 41.667 0.00 0.00 0.00 1.40
75 76 5.404366 GCGGTTATGCGAGTCTATGAAATAA 59.596 40.000 0.00 0.00 0.00 1.40
76 77 6.073980 GCGGTTATGCGAGTCTATGAAATAAA 60.074 38.462 0.00 0.00 0.00 1.40
77 78 7.502339 CGGTTATGCGAGTCTATGAAATAAAG 58.498 38.462 0.00 0.00 0.00 1.85
78 79 7.359264 CGGTTATGCGAGTCTATGAAATAAAGG 60.359 40.741 0.00 0.00 0.00 3.11
79 80 7.656137 GGTTATGCGAGTCTATGAAATAAAGGA 59.344 37.037 0.00 0.00 0.00 3.36
80 81 8.488764 GTTATGCGAGTCTATGAAATAAAGGAC 58.511 37.037 0.00 0.00 0.00 3.85
81 82 6.222038 TGCGAGTCTATGAAATAAAGGACT 57.778 37.500 0.00 0.00 35.37 3.85
82 83 6.640518 TGCGAGTCTATGAAATAAAGGACTT 58.359 36.000 0.00 0.00 33.56 3.01
83 84 6.757010 TGCGAGTCTATGAAATAAAGGACTTC 59.243 38.462 0.00 0.00 33.56 3.01
84 85 6.757010 GCGAGTCTATGAAATAAAGGACTTCA 59.243 38.462 0.00 0.00 33.56 3.02
85 86 7.254151 GCGAGTCTATGAAATAAAGGACTTCAC 60.254 40.741 0.00 0.00 33.56 3.18
86 87 7.976734 CGAGTCTATGAAATAAAGGACTTCACT 59.023 37.037 0.00 0.00 33.56 3.41
89 90 9.871238 GTCTATGAAATAAAGGACTTCACTACA 57.129 33.333 0.00 0.00 32.19 2.74
94 95 9.793259 TGAAATAAAGGACTTCACTACAAATCT 57.207 29.630 0.00 0.00 0.00 2.40
96 97 9.793259 AAATAAAGGACTTCACTACAAATCTGA 57.207 29.630 0.00 0.00 0.00 3.27
97 98 8.779354 ATAAAGGACTTCACTACAAATCTGAC 57.221 34.615 0.00 0.00 0.00 3.51
98 99 5.808366 AGGACTTCACTACAAATCTGACA 57.192 39.130 0.00 0.00 0.00 3.58
99 100 6.365970 AGGACTTCACTACAAATCTGACAT 57.634 37.500 0.00 0.00 0.00 3.06
100 101 6.402222 AGGACTTCACTACAAATCTGACATC 58.598 40.000 0.00 0.00 0.00 3.06
101 102 6.014242 AGGACTTCACTACAAATCTGACATCA 60.014 38.462 0.00 0.00 0.00 3.07
102 103 6.312426 GGACTTCACTACAAATCTGACATCAG 59.688 42.308 2.24 2.24 45.08 2.90
131 132 8.641499 TTTTACCATGTGACTCAAACATTTTC 57.359 30.769 0.00 0.00 36.10 2.29
132 133 5.200368 ACCATGTGACTCAAACATTTTCC 57.800 39.130 0.00 0.00 36.10 3.13
133 134 4.648762 ACCATGTGACTCAAACATTTTCCA 59.351 37.500 0.00 0.00 36.10 3.53
134 135 5.305128 ACCATGTGACTCAAACATTTTCCAT 59.695 36.000 0.00 0.00 36.10 3.41
135 136 5.636121 CCATGTGACTCAAACATTTTCCATG 59.364 40.000 0.00 0.00 36.10 3.66
136 137 6.448852 CATGTGACTCAAACATTTTCCATGA 58.551 36.000 0.00 0.00 36.10 3.07
137 138 5.830912 TGTGACTCAAACATTTTCCATGAC 58.169 37.500 0.00 0.00 0.00 3.06
138 139 5.359292 TGTGACTCAAACATTTTCCATGACA 59.641 36.000 0.00 0.00 0.00 3.58
139 140 6.127507 TGTGACTCAAACATTTTCCATGACAA 60.128 34.615 0.00 0.00 0.00 3.18
140 141 6.756074 GTGACTCAAACATTTTCCATGACAAA 59.244 34.615 0.00 0.00 0.00 2.83
141 142 7.439056 GTGACTCAAACATTTTCCATGACAAAT 59.561 33.333 0.00 0.00 0.00 2.32
142 143 7.986320 TGACTCAAACATTTTCCATGACAAATT 59.014 29.630 0.00 0.00 0.00 1.82
143 144 9.474920 GACTCAAACATTTTCCATGACAAATTA 57.525 29.630 0.00 0.00 0.00 1.40
173 174 7.435068 TTTGAGGATGACAAGTTTAGTTAGC 57.565 36.000 0.00 0.00 0.00 3.09
174 175 5.168569 TGAGGATGACAAGTTTAGTTAGCG 58.831 41.667 0.00 0.00 0.00 4.26
175 176 5.047590 TGAGGATGACAAGTTTAGTTAGCGA 60.048 40.000 0.00 0.00 0.00 4.93
176 177 5.411781 AGGATGACAAGTTTAGTTAGCGAG 58.588 41.667 0.00 0.00 0.00 5.03
177 178 4.033014 GGATGACAAGTTTAGTTAGCGAGC 59.967 45.833 0.00 0.00 0.00 5.03
178 179 3.985008 TGACAAGTTTAGTTAGCGAGCA 58.015 40.909 0.00 0.00 0.00 4.26
179 180 4.566004 TGACAAGTTTAGTTAGCGAGCAT 58.434 39.130 0.00 0.00 0.00 3.79
180 181 4.388773 TGACAAGTTTAGTTAGCGAGCATG 59.611 41.667 0.00 0.00 0.00 4.06
181 182 3.684788 ACAAGTTTAGTTAGCGAGCATGG 59.315 43.478 0.00 0.00 0.00 3.66
182 183 2.280628 AGTTTAGTTAGCGAGCATGGC 58.719 47.619 0.00 0.00 41.64 4.40
183 184 2.006888 GTTTAGTTAGCGAGCATGGCA 58.993 47.619 0.00 0.00 44.88 4.92
184 185 2.394930 TTAGTTAGCGAGCATGGCAA 57.605 45.000 0.00 0.00 44.88 4.52
185 186 2.394930 TAGTTAGCGAGCATGGCAAA 57.605 45.000 0.00 0.00 44.88 3.68
186 187 1.755179 AGTTAGCGAGCATGGCAAAT 58.245 45.000 0.00 0.00 44.88 2.32
187 188 2.094675 AGTTAGCGAGCATGGCAAATT 58.905 42.857 0.00 0.00 44.88 1.82
188 189 2.098117 AGTTAGCGAGCATGGCAAATTC 59.902 45.455 0.00 0.00 44.88 2.17
189 190 1.748950 TAGCGAGCATGGCAAATTCA 58.251 45.000 0.00 0.00 44.88 2.57
190 191 0.171903 AGCGAGCATGGCAAATTCAC 59.828 50.000 0.00 0.00 44.88 3.18
191 192 0.803380 GCGAGCATGGCAAATTCACC 60.803 55.000 0.00 0.00 40.68 4.02
192 193 0.813184 CGAGCATGGCAAATTCACCT 59.187 50.000 0.00 0.00 0.00 4.00
193 194 1.202222 CGAGCATGGCAAATTCACCTC 60.202 52.381 0.00 0.00 0.00 3.85
194 195 1.820519 GAGCATGGCAAATTCACCTCA 59.179 47.619 0.00 0.00 0.00 3.86
195 196 1.822990 AGCATGGCAAATTCACCTCAG 59.177 47.619 0.00 0.00 0.00 3.35
196 197 1.547372 GCATGGCAAATTCACCTCAGT 59.453 47.619 0.00 0.00 0.00 3.41
197 198 2.028748 GCATGGCAAATTCACCTCAGTT 60.029 45.455 0.00 0.00 0.00 3.16
198 199 3.841643 CATGGCAAATTCACCTCAGTTC 58.158 45.455 0.00 0.00 0.00 3.01
199 200 2.942804 TGGCAAATTCACCTCAGTTCA 58.057 42.857 0.00 0.00 0.00 3.18
200 201 3.499338 TGGCAAATTCACCTCAGTTCAT 58.501 40.909 0.00 0.00 0.00 2.57
201 202 3.896888 TGGCAAATTCACCTCAGTTCATT 59.103 39.130 0.00 0.00 0.00 2.57
202 203 4.344679 TGGCAAATTCACCTCAGTTCATTT 59.655 37.500 0.00 0.00 0.00 2.32
203 204 5.538053 TGGCAAATTCACCTCAGTTCATTTA 59.462 36.000 0.00 0.00 0.00 1.40
204 205 6.211184 TGGCAAATTCACCTCAGTTCATTTAT 59.789 34.615 0.00 0.00 0.00 1.40
205 206 7.099120 GGCAAATTCACCTCAGTTCATTTATT 58.901 34.615 0.00 0.00 0.00 1.40
206 207 7.603784 GGCAAATTCACCTCAGTTCATTTATTT 59.396 33.333 0.00 0.00 0.00 1.40
207 208 8.992073 GCAAATTCACCTCAGTTCATTTATTTT 58.008 29.630 0.00 0.00 0.00 1.82
231 232 9.486497 TTTTTCAGAATATTATTGTGCTTGCAA 57.514 25.926 8.34 0.00 0.00 4.08
232 233 9.486497 TTTTCAGAATATTATTGTGCTTGCAAA 57.514 25.926 0.00 2.35 31.63 3.68
233 234 8.464770 TTCAGAATATTATTGTGCTTGCAAAC 57.535 30.769 0.00 0.00 31.63 2.93
234 235 7.829725 TCAGAATATTATTGTGCTTGCAAACT 58.170 30.769 0.00 0.00 31.63 2.66
235 236 8.955388 TCAGAATATTATTGTGCTTGCAAACTA 58.045 29.630 0.00 0.00 31.63 2.24
236 237 9.571810 CAGAATATTATTGTGCTTGCAAACTAA 57.428 29.630 0.00 0.00 31.63 2.24
252 253 4.701956 AACTAAATTTGCCACCATCTCG 57.298 40.909 0.00 0.00 0.00 4.04
253 254 2.423538 ACTAAATTTGCCACCATCTCGC 59.576 45.455 0.00 0.00 0.00 5.03
254 255 0.532115 AAATTTGCCACCATCTCGCC 59.468 50.000 0.00 0.00 0.00 5.54
255 256 0.611618 AATTTGCCACCATCTCGCCA 60.612 50.000 0.00 0.00 0.00 5.69
256 257 0.611618 ATTTGCCACCATCTCGCCAA 60.612 50.000 0.00 0.00 0.00 4.52
257 258 0.611618 TTTGCCACCATCTCGCCAAT 60.612 50.000 0.00 0.00 0.00 3.16
258 259 0.254462 TTGCCACCATCTCGCCAATA 59.746 50.000 0.00 0.00 0.00 1.90
259 260 0.473755 TGCCACCATCTCGCCAATAT 59.526 50.000 0.00 0.00 0.00 1.28
260 261 1.696884 TGCCACCATCTCGCCAATATA 59.303 47.619 0.00 0.00 0.00 0.86
261 262 2.105649 TGCCACCATCTCGCCAATATAA 59.894 45.455 0.00 0.00 0.00 0.98
262 263 3.244875 TGCCACCATCTCGCCAATATAAT 60.245 43.478 0.00 0.00 0.00 1.28
263 264 3.758554 GCCACCATCTCGCCAATATAATT 59.241 43.478 0.00 0.00 0.00 1.40
264 265 4.218417 GCCACCATCTCGCCAATATAATTT 59.782 41.667 0.00 0.00 0.00 1.82
265 266 5.702865 CCACCATCTCGCCAATATAATTTG 58.297 41.667 0.00 0.00 0.00 2.32
266 267 5.241506 CCACCATCTCGCCAATATAATTTGT 59.758 40.000 0.00 0.00 0.00 2.83
267 268 6.373779 CACCATCTCGCCAATATAATTTGTC 58.626 40.000 0.00 0.00 0.00 3.18
268 269 6.017192 CACCATCTCGCCAATATAATTTGTCA 60.017 38.462 0.00 0.00 0.00 3.58
269 270 6.716628 ACCATCTCGCCAATATAATTTGTCAT 59.283 34.615 0.00 0.00 0.00 3.06
270 271 7.882791 ACCATCTCGCCAATATAATTTGTCATA 59.117 33.333 0.00 0.00 0.00 2.15
271 272 8.729756 CCATCTCGCCAATATAATTTGTCATAA 58.270 33.333 0.00 0.00 0.00 1.90
299 300 9.558396 AAAAATTCAGATTTGTCATGCCTAAAA 57.442 25.926 0.00 0.00 35.69 1.52
300 301 9.558396 AAAATTCAGATTTGTCATGCCTAAAAA 57.442 25.926 0.00 0.00 35.69 1.94
301 302 9.729281 AAATTCAGATTTGTCATGCCTAAAAAT 57.271 25.926 0.00 0.00 34.26 1.82
302 303 8.937634 ATTCAGATTTGTCATGCCTAAAAATC 57.062 30.769 1.86 1.86 37.46 2.17
303 304 7.707624 TCAGATTTGTCATGCCTAAAAATCT 57.292 32.000 5.58 5.58 44.41 2.40
304 305 8.806429 TCAGATTTGTCATGCCTAAAAATCTA 57.194 30.769 9.56 0.38 42.68 1.98
305 306 9.241919 TCAGATTTGTCATGCCTAAAAATCTAA 57.758 29.630 9.56 0.00 42.68 2.10
306 307 9.859427 CAGATTTGTCATGCCTAAAAATCTAAA 57.141 29.630 9.56 0.00 42.68 1.85
308 309 9.860898 GATTTGTCATGCCTAAAAATCTAAAGT 57.139 29.630 2.65 0.00 35.39 2.66
309 310 9.860898 ATTTGTCATGCCTAAAAATCTAAAGTC 57.139 29.630 0.00 0.00 0.00 3.01
310 311 7.994425 TGTCATGCCTAAAAATCTAAAGTCA 57.006 32.000 0.00 0.00 0.00 3.41
311 312 8.044060 TGTCATGCCTAAAAATCTAAAGTCAG 57.956 34.615 0.00 0.00 0.00 3.51
312 313 7.882791 TGTCATGCCTAAAAATCTAAAGTCAGA 59.117 33.333 0.00 0.00 0.00 3.27
313 314 8.897752 GTCATGCCTAAAAATCTAAAGTCAGAT 58.102 33.333 0.00 0.00 36.83 2.90
314 315 9.466497 TCATGCCTAAAAATCTAAAGTCAGATT 57.534 29.630 0.00 0.00 45.17 2.40
327 328 8.770828 TCTAAAGTCAGATTTTTAGTGTTTCCG 58.229 33.333 13.18 0.00 37.84 4.30
328 329 7.562454 AAAGTCAGATTTTTAGTGTTTCCGA 57.438 32.000 0.00 0.00 0.00 4.55
329 330 6.541111 AGTCAGATTTTTAGTGTTTCCGAC 57.459 37.500 0.00 0.00 0.00 4.79
330 331 5.176958 AGTCAGATTTTTAGTGTTTCCGACG 59.823 40.000 0.00 0.00 0.00 5.12
331 332 5.176223 GTCAGATTTTTAGTGTTTCCGACGA 59.824 40.000 0.00 0.00 0.00 4.20
332 333 5.929992 TCAGATTTTTAGTGTTTCCGACGAT 59.070 36.000 0.00 0.00 0.00 3.73
333 334 7.062605 GTCAGATTTTTAGTGTTTCCGACGATA 59.937 37.037 0.00 0.00 0.00 2.92
334 335 7.599621 TCAGATTTTTAGTGTTTCCGACGATAA 59.400 33.333 0.00 0.00 0.00 1.75
335 336 8.225107 CAGATTTTTAGTGTTTCCGACGATAAA 58.775 33.333 0.00 0.00 0.00 1.40
336 337 8.225777 AGATTTTTAGTGTTTCCGACGATAAAC 58.774 33.333 14.92 14.92 36.38 2.01
337 338 6.841443 TTTTAGTGTTTCCGACGATAAACA 57.159 33.333 18.51 18.51 41.86 2.83
338 339 6.456447 TTTAGTGTTTCCGACGATAAACAG 57.544 37.500 21.24 0.00 43.99 3.16
339 340 2.735134 AGTGTTTCCGACGATAAACAGC 59.265 45.455 21.24 16.96 43.99 4.40
340 341 2.735134 GTGTTTCCGACGATAAACAGCT 59.265 45.455 21.24 0.00 43.99 4.24
341 342 3.922240 GTGTTTCCGACGATAAACAGCTA 59.078 43.478 21.24 4.83 43.99 3.32
342 343 3.922240 TGTTTCCGACGATAAACAGCTAC 59.078 43.478 18.51 0.93 39.88 3.58
343 344 4.171754 GTTTCCGACGATAAACAGCTACT 58.828 43.478 16.18 0.00 35.98 2.57
344 345 4.445452 TTCCGACGATAAACAGCTACTT 57.555 40.909 0.00 0.00 0.00 2.24
345 346 4.445452 TCCGACGATAAACAGCTACTTT 57.555 40.909 0.00 0.00 0.00 2.66
346 347 4.418392 TCCGACGATAAACAGCTACTTTC 58.582 43.478 0.00 0.00 0.00 2.62
347 348 4.082625 TCCGACGATAAACAGCTACTTTCA 60.083 41.667 0.00 0.00 0.00 2.69
348 349 4.265556 CCGACGATAAACAGCTACTTTCAG 59.734 45.833 0.00 0.00 0.00 3.02
349 350 4.259451 CGACGATAAACAGCTACTTTCAGC 60.259 45.833 0.00 0.00 42.12 4.26
350 351 3.933332 ACGATAAACAGCTACTTTCAGCC 59.067 43.478 0.00 0.00 42.84 4.85
351 352 3.932710 CGATAAACAGCTACTTTCAGCCA 59.067 43.478 0.00 0.00 42.84 4.75
352 353 4.201724 CGATAAACAGCTACTTTCAGCCAC 60.202 45.833 0.00 0.00 42.84 5.01
353 354 2.938956 AACAGCTACTTTCAGCCACT 57.061 45.000 0.00 0.00 42.84 4.00
354 355 2.175878 ACAGCTACTTTCAGCCACTG 57.824 50.000 0.00 0.00 42.84 3.66
355 356 1.694150 ACAGCTACTTTCAGCCACTGA 59.306 47.619 0.00 0.00 42.84 3.41
356 357 2.104792 ACAGCTACTTTCAGCCACTGAA 59.895 45.455 5.94 5.94 46.93 3.02
365 366 3.648339 TCAGCCACTGAAAATCTTTGC 57.352 42.857 0.00 0.00 37.57 3.68
366 367 3.225104 TCAGCCACTGAAAATCTTTGCT 58.775 40.909 0.00 0.00 37.57 3.91
367 368 3.638160 TCAGCCACTGAAAATCTTTGCTT 59.362 39.130 0.00 0.00 37.57 3.91
368 369 4.099881 TCAGCCACTGAAAATCTTTGCTTT 59.900 37.500 0.00 0.00 37.57 3.51
369 370 4.446719 CAGCCACTGAAAATCTTTGCTTTC 59.553 41.667 0.00 0.00 32.44 2.62
370 371 4.099881 AGCCACTGAAAATCTTTGCTTTCA 59.900 37.500 0.00 0.00 38.81 2.69
371 372 4.810491 GCCACTGAAAATCTTTGCTTTCAA 59.190 37.500 0.00 0.00 40.16 2.69
372 373 5.467735 GCCACTGAAAATCTTTGCTTTCAAT 59.532 36.000 0.00 0.00 40.16 2.57
373 374 6.565247 GCCACTGAAAATCTTTGCTTTCAATG 60.565 38.462 0.37 0.37 40.16 2.82
374 375 6.702723 CCACTGAAAATCTTTGCTTTCAATGA 59.297 34.615 7.37 0.00 39.79 2.57
375 376 7.225145 CCACTGAAAATCTTTGCTTTCAATGAA 59.775 33.333 7.37 0.00 39.79 2.57
376 377 8.273557 CACTGAAAATCTTTGCTTTCAATGAAG 58.726 33.333 0.00 0.00 39.79 3.02
400 401 8.992835 AGCAAAAATATTCTTCAAGATTGACC 57.007 30.769 1.12 0.00 36.83 4.02
401 402 8.810041 AGCAAAAATATTCTTCAAGATTGACCT 58.190 29.630 1.12 0.00 36.83 3.85
402 403 9.428097 GCAAAAATATTCTTCAAGATTGACCTT 57.572 29.630 1.12 0.00 36.83 3.50
409 410 8.868522 ATTCTTCAAGATTGACCTTAACATGA 57.131 30.769 0.00 0.00 36.83 3.07
410 411 7.672983 TCTTCAAGATTGACCTTAACATGAC 57.327 36.000 0.00 0.00 36.83 3.06
411 412 6.655003 TCTTCAAGATTGACCTTAACATGACC 59.345 38.462 0.00 0.00 36.83 4.02
412 413 6.126863 TCAAGATTGACCTTAACATGACCT 57.873 37.500 0.00 0.00 31.01 3.85
413 414 5.939883 TCAAGATTGACCTTAACATGACCTG 59.060 40.000 0.00 0.00 31.01 4.00
414 415 4.848357 AGATTGACCTTAACATGACCTGG 58.152 43.478 0.00 0.00 0.00 4.45
415 416 3.433306 TTGACCTTAACATGACCTGGG 57.567 47.619 0.00 0.00 0.00 4.45
416 417 2.626785 TGACCTTAACATGACCTGGGA 58.373 47.619 0.00 0.00 0.00 4.37
417 418 2.983192 TGACCTTAACATGACCTGGGAA 59.017 45.455 0.00 0.00 0.00 3.97
418 419 3.396276 TGACCTTAACATGACCTGGGAAA 59.604 43.478 0.00 0.00 0.00 3.13
419 420 4.044065 TGACCTTAACATGACCTGGGAAAT 59.956 41.667 0.00 0.00 0.00 2.17
420 421 4.344104 ACCTTAACATGACCTGGGAAATG 58.656 43.478 0.00 1.33 0.00 2.32
421 422 3.701040 CCTTAACATGACCTGGGAAATGG 59.299 47.826 0.00 0.00 0.00 3.16
422 423 2.999185 AACATGACCTGGGAAATGGT 57.001 45.000 0.00 0.00 39.60 3.55
423 424 2.999185 ACATGACCTGGGAAATGGTT 57.001 45.000 0.00 0.00 36.59 3.67
424 425 4.396357 AACATGACCTGGGAAATGGTTA 57.604 40.909 0.00 0.00 36.59 2.85
425 426 4.608170 ACATGACCTGGGAAATGGTTAT 57.392 40.909 0.00 0.00 36.59 1.89
426 427 4.946646 ACATGACCTGGGAAATGGTTATT 58.053 39.130 0.00 0.00 36.59 1.40
427 428 6.086011 ACATGACCTGGGAAATGGTTATTA 57.914 37.500 0.00 0.00 36.59 0.98
428 429 5.891551 ACATGACCTGGGAAATGGTTATTAC 59.108 40.000 0.00 0.00 36.59 1.89
429 430 4.862371 TGACCTGGGAAATGGTTATTACC 58.138 43.478 0.00 0.00 45.26 2.85
453 454 9.256228 ACCAACTCAGATTAAACTACTATCAGA 57.744 33.333 0.00 0.00 0.00 3.27
454 455 9.743057 CCAACTCAGATTAAACTACTATCAGAG 57.257 37.037 0.00 0.00 37.71 3.35
455 456 9.243637 CAACTCAGATTAAACTACTATCAGAGC 57.756 37.037 0.00 0.00 36.16 4.09
459 460 7.561722 TCAGATTAAACTACTATCAGAGCCTGT 59.438 37.037 2.68 0.00 32.61 4.00
472 473 0.473755 AGCCTGTCACATGGTTGTCA 59.526 50.000 0.00 0.00 32.34 3.58
474 475 1.001378 GCCTGTCACATGGTTGTCAAC 60.001 52.381 7.20 7.20 32.34 3.18
489 490 4.747540 TGTCAACAATCATCCGAAGTTG 57.252 40.909 0.00 0.00 40.14 3.16
495 496 3.261897 ACAATCATCCGAAGTTGGAGTCT 59.738 43.478 0.00 0.00 42.45 3.24
497 498 3.594603 TCATCCGAAGTTGGAGTCTTC 57.405 47.619 0.00 0.00 42.45 2.87
519 520 2.720758 CGAGGACGCGCTTTGACAG 61.721 63.158 5.73 0.00 0.00 3.51
532 533 0.179094 TTGACAGTTTGACGAGGCGT 60.179 50.000 0.00 0.00 45.10 5.68
538 539 0.949105 GTTTGACGAGGCGTGACCAT 60.949 55.000 0.00 0.00 41.37 3.55
571 573 1.369091 CCTACACCGAAGCACATGGC 61.369 60.000 0.00 0.00 45.30 4.40
624 626 4.131088 GACTCCCGCGACCACCTC 62.131 72.222 8.23 0.00 0.00 3.85
641 643 0.173481 CTCCTGAGATTTCCACGCGA 59.827 55.000 15.93 0.00 0.00 5.87
644 646 1.413767 CTGAGATTTCCACGCGACGG 61.414 60.000 15.93 13.67 0.00 4.79
735 754 1.574702 GGCGTTACCCAGCTGTCAAC 61.575 60.000 13.81 11.88 0.00 3.18
788 809 4.803426 CTCGCCGTCTCACTGCCC 62.803 72.222 0.00 0.00 0.00 5.36
828 849 1.679898 CCAACCTGTCAGTCCCTCC 59.320 63.158 0.00 0.00 0.00 4.30
829 850 1.679898 CAACCTGTCAGTCCCTCCC 59.320 63.158 0.00 0.00 0.00 4.30
912 933 2.167662 CCCCGTTTGCCATCTTTAGTT 58.832 47.619 0.00 0.00 0.00 2.24
913 934 3.349022 CCCCGTTTGCCATCTTTAGTTA 58.651 45.455 0.00 0.00 0.00 2.24
914 935 3.377172 CCCCGTTTGCCATCTTTAGTTAG 59.623 47.826 0.00 0.00 0.00 2.34
1384 1415 4.790962 AGTACGCGCCCCTCGAGA 62.791 66.667 15.71 0.00 40.54 4.04
1480 1511 3.552384 ACCCCAAGAACGTCGCCA 61.552 61.111 0.00 0.00 0.00 5.69
1545 1576 0.970937 ACCGATTCTCCTGGCTCGAA 60.971 55.000 8.63 3.31 33.07 3.71
1627 1664 3.359523 CTGACGACCCGACCACGA 61.360 66.667 0.00 0.00 42.66 4.35
1748 1785 1.079819 CGGAGAAGGAGAAGCGCAA 60.080 57.895 11.47 0.00 0.00 4.85
1933 1970 1.692749 GTGGTAGGGGAGGCCATGA 60.693 63.158 5.01 0.00 34.52 3.07
2057 2094 0.250234 TGCGCCTATCAGTTCTGCTT 59.750 50.000 4.18 0.00 0.00 3.91
2076 2114 4.060900 GCTTCTCTTGTTCTGATCACACA 58.939 43.478 0.00 0.00 0.00 3.72
2083 2121 5.997129 TCTTGTTCTGATCACACAATGCTTA 59.003 36.000 13.66 0.00 0.00 3.09
2118 2161 0.895100 TTGGCTGGCTGATGTTGGAC 60.895 55.000 2.00 0.00 0.00 4.02
2119 2162 1.001641 GGCTGGCTGATGTTGGACT 60.002 57.895 0.00 0.00 0.00 3.85
2127 2190 3.376546 GGCTGATGTTGGACTGAGAAATC 59.623 47.826 0.00 0.00 0.00 2.17
2132 2195 6.479006 TGATGTTGGACTGAGAAATCTGATT 58.521 36.000 0.00 0.00 0.00 2.57
2138 2201 8.610896 GTTGGACTGAGAAATCTGATTATCTTG 58.389 37.037 2.85 8.36 0.00 3.02
2164 2227 2.223572 GCCCTATTGCTGAAAACGATGG 60.224 50.000 0.00 0.00 0.00 3.51
2165 2228 3.016736 CCCTATTGCTGAAAACGATGGT 58.983 45.455 0.00 0.00 0.00 3.55
2166 2229 3.181497 CCCTATTGCTGAAAACGATGGTG 60.181 47.826 0.00 0.00 0.00 4.17
2167 2230 3.181497 CCTATTGCTGAAAACGATGGTGG 60.181 47.826 0.00 0.00 0.00 4.61
2168 2231 0.958091 TTGCTGAAAACGATGGTGGG 59.042 50.000 0.00 0.00 0.00 4.61
2169 2232 1.212751 GCTGAAAACGATGGTGGGC 59.787 57.895 0.00 0.00 0.00 5.36
2170 2233 1.523154 GCTGAAAACGATGGTGGGCA 61.523 55.000 0.00 0.00 0.00 5.36
2171 2234 0.958091 CTGAAAACGATGGTGGGCAA 59.042 50.000 0.00 0.00 0.00 4.52
2172 2235 1.339610 CTGAAAACGATGGTGGGCAAA 59.660 47.619 0.00 0.00 0.00 3.68
2174 2237 2.366916 TGAAAACGATGGTGGGCAAATT 59.633 40.909 0.00 0.00 0.00 1.82
2175 2238 2.453983 AAACGATGGTGGGCAAATTG 57.546 45.000 0.00 0.00 0.00 2.32
2176 2239 0.607620 AACGATGGTGGGCAAATTGG 59.392 50.000 0.00 0.00 0.00 3.16
2177 2240 0.541764 ACGATGGTGGGCAAATTGGT 60.542 50.000 0.00 0.00 0.00 3.67
2178 2241 0.173255 CGATGGTGGGCAAATTGGTC 59.827 55.000 0.00 0.00 0.00 4.02
2179 2242 0.536724 GATGGTGGGCAAATTGGTCC 59.463 55.000 0.00 0.00 0.00 4.46
2180 2243 0.909133 ATGGTGGGCAAATTGGTCCC 60.909 55.000 0.00 3.21 40.47 4.46
2181 2244 2.645192 GGTGGGCAAATTGGTCCCG 61.645 63.158 0.00 0.00 42.98 5.14
2182 2245 1.605165 GTGGGCAAATTGGTCCCGA 60.605 57.895 0.00 0.00 42.98 5.14
2184 2247 0.252012 TGGGCAAATTGGTCCCGAAT 60.252 50.000 0.00 0.00 42.98 3.34
2185 2248 0.901827 GGGCAAATTGGTCCCGAATT 59.098 50.000 0.00 0.00 0.00 2.17
2197 2260 0.391927 CCCGAATTCAGGGTTGCGTA 60.392 55.000 20.72 0.00 43.89 4.42
2201 2264 2.433436 GAATTCAGGGTTGCGTAGGTT 58.567 47.619 0.00 0.00 0.00 3.50
2202 2265 2.579410 ATTCAGGGTTGCGTAGGTTT 57.421 45.000 0.00 0.00 0.00 3.27
2249 2330 2.031870 GGCTTCTTTGTGTTCCTTGGT 58.968 47.619 0.00 0.00 0.00 3.67
2250 2331 2.223805 GGCTTCTTTGTGTTCCTTGGTG 60.224 50.000 0.00 0.00 0.00 4.17
2253 2334 2.297701 TCTTTGTGTTCCTTGGTGCTC 58.702 47.619 0.00 0.00 0.00 4.26
2254 2335 1.002468 CTTTGTGTTCCTTGGTGCTCG 60.002 52.381 0.00 0.00 0.00 5.03
2256 2337 1.070786 GTGTTCCTTGGTGCTCGGA 59.929 57.895 0.00 0.00 0.00 4.55
2257 2338 0.951040 GTGTTCCTTGGTGCTCGGAG 60.951 60.000 0.00 0.00 0.00 4.63
2258 2339 1.376037 GTTCCTTGGTGCTCGGAGG 60.376 63.158 7.20 0.93 0.00 4.30
2259 2340 3.254024 TTCCTTGGTGCTCGGAGGC 62.254 63.158 7.20 0.00 0.00 4.70
2260 2341 3.710722 CCTTGGTGCTCGGAGGCT 61.711 66.667 7.20 0.00 0.00 4.58
2261 2342 2.435586 CTTGGTGCTCGGAGGCTG 60.436 66.667 7.20 0.00 0.00 4.85
2262 2343 3.965539 CTTGGTGCTCGGAGGCTGG 62.966 68.421 7.20 0.00 0.00 4.85
2265 2346 3.474570 GTGCTCGGAGGCTGGGAT 61.475 66.667 7.20 0.00 0.00 3.85
2266 2347 3.157252 TGCTCGGAGGCTGGGATC 61.157 66.667 7.20 0.00 0.00 3.36
2267 2348 3.934962 GCTCGGAGGCTGGGATCC 61.935 72.222 1.92 1.92 0.00 3.36
2268 2349 2.444706 CTCGGAGGCTGGGATCCA 60.445 66.667 15.23 0.00 35.14 3.41
2305 2426 4.224147 TGGTTCATTTCGGTTCAGGAGATA 59.776 41.667 0.00 0.00 0.00 1.98
2306 2427 5.183228 GGTTCATTTCGGTTCAGGAGATAA 58.817 41.667 0.00 0.00 0.00 1.75
2310 2431 7.553881 TCATTTCGGTTCAGGAGATAAAATC 57.446 36.000 0.00 0.00 0.00 2.17
2333 2454 1.368579 GGCACTGCAGCAAAATGGT 59.631 52.632 15.27 0.00 35.83 3.55
2345 2466 3.627123 AGCAAAATGGTTGGTTTCTTTGC 59.373 39.130 8.82 8.82 45.58 3.68
2360 2481 2.616797 TTTGCGTTCCTGGGCACTGA 62.617 55.000 0.00 0.00 39.20 3.41
2362 2483 1.896660 GCGTTCCTGGGCACTGAAA 60.897 57.895 0.00 0.00 0.00 2.69
2364 2485 0.817634 CGTTCCTGGGCACTGAAACA 60.818 55.000 0.00 0.00 0.00 2.83
2366 2487 1.754226 GTTCCTGGGCACTGAAACAAA 59.246 47.619 0.00 0.00 0.00 2.83
2377 2498 4.479619 CACTGAAACAAAATGGCTAGCTC 58.520 43.478 15.72 5.44 0.00 4.09
2379 2500 3.760684 CTGAAACAAAATGGCTAGCTCCT 59.239 43.478 15.72 0.00 0.00 3.69
2380 2501 4.917385 TGAAACAAAATGGCTAGCTCCTA 58.083 39.130 15.72 0.00 0.00 2.94
2381 2502 5.509498 TGAAACAAAATGGCTAGCTCCTAT 58.491 37.500 15.72 1.73 0.00 2.57
2382 2503 6.658849 TGAAACAAAATGGCTAGCTCCTATA 58.341 36.000 15.72 0.00 0.00 1.31
2400 2523 2.270352 TAGTGTTCCTTGGCACTTGG 57.730 50.000 2.48 0.00 42.61 3.61
2407 2530 1.975407 CTTGGCACTTGGAGGCTGG 60.975 63.158 0.00 0.00 0.00 4.85
2438 2564 4.220382 CCTGGATAGATAACTCTGCAGAGG 59.780 50.000 39.42 24.87 46.13 3.69
2439 2565 3.576118 TGGATAGATAACTCTGCAGAGGC 59.424 47.826 39.42 26.87 46.13 4.70
2440 2566 3.056179 GGATAGATAACTCTGCAGAGGCC 60.056 52.174 39.42 26.24 46.13 5.19
2441 2567 1.871418 AGATAACTCTGCAGAGGCCA 58.129 50.000 39.42 26.65 46.13 5.36
2442 2568 1.761784 AGATAACTCTGCAGAGGCCAG 59.238 52.381 39.42 21.17 46.13 4.85
2454 2580 1.003696 AGAGGCCAGCCACTTCTTTAC 59.996 52.381 12.03 0.00 38.92 2.01
2465 2591 4.504097 GCCACTTCTTTACTGTTTTGCTTG 59.496 41.667 0.00 0.00 0.00 4.01
2480 2606 6.588373 TGTTTTGCTTGAACTAAACAAACTCC 59.412 34.615 0.00 0.00 40.56 3.85
2481 2607 4.911514 TGCTTGAACTAAACAAACTCCC 57.088 40.909 0.00 0.00 0.00 4.30
2521 2649 1.954362 GCGCTGGACCAGACAGAGAT 61.954 60.000 26.25 0.00 37.88 2.75
2532 2660 3.583806 CAGACAGAGATGTGTCCTTGTC 58.416 50.000 6.51 0.00 46.94 3.18
2537 2665 2.233431 AGAGATGTGTCCTTGTCTCTGC 59.767 50.000 3.18 0.00 44.14 4.26
2544 2672 2.634453 TGTCCTTGTCTCTGCAATCTCA 59.366 45.455 0.00 0.00 0.00 3.27
2551 2679 4.644498 TGTCTCTGCAATCTCAAATCACA 58.356 39.130 0.00 0.00 0.00 3.58
2577 2705 7.737869 TGTTAACAATGGAGTACTAGGTTGAA 58.262 34.615 5.64 5.52 0.00 2.69
2609 2738 6.492007 TTCGTTGATCGTTCTAGTTCTACT 57.508 37.500 0.00 0.00 40.80 2.57
2612 2741 7.038048 TCGTTGATCGTTCTAGTTCTACTCTA 58.962 38.462 0.00 0.00 40.80 2.43
2616 2745 7.784037 TGATCGTTCTAGTTCTACTCTAGACT 58.216 38.462 2.70 0.00 42.05 3.24
2629 2758 2.692557 CTCTAGACTCATCAGTGGTGGG 59.307 54.545 0.29 0.29 30.63 4.61
2655 2784 1.961277 CGTGTGGAACTGGAGCACC 60.961 63.158 0.00 0.00 38.04 5.01
2658 2787 1.302832 GTGGAACTGGAGCACCCTG 60.303 63.158 0.00 0.00 39.53 4.45
2661 2790 0.107459 GGAACTGGAGCACCCTGATC 60.107 60.000 0.00 1.18 37.33 2.92
2681 2824 1.672881 CGGCAAGAGAATCCAATGTCC 59.327 52.381 0.00 0.00 33.66 4.02
2696 2839 1.334160 TGTCCGTATGTGACCACTGT 58.666 50.000 1.62 0.00 31.60 3.55
2697 2840 1.271379 TGTCCGTATGTGACCACTGTC 59.729 52.381 1.62 0.00 42.12 3.51
2698 2841 0.892755 TCCGTATGTGACCACTGTCC 59.107 55.000 1.62 0.00 41.01 4.02
2699 2842 0.606096 CCGTATGTGACCACTGTCCA 59.394 55.000 1.62 0.00 41.01 4.02
2700 2843 1.671850 CCGTATGTGACCACTGTCCAC 60.672 57.143 1.62 0.00 41.01 4.02
2701 2844 1.272490 CGTATGTGACCACTGTCCACT 59.728 52.381 1.62 0.00 41.01 4.00
2702 2845 2.688507 GTATGTGACCACTGTCCACTG 58.311 52.381 1.62 0.00 41.01 3.66
2709 2852 1.665916 CACTGTCCACTGCTCACCG 60.666 63.158 0.00 0.00 0.00 4.94
2718 2861 1.665916 CTGCTCACCGGTGTGACAG 60.666 63.158 34.54 31.36 46.40 3.51
2747 2890 4.576463 GGTCACTGATTTTTGGATATCGCT 59.424 41.667 0.00 0.00 0.00 4.93
2758 2901 4.193826 TGGATATCGCTCAGAATTAGCC 57.806 45.455 0.00 0.00 36.60 3.93
2775 2918 1.059913 GCCTACCATCCAGCCTATGT 58.940 55.000 0.00 0.00 0.00 2.29
2776 2919 1.421646 GCCTACCATCCAGCCTATGTT 59.578 52.381 0.00 0.00 0.00 2.71
2777 2920 2.551071 GCCTACCATCCAGCCTATGTTC 60.551 54.545 0.00 0.00 0.00 3.18
2778 2921 2.289072 CCTACCATCCAGCCTATGTTCG 60.289 54.545 0.00 0.00 0.00 3.95
2779 2922 0.469917 ACCATCCAGCCTATGTTCGG 59.530 55.000 0.00 0.00 0.00 4.30
2780 2923 0.469917 CCATCCAGCCTATGTTCGGT 59.530 55.000 0.00 0.00 0.00 4.69
2781 2924 1.691976 CCATCCAGCCTATGTTCGGTA 59.308 52.381 0.00 0.00 0.00 4.02
2782 2925 2.548067 CCATCCAGCCTATGTTCGGTAC 60.548 54.545 0.00 0.00 0.00 3.34
2783 2926 1.855295 TCCAGCCTATGTTCGGTACA 58.145 50.000 0.00 0.00 41.97 2.90
2785 2928 2.102420 TCCAGCCTATGTTCGGTACATG 59.898 50.000 10.11 0.00 46.81 3.21
2786 2929 2.158957 CCAGCCTATGTTCGGTACATGT 60.159 50.000 10.11 2.69 46.81 3.21
2787 2930 3.069016 CCAGCCTATGTTCGGTACATGTA 59.931 47.826 10.11 0.08 46.81 2.29
2788 2931 4.262463 CCAGCCTATGTTCGGTACATGTAT 60.262 45.833 9.18 0.00 46.81 2.29
2789 2932 4.923871 CAGCCTATGTTCGGTACATGTATC 59.076 45.833 9.18 7.54 46.81 2.24
2790 2933 4.833380 AGCCTATGTTCGGTACATGTATCT 59.167 41.667 14.10 0.00 46.81 1.98
2791 2934 5.304614 AGCCTATGTTCGGTACATGTATCTT 59.695 40.000 14.10 2.84 46.81 2.40
2792 2935 5.405571 GCCTATGTTCGGTACATGTATCTTG 59.594 44.000 14.10 0.00 46.81 3.02
2793 2936 5.405571 CCTATGTTCGGTACATGTATCTTGC 59.594 44.000 14.10 4.53 46.81 4.01
2794 2937 3.183754 TGTTCGGTACATGTATCTTGCG 58.816 45.455 14.10 0.00 0.00 4.85
2795 2938 3.184541 GTTCGGTACATGTATCTTGCGT 58.815 45.455 14.10 0.00 0.00 5.24
2796 2939 2.804647 TCGGTACATGTATCTTGCGTG 58.195 47.619 14.10 0.00 0.00 5.34
2797 2940 2.164827 TCGGTACATGTATCTTGCGTGT 59.835 45.455 14.10 0.00 39.20 4.49
2798 2941 2.927477 CGGTACATGTATCTTGCGTGTT 59.073 45.455 14.10 0.00 37.31 3.32
2799 2942 4.106909 CGGTACATGTATCTTGCGTGTTA 58.893 43.478 14.10 0.00 37.31 2.41
2800 2943 4.743151 CGGTACATGTATCTTGCGTGTTAT 59.257 41.667 14.10 0.00 37.31 1.89
2801 2944 5.916320 CGGTACATGTATCTTGCGTGTTATA 59.084 40.000 14.10 0.00 37.31 0.98
2802 2945 6.584942 CGGTACATGTATCTTGCGTGTTATAT 59.415 38.462 14.10 0.00 37.31 0.86
2803 2946 7.115805 CGGTACATGTATCTTGCGTGTTATATT 59.884 37.037 14.10 0.00 37.31 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.219124 GATCGCTGGAACCTGCTCA 59.781 57.895 17.73 7.23 38.49 4.26
1 2 1.880340 CGATCGCTGGAACCTGCTC 60.880 63.158 17.73 10.24 38.49 4.26
2 3 2.172483 AACGATCGCTGGAACCTGCT 62.172 55.000 16.60 3.28 38.49 4.24
3 4 1.696832 GAACGATCGCTGGAACCTGC 61.697 60.000 16.60 11.72 37.50 4.85
4 5 1.413767 CGAACGATCGCTGGAACCTG 61.414 60.000 16.60 0.00 42.96 4.00
5 6 1.153823 CGAACGATCGCTGGAACCT 60.154 57.895 16.60 0.00 42.96 3.50
6 7 3.384927 CGAACGATCGCTGGAACC 58.615 61.111 16.60 0.00 42.96 3.62
15 16 0.847035 GTCCGAATGAGCGAACGATC 59.153 55.000 5.52 5.52 0.00 3.69
16 17 0.866061 CGTCCGAATGAGCGAACGAT 60.866 55.000 0.00 0.00 0.00 3.73
17 18 1.513373 CGTCCGAATGAGCGAACGA 60.513 57.895 0.00 0.00 0.00 3.85
18 19 1.513373 TCGTCCGAATGAGCGAACG 60.513 57.895 0.00 0.00 0.00 3.95
19 20 1.411493 GGTCGTCCGAATGAGCGAAC 61.411 60.000 0.00 0.00 35.08 3.95
20 21 1.153901 GGTCGTCCGAATGAGCGAA 60.154 57.895 0.00 0.00 35.08 4.70
21 22 2.488355 GGTCGTCCGAATGAGCGA 59.512 61.111 0.00 0.00 0.00 4.93
22 23 2.582498 GGGTCGTCCGAATGAGCG 60.582 66.667 0.00 0.00 39.36 5.03
23 24 2.202892 GGGGTCGTCCGAATGAGC 60.203 66.667 0.00 0.00 38.04 4.26
24 25 1.437986 GAGGGGTCGTCCGAATGAG 59.562 63.158 0.00 0.00 36.01 2.90
25 26 2.056223 GGAGGGGTCGTCCGAATGA 61.056 63.158 0.00 0.00 36.01 2.57
26 27 2.058595 AGGAGGGGTCGTCCGAATG 61.059 63.158 0.00 0.00 42.50 2.67
27 28 2.058595 CAGGAGGGGTCGTCCGAAT 61.059 63.158 0.00 0.00 42.50 3.34
28 29 2.678934 CAGGAGGGGTCGTCCGAA 60.679 66.667 0.00 0.00 42.50 4.30
29 30 3.640257 CTCAGGAGGGGTCGTCCGA 62.640 68.421 1.65 0.00 42.50 4.55
30 31 3.141488 CTCAGGAGGGGTCGTCCG 61.141 72.222 1.65 0.00 42.50 4.79
31 32 2.037527 ACTCAGGAGGGGTCGTCC 59.962 66.667 0.83 0.00 38.54 4.79
32 33 1.606889 ACACTCAGGAGGGGTCGTC 60.607 63.158 3.25 0.00 35.76 4.20
33 34 1.908793 CACACTCAGGAGGGGTCGT 60.909 63.158 3.25 0.00 35.76 4.34
34 35 2.973899 CACACTCAGGAGGGGTCG 59.026 66.667 3.25 0.00 35.76 4.79
35 36 2.665603 GCACACTCAGGAGGGGTC 59.334 66.667 3.25 0.00 35.76 4.46
36 37 3.314331 CGCACACTCAGGAGGGGT 61.314 66.667 3.25 0.00 35.76 4.95
37 38 4.087892 CCGCACACTCAGGAGGGG 62.088 72.222 3.25 0.00 35.76 4.79
38 39 1.541310 TAACCGCACACTCAGGAGGG 61.541 60.000 0.00 0.00 37.98 4.30
39 40 0.537188 ATAACCGCACACTCAGGAGG 59.463 55.000 0.83 0.00 0.00 4.30
40 41 1.645034 CATAACCGCACACTCAGGAG 58.355 55.000 0.00 0.00 0.00 3.69
41 42 0.391130 GCATAACCGCACACTCAGGA 60.391 55.000 0.00 0.00 0.00 3.86
42 43 1.695893 CGCATAACCGCACACTCAGG 61.696 60.000 0.00 0.00 0.00 3.86
43 44 0.735978 TCGCATAACCGCACACTCAG 60.736 55.000 0.00 0.00 0.00 3.35
44 45 0.735978 CTCGCATAACCGCACACTCA 60.736 55.000 0.00 0.00 0.00 3.41
45 46 0.736325 ACTCGCATAACCGCACACTC 60.736 55.000 0.00 0.00 0.00 3.51
46 47 0.736325 GACTCGCATAACCGCACACT 60.736 55.000 0.00 0.00 0.00 3.55
47 48 0.736325 AGACTCGCATAACCGCACAC 60.736 55.000 0.00 0.00 0.00 3.82
48 49 0.812549 TAGACTCGCATAACCGCACA 59.187 50.000 0.00 0.00 0.00 4.57
49 50 1.787155 CATAGACTCGCATAACCGCAC 59.213 52.381 0.00 0.00 0.00 5.34
50 51 1.679153 TCATAGACTCGCATAACCGCA 59.321 47.619 0.00 0.00 0.00 5.69
51 52 2.417339 TCATAGACTCGCATAACCGC 57.583 50.000 0.00 0.00 0.00 5.68
52 53 7.359264 CCTTTATTTCATAGACTCGCATAACCG 60.359 40.741 0.00 0.00 0.00 4.44
53 54 7.656137 TCCTTTATTTCATAGACTCGCATAACC 59.344 37.037 0.00 0.00 0.00 2.85
54 55 8.488764 GTCCTTTATTTCATAGACTCGCATAAC 58.511 37.037 0.00 0.00 0.00 1.89
55 56 8.421784 AGTCCTTTATTTCATAGACTCGCATAA 58.578 33.333 0.00 0.00 28.69 1.90
56 57 7.952671 AGTCCTTTATTTCATAGACTCGCATA 58.047 34.615 0.00 0.00 28.69 3.14
57 58 6.821388 AGTCCTTTATTTCATAGACTCGCAT 58.179 36.000 0.00 0.00 28.69 4.73
58 59 6.222038 AGTCCTTTATTTCATAGACTCGCA 57.778 37.500 0.00 0.00 28.69 5.10
59 60 6.757010 TGAAGTCCTTTATTTCATAGACTCGC 59.243 38.462 0.00 0.00 33.62 5.03
60 61 7.976734 AGTGAAGTCCTTTATTTCATAGACTCG 59.023 37.037 0.00 0.00 36.37 4.18
63 64 9.871238 TGTAGTGAAGTCCTTTATTTCATAGAC 57.129 33.333 0.00 0.00 36.37 2.59
68 69 9.793259 AGATTTGTAGTGAAGTCCTTTATTTCA 57.207 29.630 0.00 0.00 31.92 2.69
70 71 9.793259 TCAGATTTGTAGTGAAGTCCTTTATTT 57.207 29.630 0.00 0.00 0.00 1.40
71 72 9.220767 GTCAGATTTGTAGTGAAGTCCTTTATT 57.779 33.333 0.00 0.00 0.00 1.40
72 73 8.375506 TGTCAGATTTGTAGTGAAGTCCTTTAT 58.624 33.333 0.00 0.00 0.00 1.40
73 74 7.732025 TGTCAGATTTGTAGTGAAGTCCTTTA 58.268 34.615 0.00 0.00 0.00 1.85
74 75 6.591935 TGTCAGATTTGTAGTGAAGTCCTTT 58.408 36.000 0.00 0.00 0.00 3.11
75 76 6.174720 TGTCAGATTTGTAGTGAAGTCCTT 57.825 37.500 0.00 0.00 0.00 3.36
76 77 5.808366 TGTCAGATTTGTAGTGAAGTCCT 57.192 39.130 0.00 0.00 0.00 3.85
77 78 6.166279 TGATGTCAGATTTGTAGTGAAGTCC 58.834 40.000 0.00 0.00 0.00 3.85
78 79 7.288317 CTGATGTCAGATTTGTAGTGAAGTC 57.712 40.000 3.96 0.00 46.59 3.01
105 106 9.092876 GAAAATGTTTGAGTCACATGGTAAAAA 57.907 29.630 0.00 0.00 34.97 1.94
106 107 7.708752 GGAAAATGTTTGAGTCACATGGTAAAA 59.291 33.333 0.00 0.00 34.97 1.52
107 108 7.147828 TGGAAAATGTTTGAGTCACATGGTAAA 60.148 33.333 0.00 0.00 34.97 2.01
108 109 6.322456 TGGAAAATGTTTGAGTCACATGGTAA 59.678 34.615 0.00 0.00 34.97 2.85
109 110 5.830457 TGGAAAATGTTTGAGTCACATGGTA 59.170 36.000 0.00 0.00 34.97 3.25
110 111 4.648762 TGGAAAATGTTTGAGTCACATGGT 59.351 37.500 0.00 0.00 34.97 3.55
111 112 5.199024 TGGAAAATGTTTGAGTCACATGG 57.801 39.130 0.00 0.00 34.97 3.66
112 113 6.364165 GTCATGGAAAATGTTTGAGTCACATG 59.636 38.462 0.00 0.24 34.97 3.21
113 114 6.040729 TGTCATGGAAAATGTTTGAGTCACAT 59.959 34.615 0.00 0.00 36.36 3.21
114 115 5.359292 TGTCATGGAAAATGTTTGAGTCACA 59.641 36.000 0.00 0.00 0.00 3.58
115 116 5.830912 TGTCATGGAAAATGTTTGAGTCAC 58.169 37.500 0.00 0.00 0.00 3.67
116 117 6.462552 TTGTCATGGAAAATGTTTGAGTCA 57.537 33.333 0.00 0.00 0.00 3.41
117 118 7.951530 ATTTGTCATGGAAAATGTTTGAGTC 57.048 32.000 5.92 0.00 0.00 3.36
147 148 9.162764 GCTAACTAAACTTGTCATCCTCAAATA 57.837 33.333 0.00 0.00 0.00 1.40
148 149 7.148407 CGCTAACTAAACTTGTCATCCTCAAAT 60.148 37.037 0.00 0.00 0.00 2.32
149 150 6.147164 CGCTAACTAAACTTGTCATCCTCAAA 59.853 38.462 0.00 0.00 0.00 2.69
150 151 5.637810 CGCTAACTAAACTTGTCATCCTCAA 59.362 40.000 0.00 0.00 0.00 3.02
151 152 5.047590 TCGCTAACTAAACTTGTCATCCTCA 60.048 40.000 0.00 0.00 0.00 3.86
152 153 5.408356 TCGCTAACTAAACTTGTCATCCTC 58.592 41.667 0.00 0.00 0.00 3.71
153 154 5.401531 TCGCTAACTAAACTTGTCATCCT 57.598 39.130 0.00 0.00 0.00 3.24
154 155 4.033014 GCTCGCTAACTAAACTTGTCATCC 59.967 45.833 0.00 0.00 0.00 3.51
155 156 4.625742 TGCTCGCTAACTAAACTTGTCATC 59.374 41.667 0.00 0.00 0.00 2.92
156 157 4.566004 TGCTCGCTAACTAAACTTGTCAT 58.434 39.130 0.00 0.00 0.00 3.06
157 158 3.985008 TGCTCGCTAACTAAACTTGTCA 58.015 40.909 0.00 0.00 0.00 3.58
158 159 4.201724 CCATGCTCGCTAACTAAACTTGTC 60.202 45.833 0.00 0.00 0.00 3.18
159 160 3.684788 CCATGCTCGCTAACTAAACTTGT 59.315 43.478 0.00 0.00 0.00 3.16
160 161 3.485877 GCCATGCTCGCTAACTAAACTTG 60.486 47.826 0.00 0.00 0.00 3.16
161 162 2.678336 GCCATGCTCGCTAACTAAACTT 59.322 45.455 0.00 0.00 0.00 2.66
162 163 2.280628 GCCATGCTCGCTAACTAAACT 58.719 47.619 0.00 0.00 0.00 2.66
163 164 2.006888 TGCCATGCTCGCTAACTAAAC 58.993 47.619 0.00 0.00 0.00 2.01
164 165 2.394930 TGCCATGCTCGCTAACTAAA 57.605 45.000 0.00 0.00 0.00 1.85
165 166 2.394930 TTGCCATGCTCGCTAACTAA 57.605 45.000 0.00 0.00 0.00 2.24
166 167 2.394930 TTTGCCATGCTCGCTAACTA 57.605 45.000 0.00 0.00 0.00 2.24
167 168 1.755179 ATTTGCCATGCTCGCTAACT 58.245 45.000 0.00 0.00 0.00 2.24
168 169 2.159393 TGAATTTGCCATGCTCGCTAAC 60.159 45.455 0.00 0.00 0.00 2.34
169 170 2.090760 TGAATTTGCCATGCTCGCTAA 58.909 42.857 0.00 0.00 0.00 3.09
170 171 1.401552 GTGAATTTGCCATGCTCGCTA 59.598 47.619 0.00 0.00 0.00 4.26
171 172 0.171903 GTGAATTTGCCATGCTCGCT 59.828 50.000 0.00 0.00 0.00 4.93
172 173 0.803380 GGTGAATTTGCCATGCTCGC 60.803 55.000 0.00 0.00 0.00 5.03
173 174 0.813184 AGGTGAATTTGCCATGCTCG 59.187 50.000 0.00 0.00 0.00 5.03
174 175 1.820519 TGAGGTGAATTTGCCATGCTC 59.179 47.619 0.00 0.00 0.00 4.26
175 176 1.822990 CTGAGGTGAATTTGCCATGCT 59.177 47.619 0.00 0.00 0.00 3.79
176 177 1.547372 ACTGAGGTGAATTTGCCATGC 59.453 47.619 0.00 0.00 0.00 4.06
177 178 3.256383 TGAACTGAGGTGAATTTGCCATG 59.744 43.478 2.72 0.00 0.00 3.66
178 179 3.499338 TGAACTGAGGTGAATTTGCCAT 58.501 40.909 2.72 0.00 0.00 4.40
179 180 2.942804 TGAACTGAGGTGAATTTGCCA 58.057 42.857 2.72 0.00 0.00 4.92
180 181 4.525912 AATGAACTGAGGTGAATTTGCC 57.474 40.909 0.00 0.00 0.00 4.52
181 182 8.538409 AAATAAATGAACTGAGGTGAATTTGC 57.462 30.769 0.00 0.00 0.00 3.68
205 206 9.486497 TTGCAAGCACAATAATATTCTGAAAAA 57.514 25.926 0.00 0.00 0.00 1.94
206 207 9.486497 TTTGCAAGCACAATAATATTCTGAAAA 57.514 25.926 0.00 0.00 0.00 2.29
207 208 8.924691 GTTTGCAAGCACAATAATATTCTGAAA 58.075 29.630 8.58 0.00 0.00 2.69
208 209 8.306038 AGTTTGCAAGCACAATAATATTCTGAA 58.694 29.630 16.04 0.00 0.00 3.02
209 210 7.829725 AGTTTGCAAGCACAATAATATTCTGA 58.170 30.769 16.04 0.00 0.00 3.27
210 211 9.571810 TTAGTTTGCAAGCACAATAATATTCTG 57.428 29.630 16.04 0.00 0.00 3.02
230 231 4.618227 GCGAGATGGTGGCAAATTTAGTTT 60.618 41.667 0.00 0.00 0.00 2.66
231 232 3.119495 GCGAGATGGTGGCAAATTTAGTT 60.119 43.478 0.00 0.00 0.00 2.24
232 233 2.423538 GCGAGATGGTGGCAAATTTAGT 59.576 45.455 0.00 0.00 0.00 2.24
233 234 2.223572 GGCGAGATGGTGGCAAATTTAG 60.224 50.000 0.00 0.00 0.00 1.85
234 235 1.748493 GGCGAGATGGTGGCAAATTTA 59.252 47.619 0.00 0.00 0.00 1.40
235 236 0.532115 GGCGAGATGGTGGCAAATTT 59.468 50.000 0.00 0.00 0.00 1.82
236 237 0.611618 TGGCGAGATGGTGGCAAATT 60.612 50.000 0.00 0.00 37.75 1.82
237 238 0.611618 TTGGCGAGATGGTGGCAAAT 60.612 50.000 0.00 0.00 46.03 2.32
238 239 1.228398 TTGGCGAGATGGTGGCAAA 60.228 52.632 0.00 0.00 46.03 3.68
239 240 2.433888 TTGGCGAGATGGTGGCAA 59.566 55.556 0.00 0.00 46.71 4.52
240 241 0.473755 ATATTGGCGAGATGGTGGCA 59.526 50.000 0.00 0.00 39.06 4.92
241 242 2.472695 TATATTGGCGAGATGGTGGC 57.527 50.000 0.00 0.00 0.00 5.01
242 243 5.241506 ACAAATTATATTGGCGAGATGGTGG 59.758 40.000 0.00 0.00 34.56 4.61
243 244 6.017192 TGACAAATTATATTGGCGAGATGGTG 60.017 38.462 0.00 0.00 41.42 4.17
244 245 6.061441 TGACAAATTATATTGGCGAGATGGT 58.939 36.000 0.00 0.00 41.42 3.55
245 246 6.558771 TGACAAATTATATTGGCGAGATGG 57.441 37.500 0.00 0.00 41.42 3.51
273 274 9.558396 TTTTAGGCATGACAAATCTGAATTTTT 57.442 25.926 0.00 0.00 32.69 1.94
274 275 9.558396 TTTTTAGGCATGACAAATCTGAATTTT 57.442 25.926 0.00 0.00 32.69 1.82
275 276 9.729281 ATTTTTAGGCATGACAAATCTGAATTT 57.271 25.926 0.00 0.00 35.43 1.82
276 277 9.374838 GATTTTTAGGCATGACAAATCTGAATT 57.625 29.630 13.16 0.00 33.08 2.17
277 278 8.755977 AGATTTTTAGGCATGACAAATCTGAAT 58.244 29.630 19.44 7.36 40.86 2.57
278 279 8.125978 AGATTTTTAGGCATGACAAATCTGAA 57.874 30.769 19.44 3.71 40.86 3.02
279 280 7.707624 AGATTTTTAGGCATGACAAATCTGA 57.292 32.000 19.44 0.00 40.86 3.27
280 281 9.859427 TTTAGATTTTTAGGCATGACAAATCTG 57.141 29.630 25.10 0.00 41.87 2.90
282 283 9.860898 ACTTTAGATTTTTAGGCATGACAAATC 57.139 29.630 12.72 12.72 35.11 2.17
283 284 9.860898 GACTTTAGATTTTTAGGCATGACAAAT 57.139 29.630 0.00 0.00 0.00 2.32
284 285 8.855110 TGACTTTAGATTTTTAGGCATGACAAA 58.145 29.630 0.00 0.00 0.00 2.83
285 286 8.402798 TGACTTTAGATTTTTAGGCATGACAA 57.597 30.769 0.00 0.00 0.00 3.18
286 287 7.882791 TCTGACTTTAGATTTTTAGGCATGACA 59.117 33.333 0.00 0.00 0.00 3.58
287 288 8.268850 TCTGACTTTAGATTTTTAGGCATGAC 57.731 34.615 0.00 0.00 0.00 3.06
288 289 9.466497 AATCTGACTTTAGATTTTTAGGCATGA 57.534 29.630 0.00 0.00 43.08 3.07
301 302 8.770828 CGGAAACACTAAAAATCTGACTTTAGA 58.229 33.333 19.95 0.00 38.14 2.10
302 303 8.770828 TCGGAAACACTAAAAATCTGACTTTAG 58.229 33.333 14.81 14.81 39.81 1.85
303 304 8.553696 GTCGGAAACACTAAAAATCTGACTTTA 58.446 33.333 5.94 0.00 41.19 1.85
304 305 7.415229 GTCGGAAACACTAAAAATCTGACTTT 58.585 34.615 5.94 0.00 41.19 2.66
305 306 6.292703 CGTCGGAAACACTAAAAATCTGACTT 60.293 38.462 10.32 0.00 41.86 3.01
306 307 5.176958 CGTCGGAAACACTAAAAATCTGACT 59.823 40.000 10.32 0.00 41.86 3.41
307 308 5.176223 TCGTCGGAAACACTAAAAATCTGAC 59.824 40.000 0.00 0.00 41.05 3.51
308 309 5.291178 TCGTCGGAAACACTAAAAATCTGA 58.709 37.500 0.00 0.00 0.00 3.27
309 310 5.585500 TCGTCGGAAACACTAAAAATCTG 57.415 39.130 0.00 0.00 0.00 2.90
310 311 7.894376 TTATCGTCGGAAACACTAAAAATCT 57.106 32.000 0.00 0.00 0.00 2.40
311 312 8.011106 TGTTTATCGTCGGAAACACTAAAAATC 58.989 33.333 17.15 0.00 39.88 2.17
312 313 7.863666 TGTTTATCGTCGGAAACACTAAAAAT 58.136 30.769 17.15 0.00 39.88 1.82
313 314 7.244166 TGTTTATCGTCGGAAACACTAAAAA 57.756 32.000 17.15 0.43 39.88 1.94
314 315 6.564499 GCTGTTTATCGTCGGAAACACTAAAA 60.564 38.462 17.15 2.51 39.88 1.52
315 316 5.107375 GCTGTTTATCGTCGGAAACACTAAA 60.107 40.000 17.15 3.02 39.88 1.85
316 317 4.386652 GCTGTTTATCGTCGGAAACACTAA 59.613 41.667 17.15 3.29 39.88 2.24
317 318 3.922240 GCTGTTTATCGTCGGAAACACTA 59.078 43.478 17.15 3.55 39.88 2.74
318 319 2.735134 GCTGTTTATCGTCGGAAACACT 59.265 45.455 17.15 0.00 39.88 3.55
319 320 2.735134 AGCTGTTTATCGTCGGAAACAC 59.265 45.455 17.15 14.56 39.88 3.32
320 321 3.034721 AGCTGTTTATCGTCGGAAACA 57.965 42.857 18.88 18.88 41.90 2.83
321 322 4.171754 AGTAGCTGTTTATCGTCGGAAAC 58.828 43.478 13.52 13.52 36.33 2.78
322 323 4.445452 AGTAGCTGTTTATCGTCGGAAA 57.555 40.909 0.00 0.00 0.00 3.13
323 324 4.445452 AAGTAGCTGTTTATCGTCGGAA 57.555 40.909 0.00 0.00 0.00 4.30
324 325 4.082625 TGAAAGTAGCTGTTTATCGTCGGA 60.083 41.667 0.00 0.00 0.00 4.55
325 326 4.171005 TGAAAGTAGCTGTTTATCGTCGG 58.829 43.478 0.00 0.00 0.00 4.79
326 327 4.259451 GCTGAAAGTAGCTGTTTATCGTCG 60.259 45.833 0.00 0.00 40.52 5.12
327 328 4.033014 GGCTGAAAGTAGCTGTTTATCGTC 59.967 45.833 0.00 0.00 43.22 4.20
328 329 3.933332 GGCTGAAAGTAGCTGTTTATCGT 59.067 43.478 0.00 0.00 43.22 3.73
329 330 3.932710 TGGCTGAAAGTAGCTGTTTATCG 59.067 43.478 0.00 0.00 43.22 2.92
330 331 4.938226 AGTGGCTGAAAGTAGCTGTTTATC 59.062 41.667 0.00 0.00 43.22 1.75
331 332 4.697352 CAGTGGCTGAAAGTAGCTGTTTAT 59.303 41.667 0.00 0.00 43.22 1.40
332 333 4.065088 CAGTGGCTGAAAGTAGCTGTTTA 58.935 43.478 0.00 0.00 43.22 2.01
333 334 2.880890 CAGTGGCTGAAAGTAGCTGTTT 59.119 45.455 0.00 0.00 43.22 2.83
334 335 2.104792 TCAGTGGCTGAAAGTAGCTGTT 59.895 45.455 0.00 0.00 43.22 3.16
335 336 1.694150 TCAGTGGCTGAAAGTAGCTGT 59.306 47.619 0.00 0.00 43.22 4.40
336 337 2.462456 TCAGTGGCTGAAAGTAGCTG 57.538 50.000 0.00 0.00 43.22 4.24
344 345 3.638160 AGCAAAGATTTTCAGTGGCTGAA 59.362 39.130 7.41 7.41 46.93 3.02
345 346 3.225104 AGCAAAGATTTTCAGTGGCTGA 58.775 40.909 0.00 0.00 38.87 4.26
346 347 3.655276 AGCAAAGATTTTCAGTGGCTG 57.345 42.857 0.00 0.00 0.00 4.85
347 348 4.099881 TGAAAGCAAAGATTTTCAGTGGCT 59.900 37.500 0.00 0.00 38.12 4.75
348 349 4.370917 TGAAAGCAAAGATTTTCAGTGGC 58.629 39.130 0.00 0.00 38.12 5.01
349 350 6.702723 TCATTGAAAGCAAAGATTTTCAGTGG 59.297 34.615 16.85 5.84 44.42 4.00
350 351 7.703298 TCATTGAAAGCAAAGATTTTCAGTG 57.297 32.000 13.09 13.09 45.06 3.66
351 352 8.361592 CTTCATTGAAAGCAAAGATTTTCAGT 57.638 30.769 0.01 0.00 42.35 3.41
374 375 9.428097 GGTCAATCTTGAAGAATATTTTTGCTT 57.572 29.630 0.00 0.00 39.21 3.91
375 376 8.810041 AGGTCAATCTTGAAGAATATTTTTGCT 58.190 29.630 0.00 0.00 39.21 3.91
376 377 8.992835 AGGTCAATCTTGAAGAATATTTTTGC 57.007 30.769 0.00 0.00 39.21 3.68
383 384 9.958180 TCATGTTAAGGTCAATCTTGAAGAATA 57.042 29.630 0.00 0.00 39.21 1.75
384 385 8.734386 GTCATGTTAAGGTCAATCTTGAAGAAT 58.266 33.333 0.00 0.00 39.21 2.40
385 386 7.174946 GGTCATGTTAAGGTCAATCTTGAAGAA 59.825 37.037 0.00 0.00 39.21 2.52
386 387 6.655003 GGTCATGTTAAGGTCAATCTTGAAGA 59.345 38.462 0.00 0.00 39.21 2.87
387 388 6.656693 AGGTCATGTTAAGGTCAATCTTGAAG 59.343 38.462 0.00 0.00 39.21 3.02
388 389 6.430925 CAGGTCATGTTAAGGTCAATCTTGAA 59.569 38.462 0.00 0.00 39.21 2.69
389 390 5.939883 CAGGTCATGTTAAGGTCAATCTTGA 59.060 40.000 0.00 0.00 34.20 3.02
390 391 5.124457 CCAGGTCATGTTAAGGTCAATCTTG 59.876 44.000 0.00 0.00 0.00 3.02
391 392 5.256474 CCAGGTCATGTTAAGGTCAATCTT 58.744 41.667 0.00 0.00 0.00 2.40
392 393 4.324563 CCCAGGTCATGTTAAGGTCAATCT 60.325 45.833 0.00 0.00 0.00 2.40
393 394 3.947834 CCCAGGTCATGTTAAGGTCAATC 59.052 47.826 0.00 0.00 0.00 2.67
394 395 3.591527 TCCCAGGTCATGTTAAGGTCAAT 59.408 43.478 0.00 0.00 0.00 2.57
395 396 2.983192 TCCCAGGTCATGTTAAGGTCAA 59.017 45.455 0.00 0.00 0.00 3.18
396 397 2.626785 TCCCAGGTCATGTTAAGGTCA 58.373 47.619 0.00 0.00 0.00 4.02
397 398 3.713826 TTCCCAGGTCATGTTAAGGTC 57.286 47.619 0.00 0.00 0.00 3.85
398 399 4.344104 CATTTCCCAGGTCATGTTAAGGT 58.656 43.478 0.00 0.00 0.00 3.50
399 400 3.701040 CCATTTCCCAGGTCATGTTAAGG 59.299 47.826 0.00 0.00 0.00 2.69
400 401 4.344104 ACCATTTCCCAGGTCATGTTAAG 58.656 43.478 0.00 0.00 30.79 1.85
401 402 4.396357 ACCATTTCCCAGGTCATGTTAA 57.604 40.909 0.00 0.00 30.79 2.01
402 403 4.396357 AACCATTTCCCAGGTCATGTTA 57.604 40.909 0.00 0.00 37.07 2.41
403 404 2.999185 ACCATTTCCCAGGTCATGTT 57.001 45.000 0.00 0.00 30.79 2.71
404 405 2.999185 AACCATTTCCCAGGTCATGT 57.001 45.000 0.00 0.00 37.07 3.21
405 406 5.301805 GGTAATAACCATTTCCCAGGTCATG 59.698 44.000 0.00 0.00 45.98 3.07
406 407 5.454966 GGTAATAACCATTTCCCAGGTCAT 58.545 41.667 0.00 0.00 45.98 3.06
407 408 4.862371 GGTAATAACCATTTCCCAGGTCA 58.138 43.478 0.00 0.00 45.98 4.02
427 428 9.256228 TCTGATAGTAGTTTAATCTGAGTTGGT 57.744 33.333 0.00 0.00 0.00 3.67
428 429 9.743057 CTCTGATAGTAGTTTAATCTGAGTTGG 57.257 37.037 9.15 0.00 39.21 3.77
429 430 9.243637 GCTCTGATAGTAGTTTAATCTGAGTTG 57.756 37.037 15.36 0.00 42.78 3.16
430 431 8.417884 GGCTCTGATAGTAGTTTAATCTGAGTT 58.582 37.037 15.36 0.00 42.78 3.01
431 432 7.782644 AGGCTCTGATAGTAGTTTAATCTGAGT 59.217 37.037 15.36 0.00 42.78 3.41
432 433 8.081633 CAGGCTCTGATAGTAGTTTAATCTGAG 58.918 40.741 11.74 11.74 43.26 3.35
433 434 7.561722 ACAGGCTCTGATAGTAGTTTAATCTGA 59.438 37.037 8.91 0.00 35.18 3.27
434 435 7.721402 ACAGGCTCTGATAGTAGTTTAATCTG 58.279 38.462 8.91 0.00 35.18 2.90
435 436 7.561722 TGACAGGCTCTGATAGTAGTTTAATCT 59.438 37.037 8.91 0.00 35.18 2.40
436 437 7.650104 GTGACAGGCTCTGATAGTAGTTTAATC 59.350 40.741 8.91 0.00 35.18 1.75
437 438 7.124298 TGTGACAGGCTCTGATAGTAGTTTAAT 59.876 37.037 8.91 0.00 35.18 1.40
438 439 6.436218 TGTGACAGGCTCTGATAGTAGTTTAA 59.564 38.462 8.91 0.00 35.18 1.52
439 440 5.949952 TGTGACAGGCTCTGATAGTAGTTTA 59.050 40.000 8.91 0.00 35.18 2.01
440 441 4.772624 TGTGACAGGCTCTGATAGTAGTTT 59.227 41.667 8.91 0.00 35.18 2.66
441 442 4.344978 TGTGACAGGCTCTGATAGTAGTT 58.655 43.478 8.91 0.00 35.18 2.24
442 443 3.969553 TGTGACAGGCTCTGATAGTAGT 58.030 45.455 8.91 0.00 35.18 2.73
443 444 4.261952 CCATGTGACAGGCTCTGATAGTAG 60.262 50.000 8.91 0.00 35.18 2.57
444 445 3.638627 CCATGTGACAGGCTCTGATAGTA 59.361 47.826 8.91 0.00 35.18 1.82
445 446 2.433604 CCATGTGACAGGCTCTGATAGT 59.566 50.000 8.91 0.00 35.18 2.12
446 447 2.433604 ACCATGTGACAGGCTCTGATAG 59.566 50.000 8.91 0.00 35.18 2.08
447 448 2.470990 ACCATGTGACAGGCTCTGATA 58.529 47.619 8.91 0.00 35.18 2.15
448 449 1.283347 ACCATGTGACAGGCTCTGAT 58.717 50.000 8.91 0.00 35.18 2.90
449 450 1.059098 AACCATGTGACAGGCTCTGA 58.941 50.000 8.91 0.00 35.18 3.27
450 451 1.162698 CAACCATGTGACAGGCTCTG 58.837 55.000 0.00 1.16 37.52 3.35
451 452 0.767375 ACAACCATGTGACAGGCTCT 59.233 50.000 0.00 0.00 38.69 4.09
452 453 1.160137 GACAACCATGTGACAGGCTC 58.840 55.000 0.00 0.00 40.74 4.70
453 454 0.473755 TGACAACCATGTGACAGGCT 59.526 50.000 0.00 0.00 40.74 4.58
454 455 1.001378 GTTGACAACCATGTGACAGGC 60.001 52.381 7.10 0.00 40.74 4.85
455 456 2.296792 TGTTGACAACCATGTGACAGG 58.703 47.619 15.59 0.00 40.74 4.00
459 460 4.218200 GGATGATTGTTGACAACCATGTGA 59.782 41.667 15.59 0.00 40.06 3.58
472 473 4.003648 GACTCCAACTTCGGATGATTGTT 58.996 43.478 0.00 0.00 33.56 2.83
474 475 3.866651 AGACTCCAACTTCGGATGATTG 58.133 45.455 0.00 0.04 33.56 2.67
489 490 1.153997 GTCCTCGCGTGAAGACTCC 60.154 63.158 18.29 0.00 33.57 3.85
509 510 1.070577 CCTCGTCAAACTGTCAAAGCG 60.071 52.381 0.00 0.00 0.00 4.68
510 511 1.334149 GCCTCGTCAAACTGTCAAAGC 60.334 52.381 0.00 0.00 0.00 3.51
513 514 0.179094 ACGCCTCGTCAAACTGTCAA 60.179 50.000 0.00 0.00 33.69 3.18
519 520 0.949105 ATGGTCACGCCTCGTCAAAC 60.949 55.000 0.00 0.00 38.32 2.93
532 533 1.445410 GTGTCGCGTGCTATGGTCA 60.445 57.895 5.77 0.00 0.00 4.02
551 552 1.369091 CCATGTGCTTCGGTGTAGGC 61.369 60.000 0.00 0.00 0.00 3.93
614 616 0.250513 AAATCTCAGGAGGTGGTCGC 59.749 55.000 0.00 0.00 0.00 5.19
616 618 1.909302 TGGAAATCTCAGGAGGTGGTC 59.091 52.381 0.00 0.00 0.00 4.02
617 619 1.630878 GTGGAAATCTCAGGAGGTGGT 59.369 52.381 0.00 0.00 0.00 4.16
618 620 1.406069 CGTGGAAATCTCAGGAGGTGG 60.406 57.143 0.00 0.00 0.00 4.61
619 621 2.009042 GCGTGGAAATCTCAGGAGGTG 61.009 57.143 0.00 0.00 0.00 4.00
620 622 0.250513 GCGTGGAAATCTCAGGAGGT 59.749 55.000 0.00 0.00 0.00 3.85
621 623 0.807667 CGCGTGGAAATCTCAGGAGG 60.808 60.000 0.00 0.00 0.00 4.30
622 624 0.173481 TCGCGTGGAAATCTCAGGAG 59.827 55.000 5.77 0.00 0.00 3.69
623 625 0.108804 GTCGCGTGGAAATCTCAGGA 60.109 55.000 5.77 0.00 0.00 3.86
624 626 1.413767 CGTCGCGTGGAAATCTCAGG 61.414 60.000 5.77 0.00 0.00 3.86
625 627 1.413767 CCGTCGCGTGGAAATCTCAG 61.414 60.000 13.71 0.00 0.00 3.35
626 628 1.445410 CCGTCGCGTGGAAATCTCA 60.445 57.895 13.71 0.00 0.00 3.27
627 629 2.799540 GCCGTCGCGTGGAAATCTC 61.800 63.158 21.34 1.75 0.00 2.75
628 630 2.813908 GCCGTCGCGTGGAAATCT 60.814 61.111 21.34 0.00 0.00 2.40
746 765 0.601841 TTTCCTTTCTCGTCGGTGCC 60.602 55.000 0.00 0.00 0.00 5.01
748 767 2.415512 GGATTTTCCTTTCTCGTCGGTG 59.584 50.000 0.00 0.00 32.53 4.94
749 768 2.614734 GGGATTTTCCTTTCTCGTCGGT 60.615 50.000 0.00 0.00 36.57 4.69
750 769 2.007608 GGGATTTTCCTTTCTCGTCGG 58.992 52.381 0.00 0.00 36.57 4.79
751 770 2.007608 GGGGATTTTCCTTTCTCGTCG 58.992 52.381 0.00 0.00 36.57 5.12
752 771 3.271729 GAGGGGATTTTCCTTTCTCGTC 58.728 50.000 0.00 0.00 36.57 4.20
753 772 2.354805 CGAGGGGATTTTCCTTTCTCGT 60.355 50.000 17.56 0.00 41.50 4.18
754 773 2.280628 CGAGGGGATTTTCCTTTCTCG 58.719 52.381 14.59 14.59 41.09 4.04
755 774 2.017782 GCGAGGGGATTTTCCTTTCTC 58.982 52.381 0.00 0.00 36.57 2.87
756 775 1.341089 GGCGAGGGGATTTTCCTTTCT 60.341 52.381 0.00 0.00 36.57 2.52
802 823 2.067932 CTGACAGGTTGGGCCAGGAA 62.068 60.000 6.23 0.00 40.61 3.36
803 824 2.449518 TGACAGGTTGGGCCAGGA 60.450 61.111 6.23 0.00 40.61 3.86
828 849 2.050442 GTTTGGCTTTGGCGACGG 60.050 61.111 0.00 0.00 39.81 4.79
829 850 1.657181 GTGTTTGGCTTTGGCGACG 60.657 57.895 0.00 0.00 39.81 5.12
912 933 1.980052 CGAGGTGGGGCTGAAACTA 59.020 57.895 0.00 0.00 0.00 2.24
913 934 2.750350 CGAGGTGGGGCTGAAACT 59.250 61.111 0.00 0.00 0.00 2.66
914 935 3.056328 GCGAGGTGGGGCTGAAAC 61.056 66.667 0.00 0.00 0.00 2.78
1384 1415 2.351276 GCCGTCCATCTTGGTGGT 59.649 61.111 0.00 0.00 39.03 4.16
1748 1785 2.762043 GCCTCTCCTTCTCGGCCT 60.762 66.667 0.00 0.00 36.56 5.19
1853 1890 2.153547 AATTCCCACGGCGCAAAAGG 62.154 55.000 10.83 4.34 0.00 3.11
1933 1970 8.638629 AAACCAATATACTCGAGCTATCTACT 57.361 34.615 13.61 0.00 0.00 2.57
2057 2094 4.453478 GCATTGTGTGATCAGAACAAGAGA 59.547 41.667 21.92 6.56 37.24 3.10
2083 2121 5.302823 GCCAGCCAAGGATTATTAATTCAGT 59.697 40.000 0.00 0.00 0.00 3.41
2118 2161 7.518052 GCGGAACAAGATAATCAGATTTCTCAG 60.518 40.741 0.00 4.33 0.00 3.35
2119 2162 6.258727 GCGGAACAAGATAATCAGATTTCTCA 59.741 38.462 0.00 0.00 0.00 3.27
2127 2190 3.199880 AGGGCGGAACAAGATAATCAG 57.800 47.619 0.00 0.00 0.00 2.90
2132 2195 2.438021 AGCAATAGGGCGGAACAAGATA 59.562 45.455 0.00 0.00 39.27 1.98
2138 2201 1.459450 TTTCAGCAATAGGGCGGAAC 58.541 50.000 0.39 0.00 45.31 3.62
2164 2227 1.182385 TTCGGGACCAATTTGCCCAC 61.182 55.000 11.31 0.00 42.14 4.61
2165 2228 0.252012 ATTCGGGACCAATTTGCCCA 60.252 50.000 11.31 0.00 42.14 5.36
2166 2229 0.901827 AATTCGGGACCAATTTGCCC 59.098 50.000 0.00 2.78 38.53 5.36
2167 2230 1.548269 TGAATTCGGGACCAATTTGCC 59.452 47.619 0.04 0.00 0.00 4.52
2168 2231 2.417243 CCTGAATTCGGGACCAATTTGC 60.417 50.000 26.78 0.00 45.36 3.68
2169 2232 2.166254 CCCTGAATTCGGGACCAATTTG 59.834 50.000 31.40 10.70 45.36 2.32
2170 2233 2.225267 ACCCTGAATTCGGGACCAATTT 60.225 45.455 31.40 9.93 45.36 1.82
2171 2234 1.357761 ACCCTGAATTCGGGACCAATT 59.642 47.619 31.40 10.55 45.36 2.32
2172 2235 0.999712 ACCCTGAATTCGGGACCAAT 59.000 50.000 31.40 11.18 45.36 3.16
2174 2237 0.037590 CAACCCTGAATTCGGGACCA 59.962 55.000 31.40 0.00 45.36 4.02
2175 2238 1.313091 GCAACCCTGAATTCGGGACC 61.313 60.000 31.40 17.18 45.36 4.46
2176 2239 1.644786 CGCAACCCTGAATTCGGGAC 61.645 60.000 31.40 19.92 45.36 4.46
2177 2240 1.376683 CGCAACCCTGAATTCGGGA 60.377 57.895 31.40 0.00 45.36 5.14
2179 2242 1.006832 CTACGCAACCCTGAATTCGG 58.993 55.000 7.35 7.35 0.00 4.30
2180 2243 1.006832 CCTACGCAACCCTGAATTCG 58.993 55.000 0.04 0.00 0.00 3.34
2181 2244 2.109425 ACCTACGCAACCCTGAATTC 57.891 50.000 0.00 0.00 0.00 2.17
2182 2245 2.579410 AACCTACGCAACCCTGAATT 57.421 45.000 0.00 0.00 0.00 2.17
2184 2247 2.351706 AAAACCTACGCAACCCTGAA 57.648 45.000 0.00 0.00 0.00 3.02
2185 2248 2.351706 AAAAACCTACGCAACCCTGA 57.648 45.000 0.00 0.00 0.00 3.86
2210 2273 1.030488 CAGCCATTCTGGTGCTCCTG 61.030 60.000 6.34 5.84 40.46 3.86
2211 2274 1.302285 CAGCCATTCTGGTGCTCCT 59.698 57.895 6.34 0.00 40.46 3.69
2212 2275 3.915575 CAGCCATTCTGGTGCTCC 58.084 61.111 0.00 0.00 40.46 4.70
2249 2330 3.157252 GATCCCAGCCTCCGAGCA 61.157 66.667 0.00 0.00 34.23 4.26
2250 2331 3.934962 GGATCCCAGCCTCCGAGC 61.935 72.222 0.00 0.00 0.00 5.03
2253 2334 2.429058 CATGGATCCCAGCCTCCG 59.571 66.667 9.90 0.00 36.75 4.63
2254 2335 1.150081 CACATGGATCCCAGCCTCC 59.850 63.158 9.90 0.00 36.75 4.30
2256 2337 0.033796 CAACACATGGATCCCAGCCT 60.034 55.000 9.90 0.00 36.75 4.58
2257 2338 2.496942 CAACACATGGATCCCAGCC 58.503 57.895 9.90 0.00 36.75 4.85
2267 2348 4.383850 TGAACCAAAAGACCAACACATG 57.616 40.909 0.00 0.00 0.00 3.21
2268 2349 5.612725 AATGAACCAAAAGACCAACACAT 57.387 34.783 0.00 0.00 0.00 3.21
2305 2426 1.203994 GCTGCAGTGCCATGAGATTTT 59.796 47.619 16.64 0.00 0.00 1.82
2306 2427 0.815734 GCTGCAGTGCCATGAGATTT 59.184 50.000 16.64 0.00 0.00 2.17
2310 2431 0.315886 TTTTGCTGCAGTGCCATGAG 59.684 50.000 16.64 4.06 0.00 2.90
2333 2454 1.407258 CCAGGAACGCAAAGAAACCAA 59.593 47.619 0.00 0.00 0.00 3.67
2345 2466 0.817634 TGTTTCAGTGCCCAGGAACG 60.818 55.000 0.00 0.00 0.00 3.95
2360 2481 6.543831 CACTATAGGAGCTAGCCATTTTGTTT 59.456 38.462 12.13 0.00 0.00 2.83
2362 2483 5.131142 ACACTATAGGAGCTAGCCATTTTGT 59.869 40.000 12.13 2.16 0.00 2.83
2364 2485 5.896073 ACACTATAGGAGCTAGCCATTTT 57.104 39.130 12.13 0.00 0.00 1.82
2366 2487 4.284746 GGAACACTATAGGAGCTAGCCATT 59.715 45.833 12.13 0.00 0.00 3.16
2377 2498 3.914426 AGTGCCAAGGAACACTATAGG 57.086 47.619 4.43 0.00 45.09 2.57
2379 2500 3.585289 TCCAAGTGCCAAGGAACACTATA 59.415 43.478 0.00 0.00 46.17 1.31
2380 2501 2.375174 TCCAAGTGCCAAGGAACACTAT 59.625 45.455 0.00 0.00 46.17 2.12
2381 2502 1.771854 TCCAAGTGCCAAGGAACACTA 59.228 47.619 0.00 0.00 46.17 2.74
2407 2530 5.782845 AGAGTTATCTATCCAGGGACATTCC 59.217 44.000 0.00 0.00 32.54 3.01
2426 2549 2.350514 GCTGGCCTCTGCAGAGTT 59.649 61.111 35.47 0.00 40.48 3.01
2438 2564 1.897560 ACAGTAAAGAAGTGGCTGGC 58.102 50.000 0.00 0.00 32.29 4.85
2439 2565 4.610945 CAAAACAGTAAAGAAGTGGCTGG 58.389 43.478 0.00 0.00 32.29 4.85
2440 2566 4.044426 GCAAAACAGTAAAGAAGTGGCTG 58.956 43.478 0.00 0.00 32.29 4.85
2441 2567 3.954258 AGCAAAACAGTAAAGAAGTGGCT 59.046 39.130 0.00 0.00 32.29 4.75
2442 2568 4.307443 AGCAAAACAGTAAAGAAGTGGC 57.693 40.909 0.00 0.00 32.29 5.01
2454 2580 7.201435 GGAGTTTGTTTAGTTCAAGCAAAACAG 60.201 37.037 1.40 0.00 45.31 3.16
2465 2591 5.763204 TCTGTCATGGGAGTTTGTTTAGTTC 59.237 40.000 0.00 0.00 0.00 3.01
2480 2606 3.181490 CCAAGAACATGCATCTGTCATGG 60.181 47.826 0.00 3.50 44.07 3.66
2481 2607 3.733988 GCCAAGAACATGCATCTGTCATG 60.734 47.826 0.00 10.84 44.99 3.07
2521 2649 2.369860 AGATTGCAGAGACAAGGACACA 59.630 45.455 0.00 0.00 31.96 3.72
2532 2660 5.562506 ACATGTGATTTGAGATTGCAGAG 57.437 39.130 0.00 0.00 0.00 3.35
2537 2665 8.865978 CCATTGTTAACATGTGATTTGAGATTG 58.134 33.333 9.56 0.00 0.00 2.67
2544 2672 8.635765 AGTACTCCATTGTTAACATGTGATTT 57.364 30.769 9.56 2.57 0.00 2.17
2551 2679 7.913789 TCAACCTAGTACTCCATTGTTAACAT 58.086 34.615 9.56 0.00 0.00 2.71
2586 2714 6.370994 AGAGTAGAACTAGAACGATCAACGAA 59.629 38.462 0.00 0.00 45.77 3.85
2592 2720 7.922278 TGAGTCTAGAGTAGAACTAGAACGATC 59.078 40.741 0.00 0.00 44.84 3.69
2593 2721 7.784037 TGAGTCTAGAGTAGAACTAGAACGAT 58.216 38.462 0.00 0.00 44.84 3.73
2594 2722 7.167924 TGAGTCTAGAGTAGAACTAGAACGA 57.832 40.000 0.00 0.00 44.84 3.85
2595 2723 7.707464 TGATGAGTCTAGAGTAGAACTAGAACG 59.293 40.741 0.00 0.00 44.84 3.95
2596 2724 8.951787 TGATGAGTCTAGAGTAGAACTAGAAC 57.048 38.462 0.00 0.00 44.84 3.01
2609 2738 2.739943 CCCACCACTGATGAGTCTAGA 58.260 52.381 0.00 0.00 0.00 2.43
2612 2741 1.557269 GGCCCACCACTGATGAGTCT 61.557 60.000 0.00 0.00 35.26 3.24
2616 2745 2.927856 ACGGCCCACCACTGATGA 60.928 61.111 0.00 0.00 34.57 2.92
2636 2765 2.280797 TGCTCCAGTTCCACACGC 60.281 61.111 0.00 0.00 0.00 5.34
2645 2774 2.362369 CCGATCAGGGTGCTCCAGT 61.362 63.158 7.20 0.00 38.24 4.00
2655 2784 1.139654 TGGATTCTCTTGCCGATCAGG 59.860 52.381 0.00 0.00 44.97 3.86
2658 2787 3.209410 ACATTGGATTCTCTTGCCGATC 58.791 45.455 0.00 0.00 0.00 3.69
2661 2790 1.672881 GGACATTGGATTCTCTTGCCG 59.327 52.381 0.00 0.00 0.00 5.69
2681 2824 1.272490 AGTGGACAGTGGTCACATACG 59.728 52.381 16.72 0.00 46.17 3.06
2696 2839 2.842462 ACACCGGTGAGCAGTGGA 60.842 61.111 40.21 0.00 35.79 4.02
2709 2852 0.976641 TGACCTGGATCTGTCACACC 59.023 55.000 0.00 0.00 36.62 4.16
2718 2861 4.335416 TCCAAAAATCAGTGACCTGGATC 58.665 43.478 0.00 0.00 39.31 3.36
2741 2884 4.149598 TGGTAGGCTAATTCTGAGCGATA 58.850 43.478 0.00 0.00 41.06 2.92
2745 2888 3.071602 TGGATGGTAGGCTAATTCTGAGC 59.928 47.826 0.00 0.00 39.33 4.26
2747 2890 3.071602 GCTGGATGGTAGGCTAATTCTGA 59.928 47.826 0.00 0.00 0.00 3.27
2758 2901 2.289072 CCGAACATAGGCTGGATGGTAG 60.289 54.545 0.00 0.00 0.00 3.18
2775 2918 3.183754 CACGCAAGATACATGTACCGAA 58.816 45.455 7.96 0.00 43.62 4.30
2776 2919 2.164827 ACACGCAAGATACATGTACCGA 59.835 45.455 7.96 0.00 43.62 4.69
2777 2920 2.536365 ACACGCAAGATACATGTACCG 58.464 47.619 7.96 8.61 43.62 4.02
2778 2921 7.884816 ATATAACACGCAAGATACATGTACC 57.115 36.000 7.96 0.00 43.62 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.