>input_sequence_68342
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----------------------------------------------------------------------ATGACGGTGC
CGCCGTCGCCGGAGCCGTTCCGCGTCTTCGTCGGGTACGACCCGAAGGAGCACGAGGCGTACGAGGTGTGCCGCCGCAGC
CTGATCCGCCACGCCACCGTGCCGCTCGACGTGCGCCCCATCCGGCAGCCGGACCTGCGCGCGTCGGGCCTCTACTGGCG
CACGCGGGGCCACATGGAGAGCACCGAGTTCTCCTTCACCCGCTTCCTCACCCCCTTCCTCGCCGGCTACCGCGGCTGGG
CGCTCTTCATCGACTGCGACTTCCTCTACCTCGCCGACGTCGCCGAGCTCATCGCCTCCGCCGTGCCCTCGGACGCCGCC
GCCGCCAAGCGCCTCGCCGTCGTCTGCGTCAAGCACGAGTACGCGCCCCTCGAGACCACCAAGATGGACGGCGCCATGCA
GACCGTGTACCCGCGCAAGAACTGGTCCTCCATGGTGCTCTACAACTGCGCCCACCCCAAGAACGTCGCCACGCTCACCC
CGGACGCCGTCAGCACCAAGACCGGCGCCTTCCTCCACCGATTCTCCTGGCTCGAAGACGACGAGATCGGGGAGGTGCCC
TTCGTCTGGAACTTCCTCGTCGGCCACAACAAGGTCGACCCT------GACGACCCGACCACGAAGCCCAAGGCCCTGCA
CTACACCTGCGGGGGACCCTGGTTCGACAGGTACAGGGACTGCGAGTTCGCCGACCTCTGGATCAAGGAGGCCGAGGAGC
TCAGGGCGGAGAAGGAGAAGCGCAAGGCCGAGAAGGAGAGGCTCGAGCTCGAGGACGACGAGGACGACGAGGGGAATTGA
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>chr1A_1_TraesCS1A01G176800
TGAGCAGGTTCCAGCGATCGTTCGCTCATTCGGACGACCCCTCCTGAGTGTGCGGTTATGCGAGTCTATGAAATAAAGGA
CTTCACTACAAATCTGACATCAGATTTTTTACCATGTGACTCAAACATTTTCCATGACAAATTATATTATTTGAGGATGA
CAAGTTTAGTTAGCGAGCATGGCAAATTCACCTCAGTTCATTTATTTTTTCAGAATATTATTGTGCTTGCAAACTAAATT
TGCCACCATCTCGCCAATATAATTTGTCATAAAAAAAATTCAGATTTGTCATGCCTAAAAATCTAAAGTCAGATTTTTAG
TGTTTCCGACGATAAACAGCTACTTTCAGCCACTGAAAATCTTTGCTTTCAATGAAGCAAAAATATTCTTCAAGATTGAC
CTTAACATGACCTGGGAAATGGTTATTACCAACTCAGATTAAACTACTATCAGAGCCTGTCACATGGTTGTCAACAATCA
TCCGAAGTTGGAGTCTTCACGCGAGGACGCGCTTTGACAGTTTGACGAGGCGTGACCATAGCACGCGACACG-CCTACAC
CGAAGCACATGGCCGTCCAGTGACCCCCGGCCCACGCCGCAGGCTGCGGACTCCCGCGACCACCTCCTGAGATTTCCACG
CGACGGCCGCGTTCCCGCCCGTGCCGTGC-----------------CCACGCCGCCTCGCCACCGACATCCTCTTCCCCG
CGGCCGCTGCTCCCGGCGTTACCCAGCTGTCAACCCCCCACCGAGGCACCGACGAGAAAGGAAAATCCCCTCGCC--GTC
TCACTGCCCCACGGGCCCCGCTTTCCTGGCCCAACCTGTCAGTCCCTCCCGTCGCCAAAGCCAAACACACACCAGGATCA
TTAGATTCGAAACAGATCTCAAGATCACCTCCCCCCGTTTGCCATCTTTAGTTAGTTTCAGCCCCACCTCGCCT------
----CCCTCCATTAAAGCCCGCGCCCTCCTCCTCCGCTCCATTCCCCTCGCCACCGCCCAGATCCAGACCATGACGGTGC
CGCCGTCGCCGGAGCCGTTCCGCGTCTTCGTCGGGTACGACCCGAAGGAGCACGAGGCGTACGAGGTGTGCCGCCGCAGC
CTGATCCGCCACGCCACCGTGCCGCTCGACGTGCGCCCCATCCGGCAGCCGGACCTGCGCGCGTCGGGCCTCTACTGGCG
CACGCGGGGCCACATGGAGAGCACCGAGTTCTCCTTCACCCGCTTCCTCACCCCCTTCCTCGCCGGCTACCGCGGCTGGG
CGCTCTTCATCGACTGCGACTTCCTCTACCTCGCCGACGTCGCCGAGCTCATCGCCTCCGCCGTGCCCTCGGACGCCGCC
GCCGCCAAGCGCCTCGCCGTCGTCTGCGTCAAGCACGAGTACGCGCCCCTCGAGACCACCAAGATGGACGGCGCCATGCA
GACCGTGTACCCGCGCAAGAACTGGTCCTCCATGGTGCTCTACAACTGCGCCCACCCCAAGAACGTCGCCACGCTCACCC
CGGACGCCGTCAGCACCAAGACCGGCGCCTTCCTCCACCGATTCTCCTGGCTCGAAGACGACGAGATCGGGGAGGTGCCC
TTCGTCTGGAACTTCCTCGTCGGCCACAACAAGGTCGACCCT------GACGACCCGACCACGAAGCCCAAGGCCCTGCA
CTACACCTGCGGGGGACCCTGGTTCGACAGGTACAGGGACTGCGAGTTCGCCGACCTCTGGATCAAGGAGGCCGAGGAGC
TCAGGGCGGAGAAGGAGAAGCGCAAGGCCGAGAAGGAGAGGCTCGAGCTCGAGGACGACGAGGACGACGAGGGGAATTGA
TGGATGATGGGGCCGGCCAACAAGTTTTACTGCATTGCATTGCATTGGTCCTTTTGCGCCGTGGGAATTCTTTCGATTCA
ATCTGTTTGTTATGCTGGTTTCTTGGTATAGGTGGTAGGGGAGGCCATGAGTAGATAGCTCGAGTATATTGGTTTAGTAT
GCTCTTGTGTAGTAGCTGCAATCGATCTATGAATGAACCAGTCCTCATTGCCAAGAGATTTTATCCTTTGGCCTTGCGCC
TATCAGTTCTGCTTCTCTTGTT-CTGATCACACAATGCTTACTGAATTAATAATCCTTGGCTGGCTGATGT-----TGGA
CTGA--------------------GAAATCTGATTATCTTGTTCCGCCCTATTGCTGAAAACGATGGTGGGCAAATTGGT
CCCGAATTCAGGGTTGCGTAGGTTTTTTGGTTCAGGA------------------GCACCAGAATGGCTGGCTTCTTTGT
GTTCCTTGGTGCTCGGAGGCTGGGATCCA----------------------------------------TGTGTTGGTCT
TTTGGTTCATTTCGGTTCAGGAGATAAAATCTCATGGCACTGCAGCAAAATGGTTGGTTTCTTTGCGTTCCTGGGCACTG
AAACAAAATGGCTAGCTCCTATA--GTGTTCCTTGGCACTTGGAGGCTGGGAATGTCCCTGGATAGATA---ACTCTGCA
GAGGCCAGCCACTTCTTTACTGTTTTGCTTGAACTAAACAAACTCCCATGACAGATGCATGTTCTTGGCGCTGGACCAGA
CAG--AGATGTGTCCTTGTCTCTGCAATCTCAAATCACATGTTAACAATGGAGTACTAGGTTGAACACAACCATTCGTTG
ATCG-TTCTAGTTCTACTCTAGACTCATCAGTGGTGGGCCGTGGGCGTGTGGAACTGGAGCACCCTGATC----------
----GGCAAGAGAATCCAATGTCCGTATGTGACCACTGTCCACTGCTCACCGGTGTGACAGATCCAGGTCACTGATTTTT
GGATATCGCTCAGAATTAGCCTACCATCCAGCCTATGTTCGGTACATGTATCTTGCGTGTTATATT
>chr1D_457
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--------------------------------------------------------CTGCCACATGGTTGTCGATAATCA
TCCGAAGTTCGAGTCCTGACGCGAGGACGGACTCTGACACTTTGACGAGGCGCGACCACAGCACGCGACACCCCCTACAC
CGAAGCACATGGGCGTCCAGTGACCCCCGGCCCACGCCGCAGGCCGCGGACACCCCCT------------GATTTCCACG
CGGCGACCGCGTTCCCGCCCGTGCCGTGGCCGTGGCCGTGCCGCATCCACGCCGCCTCGCCACCGACATCCTCTTCCCCG
CGGCCGCTGCTCCCGGCGTTACCCAGCTGTCAATCCCCCACCGACGAC-------GAAAAGAAAATCCCCTCGCC--GTC
TCACTGCCACACGGGCCCCGCTC-CCTGGCCCAACCTGTCAGTCCCTCGTGTCGCCAAAGCTAAACACACACCAGGATCA
TTAGATTCGAAACAGATCTCAAGATCACCT-CCCCCGTTTGCCATCTTTAGTAC-TTTCAGCCCCACCTCGCCT------
----CCCTCCATTAAAGCCCGCGCCCTCCTCCTCCGCTCCATTCCCCTCGCCACCGCCCAGATCCAGACCATGACGGTGC
CGCCGTCGCCGGAGCCGTTCCGCGTCTTCGTCGGGTACGACCCGAAGGAGCACGAGGCGTACGAGGTGTGCCGCCGCAGC
CTGATCCGCCACGCCACCGTGCCGCTCGACGTGCGCCCCATCCGGCAGCCGGACCTGCGCGCGTCGGGCCTCTACTGGCG
CACGCGGGGCCACATGGAGAGCACCGAGTTCTCCTTCACCCGCTTCCTCACCCCCTTCCTCGCCGGCTACCGCGGCTGGG
CGCTCTTCATCGACTGCGACTTCCTCTACCTCGCCGACGTCGCCGAGCTCATCGCCTCCGCCGTGCCCTCCGACGCCGCC
GCCGCAAAGCGCCTCGCCGTCGTCTGCGTCAAGCACGAGTACACGCCCCTCGAGGCCACCAAGATGGACGGCGTCATGCA
GACCGTGTACCCGCGCAAGAACTGGTCCTCCATGGTGCTCTACAACTGCGCCCACCCCAAGAACGTCGCCGCGCTCACCC
CGGATGCTGTCAGCACCAAGACCGGCGCCTTCCTCCACCGATTCTCCTGGCTCGACGACGACGAGATCGGGGAGGTGCCC
TTCGTCTGGAACTTCCTCGTCGGCCACAACAAGGTCGACCCT------GACGACCCGACCACGCAGCCGAAGGCCCTGCA
CTACACCTGCGGGGGACCCTGGTTCGACAGGTACAGGGACTGCGAGTTCGCCGACCTCTGGATCAAGGAGGCAGAGGAGC
TCAGGGCGGAGAAGGAGAAGCGCAGGGCCGAGAAGGAGAGGCTCGAGCTTGAGGACGACGAGGACGACGAGGGGAATTGA
TGGGTGATGGGGCCGGCCCACAAGT-TTACTGCATTGCATTGCATTGGTTCTTTTGCGCCGTGGGAATTCTTTCGATTCA
ATCTGTTTGTTATGCTGGTTTCATGGTATAGGTGGTAGGGGAGGCCATGGGTAGATAGCTCGAGTATATTGG--TAGTAT
GCTCTTGTGTAGTAGTCGCAATCGATCTATGAATGAACCAGTCCTCATTGCAAGAGATTATCATCCTTTGGCCTCGCGCC
TGTCAGTTCTGCTGCTCTTGTTTCTGATCGCACCATGCTTGCTGAATTAATGATCCTTGGCTGGCTGATGT-----TGGA
ACGAATGAGCAATCTGGCTGGCAGGAAAGGTGATCATCTTATTCCGCCCTATTGCTGAAAACGATGTCATCTGTTTGCAG
TTGC-AGGCAGGGTTGTGCTGGTCATTTGGTTAGCAGATGAAATTTCATGGCACTGCAGCAGAATGGCTGGCTTCTTTGT
GTTCCTTGGCACCTCGGCAAAATGGCTGGCTTCTTGTGTTCCTGGGAGCTGGGAGGCTTGTGAGAGTCTTGTGTTGGTCT
TTTGGTTCAGTTCGGTTCAGGAGATGCAATTTCATGGCACTGCAGCAAAATGGCTCGTTTCTTTGTGTTCCTGGGCACTG
CAGCCAGATGGTAG-----CTGCCTGTGTTCCTTGGCACTTG-AGGCTGTGAATGTCCCTGGATAGATGATGACTCTGCA
GAGA----CCACTTGTTTAATGTTTTGCTTCAACTAAACAAACTCTGATGACAGATGCATGTTCTTGGCGCTGGACCAGA
CAGGGAGACGTGTCCTTGTGTCTGTAATCTCGAATCACGTGTTAACAATGGAGTACTAGGTTGATCACAACCAATCGTTC
TAGACTTCTAGTTCTACCCTGGACCCATCAGTGGTGGACCGCGGACGTCTGGAGCTGGAGCACGCTAATGGACGCATACC
TTTGGGCAACAGAATCCAATGTCTGTCTGTGACCACTG-------CTCACCCGTTTGACAAATCGAGGTCACTGATTTTT
GGACATCACCCAGAATTAGCGTACCATCCAGC----------------------------------
>chr1B_620
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--------------------------------------------------CACCTCCT------------GATTTCCACG
CGGCGACCGCGTTCCCGCCCGT------GCCGTGGCCGTGCCGCATCCACGCCGCCTCGCCACCGACATCCTCTTCCCCG
CGGCCGGTGCTCCCGGCGTTACCCAGCTGTCAATCCCCCACCGACGAC-------GAAAGGAAAATCCCCTCTCTCTGTC
TCACTGCCTCACGGGCCCCGCTC-CCTGGCCCAACCTGTCAGTCCCTCGTGTCT------CCAAACACACACCAGGATCA
TTAGATTCGAAACAGATCTCAAGATCACCTCCCCCCGTTTGCCATCTTTAGTAC-TTTCAGCCCCACCTCGCCTCCCTCC
ATCCCCCTCCATTAAAGCCCGCGCCCTCCTCCTCCGCTCCATTCCCCTCGCCACCGCCCAGATCCAGACCATGACGGTGC
CGCCGTCGCCGGAGCCGTTCCGCGTCTTCGTCGGGTACGACCCGAAGGAGCACGAGGCCTACGAGGTGTGTCGCCGCAGC
CTGATCCGCCACGCCACCGTGCCGCTCGACGTGCGCCCCATCCGGCAGCCGGACCTCCGCGCGTCGGGGCTCTACTGGCG
CACGCGGGGTCACATGGAGAGCACTGAGTTCTCCTTCACCCGCTTCCTCACCCCCTTCCTCGCCGGCTACCGCGGCTGGG
CGCTCTTCATCGACTGCGACTTCCTCTACCTCGCCGACGTCGCCGAGCTCATCGCCTCCGCCGTGCCCTCGGACGCTGCC
GCCGCCAAGCGCCTCGCCGTCGTCTGCGTCAAGCACGAGTACAAGCCCCTCGAGGCCACCAAGATGGACGGCGCCATGCA
GACCGTGTACCCGCGCAAGAACTGGTCCTCCATGGTGCTCTACAACTGCGCCCACCCCAAGAACGTCGCCGCGCTCACCC
CGGACGCCGTCAGCACCAAGACCGGCGCCTTCCTCCACCGATTCTCCTGGCTCGACGACGACGAGATCGGGGAGGTGCCC
TTCGTCTGGAACTTCCTCGTCGGCCACAACAGGGTCGACCCT------GACGACCCGGCCACGCAGCCCAAGGCCCTGCA
CTACACCTGCGGGGGACCCTGGTTCGACAGGTACAGGGACTGCGAGTTCGCCGACCTCTGGATCAAGGAGGCCGAGGAGC
TCAGGGCGGAGAAGGAGAAGCGCAGAGCCGAGAAGGAGAGGCTCGAGCTCGAGGACGACGAGGACGACGAGGGGAATTGA
TGGATGATGGGGCCGGCCAACAAGT-TCACTGCATTGCATTG-----GTTCTTTTGCGCCGTGGGAATTCTTTCGATTCA
ATCTGTTTGTTATGCTGGTTTCTTGGTATAGGTGGTAGGGGAGGCCAGAGTAGAATAGCTCGAGTATATTGGTTTAGTAT
GCTCTTGTGTGGTAGCTGCAATCGATCTATGAATGAACCAGTCCTCATTGCCAAGAGATTTTATCCTTTGGCCTTGCCCC
TATCAGTTCTGCTGCTCTTGTTTCTGATCACACCATACTTGCTGAATTAATAATCCTTGGCTAGCTGATGTGATGCTGGA
ACGAATGAGCAATCTGGCTGGCAGGAAATGTGATCATCTTATTCCGCCCTATTGCTGAAAACGATGTCATCTGTTT----
--GC-AGGCAGGGTTGTGTTGGTCATTTGGTTAGTAGATGAAATTTCATGGCACCGCAGCAGAATGGCTGGCTTCTTTGT
GTTCCTTGGCACTGCAGCAAAATGGCTGTCTTCTTGTGTTCCTGGGGGCTGGGAGTCTTGTGAGAGTCTTGTGTTGGTCT
TTTGGTTCATTTCGGTTCAGGAGATGCAATTTCATGGCACTGCAGCAAAATGGCTGGTTTCTTTGTGTTCCTGGGCACTG
CAGCCAGATGGCTAGCTGCCTGCCTGTGTTCCTTGGCACTTG-AGGCTGTGAATGTCCCTGGATAGATGATGACTCTGCA
GAGA----CCACTTCTTTAATGTTTTGCTTCAACTAAGCAAACTCTGATGACAGATGCATGTTCTTGGCGCTGGACCAGA
CAGGGAGA------------TCTGTACTCTCGAATCACGTGTTAACAATGGAGTACTAGGTTGATCACAACCAATCGTTC
TAGACTTCTAGCTCTACCCTGGACCCATCAGTGGTGGACCGTGGACGTGTGGAGCTGGAGCACGCTA-----CGCATACC
TTTGGGCTAGAGAATCCAATGTCTGTATGTAACCGCTG-------CTCACCTGTTTGACAAATCCAGGCCAGTGATTTTT
GGACACCACCCAGAATTAGCGTACCATCCAGCCTATG-----------------------------
>chr7B_1097
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------CGCCGCTCCTCCGTGCCGCTGGAGGTCATCCCGATCGTCCAGCAGGAGCTCCGCGAGGCTGGGCTGTACTGGCG
GGAGCGCGGGCCGACGGAGAGCACAGAGTTCTCCTTCACCCGCTTCCTGACGCCGCACCTCGCCGGCTACCGTGGCTGGG
CGCTCTTCGTGGACTGCGACTTCCTCTTCGTCGCCGACGTGGCAGAGCTGGCGCGCATGGCCGACCCT------------
---------CGCTACGCCGTGCTGTGCGTGCACCACGACTACACGCCCAAGGAGGCCACCAAGATGGACGGCGCCGTGCA
GACGGTGTACCCCCGCAAGAACTGGTCCTCCATGGTGCTCTTCAACTGCGGCCACCCCAAGAACCGCGCTTCGCTCACGC
CGGAGGCCGTGAGCACCCAGAGCGGAGCGCACCTCCACCGATTCGCGTGGCTTGACGACGCCGATGTCGGCGAGGTGCCA
TTCGCGTGGAACTTCCTCGTGGGGCACAACCGCGTCGACCCGGCGGACGTCGACGGGACCACGCCGCGC---GCCATACA
CTACACGTCCGGCGGGCCGTGGTTCGAGCGGTACAAGGACTGCGAGTTCGCCGACCTCTGGGTCCAGGAG----------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S------------S-S-----
---------S-----S-S-----------SS--S-----S------------S-----S------------S--------
------------S-------------------------------S------S---S-SSSSSSSSSSSSS----------
--S--S----------------------S---------------------------------------------------
---------------------------------S----------S-SSSSSSSSS-------------------------
--------S-------------SS------------------------SS------------------------------
----------------------------------------------------SSS-------------------------
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------------------------------------------S-----------S-------------------------
----------------------------------------------------------------------S---------
-------------------------------------------------------S------------------------
---------------------------------------------------------------S----------------
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------------------------S-------------------------------------------------------
-------------------------S-----------------------S------------------------------
-------------------------------------------------S------------------------------
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-------------S-------------------S------S---------------------------------------
SS---------------------------S----S-----S-------------------------SSSSSSSSS-SSSS
SSSSS-SS--------S--S---SS-------SSSSS---------------------S---------------------
---------SS--SS-SSSSSSS-SSSSS---------------------------------------------------
-------------------------SS---S----------------------S-----------S--------------
S-S-S-S----------S-SSSS-------------------S------S------------------S-----------
---SSSSS-----------S----------S--------------SS---------------------------------
--------S----------S----S------S------S-------------------------S--------S-----S
SSSS-------------S--S---S------------S------S--------S---------S--S--S----------
-----------------------S--------------SSSSSSS------S--S-----S-------------------
---S---S-S----------S----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_191
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-----------AGCGAGCATGGCAAATTCAC-------------------------------------------------
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>reverse_2237
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----------------------------------------------------------------------------TGGT
CCCGAATTCAGGGTTG----------------------------------------------------------------
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