Multiple sequence alignment - TraesCS1A01G175300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G175300 chr1A 100.000 2575 0 0 1 2575 313479911 313477337 0.000000e+00 4756
1 TraesCS1A01G175300 chr1A 98.111 794 15 0 1782 2575 118404944 118404151 0.000000e+00 1384
2 TraesCS1A01G175300 chr1A 97.522 807 18 2 1769 2575 530221249 530220445 0.000000e+00 1378
3 TraesCS1A01G175300 chr1A 97.867 797 16 1 1780 2575 579910040 579909244 0.000000e+00 1376
4 TraesCS1A01G175300 chr1A 84.538 1093 134 30 1 1072 181717161 181718239 0.000000e+00 1050
5 TraesCS1A01G175300 chr1A 83.912 1094 139 30 1 1072 181725282 181726360 0.000000e+00 1011
6 TraesCS1A01G175300 chr4A 98.359 792 13 0 1784 2575 181689086 181689877 0.000000e+00 1391
7 TraesCS1A01G175300 chr4A 98.232 792 14 0 1784 2575 181682266 181683057 0.000000e+00 1386
8 TraesCS1A01G175300 chr5A 98.106 792 15 0 1784 2575 291107268 291106477 0.000000e+00 1380
9 TraesCS1A01G175300 chr5A 98.106 792 15 0 1784 2575 611195983 611196774 0.000000e+00 1380
10 TraesCS1A01G175300 chr5A 98.106 792 15 0 1784 2575 646586752 646587543 0.000000e+00 1380
11 TraesCS1A01G175300 chr5A 84.345 1054 128 30 1 1031 367943726 367944765 0.000000e+00 998
12 TraesCS1A01G175300 chr5A 83.503 1079 133 32 1 1059 451212082 451211029 0.000000e+00 965
13 TraesCS1A01G175300 chr5A 83.666 1053 136 30 1 1031 501213604 501212566 0.000000e+00 959
14 TraesCS1A01G175300 chr5A 83.225 1073 140 31 3 1052 501205802 501204747 0.000000e+00 948
15 TraesCS1A01G175300 chr5A 86.683 826 90 19 3 820 328437624 328436811 0.000000e+00 898
16 TraesCS1A01G175300 chr2A 98.106 792 15 0 1784 2575 393088243 393087452 0.000000e+00 1380
17 TraesCS1A01G175300 chr2A 82.669 1004 146 20 3 994 201659319 201660306 0.000000e+00 865
18 TraesCS1A01G175300 chr6A 94.581 775 36 4 1018 1790 335733379 335734149 0.000000e+00 1194
19 TraesCS1A01G175300 chr7A 83.638 1094 141 33 1 1072 524050595 524051672 0.000000e+00 994
20 TraesCS1A01G175300 chr7A 94.309 246 14 0 1477 1722 384689253 384689008 6.730000e-101 377
21 TraesCS1A01G175300 chr7A 90.984 244 22 0 1479 1722 384697153 384696910 1.910000e-86 329
22 TraesCS1A01G175300 chr5D 91.355 428 33 3 1067 1491 57509709 57509283 1.330000e-162 582
23 TraesCS1A01G175300 chr1D 93.473 383 22 2 1101 1481 322493187 322493568 1.340000e-157 566
24 TraesCS1A01G175300 chr5B 91.198 409 32 3 1079 1484 331439152 331438745 1.040000e-153 553
25 TraesCS1A01G175300 chr2D 91.969 386 28 2 1101 1484 170201725 170201341 2.920000e-149 538
26 TraesCS1A01G175300 chr3B 90.220 409 36 3 1079 1484 505109479 505109072 4.880000e-147 531
27 TraesCS1A01G175300 chr3B 89.362 423 40 4 1067 1485 505102026 505101605 6.310000e-146 527
28 TraesCS1A01G175300 chr3B 91.393 244 20 1 1479 1722 59282713 59282955 1.480000e-87 333
29 TraesCS1A01G175300 chr7B 89.877 405 37 3 1080 1481 266795495 266795898 3.800000e-143 518
30 TraesCS1A01G175300 chr7B 88.836 421 43 3 1064 1481 266802643 266803062 4.910000e-142 514
31 TraesCS1A01G175300 chr7D 90.984 244 22 0 1479 1722 178266071 178266314 1.910000e-86 329
32 TraesCS1A01G175300 chr1B 90.574 244 23 0 1479 1722 112391126 112390883 8.890000e-85 324
33 TraesCS1A01G175300 chr1B 89.712 243 24 1 1480 1722 323623907 323623666 2.490000e-80 309
34 TraesCS1A01G175300 chr1B 88.525 244 28 0 1479 1722 493181091 493181334 1.940000e-76 296
35 TraesCS1A01G175300 chr2B 89.712 243 25 0 1480 1722 753532736 753532978 6.920000e-81 311


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G175300 chr1A 313477337 313479911 2574 True 4756 4756 100.000 1 2575 1 chr1A.!!$R2 2574
1 TraesCS1A01G175300 chr1A 118404151 118404944 793 True 1384 1384 98.111 1782 2575 1 chr1A.!!$R1 793
2 TraesCS1A01G175300 chr1A 530220445 530221249 804 True 1378 1378 97.522 1769 2575 1 chr1A.!!$R3 806
3 TraesCS1A01G175300 chr1A 579909244 579910040 796 True 1376 1376 97.867 1780 2575 1 chr1A.!!$R4 795
4 TraesCS1A01G175300 chr1A 181717161 181718239 1078 False 1050 1050 84.538 1 1072 1 chr1A.!!$F1 1071
5 TraesCS1A01G175300 chr1A 181725282 181726360 1078 False 1011 1011 83.912 1 1072 1 chr1A.!!$F2 1071
6 TraesCS1A01G175300 chr4A 181689086 181689877 791 False 1391 1391 98.359 1784 2575 1 chr4A.!!$F2 791
7 TraesCS1A01G175300 chr4A 181682266 181683057 791 False 1386 1386 98.232 1784 2575 1 chr4A.!!$F1 791
8 TraesCS1A01G175300 chr5A 291106477 291107268 791 True 1380 1380 98.106 1784 2575 1 chr5A.!!$R1 791
9 TraesCS1A01G175300 chr5A 611195983 611196774 791 False 1380 1380 98.106 1784 2575 1 chr5A.!!$F2 791
10 TraesCS1A01G175300 chr5A 646586752 646587543 791 False 1380 1380 98.106 1784 2575 1 chr5A.!!$F3 791
11 TraesCS1A01G175300 chr5A 367943726 367944765 1039 False 998 998 84.345 1 1031 1 chr5A.!!$F1 1030
12 TraesCS1A01G175300 chr5A 451211029 451212082 1053 True 965 965 83.503 1 1059 1 chr5A.!!$R3 1058
13 TraesCS1A01G175300 chr5A 501212566 501213604 1038 True 959 959 83.666 1 1031 1 chr5A.!!$R5 1030
14 TraesCS1A01G175300 chr5A 501204747 501205802 1055 True 948 948 83.225 3 1052 1 chr5A.!!$R4 1049
15 TraesCS1A01G175300 chr5A 328436811 328437624 813 True 898 898 86.683 3 820 1 chr5A.!!$R2 817
16 TraesCS1A01G175300 chr2A 393087452 393088243 791 True 1380 1380 98.106 1784 2575 1 chr2A.!!$R1 791
17 TraesCS1A01G175300 chr2A 201659319 201660306 987 False 865 865 82.669 3 994 1 chr2A.!!$F1 991
18 TraesCS1A01G175300 chr6A 335733379 335734149 770 False 1194 1194 94.581 1018 1790 1 chr6A.!!$F1 772
19 TraesCS1A01G175300 chr7A 524050595 524051672 1077 False 994 994 83.638 1 1072 1 chr7A.!!$F1 1071

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
743 770 0.911525 ACTGTCTGGCCCAGCTACAT 60.912 55.0 5.66 0.0 33.09 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1581 1628 0.319125 GAGGATCCAACGATCGAGCC 60.319 60.0 24.34 11.67 45.16 4.7 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 34 5.358442 AGCACACAACATAGTAAACAACCAA 59.642 36.000 0.00 0.00 0.00 3.67
38 40 7.167302 CACAACATAGTAAACAACCAACACATG 59.833 37.037 0.00 0.00 0.00 3.21
40 42 7.575414 ACATAGTAAACAACCAACACATGAA 57.425 32.000 0.00 0.00 0.00 2.57
135 143 5.830991 ACAAACCTACAAATTAAGTGGAGCA 59.169 36.000 0.00 0.00 0.00 4.26
162 170 1.013596 CCGCGGAGTTGCATATTGAA 58.986 50.000 24.07 0.00 34.15 2.69
165 173 2.351418 CGCGGAGTTGCATATTGAAGAA 59.649 45.455 0.00 0.00 34.15 2.52
252 265 3.018856 TGGCAAGAGGTGAAGCATAATG 58.981 45.455 0.00 0.00 0.00 1.90
309 324 2.438411 ACAACAAACAACAAGTCCGGA 58.562 42.857 0.00 0.00 0.00 5.14
332 348 7.254185 CGGAAAAATCCTCATGTGCATATTTTG 60.254 37.037 0.00 0.00 29.60 2.44
334 350 6.549433 AAATCCTCATGTGCATATTTTGGT 57.451 33.333 0.00 0.00 0.00 3.67
336 352 7.658525 AATCCTCATGTGCATATTTTGGTTA 57.341 32.000 0.00 0.00 0.00 2.85
345 361 6.887002 TGTGCATATTTTGGTTATGGTACTGA 59.113 34.615 0.00 0.00 0.00 3.41
411 428 3.527665 AGGCCACCATGTTAAACTAGGAT 59.472 43.478 5.01 0.00 0.00 3.24
512 530 6.147864 TCATGGCATAGGAGCAAATTTAAC 57.852 37.500 0.00 0.00 35.83 2.01
555 573 8.674263 ATTTTTAACATGGATGAAAGTTGCAA 57.326 26.923 0.00 0.00 0.00 4.08
559 577 6.548441 AACATGGATGAAAGTTGCAAATTG 57.452 33.333 13.56 1.04 0.00 2.32
564 582 8.723311 CATGGATGAAAGTTGCAAATTGTTAAT 58.277 29.630 13.56 4.78 0.00 1.40
642 660 3.946606 TGGTGAGCTATGATATGCATGG 58.053 45.455 10.16 0.00 37.87 3.66
645 663 3.622163 GTGAGCTATGATATGCATGGAGC 59.378 47.826 10.16 10.31 45.96 4.70
649 667 5.672503 AGCTATGATATGCATGGAGCTTAG 58.327 41.667 10.16 6.39 43.19 2.18
656 674 1.106285 GCATGGAGCTTAGGGGTTTG 58.894 55.000 0.00 0.00 41.15 2.93
677 695 4.922206 TGTCTGCAAATCTGTAAATCCCT 58.078 39.130 0.00 0.00 0.00 4.20
743 770 0.911525 ACTGTCTGGCCCAGCTACAT 60.912 55.000 5.66 0.00 33.09 2.29
782 814 3.160585 CTCACCACTGGGCCTTGA 58.839 61.111 4.53 0.00 37.90 3.02
812 844 3.695747 GAGAGGGAAGGCCTGCAGC 62.696 68.421 14.44 3.68 42.60 5.25
921 956 1.003545 CAGAAACAACAGCACGTCCAG 60.004 52.381 0.00 0.00 0.00 3.86
929 964 2.217038 AGCACGTCCAGGGTGATGT 61.217 57.895 0.16 0.00 37.60 3.06
1077 1122 1.527611 CATCCATGGCGGCACTGAT 60.528 57.895 16.34 16.41 33.14 2.90
1090 1135 1.407851 GCACTGATGGAGGAGATGCAA 60.408 52.381 0.00 0.00 30.55 4.08
1099 1144 0.835941 AGGAGATGCAAGCGAGGAAT 59.164 50.000 0.00 0.00 0.00 3.01
1102 1147 1.332997 GAGATGCAAGCGAGGAATTGG 59.667 52.381 0.00 0.00 0.00 3.16
1104 1149 1.952296 GATGCAAGCGAGGAATTGGAT 59.048 47.619 0.00 0.00 39.76 3.41
1186 1231 4.329545 GGGCTGGAGGCAACGACA 62.330 66.667 2.29 0.00 44.01 4.35
1197 1242 0.582005 GCAACGACAGTGGTGAACTC 59.418 55.000 0.00 0.00 36.83 3.01
1226 1271 2.591715 GTGGCGCTGGTTCACTGT 60.592 61.111 7.64 0.00 0.00 3.55
1227 1272 2.591429 TGGCGCTGGTTCACTGTG 60.591 61.111 7.64 0.17 0.00 3.66
1244 1289 5.584649 TCACTGTGACAAAAAGAAACGAGAT 59.415 36.000 6.36 0.00 0.00 2.75
1338 1385 3.426568 GTCTCGCCTGCCTTGCAC 61.427 66.667 0.00 0.00 33.79 4.57
1344 1391 2.336088 CCTGCCTTGCACAAACGG 59.664 61.111 0.00 0.00 33.79 4.44
1361 1408 1.153349 GGGAAGATGGAGGCGTGAC 60.153 63.158 0.00 0.00 0.00 3.67
1367 1414 3.362399 ATGGAGGCGTGACAGCTCG 62.362 63.158 0.00 0.00 37.29 5.03
1395 1442 3.650950 GAGGCAGGGGCTGGTTCA 61.651 66.667 0.00 0.00 38.98 3.18
1445 1492 4.021925 GGCTTGCTCCGGTCTGGT 62.022 66.667 0.00 0.00 39.52 4.00
1448 1495 2.847234 TTGCTCCGGTCTGGTGGT 60.847 61.111 0.00 0.00 39.52 4.16
1488 1535 1.048724 CGGGATCCAGGGAAGCACTA 61.049 60.000 15.23 0.00 0.00 2.74
1548 1595 0.600557 CCTCTCGATCCGGATCAAGG 59.399 60.000 36.89 32.53 37.69 3.61
1581 1628 2.055042 AGGGCGCTGTAGGAGACTG 61.055 63.158 7.64 0.00 43.88 3.51
1648 1695 1.693726 CCTGGATCAGATCTGGTGGGA 60.694 57.143 22.42 3.04 32.44 4.37
1804 1851 5.219739 AGTGAAGGAAATATGCCCTAGAGA 58.780 41.667 0.00 0.00 31.36 3.10
1953 2000 5.571277 CCTCTACTTGACTAGCTCGTTAAC 58.429 45.833 0.00 0.00 0.00 2.01
2021 2068 6.375945 TTGATTAACGGGATCACATCATTG 57.624 37.500 0.00 0.00 33.51 2.82
2067 2114 3.435601 CCCATTCCATTAGCTTAGCACCT 60.436 47.826 7.07 0.00 0.00 4.00
2147 2194 5.092554 TGAGATTATGCAACTCCCGTTTA 57.907 39.130 0.00 0.00 0.00 2.01
2207 2254 7.133133 ACGTAACTGGGTGATTATAAAGGAT 57.867 36.000 0.00 0.00 0.00 3.24
2275 2322 5.012328 AGATTAGGATTTGTCACTCCGAC 57.988 43.478 0.00 0.00 45.61 4.79
2519 2566 9.493206 GACCGATAAAGATCTTCGTAGAATATC 57.507 37.037 8.78 9.28 45.90 1.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 34 2.159156 GCATCATGCCATGTTCATGTGT 60.159 45.455 18.73 10.39 41.40 3.72
38 40 2.658373 TTGTGCATCATGCCATGTTC 57.342 45.000 7.30 0.00 44.23 3.18
40 42 2.104170 TGATTGTGCATCATGCCATGT 58.896 42.857 7.30 0.00 44.23 3.21
135 143 1.714899 GCAACTCCGCGGCATATTGT 61.715 55.000 23.51 9.01 0.00 2.71
144 152 1.933181 TCTTCAATATGCAACTCCGCG 59.067 47.619 0.00 0.00 33.35 6.46
145 153 4.355543 TTTCTTCAATATGCAACTCCGC 57.644 40.909 0.00 0.00 0.00 5.54
147 155 5.863935 GGTGTTTTCTTCAATATGCAACTCC 59.136 40.000 0.00 0.00 0.00 3.85
162 170 8.691661 ACTAAATAAGTCATGTGGTGTTTTCT 57.308 30.769 0.00 0.00 30.33 2.52
165 173 8.691661 AGAACTAAATAAGTCATGTGGTGTTT 57.308 30.769 0.00 0.00 37.50 2.83
268 282 3.149005 TCCGGCCTCATTTAAACTTGT 57.851 42.857 0.00 0.00 0.00 3.16
309 324 7.396418 ACCAAAATATGCACATGAGGATTTTT 58.604 30.769 1.99 5.02 0.00 1.94
332 348 2.706190 AGGGCAGATCAGTACCATAACC 59.294 50.000 0.00 0.00 0.00 2.85
334 350 5.427157 TGTTTAGGGCAGATCAGTACCATAA 59.573 40.000 0.00 0.00 0.00 1.90
336 352 3.780294 TGTTTAGGGCAGATCAGTACCAT 59.220 43.478 0.00 0.00 0.00 3.55
345 361 6.948309 ACTCTAAAATTGTGTTTAGGGCAGAT 59.052 34.615 4.80 0.00 42.87 2.90
487 504 5.680594 AAATTTGCTCCTATGCCATGAAA 57.319 34.783 0.00 0.00 0.00 2.69
488 505 6.406849 GGTTAAATTTGCTCCTATGCCATGAA 60.407 38.462 0.00 0.00 0.00 2.57
489 506 5.068987 GGTTAAATTTGCTCCTATGCCATGA 59.931 40.000 0.00 0.00 0.00 3.07
535 553 7.215789 ACAATTTGCAACTTTCATCCATGTTA 58.784 30.769 0.00 0.00 0.00 2.41
564 582 8.898761 TGAAACTTGCTTAGAATTTTGTGTAGA 58.101 29.630 0.00 0.00 0.00 2.59
596 614 6.797454 ACCGTGCATCTTTTGTAAAAACTTA 58.203 32.000 0.00 0.00 0.00 2.24
598 616 5.257082 ACCGTGCATCTTTTGTAAAAACT 57.743 34.783 0.00 0.00 0.00 2.66
599 617 5.276631 CCAACCGTGCATCTTTTGTAAAAAC 60.277 40.000 0.00 0.00 0.00 2.43
601 619 4.142138 ACCAACCGTGCATCTTTTGTAAAA 60.142 37.500 0.00 0.00 0.00 1.52
606 624 1.336440 TCACCAACCGTGCATCTTTTG 59.664 47.619 0.00 0.00 42.69 2.44
608 626 1.238439 CTCACCAACCGTGCATCTTT 58.762 50.000 0.00 0.00 42.69 2.52
609 627 1.237285 GCTCACCAACCGTGCATCTT 61.237 55.000 0.00 0.00 42.69 2.40
610 628 1.672356 GCTCACCAACCGTGCATCT 60.672 57.895 0.00 0.00 42.69 2.90
628 646 5.366460 CCCTAAGCTCCATGCATATCATAG 58.634 45.833 0.00 0.00 45.94 2.23
632 650 2.307098 ACCCCTAAGCTCCATGCATATC 59.693 50.000 0.00 0.00 45.94 1.63
642 660 1.271379 TGCAGACAAACCCCTAAGCTC 60.271 52.381 0.00 0.00 0.00 4.09
656 674 4.096984 CCAGGGATTTACAGATTTGCAGAC 59.903 45.833 0.00 0.00 0.00 3.51
677 695 7.094162 TGGTTCTGCGAATTTGATATTTAACCA 60.094 33.333 0.00 0.00 39.18 3.67
710 733 2.113139 CAGTTTCGGCCCAGTGGT 59.887 61.111 8.74 0.00 0.00 4.16
752 784 3.286751 GTGAGCAGCCGCCAAACA 61.287 61.111 0.00 0.00 39.83 2.83
782 814 0.790993 TCCCTCTCCACTAGTTGGGT 59.209 55.000 10.33 0.00 46.92 4.51
856 888 4.121669 GCCTGCTCGTCTCGCTCA 62.122 66.667 0.00 0.00 0.00 4.26
921 956 1.226888 GTCGTCGCCTACATCACCC 60.227 63.158 0.00 0.00 0.00 4.61
929 964 2.046988 TCCTGTCGTCGTCGCCTA 60.047 61.111 0.00 0.00 36.96 3.93
1072 1117 1.134159 GCTTGCATCTCCTCCATCAGT 60.134 52.381 0.00 0.00 0.00 3.41
1077 1122 1.519246 CTCGCTTGCATCTCCTCCA 59.481 57.895 0.00 0.00 0.00 3.86
1090 1135 1.524621 CCGCATCCAATTCCTCGCT 60.525 57.895 0.00 0.00 0.00 4.93
1138 1183 2.266055 GCTGGACCTGAACGGGAG 59.734 66.667 6.68 0.00 36.97 4.30
1143 1188 2.747686 TTCCGGCTGGACCTGAAC 59.252 61.111 15.79 0.00 46.45 3.18
1186 1231 0.597637 CGAAGCACGAGTTCACCACT 60.598 55.000 0.00 0.00 45.77 4.00
1226 1271 5.510671 GCTTCATCTCGTTTCTTTTTGTCA 58.489 37.500 0.00 0.00 0.00 3.58
1227 1272 4.608882 CGCTTCATCTCGTTTCTTTTTGTC 59.391 41.667 0.00 0.00 0.00 3.18
1244 1289 1.198094 TTCCCTGACCATCCGCTTCA 61.198 55.000 0.00 0.00 0.00 3.02
1338 1385 1.369091 CGCCTCCATCTTCCCGTTTG 61.369 60.000 0.00 0.00 0.00 2.93
1344 1391 0.460987 CTGTCACGCCTCCATCTTCC 60.461 60.000 0.00 0.00 0.00 3.46
1367 1414 3.151022 CTGCCTCCTCGACCTCCC 61.151 72.222 0.00 0.00 0.00 4.30
1395 1442 1.298014 CTTCTTCCTCAAGCCGCCT 59.702 57.895 0.00 0.00 0.00 5.52
1439 1486 3.357079 CCAGCGCAACCACCAGAC 61.357 66.667 11.47 0.00 0.00 3.51
1443 1490 3.977244 CCAACCAGCGCAACCACC 61.977 66.667 11.47 0.00 0.00 4.61
1445 1492 4.514585 ACCCAACCAGCGCAACCA 62.515 61.111 11.47 0.00 0.00 3.67
1448 1495 4.196778 TCCACCCAACCAGCGCAA 62.197 61.111 11.47 0.00 0.00 4.85
1488 1535 1.680651 CGAGCACCTCCTCCTCACT 60.681 63.158 0.00 0.00 0.00 3.41
1539 1586 2.419198 CGCTCCCTCCTTGATCCG 59.581 66.667 0.00 0.00 0.00 4.18
1567 1614 1.435515 GAGCCAGTCTCCTACAGCG 59.564 63.158 0.00 0.00 35.77 5.18
1581 1628 0.319125 GAGGATCCAACGATCGAGCC 60.319 60.000 24.34 11.67 45.16 4.70
1648 1695 0.400213 TCCTCGTTTTCAGCCACCAT 59.600 50.000 0.00 0.00 0.00 3.55
1712 1759 3.061905 GCTCCCTTGTCCCATCCCC 62.062 68.421 0.00 0.00 0.00 4.81
1953 2000 6.359480 GTTAGGAAACATAACCATCTTCGG 57.641 41.667 0.00 0.00 35.56 4.30
2021 2068 5.008415 GTCATGTCAATCACATCATTCTCCC 59.992 44.000 0.00 0.00 44.60 4.30
2067 2114 6.761242 AGCAATAGCAACATACTAAACGATCA 59.239 34.615 0.00 0.00 45.49 2.92
2147 2194 0.544697 ACACAAAGTGTTCCTCCGGT 59.455 50.000 0.00 0.00 45.08 5.28
2207 2254 3.165875 CCTTTGGAGACACCTGTAGAGA 58.834 50.000 0.00 0.00 42.67 3.10
2275 2322 2.226330 CCAGAGATACCTCTCCGACAG 58.774 57.143 0.00 0.00 46.38 3.51
2391 2438 3.379372 CCTAGTTCAATCTCGTTACCGGA 59.621 47.826 9.46 0.00 33.95 5.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.